AlfalfaGEDB | MsG0580029551.01

M. sativa cultivar ZhongmuNo.1 / MsG0580029551.01

KEGG: -
GO: GO:0004672 GO:0005524 GO:0006468 GO:0007165
PFAM: PF00069 PF03822

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029551.01.T01	XP_003617145.1	92.827	474	1	1	1	474	1	441	0	897

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029551.01.T01	Q2V452	76.596	470	76	2	5	474	6	441	0	747

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029551.01.T01	G7K7Q8	92.827	474	1	1	1	474	1	441	0.0	897

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0580029551.01	MsG0780041250.01	PPI
MsG0580029551.01	MsG0880047603.01	PPI
MsG0580029551.01	MsG0180005824.01	PPI
MsG0580029551.01	MsG0880042931.01	PPI
MsG0580029551.01	MsG0280011061.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029551.01.T01	MTR_5g088350	92.827	474	1	1	1	474	1	441	0.0	897
MsG0580029551.01.T01	MTR_5g088350	91.569	427	3	1	1	427	1	394	0.0	796
MsG0580029551.01.T01	MTR_5g088350	90.984	366	0	1	1	366	1	333	0.0	679
MsG0580029551.01.T01	MTR_8g024600	63.499	463	132	4	4	465	8	434	0.0	605
MsG0580029551.01.T01	MTR_2g049790	61.935	465	137	5	7	465	17	447	0.0	596
MsG0580029551.01.T01	MTR_8g024590	63.043	460	132	5	7	465	11	433	0.0	585
MsG0580029551.01.T01	MTR_4g114670	53.814	472	179	4	5	472	3	439	0.0	538
MsG0580029551.01.T01	MTR_8g024600	70.056	354	102	3	113	465	1	351	0.0	520
MsG0580029551.01.T01	MTR_5g067150	53.092	469	181	4	6	470	2	435	0.0	515
MsG0580029551.01.T01	MTR_4g114670	51.059	472	179	5	5	472	3	426	2.36e-176	501

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0580029551.01.T01	AT2G26980	76.596	470	76	2	5	474	6	441	747
MsG0580029551.01.T01	AT2G26980	76.596	470	76	2	5	474	16	451	747
MsG0580029551.01.T01	AT5G21326	73.491	464	90	1	1	464	1	431	709
MsG0580029551.01.T01	AT2G26980	74.545	440	74	2	5	444	6	407	675
MsG0580029551.01.T01	AT2G26980	76.559	401	61	1	5	405	6	373	640
MsG0580029551.01.T01	AT1G30270	66.098	469	119	5	10	472	28	462	634
MsG0580029551.01.T01	AT1G30270	66.098	469	119	5	10	472	28	462	632
MsG0580029551.01.T01	AT1G01140	63.136	472	138	4	2	471	8	445	619
MsG0580029551.01.T01	AT1G01140	62.869	474	138	5	2	471	8	447	614
MsG0580029551.01.T01	AT1G01140	62.605	476	138	5	2	471	8	449	614

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Find 121 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTTCAACAAGCTTGC+AGG	0.333963	5:-98439034	MsG0580029551.01.T01:CDS
AAACCTTAATGTTGCCACAG+AGG	0.668073	5:-98439771	MsG0580029551.01.T01:intron
AAACTTTCAACAAGCTTGCA+GGG	0.553123	5:-98439033	MsG0580029551.01.T01:CDS
AAATGTTGTTCGACTATATG+AGG	0.404071	5:-98443020	MsG0580029551.01.T01:CDS
AAATTTGAGTTAATATGGTG+TGG	0.667774	5:+98444855	None:intergenic
AAATTTGTTTGATGTTGAAC+AGG	0.448519	5:-98440622	MsG0580029551.01.T01:intron
AACCTGCAACCAATACAAAG+AGG	0.623603	5:+98441841	None:intergenic
AACCTTAAAGTCTCCGATTT+TGG	0.136576	5:-98442222	MsG0580029551.01.T01:CDS
AAGGTAAACCATGGACGGAT+GGG	0.634281	5:-98442472	MsG0580029551.01.T01:CDS
AAGGTTCAGCCCTCTAGACA+TGG	0.554908	5:+98440647	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAGGGTCATGATTTG+TGG	+	Chr5:98440964-98440983	None:intergenic	30.0%
AAATGTTGTTCGACTATATG+AGG	-	Chr5:98440555-98440574	MsG0580029551.01.T01:intron	30.0%
AATCAACTCAAATGCATTCA+TGG	+	Chr5:98442907-98442926	None:intergenic	30.0%
AATGATGTTTCTTACAGTCA+TGG	+	Chr5:98441976-98441995	None:intergenic	30.0%
AATTGAAAGAGTAAAACTGG+AGG	+	Chr5:98441835-98441854	None:intergenic	30.0%
ACTGAAAACAATGTGTGTTT+AGG	+	Chr5:98439978-98439997	None:intergenic	30.0%
AGAAATTCTCCTCACTTATT+AGG	+	Chr5:98440059-98440078	None:intergenic	30.0%
AGACGAAGAATTCAAATACA+AGG	-	Chr5:98443435-98443454	MsG0580029551.01.T01:CDS	30.0%
ATAAGATTAGGGTCATCAAA+AGG	+	Chr5:98441765-98441784	None:intergenic	30.0%
ATCACAATCATGGAATATCT+CGG	+	Chr5:98443007-98443026	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	98438716	98444881	98438716	ID=MsG0580029551.01;Name=MsG0580029551.01
Chr5	mRNA	98438716	98444881	98438716	ID=MsG0580029551.01.T01;Parent=MsG0580029551.01;Name=MsG0580029551.01.T01;_AED=0.49;_eAED=0.50;_QI=515\|0.92\|0.8\|1\|0.85\|0.73\|15\|268\|474
Chr5	exon	98438716	98439064	98438716	ID=MsG0580029551.01.T01:exon:25735;Parent=MsG0580029551.01.T01
Chr5	exon	98439614	98439688	98439614	ID=MsG0580029551.01.T01:exon:25734;Parent=MsG0580029551.01.T01
Chr5	exon	98439772	98439828	98439772	ID=MsG0580029551.01.T01:exon:25733;Parent=MsG0580029551.01.T01
Chr5	exon	98439927	98440040	98439927	ID=MsG0580029551.01.T01:exon:25732;Parent=MsG0580029551.01.T01
Chr5	exon	98440623	98440733	98440623	ID=MsG0580029551.01.T01:exon:25731;Parent=MsG0580029551.01.T01
Chr5	exon	98440831	98440953	98440831	ID=MsG0580029551.01.T01:exon:25730;Parent=MsG0580029551.01.T01
Chr5	exon	98441617	98441706	98441617	ID=MsG0580029551.01.T01:exon:25729;Parent=MsG0580029551.01.T01
Chr5	exon	98441797	98441922	98441797	ID=MsG0580029551.01.T01:exon:25728;Parent=MsG0580029551.01.T01
Chr5	exon	98442027	98442080	98442027	ID=MsG0580029551.01.T01:exon:25727;Parent=MsG0580029551.01.T01
Chr5	exon	98442194	98442274	98442194	ID=MsG0580029551.01.T01:exon:25726;Parent=MsG0580029551.01.T01
Chr5	exon	98442384	98442491	98442384	ID=MsG0580029551.01.T01:exon:25725;Parent=MsG0580029551.01.T01
Chr5	exon	98442709	98442796	98442709	ID=MsG0580029551.01.T01:exon:25724;Parent=MsG0580029551.01.T01
Chr5	exon	98442938	98443083	98442938	ID=MsG0580029551.01.T01:exon:25723;Parent=MsG0580029551.01.T01
Chr5	exon	98443317	98443550	98443317	ID=MsG0580029551.01.T01:exon:25722;Parent=MsG0580029551.01.T01
Chr5	exon	98444430	98444881	98444430	ID=MsG0580029551.01.T01:exon:25721;Parent=MsG0580029551.01.T01
Chr5	five_prime_UTR	98444430	98444881	98444430	ID=MsG0580029551.01.T01:five_prime_utr;Parent=MsG0580029551.01.T01
Chr5	five_prime_UTR	98443488	98443550	98443488	ID=MsG0580029551.01.T01:five_prime_utr;Parent=MsG0580029551.01.T01
Chr5	CDS	98443317	98443487	98443317	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	CDS	98442938	98443083	98442938	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	CDS	98442709	98442796	98442709	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	CDS	98442384	98442491	98442384	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	CDS	98442194	98442274	98442194	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	CDS	98442027	98442080	98442027	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	CDS	98441797	98441922	98441797	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	CDS	98441617	98441706	98441617	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	CDS	98440831	98440953	98440831	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	CDS	98440623	98440733	98440623	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	CDS	98439927	98440040	98439927	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	CDS	98439772	98439828	98439772	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	CDS	98439614	98439688	98439614	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	CDS	98438984	98439064	98438984	ID=MsG0580029551.01.T01:cds;Parent=MsG0580029551.01.T01
Chr5	three_prime_UTR	98438716	98438983	98438716	ID=MsG0580029551.01.T01:three_prime_utr;Parent=MsG0580029551.01.T01

Gene Sequence

>MsG0580029551.01.T01

ATGAGTCAGCCTAAAATTAAGCGTAGAGTCGGTATATATGAGGTTGGAAGGACCATTGGTGAGGGAACATTTGCAAAGGTGAAATTTGCAAGGAACTCTGAGACAGGTGAAGCCGTGGCTCTCAAAATTCTTGACAAAGAGAAAGTTCTCAAGCACAAGATGGCTGAGCAGATCAAGAGGGAAATTGCTACCATGAAGTTAATCAAGCATCCAAATGTTGTTCGACTATATGAGGTTGCTGACATGATGACATTTCTTTTCATTAATCTCACTAACCTTCCAGATATTAAATTTGATGATAGTGCTGTCTTGTTTGCACATTTTTGCTTACAGGTCATGGGAAGCAGGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGCGGGGAGCTTTTCGACAAAATTGTAAACCATGGACGGATGGGTGAACCTGAAGCACGTAGGTATTTCCAGCAGCTTATAAATGTTGTTGACTATTGTCACAGCAGAGGTGTCTATCACAGAGATCTGAAGCCAGAAAATTTGCTATTAGATGCTTATGGTAACCTTAAAGTCTCCGATTTTGGATTGAGTGCACTCTCCCAGCAAGTTAGGGATGACGGACTTCTCCATACTACATGTGGAACTCCAAATTATGTTGCTCCAGAGGTTCTTAATGATAGAGGCTATGATGGGGCAACTGCAGACTTGTGGTCTTGTGGAGTGATCCTCTTTGTATTGGTTGCAGGTTACTTGCCTTTTGATGACCCTAATCTTATGGAACTGTATAAAAAAATCTCGTCTGCTGATTTTACTTGCCCCCCGTGGCTTTCTTTCAGCGCGAGGAAATTGATAACTCGAATCTTGGATCCCAATCCCATGACTCGTATCACTATGGCTGAGATTTTGGACGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTTGAGGAAAGCGGGGAAACCAACCTCGACGATGTAGAAGCCGTCTTTAAAGATTCGGAAGAGCACCATGTGACAGAAAAGAAAGAAGAGCAGCCAACATCCATGAATGCATTTGAGTTGATTTCCATGTCTAGAGGGCTGAACCTTGAAAATTTGTTTGATGTTGAACAGGGTTTTAAAAGGGAAACAAGGTTCACTTCGCAATCTCCTGCAGACGAGATAATCAACAAGATTGAAGAAGCTGCTAAACCTCTTGGCTTTGATGTGCAGAAGAAAAATTTCAAGATGAGGCTTGCAAATTCGAAAGCTGGAAGGAAAGGAAACCTTAATGTTGCCACAGAGGTATTTCAAGTGGCTCCTTCTCTTCACATGGTTGAAGTAAGGAAAGCAAAAGGAGATACGTTGGAGTTCCATAAGTTCTACAAAAAACTTTCAACAAGCTTGCAGGGTGTTGTTTGGAAAACAGAAGATGATATGCAAAAGCAAGGTGCTAAATGA

Protein sequence

>MsG0580029551.01.T01

MSQPKIKRRVGIYEVGRTIGEGTFAKVKFARNSETGEAVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVADMMTFLFINLTNLPDIKFDDSAVLFAHFCLQVMGSRTKIYIVLEFVTGGELFDKIVNHGRMGEPEARRYFQQLINVVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLVAGYLPFDDPNLMELYKKISSADFTCPPWLSFSARKLITRILDPNPMTRITMAEILDDEWFKKDYKPPVFEESGETNLDDVEAVFKDSEEHHVTEKKEEQPTSMNAFELISMSRGLNLENLFDVEQGFKRETRFTSQSPADEIINKIEEAAKPLGFDVQKKNFKMRLANSKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKFYKKLSTSLQGVVWKTEDDMQKQGAK*