Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030557.01.T01 | XP_024641273.1 | 90.87 | 230 | 16 | 2 | 1 | 226 | 1 | 229 | 1.07E-138 | 411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030557.01.T01 | Q9FID6 | 43.503 | 177 | 87 | 6 | 26 | 196 | 22 | 191 | 1.87E-32 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030557.01.T01 | A0A396HAD1 | 90.870 | 230 | 16 | 2 | 1 | 226 | 1 | 229 | 5.09e-139 | 411 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580024360.01 | MsG0680030557.01 | 0.809531 | 1.806713e-50 | 1.063430e-47 |
| MsG0580024450.01 | MsG0680030557.01 | 0.850456 | 1.678433e-60 | 3.289745e-57 |
| MsG0580025215.01 | MsG0680030557.01 | 0.816093 | 6.603668e-52 | 4.635508e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030557.01.T01 | MTR_6g015795 | 90.870 | 230 | 16 | 2 | 1 | 226 | 1 | 229 | 5.69e-141 | 414 |
| MsG0680030557.01.T01 | MTR_6g015805 | 83.913 | 230 | 26 | 5 | 1 | 226 | 1 | 223 | 1.19e-120 | 368 |
| MsG0680030557.01.T01 | MTR_6g015805 | 47.059 | 204 | 95 | 7 | 131 | 330 | 203 | 397 | 4.60e-42 | 156 |
| MsG0680030557.01.T01 | MTR_7g015280 | 32.353 | 374 | 171 | 16 | 26 | 323 | 29 | 396 | 1.26e-38 | 146 |
| MsG0680030557.01.T01 | MTR_5g047110 | 38.889 | 234 | 129 | 9 | 1 | 226 | 2 | 229 | 1.17e-35 | 137 |
| MsG0680030557.01.T01 | MTR_5g047060 | 37.736 | 212 | 119 | 6 | 1 | 203 | 2 | 209 | 1.69e-33 | 131 |
| MsG0680030557.01.T01 | MTR_7g015310 | 41.880 | 234 | 109 | 12 | 12 | 226 | 13 | 238 | 1.12e-32 | 129 |
| MsG0680030557.01.T01 | MTR_7g015310 | 34.848 | 132 | 76 | 5 | 197 | 323 | 280 | 406 | 4.18e-12 | 67.8 |
| MsG0680030557.01.T01 | MTR_7g015670 | 42.487 | 193 | 97 | 9 | 26 | 207 | 31 | 220 | 1.18e-32 | 129 |
| MsG0680030557.01.T01 | MTR_7g015670 | 40.517 | 116 | 61 | 5 | 213 | 323 | 294 | 406 | 1.56e-14 | 75.1 |
| MsG0680030557.01.T01 | MTR_7g015390 | 39.908 | 218 | 109 | 10 | 26 | 226 | 29 | 241 | 1.96e-32 | 128 |
| MsG0680030557.01.T01 | MTR_7g015390 | 36.134 | 119 | 70 | 5 | 213 | 327 | 295 | 411 | 7.71e-12 | 66.6 |
| MsG0680030557.01.T01 | MTR_4g052290 | 38.397 | 237 | 125 | 9 | 7 | 226 | 5 | 237 | 3.94e-32 | 127 |
| MsG0680030557.01.T01 | MTR_4g052290 | 39.655 | 116 | 62 | 5 | 213 | 323 | 291 | 403 | 9.57e-14 | 72.8 |
| MsG0680030557.01.T01 | MTR_7g073660 | 35.227 | 264 | 145 | 10 | 14 | 263 | 19 | 270 | 2.22e-31 | 125 |
| MsG0680030557.01.T01 | MTR_4g111925 | 35.227 | 264 | 145 | 10 | 14 | 263 | 19 | 270 | 2.75e-31 | 124 |
| MsG0680030557.01.T01 | MTR_7g015250 | 41.706 | 211 | 105 | 11 | 26 | 225 | 29 | 232 | 4.67e-30 | 121 |
| MsG0680030557.01.T01 | MTR_7g015250 | 34.127 | 126 | 67 | 4 | 213 | 323 | 287 | 411 | 9.69e-13 | 69.7 |
| MsG0680030557.01.T01 | MTR_7g015620 | 41.206 | 199 | 101 | 10 | 24 | 209 | 23 | 218 | 2.69e-28 | 115 |
| MsG0680030557.01.T01 | MTR_7g015240 | 42.188 | 192 | 98 | 8 | 26 | 207 | 29 | 217 | 2.75e-27 | 113 |
| MsG0680030557.01.T01 | MTR_7g015320 | 39.175 | 194 | 103 | 9 | 26 | 207 | 29 | 219 | 9.14e-26 | 108 |
| MsG0680030557.01.T01 | MTR_7g015320 | 34.959 | 123 | 67 | 4 | 213 | 323 | 293 | 414 | 4.41e-11 | 64.3 |
| MsG0680030557.01.T01 | MTR_7g015550 | 39.535 | 215 | 112 | 10 | 26 | 226 | 31 | 241 | 1.79e-25 | 107 |
| MsG0680030557.01.T01 | MTR_7g015550 | 34.211 | 114 | 73 | 2 | 212 | 323 | 294 | 407 | 6.79e-12 | 67.0 |
| MsG0680030557.01.T01 | MTR_7g015420 | 39.378 | 193 | 99 | 9 | 26 | 207 | 29 | 214 | 1.96e-25 | 107 |
| MsG0680030557.01.T01 | MTR_7g015230 | 38.095 | 210 | 114 | 9 | 31 | 226 | 37 | 244 | 1.95e-24 | 104 |
| MsG0680030557.01.T01 | MTR_7g015510 | 39.196 | 199 | 99 | 9 | 26 | 205 | 31 | 226 | 4.09e-24 | 103 |
| MsG0680030557.01.T01 | MTR_1g080740 | 27.673 | 318 | 155 | 13 | 8 | 258 | 5 | 314 | 1.20e-21 | 96.3 |
| MsG0680030557.01.T01 | MTR_7g115300 | 27.987 | 318 | 150 | 13 | 14 | 259 | 15 | 325 | 6.89e-20 | 91.3 |
| MsG0680030557.01.T01 | MTR_5g047120 | 35.503 | 169 | 100 | 6 | 35 | 196 | 41 | 207 | 9.12e-19 | 87.8 |
| MsG0680030557.01.T01 | MTR_2g030310 | 24.242 | 297 | 148 | 9 | 35 | 259 | 32 | 323 | 9.11e-14 | 72.8 |
| MsG0680030557.01.T01 | MTR_2g030310 | 23.906 | 297 | 149 | 9 | 35 | 259 | 32 | 323 | 9.63e-14 | 72.4 |
| MsG0680030557.01.T01 | MTR_2g096160 | 30.729 | 192 | 114 | 8 | 10 | 195 | 10 | 188 | 1.25e-13 | 72.4 |
| MsG0680030557.01.T01 | MTR_6g048090 | 30.583 | 206 | 124 | 7 | 26 | 226 | 22 | 213 | 8.01e-13 | 69.7 |
| MsG0680030557.01.T01 | MTR_7g078220 | 29.319 | 191 | 115 | 8 | 11 | 195 | 9 | 185 | 9.52e-13 | 68.9 |
| MsG0680030557.01.T01 | MTR_2g080220 | 30.769 | 221 | 133 | 7 | 27 | 241 | 27 | 233 | 1.85e-11 | 65.5 |
| MsG0680030557.01.T01 | MTR_4g061833 | 32.571 | 175 | 100 | 8 | 27 | 195 | 28 | 190 | 3.70e-11 | 64.7 |
| MsG0680030557.01.T01 | MTR_4g061930 | 32.571 | 175 | 100 | 8 | 27 | 195 | 28 | 190 | 3.70e-11 | 64.7 |
| MsG0680030557.01.T01 | MTR_8g037700 | 31.839 | 223 | 127 | 10 | 27 | 241 | 59 | 264 | 5.34e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030557.01.T01 | AT5G39020 | 43.503 | 177 | 87 | 6 | 26 | 196 | 22 | 191 | 1.91e-33 | 130 |
| MsG0680030557.01.T01 | AT5G39000 | 40.976 | 205 | 108 | 7 | 27 | 226 | 26 | 222 | 1.73e-32 | 128 |
| MsG0680030557.01.T01 | AT3G51550 | 36.782 | 261 | 141 | 11 | 18 | 264 | 21 | 271 | 9.24e-30 | 120 |
| MsG0680030557.01.T01 | AT5G39030 | 38.739 | 222 | 122 | 7 | 11 | 226 | 5 | 218 | 1.74e-29 | 119 |
| MsG0680030557.01.T01 | AT5G38990 | 38.596 | 228 | 123 | 9 | 4 | 226 | 1 | 216 | 2.15e-29 | 119 |
| MsG0680030557.01.T01 | AT5G39030 | 40.291 | 206 | 109 | 7 | 27 | 226 | 15 | 212 | 4.45e-29 | 118 |
| MsG0680030557.01.T01 | AT1G30570 | 25.767 | 326 | 162 | 12 | 7 | 259 | 9 | 327 | 5.46e-20 | 91.7 |
| MsG0680030557.01.T01 | AT3G46290 | 28.025 | 314 | 148 | 12 | 7 | 259 | 6 | 302 | 1.01e-19 | 90.5 |
| MsG0680030557.01.T01 | AT3G04690 | 35.185 | 162 | 98 | 6 | 35 | 193 | 31 | 188 | 4.08e-18 | 85.9 |
| MsG0680030557.01.T01 | AT5G28680 | 31.937 | 191 | 115 | 7 | 10 | 193 | 7 | 189 | 3.06e-17 | 83.2 |
| MsG0680030557.01.T01 | AT5G28680 | 31.937 | 191 | 115 | 7 | 10 | 193 | 7 | 189 | 3.06e-17 | 83.2 |
| MsG0680030557.01.T01 | AT5G59700 | 32.418 | 182 | 102 | 7 | 26 | 206 | 24 | 185 | 2.55e-16 | 80.5 |
| MsG0680030557.01.T01 | AT4G00300 | 29.381 | 194 | 126 | 6 | 5 | 195 | 3 | 188 | 1.61e-13 | 71.6 |
| MsG0680030557.01.T01 | AT5G54380 | 27.215 | 316 | 156 | 13 | 8 | 259 | 5 | 310 | 2.67e-13 | 71.2 |
| MsG0680030557.01.T01 | AT5G24010 | 32.275 | 189 | 107 | 9 | 13 | 194 | 10 | 184 | 3.69e-13 | 70.9 |
| MsG0680030557.01.T01 | AT2G23200 | 25.938 | 320 | 163 | 10 | 7 | 266 | 13 | 318 | 9.26e-13 | 69.7 |
| MsG0680030557.01.T01 | AT5G61350 | 29.379 | 177 | 106 | 9 | 26 | 195 | 27 | 191 | 2.71e-11 | 65.1 |
Find 72 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCAGACCTTTCTGATTT+TGG | 0.076972 | 6:+5274268 | None:intergenic |
| AGTGGAAATTCTAATAATTA+TGG | 0.216412 | 6:-5275836 | MsG0680030557.01.T01:CDS |
| ACTTTGTTTATGGAAGATTT+TGG | 0.221566 | 6:+5276142 | None:intergenic |
| TGAATATGGAACTTTGTTTA+TGG | 0.239856 | 6:+5276132 | None:intergenic |
| TGGGAATTCCCCGTTGATTC+TGG | 0.254183 | 6:-5274418 | MsG0680030557.01.T01:CDS |
| TTACTATTACTTTCACTCTT+TGG | 0.261504 | 6:+5274220 | None:intergenic |
| AAATGGTTTCACACTTCTTA+AGG | 0.289321 | 6:-5275972 | MsG0680030557.01.T01:CDS |
| GTATAAGAGGGTGATGATTA+TGG | 0.300832 | 6:+5276330 | None:intergenic |
| CAACGGGGAATTCCCATGTT+AGG | 0.358243 | 6:+5274425 | None:intergenic |
| AAAATTCAAATGCATGCTTA+TGG | 0.358421 | 6:-5274181 | MsG0680030557.01.T01:CDS |
| GATAAACGAGCTGTTGAATA+TGG | 0.371772 | 6:+5276118 | None:intergenic |
| TTATTAGAATTTCCACTACT+TGG | 0.372361 | 6:+5275842 | None:intergenic |
| AACCTCAATTGTGGCACAAC+AGG | 0.373259 | 6:-5276256 | MsG0680030557.01.T01:CDS |
| CTGGCTTCATATACTTCATC+AGG | 0.400885 | 6:-5274399 | MsG0680030557.01.T01:CDS |
| AAACCGTTGGTATAAGTAGT+AGG | 0.406261 | 6:+5276028 | None:intergenic |
| TCACCGGTGCTAGTTATGTT+CGG | 0.409390 | 6:+5274355 | None:intergenic |
| CACATGTCCTTGTAAATAAA+CGG | 0.416533 | 6:+5274322 | None:intergenic |
| GGGAGGTGGAAAAGTATAAG+AGG | 0.417418 | 6:+5276317 | None:intergenic |
| GGTGTATAATATAGATCATC+AGG | 0.426588 | 6:+5275782 | None:intergenic |
| TTGAGGTTAAAACGGTCAAT+TGG | 0.438656 | 6:+5276271 | None:intergenic |
| CGTAGGCTTGAAGGTGTAAG+AGG | 0.448967 | 6:+5276296 | None:intergenic |
| TCGGGTCGAGTTCACAGAAA+TGG | 0.453179 | 6:+5274374 | None:intergenic |
| CAATTGGTTCGTAGGCTTGA+AGG | 0.460075 | 6:+5276287 | None:intergenic |
| GTTTAAGAGTTTGTTGAGAG+TGG | 0.460300 | 6:+5274447 | None:intergenic |
| AGAACAATTTGATGTTAGAA+TGG | 0.463868 | 6:-5274294 | MsG0680030557.01.T01:CDS |
| TGTGAAACCATTTGAAATAA+CGG | 0.472819 | 6:+5275982 | None:intergenic |
| AGTGAAAATCCAGGATCATC+AGG | 0.475266 | 6:+5275758 | None:intergenic |
| AAAGAATATGTTATTTACGT+TGG | 0.477278 | 6:-5275896 | MsG0680030557.01.T01:CDS |
| CACCGGTGCTAGTTATGTTC+GGG | 0.484714 | 6:+5274356 | None:intergenic |
| GTCTCTAGTGCAACGTTGGA+TGG | 0.488829 | 6:+5275701 | None:intergenic |
| TCATTAAACGCTGATGTTGA+AGG | 0.490768 | 6:-5275938 | MsG0680030557.01.T01:CDS |
| TATATGAAGCCAGAATCAAC+GGG | 0.492167 | 6:+5274409 | None:intergenic |
| CTACCGACGGACAACGAACA+TGG | 0.492374 | 6:-5276228 | MsG0680030557.01.T01:CDS |
| TTTGGAACAGAAACTGTTGT+TGG | 0.494650 | 6:+5276160 | None:intergenic |
| TATACACCACCTGATGATCC+TGG | 0.501296 | 6:-5275767 | MsG0680030557.01.T01:CDS |
| TTGGAACAGAAACTGTTGTT+GGG | 0.504341 | 6:+5276161 | None:intergenic |
| TGCCACAATTGAGGTTAAAA+CGG | 0.504648 | 6:+5276263 | None:intergenic |
| TTCCTGTTGTGCCACAATTG+AGG | 0.506771 | 6:+5276254 | None:intergenic |
| ATCATAACGGTTAAAACCGT+TGG | 0.507788 | 6:+5276015 | None:intergenic |
| AGTCTTACCGTTTATTTACA+AGG | 0.515552 | 6:-5274329 | MsG0680030557.01.T01:CDS |
| AAAACGGTCAATTGGTTCGT+AGG | 0.516426 | 6:+5276279 | None:intergenic |
| TTTACGTTGGTGATGATCAA+AGG | 0.518538 | 6:-5275883 | MsG0680030557.01.T01:CDS |
| GTATATGAAGCCAGAATCAA+CGG | 0.525478 | 6:+5274408 | None:intergenic |
| ACAAACTCTTAAACCTAACA+TGG | 0.528736 | 6:-5274438 | MsG0680030557.01.T01:CDS |
| GACGGACAACGAACATGGAC+AGG | 0.530375 | 6:-5276223 | MsG0680030557.01.T01:CDS |
| TACCCTACTACTTATACCAA+CGG | 0.537022 | 6:-5276031 | MsG0680030557.01.T01:CDS |
| TATTCTTTACCCGTCAGTAC+AGG | 0.538429 | 6:-5276079 | MsG0680030557.01.T01:CDS |
| TCCAACGTTGCACTAGAGAC+AGG | 0.541987 | 6:-5275698 | MsG0680030557.01.T01:intron |
| ATGCATGCTTATGGTGGTAA+TGG | 0.545332 | 6:-5274172 | MsG0680030557.01.T01:CDS |
| AACCGTTGGTATAAGTAGTA+GGG | 0.547927 | 6:+5276029 | None:intergenic |
| TTGAAGGTGTAAGAGGGAGG+TGG | 0.551545 | 6:+5276303 | None:intergenic |
| GGAGGTGGAAAAGTATAAGA+GGG | 0.563249 | 6:+5276318 | None:intergenic |
| TTGGATGGAATAGTATATGC+TGG | 0.565567 | 6:+5275716 | None:intergenic |
| CGTTTATTTACAAGGACATG+TGG | 0.573048 | 6:-5274321 | MsG0680030557.01.T01:CDS |
| AATAGTATATGCTGGTATGA+TGG | 0.580915 | 6:+5275724 | None:intergenic |
| GACCCCACAAGTGAAAATCC+AGG | 0.594772 | 6:+5275749 | None:intergenic |
| AATGGACCCCAAAATCAGAA+AGG | 0.596437 | 6:-5274276 | MsG0680030557.01.T01:CDS |
| GACCCGAACATAACTAGCAC+CGG | 0.600359 | 6:-5274358 | MsG0680030557.01.T01:CDS |
| GAATTTAGGACCTGTACTGA+CGG | 0.605805 | 6:+5276069 | None:intergenic |
| ATAATATAGATCATCAGGCA+TGG | 0.614322 | 6:+5275787 | None:intergenic |
| ATTCAAATGCATGCTTATGG+TGG | 0.617292 | 6:-5274178 | MsG0680030557.01.T01:CDS |
| TGTCCATGTTCGTTGTCCGT+CGG | 0.618927 | 6:+5276225 | None:intergenic |
| AATTTAGGACCTGTACTGAC+GGG | 0.621399 | 6:+5276070 | None:intergenic |
| ACCTGTCTCTAGTGCAACGT+TGG | 0.625804 | 6:+5275697 | None:intergenic |
| AAACGGTAAGACTCTATCAC+CGG | 0.627489 | 6:+5274339 | None:intergenic |
| AGTATATGCTGGTATGATGG+TGG | 0.641458 | 6:+5275727 | None:intergenic |
| GTAGGCTTGAAGGTGTAAGA+GGG | 0.650988 | 6:+5276297 | None:intergenic |
| ACAACAGGAAACTCTACCGA+CGG | 0.654858 | 6:-5276241 | MsG0680030557.01.T01:CDS |
| GGCTTGAAGGTGTAAGAGGG+AGG | 0.658222 | 6:+5276300 | None:intergenic |
| CAAACTCTTAAACCTAACAT+GGG | 0.668191 | 6:-5274437 | MsG0680030557.01.T01:CDS |
| GAAAATCCAGGATCATCAGG+TGG | 0.688372 | 6:+5275761 | None:intergenic |
| ATATGAAGCCAGAATCAACG+GGG | 0.812028 | 6:+5274410 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATTCAATTAAAAAATT+TGG | + | Chr6:5275149-5275168 | None:intergenic | 10.0% |
| !!! | AATAATTATGGTTTTATTAA+TGG | - | Chr6:5274690-5274709 | MsG0680030557.01.T01:intron | 10.0% |
| !! | AATGCAAACCAATATATAAT+AGG | + | Chr6:5275794-5275813 | None:intergenic | 20.0% |
| !! | AGTGGAAATTCTAATAATTA+TGG | - | Chr6:5274678-5274697 | MsG0680030557.01.T01:intron | 20.0% |
| !! | ATTAGCTAGATTAATGATTA+TGG | - | Chr6:5275409-5275428 | MsG0680030557.01.T01:intron | 20.0% |
| !! | GTATATGTTATAGGATTTAA+AGG | + | Chr6:5275761-5275780 | None:intergenic | 20.0% |
| !! | TCTAAATACAAATTACATAC+TGG | + | Chr6:5274892-5274911 | None:intergenic | 20.0% |
| !!! | AAAGAATATGTTATTTACGT+TGG | - | Chr6:5274618-5274637 | MsG0680030557.01.T01:intron | 20.0% |
| !!! | ATACTATTGTTATTGCTTTT+TGG | - | Chr6:5275513-5275532 | MsG0680030557.01.T01:intron | 20.0% |
| !!! | ATGGTTTTGAAATTTATCAA+TGG | + | Chr6:5274168-5274187 | None:intergenic | 20.0% |
| !!! | TAATCCTGGATTTTAATTAT+TGG | + | Chr6:5275174-5275193 | None:intergenic | 20.0% |
| !!! | TTATCCTGGATTTTAATTAT+TGG | + | Chr6:5275346-5275365 | None:intergenic | 20.0% |
| !!! | TTTTTTACCGTTATTTCAAA+TGG | - | Chr6:5274525-5274544 | MsG0680030557.01.T01:intron | 20.0% |
| ! | AAAAACCGAAAATGCTAATA+TGG | - | Chr6:5274918-5274937 | MsG0680030557.01.T01:intron | 25.0% |
| ! | AAAACCGAAAATGCTAATAT+GGG | - | Chr6:5274919-5274938 | MsG0680030557.01.T01:intron | 25.0% |
| ! | AAAATTCAAATGCATGCTTA+TGG | - | Chr6:5276333-5276352 | MsG0680030557.01.T01:CDS | 25.0% |
| ! | AATGCCATCCTATTATATAT+TGG | - | Chr6:5275783-5275802 | MsG0680030557.01.T01:CDS | 25.0% |
| ! | AGAACAATTTGATGTTAGAA+TGG | - | Chr6:5276220-5276239 | MsG0680030557.01.T01:CDS | 25.0% |
| ! | ATATATAATAGGATGGCATT+AGG | + | Chr6:5275783-5275802 | None:intergenic | 25.0% |
| ! | CAAACCAATATATAATAGGA+TGG | + | Chr6:5275790-5275809 | None:intergenic | 25.0% |
| ! | TGATCCAATAATTAAAATCC+AGG | - | Chr6:5275167-5275186 | MsG0680030557.01.T01:intron | 25.0% |
| ! | TTACTATTACTTTCACTCTT+TGG | + | Chr6:5276297-5276316 | None:intergenic | 25.0% |
| ! | TTATTAGAATTTCCACTACT+TGG | + | Chr6:5274675-5274694 | None:intergenic | 25.0% |
| !! | TGAATATGGAACTTTGTTTA+TGG | + | Chr6:5274385-5274404 | None:intergenic | 25.0% |
| !! | TGTGAAACCATTTGAAATAA+CGG | + | Chr6:5274535-5274554 | None:intergenic | 25.0% |
| !!! | AAGGAGTTGACATATTTTTT+GGG | + | Chr6:5275089-5275108 | None:intergenic | 25.0% |
| !!! | ACTTTGTTTATGGAAGATTT+TGG | + | Chr6:5274375-5274394 | None:intergenic | 25.0% |
| !!! | GCTACTTCTGTATTTTTTAA+AGG | + | Chr6:5275548-5275567 | None:intergenic | 25.0% |
| !!! | TAAGGAGTTGACATATTTTT+TGG | + | Chr6:5275090-5275109 | None:intergenic | 25.0% |
| AAAAATAGACGGAGGAATTT+AGG | + | Chr6:5274462-5274481 | None:intergenic | 30.0% | |
| AAATGGTTTCACACTTCTTA+AGG | - | Chr6:5274542-5274561 | MsG0680030557.01.T01:intron | 30.0% | |
| AATAAGTGAGTGAAAATTGC+GGG | - | Chr6:5275664-5275683 | MsG0680030557.01.T01:intron | 30.0% | |
| AATAGTATATGCTGGTATGA+TGG | + | Chr6:5274793-5274812 | None:intergenic | 30.0% | |
| ACAAACTCTTAAACCTAACA+TGG | - | Chr6:5276076-5276095 | MsG0680030557.01.T01:CDS | 30.0% | |
| AGTCTTACCGTTTATTTACA+AGG | - | Chr6:5276185-5276204 | MsG0680030557.01.T01:CDS | 30.0% | |
| ATAATATAGATCATCAGGCA+TGG | + | Chr6:5274730-5274749 | None:intergenic | 30.0% | |
| CAAACTCTTAAACCTAACAT+GGG | - | Chr6:5276077-5276096 | MsG0680030557.01.T01:CDS | 30.0% | |
| CACATGTCCTTGTAAATAAA+CGG | + | Chr6:5276195-5276214 | None:intergenic | 30.0% | |
| GAATAAGTGAGTGAAAATTG+CGG | - | Chr6:5275663-5275682 | MsG0680030557.01.T01:intron | 30.0% | |
| GGTGTATAATATAGATCATC+AGG | + | Chr6:5274735-5274754 | None:intergenic | 30.0% | |
| TAGTAGGGTAGAAAAATAGA+CGG | + | Chr6:5274473-5274492 | None:intergenic | 30.0% | |
| TGGCATTAGGTATATGTTAT+AGG | + | Chr6:5275770-5275789 | None:intergenic | 30.0% | |
| ! | AAGACCCATATTAGCATTTT+CGG | + | Chr6:5274926-5274945 | None:intergenic | 30.0% |
| ! | AAGCATGCATTTGAATTTTG+AGG | + | Chr6:5276332-5276351 | None:intergenic | 30.0% |
| ! | GAAACTCTAAGAATTAATCC+TGG | + | Chr6:5275188-5275207 | None:intergenic | 30.0% |
| ! | TAGTAGGATGTTTGTTAGTA+AGG | + | Chr6:5275108-5275127 | None:intergenic | 30.0% |
| ! | TGAAACTCTAAGAATTATCC+TGG | + | Chr6:5275360-5275379 | None:intergenic | 30.0% |
| !! | CGGTAAAAAAAGCATCATAA+CGG | + | Chr6:5274515-5274534 | None:intergenic | 30.0% |
| !!! | TTGAGTTTTATTCCAAGTAG+TGG | - | Chr6:5274660-5274679 | MsG0680030557.01.T01:intron | 30.0% |
| AAACCGTTGGTATAAGTAGT+AGG | + | Chr6:5274489-5274508 | None:intergenic | 35.0% | |
| AACCGTTGGTATAAGTAGTA+GGG | + | Chr6:5274488-5274507 | None:intergenic | 35.0% | |
| ACTCACAAACATTCAAGACA+TGG | - | Chr6:5275884-5275903 | MsG0680030557.01.T01:CDS | 35.0% | |
| ATATACTCCATGCAGATTAC+AGG | - | Chr6:5275838-5275857 | MsG0680030557.01.T01:CDS | 35.0% | |
| ATCATAACGGTTAAAACCGT+TGG | + | Chr6:5274502-5274521 | None:intergenic | 35.0% | |
| ATTCAAATGCATGCTTATGG+TGG | - | Chr6:5276336-5276355 | MsG0680030557.01.T01:CDS | 35.0% | |
| CGTTTATTTACAAGGACATG+TGG | - | Chr6:5276193-5276212 | MsG0680030557.01.T01:CDS | 35.0% | |
| GATAAACGAGCTGTTGAATA+TGG | + | Chr6:5274399-5274418 | None:intergenic | 35.0% | |
| GATACACACATTCATCTAGT+AGG | + | Chr6:5275124-5275143 | None:intergenic | 35.0% | |
| GTATAAGAGGGTGATGATTA+TGG | + | Chr6:5274187-5274206 | None:intergenic | 35.0% | |
| GTATATGAAGCCAGAATCAA+CGG | + | Chr6:5276109-5276128 | None:intergenic | 35.0% | |
| TACCCTACTACTTATACCAA+CGG | - | Chr6:5274483-5274502 | MsG0680030557.01.T01:intron | 35.0% | |
| TATATGAAGCCAGAATCAAC+GGG | + | Chr6:5276108-5276127 | None:intergenic | 35.0% | |
| TATGGGTCTTTATATGCCAT+CGG | - | Chr6:5274936-5274955 | MsG0680030557.01.T01:intron | 35.0% | |
| TCATTAAACGCTGATGTTGA+AGG | - | Chr6:5274576-5274595 | MsG0680030557.01.T01:intron | 35.0% | |
| TGAGGTTTGATGTGTTGAAA+CGG | + | Chr6:5275700-5275719 | None:intergenic | 35.0% | |
| TGCCACAATTGAGGTTAAAA+CGG | + | Chr6:5274254-5274273 | None:intergenic | 35.0% | |
| TGTTGTGTTCTTAAACAGGT+TGG | + | Chr6:5275937-5275956 | None:intergenic | 35.0% | |
| TTCAAATCATCACGTGAGTT+AGG | - | Chr6:5276036-5276055 | MsG0680030557.01.T01:CDS | 35.0% | |
| TTGAGGTTAAAACGGTCAAT+TGG | + | Chr6:5274246-5274265 | None:intergenic | 35.0% | |
| TTGGAACAGAAACTGTTGTT+GGG | + | Chr6:5274356-5274375 | None:intergenic | 35.0% | |
| TTGGATGGAATAGTATATGC+TGG | + | Chr6:5274801-5274820 | None:intergenic | 35.0% | |
| ! | AGTAAGGAGGTGACATATTT+TGG | + | Chr6:5275264-5275283 | None:intergenic | 35.0% |
| ! | GATGATTTGAAGAGGTCTTT+TGG | + | Chr6:5276027-5276046 | None:intergenic | 35.0% |
| ! | GTAAGGAGGTGACATATTTT+GGG | + | Chr6:5275263-5275282 | None:intergenic | 35.0% |
| ! | GTGTTGTTGTGTTCTTAAAC+AGG | + | Chr6:5275941-5275960 | None:intergenic | 35.0% |
| ! | TAGGATGTTTGTTAGTAAGG+AGG | + | Chr6:5275105-5275124 | None:intergenic | 35.0% |
| ! | TTTGGAACAGAAACTGTTGT+TGG | + | Chr6:5274357-5274376 | None:intergenic | 35.0% |
| !! | CTTAGTTGATAGCTCTAATG+AGG | + | Chr6:5275718-5275737 | None:intergenic | 35.0% |
| !! | GTTTAAGAGTTTGTTGAGAG+TGG | + | Chr6:5276070-5276089 | None:intergenic | 35.0% |
| !! | TTTACGTTGGTGATGATCAA+AGG | - | Chr6:5274631-5274650 | MsG0680030557.01.T01:intron | 35.0% |
| AAACGGTAAGACTCTATCAC+CGG | + | Chr6:5276178-5276197 | None:intergenic | 40.0% | |
| AACTAAGTTGCACGCACAAA+TGG | - | Chr6:5275731-5275750 | MsG0680030557.01.T01:CDS | 40.0% | |
| AATGGACCCCAAAATCAGAA+AGG | - | Chr6:5276238-5276257 | MsG0680030557.01.T01:CDS | 40.0% | |
| ACTCACGTGATGATTTGAAG+AGG | + | Chr6:5276035-5276054 | None:intergenic | 40.0% | |
| AGTATATGCTGGTATGATGG+TGG | + | Chr6:5274790-5274809 | None:intergenic | 40.0% | |
| AGTGAAAATCCAGGATCATC+AGG | + | Chr6:5274759-5274778 | None:intergenic | 40.0% | |
| ATATGAAGCCAGAATCAACG+GGG | + | Chr6:5276107-5276126 | None:intergenic | 40.0% | |
| ATGCATGCTTATGGTGGTAA+TGG | - | Chr6:5276342-5276361 | MsG0680030557.01.T01:CDS | 40.0% | |
| ATGGGTCTTTATATGCCATC+GGG | - | Chr6:5274937-5274956 | MsG0680030557.01.T01:intron | 40.0% | |
| CTGGCTTCATATACTTCATC+AGG | - | Chr6:5276115-5276134 | MsG0680030557.01.T01:CDS | 40.0% | |
| CTTTGATCCTGTAATCTGCA+TGG | + | Chr6:5275848-5275867 | None:intergenic | 40.0% | |
| GCAGATTACAGGATCAAAGT+TGG | - | Chr6:5275849-5275868 | MsG0680030557.01.T01:CDS | 40.0% | |
| TAGGGTAGAAAAATAGACGG+AGG | + | Chr6:5274470-5274489 | None:intergenic | 40.0% | |
| TATTCTTTACCCGTCAGTAC+AGG | - | Chr6:5274435-5274454 | MsG0680030557.01.T01:CDS | 40.0% | |
| TTAGCTTACCTGCTATGTCT+TGG | + | Chr6:5275976-5275995 | None:intergenic | 40.0% | |
| TTTGTCTTCCAAGACATAGC+AGG | - | Chr6:5275965-5275984 | MsG0680030557.01.T01:CDS | 40.0% | |
| ! | AATTTAGGACCTGTACTGAC+GGG | + | Chr6:5274447-5274466 | None:intergenic | 40.0% |
| ! | ACTGCAGACCTTTCTGATTT+TGG | + | Chr6:5276249-5276268 | None:intergenic | 40.0% |
| ! | ATCCTGGATTTTCACTTGTG+GGG | - | Chr6:5274763-5274782 | MsG0680030557.01.T01:intron | 40.0% |
| ! | CTGCAGACCTTTCTGATTTT+GGG | + | Chr6:5276248-5276267 | None:intergenic | 40.0% |
| ! | GAATTTAGGACCTGTACTGA+CGG | + | Chr6:5274448-5274467 | None:intergenic | 40.0% |
| ! | GATCCTGGATTTTCACTTGT+GGG | - | Chr6:5274762-5274781 | MsG0680030557.01.T01:intron | 40.0% |
| ! | GGAGGTGGAAAAGTATAAGA+GGG | + | Chr6:5274199-5274218 | None:intergenic | 40.0% |
| ! | TGATCCTGGATTTTCACTTG+TGG | - | Chr6:5274761-5274780 | MsG0680030557.01.T01:intron | 40.0% |
| ! | TGCAGACCTTTCTGATTTTG+GGG | + | Chr6:5276247-5276266 | None:intergenic | 40.0% |
| !! | AAAACGGTCAATTGGTTCGT+AGG | + | Chr6:5274238-5274257 | None:intergenic | 40.0% |
| !! | GACCGTTTTAACCTCAATTG+TGG | - | Chr6:5274249-5274268 | MsG0680030557.01.T01:CDS | 40.0% |
| AACCTCAATTGTGGCACAAC+AGG | - | Chr6:5274258-5274277 | MsG0680030557.01.T01:CDS | 45.0% | |
| ACAACAGGAAACTCTACCGA+CGG | - | Chr6:5274273-5274292 | MsG0680030557.01.T01:CDS | 45.0% | |
| GAAAATCCAGGATCATCAGG+TGG | + | Chr6:5274756-5274775 | None:intergenic | 45.0% | |
| GGTTTGATGTGTTGAAACGG+CGG | + | Chr6:5275697-5275716 | None:intergenic | 45.0% | |
| GTGTCTTAACATGTACCCGA+TGG | + | Chr6:5274955-5274974 | None:intergenic | 45.0% | |
| TATACACCACCTGATGATCC+TGG | - | Chr6:5274747-5274766 | MsG0680030557.01.T01:intron | 45.0% | |
| TTCCTGTTGTGCCACAATTG+AGG | + | Chr6:5274263-5274282 | None:intergenic | 45.0% | |
| ! | GGGAGGTGGAAAAGTATAAG+AGG | + | Chr6:5274200-5274219 | None:intergenic | 45.0% |
| ! | GTAGGCTTGAAGGTGTAAGA+GGG | + | Chr6:5274220-5274239 | None:intergenic | 45.0% |
| ! | TCACCGGTGCTAGTTATGTT+CGG | + | Chr6:5276162-5276181 | None:intergenic | 45.0% |
| !! | CAATTGGTTCGTAGGCTTGA+AGG | + | Chr6:5274230-5274249 | None:intergenic | 45.0% |
| ACCTGTCTCTAGTGCAACGT+TGG | + | Chr6:5274820-5274839 | None:intergenic | 50.0% | |
| CAACGGGGAATTCCCATGTT+AGG | + | Chr6:5276092-5276111 | None:intergenic | 50.0% | |
| GACATGGCATGCTCAGAAAC+TGG | - | Chr6:5275900-5275919 | MsG0680030557.01.T01:CDS | 50.0% | |
| GACCCCACAAGTGAAAATCC+AGG | + | Chr6:5274768-5274787 | None:intergenic | 50.0% | |
| GACCCGAACATAACTAGCAC+CGG | - | Chr6:5276156-5276175 | MsG0680030557.01.T01:CDS | 50.0% | |
| GTCTCTAGTGCAACGTTGGA+TGG | + | Chr6:5274816-5274835 | None:intergenic | 50.0% | |
| TCCAACGTTGCACTAGAGAC+AGG | - | Chr6:5274816-5274835 | MsG0680030557.01.T01:intron | 50.0% | |
| TCGGGTCGAGTTCACAGAAA+TGG | + | Chr6:5276143-5276162 | None:intergenic | 50.0% | |
| TGTCCATGTTCGTTGTCCGT+CGG | + | Chr6:5274292-5274311 | None:intergenic | 50.0% | |
| ! | CACCGGTGCTAGTTATGTTC+GGG | + | Chr6:5276161-5276180 | None:intergenic | 50.0% |
| ! | CGTAGGCTTGAAGGTGTAAG+AGG | + | Chr6:5274221-5274240 | None:intergenic | 50.0% |
| ! | TTGAAGGTGTAAGAGGGAGG+TGG | + | Chr6:5274214-5274233 | None:intergenic | 50.0% |
| !! | TGGGAATTCCCCGTTGATTC+TGG | - | Chr6:5276096-5276115 | MsG0680030557.01.T01:CDS | 50.0% |
| CTACCGACGGACAACGAACA+TGG | - | Chr6:5274286-5274305 | MsG0680030557.01.T01:CDS | 55.0% | |
| GACGGACAACGAACATGGAC+AGG | - | Chr6:5274291-5274310 | MsG0680030557.01.T01:CDS | 55.0% | |
| ! | GGCTTGAAGGTGTAAGAGGG+AGG | + | Chr6:5274217-5274236 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 5274159 | 5276377 | 5274159 | ID=MsG0680030557.01;Name=MsG0680030557.01 |
| Chr6 | mRNA | 5274159 | 5276377 | 5274159 | ID=MsG0680030557.01.T01;Parent=MsG0680030557.01;Name=MsG0680030557.01.T01;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|2|0|332 |
| Chr6 | exon | 5275699 | 5276377 | 5275699 | ID=MsG0680030557.01.T01:exon:4362;Parent=MsG0680030557.01.T01 |
| Chr6 | exon | 5274159 | 5274478 | 5274159 | ID=MsG0680030557.01.T01:exon:4361;Parent=MsG0680030557.01.T01 |
| Chr6 | CDS | 5275699 | 5276377 | 5275699 | ID=MsG0680030557.01.T01:cds;Parent=MsG0680030557.01.T01 |
| Chr6 | CDS | 5274159 | 5274478 | 5274159 | ID=MsG0680030557.01.T01:cds;Parent=MsG0680030557.01.T01 |
| Gene Sequence |
| Protein sequence |
