AlfalfaGEDB | MsG0580024450.01

M. sativa cultivar ZhongmuNo.1 / MsG0580024450.01

KEGG: -
GO: GO:0004252 GO:0006508
PFAM: PF00082 PF02225 PF05922

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024450.01.T01	XP_003611195.3	95.232	734	35	0	188	921	43	776	0	1426

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024450.01.T01	G7KEU7	91.37	730	61	2	193	921	20	748	0	1355

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024450.01.T01	G7KEU6	95.232	734	35	0	188	921	23	756	0.0	1425

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048909.01	MsG0580024450.01	0.820484	6.694480e-53	5.303672e-50
MsG0080048969.01	MsG0580024450.01	0.838985	2.076875e-57	2.828540e-54
MsG0180001367.01	MsG0580024450.01	0.809512	1.824407e-50	1.073249e-47
MsG0180001827.01	MsG0580024450.01	0.844704	6.409335e-59	1.043428e-55
MsG0180003451.01	MsG0580024450.01	0.813102	3.033789e-51	1.963013e-48
MsG0180004852.01	MsG0580024450.01	0.805812	1.114212e-49	5.951821e-47
MsG0180004865.01	MsG0580024450.01	0.813755	2.180097e-51	1.435966e-48
MsG0180005283.01	MsG0580024450.01	0.803144	4.011106e-49	2.000449e-46
MsG0180005758.01	MsG0580024450.01	-0.803867	2.840590e-49	1.443349e-46
MsG0280006451.01	MsG0580024450.01	0.800712	1.267370e-48	5.942089e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0580024450.01.T01	MTR_5g011310	95.232	734	35	0	188	921	23	756	1425
MsG0580024450.01.T01	MTR_5g011340	91.020	735	65	1	188	921	19	753	1364
MsG0580024450.01.T01	MTR_5g011320	91.370	730	61	2	193	921	20	748	1355
MsG0580024450.01.T01	MTR_5g011370	89.782	734	75	0	188	921	43	776	1342
MsG0580024450.01.T01	MTR_5g011190	89.905	733	74	0	188	920	23	755	1339
MsG0580024450.01.T01	MTR_5g011280	65.129	737	245	6	189	920	28	757	944
MsG0580024450.01.T01	MTR_5g011270	65.247	728	237	7	199	921	38	754	931
MsG0580024450.01.T01	MTR_5g011260	64.198	729	247	6	196	920	35	753	926
MsG0580024450.01.T01	MTR_4g102400	60.221	724	266	12	210	920	40	754	843
MsG0580024450.01.T01	MTR_7g098630	45.817	753	359	19	203	918	20	760	597

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024450.01.T01	AT1G04110	44.211	760	364	19	209	921	27	773	0.0	579
MsG0580024450.01.T01	AT5G67360	44.776	737	367	17	209	918	31	754	0.0	567
MsG0580024450.01.T01	AT2G05920	45.222	743	362	17	203	917	23	748	0.0	554
MsG0580024450.01.T01	AT3G14067	42.190	749	385	16	207	918	30	767	0.0	551
MsG0580024450.01.T01	AT3G14240	42.743	751	387	15	209	921	27	772	0.0	547
MsG0580024450.01.T01	AT4G34980	42.308	728	368	14	229	918	45	758	1.45e-180	541
MsG0580024450.01.T01	AT1G01900	41.678	751	381	17	209	921	43	774	7.72e-168	508
MsG0580024450.01.T01	AT5G51750	39.740	770	413	16	191	920	18	776	1.30e-161	493
MsG0580024450.01.T01	AT2G04160	39.340	727	396	13	226	918	55	770	3.04e-150	462
MsG0580024450.01.T01	AT5G59810	38.038	744	417	15	209	918	41	774	7.00e-150	462

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Find 201 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGTAAAAGAAGACT+CGG	0.619281	5:-5092062	MsG0580024450.01.T01:CDS
AAAACCATTCTGTCCTTGTG+AGG	0.626249	5:+5090844	None:intergenic
AAAAGCCTTTGATCCAGTAT+AGG	0.446877	5:+5089323	None:intergenic
AAACCTGACATCATTGGTCC+AGG	0.543908	5:-5089545	MsG0580024450.01.T01:CDS
AAAGCCTTTGATCCAGTATA+GGG	0.451944	5:+5089324	None:intergenic
AAAGGCCATTGCGAATTCAC+TGG	0.527872	5:-5090541	MsG0580024450.01.T01:CDS
AAAGTAGTGCTGTGTGATGT+TGG	0.478697	5:-5089860	MsG0580024450.01.T01:CDS
AAATAAGGAACATAATCTTC+AGG	0.532280	5:+5089218	None:intergenic
AACATTGTAGCCTCCAACTC+CGG	0.456994	5:+5094680	None:intergenic
AACTCACAGTCCAACTTTCT+TGG	0.265626	5:-5090701	MsG0580024450.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCAGTAAAAGAAGACT+CGG	-	Chr5:5091814-5091833	MsG0580024450.01.T01:intron	30.0%
AAAATACCACAAGAAATCTG+GGG	+	Chr5:5089912-5089931	None:intergenic	30.0%
AAGATGATAGTAAACCACTA+TGG	-	Chr5:5088873-5088892	MsG0580024450.01.T01:CDS	30.0%
AAGTGAAATAACATTCACTG+AGG	-	Chr5:5094912-5094931	MsG0580024450.01.T01:CDS	30.0%
AATCAGAAGATTTGCATAGT+TGG	-	Chr5:5092982-5093001	MsG0580024450.01.T01:intron	30.0%
AATGATGATAACCTTGGAAA+AGG	-	Chr5:5093224-5093243	MsG0580024450.01.T01:intron	30.0%
ACACCTAATATATAGGGTTA+TGG	-	Chr5:5092567-5092586	MsG0580024450.01.T01:intron	30.0%
AGATTGAAGTTATTGTTCAG+TGG	-	Chr5:5094707-5094726	MsG0580024450.01.T01:CDS	30.0%
AGTTCATCTTCTCTTTACAA+AGG	+	Chr5:5090718-5090737	None:intergenic	30.0%
ATAGTGGTTTACTATCATCT+TGG	+	Chr5:5088874-5088893	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	5088821	5095077	5088821	ID=MsG0580024450.01;Name=MsG0580024450.01
Chr5	mRNA	5088821	5095077	5088821	ID=MsG0580024450.01.T01;Parent=MsG0580024450.01;Name=MsG0580024450.01.T01;_AED=0.40;_eAED=0.40;_QI=0\|0\|0\|0.5\|1\|1\|4\|0\|921
Chr5	exon	5094625	5095077	5094625	ID=MsG0580024450.01.T01:exon:1432;Parent=MsG0580024450.01.T01
Chr5	exon	5094309	5094371	5094309	ID=MsG0580024450.01.T01:exon:1431;Parent=MsG0580024450.01.T01
Chr5	exon	5092058	5092101	5092058	ID=MsG0580024450.01.T01:exon:1430;Parent=MsG0580024450.01.T01
Chr5	exon	5088821	5091026	5088821	ID=MsG0580024450.01.T01:exon:1429;Parent=MsG0580024450.01.T01
Chr5	CDS	5094625	5095077	5094625	ID=MsG0580024450.01.T01:cds;Parent=MsG0580024450.01.T01
Chr5	CDS	5094309	5094371	5094309	ID=MsG0580024450.01.T01:cds;Parent=MsG0580024450.01.T01
Chr5	CDS	5092058	5092101	5092058	ID=MsG0580024450.01.T01:cds;Parent=MsG0580024450.01.T01
Chr5	CDS	5088821	5091026	5088821	ID=MsG0580024450.01.T01:cds;Parent=MsG0580024450.01.T01

Gene Sequence

>MsG0580024450.01.T01

ATGCCTCCAATAGAAGAAAGTGTTACTAGTTGGTTTGCTTCAAAAGAACCCCAAGATGATAGTAAACCACTATGGAGATTTGTCACTGTTGTGCAGAATAATGATTCTGCAGGTGGAAACAAGCTTTGGAAGTGCAACTTTTGTCAAAAAGAGGTGAGGAGTTCATACTCTATAGCGAGATTTCACTTATTGAAAATTGTTGGTGAAGGAGTTCAGGTATGTTCTTCATCATGTTCTGAGAGAAATTGGAGTACTTACTCTTTTATTCAATCTTTGAAAAGAAATAAAATGGATCGAAAAAGGGCTGAAGATTTGGTTTATGTGCATACTAATGTTGGAGTTGGAATTGAATTAGCTGAGTTATCTTTAGATGAACCGGAGTTGGAGGCTACAATGTTCTTTGATGATGGAAACGGAGGAGAGGAGACCGATACAATCCGTGTTTCCACTGAACCGTATCGTATCGGGAATTTTGCAAATTTTTCCGTATCGCCGTATCGGTATCGTATCGTATCGACGATTTTGGGGCCTCCAAAACCAGTAAAAGAAGACTCGGATGTCTTCAACCAAATTACATCAGTATTTGCTGCAGAGGAGAATCAAGAGCATAATCACAACTTAATGACATACATTGTTCATGTCAAAAAATCAGAAAATTTTGCTTCCTTTCAATCAGAAGATTTGCATAGTTGGTACCATTCATTTCTTCCACAAAAATTTCCTCACAAGGACAGAATGGTTTTCTCTTACCGCCATGTAGCCTCTGGATTTGCAGTGAAGCTGACACCAGAAGAGGCCATGTCTCTTCAAGAGAAAGATGAAATTTTGTTAGCAAGACCTGAAAGGACACTTTCATTACACACAACTCACAGTCCAACTTTCTTGGGTCTGAAGCAAGGGCAAGGGTTGTGGAATGATGATAACCTTGGAAAAGGTGTCATAATTGGAGTCATAGACACAGGAATATACCCTTATCATCCATCATTCAACGATGAAGGAATGCCGCCACCACCTGCAAAATGGAAAGGCCATTGCGAATTCACTGGAGGGAAAATATGCAATAATAAGCTCATCGGTGCAAGAAGTTTAGTCAAAAGCACGATTCCAGAGCTTCCATTTGAAAAACATTTCCATGGAACACACACTGCTGCTGAGGCTGCAGGAAGATTCGTAGAAGATGCAAGTGTTTTTGGTAATGCTAAAGGTGTAGCAGCCGGTATGGCACCTAATGCTCACATGGCAATGTACAAAGTTTGTACCGATAACATTCAATGCGCTGAAAGTTCTATCTTAGCTGCAATGGATATTGCTATTGAAGATGGTGTAGATGTTCTATCCCTTTCACTTGGTTTAGGTTCTCTTCCATTCTTTGAAGACCCAATTGCAATTGGTGCTTTTGCTGCTACTCAAAATGGTGTTTTTGTTAGTTGCTCTGCTGCAAACTCTGGTCCTGGATACAGCACTCTCTCCAATGAAGCTCCTTGGATCCTTACCGTTGGTGCCAGCACAATTGATAGAAAAATTGTAGCATCAGCAAAGCTAGGAAATGGTGAAGAATATGAAGGTGAAACGTTGTTCCAACCCAAAGACTTTTCTCAACAATTATTGCCACTTGTGTATCCAGGTTCATTTGGATATGGAAACCAAGCACAGAATCAGTCCTTGTGTTTACCAGGATCCTTAAAGAGCATTGATTTAAGTGGAAAAGTAGTGCTGTGTGATGTTGGAGGACGTGTTTCAACCATTGTGAAAGGACAAGAAGTTCTAAATTCAGGCGGTGTTGCTATGATCCTTGCAAATTCAGAAACACTTGGTTTCAGCACTTCTGCTACGGCTCATGTTTTACCTGCGGTTCAAGTGAGTTACACTGCTGGTTTAACAATCAAAGATTACATTAACTCAACCTACAATCCATCAGCAACATTGTTATTCAAAGGAACAGTAATTGGTGATTCCCTCGCACCTTCTGTTGTTTACTTTTCTTCAAGAGGACCAAGCCAAGAAAGTCCGGGAATTCTTAAACCTGACATCATTGGTCCAGGTGTCAACATTCTAGCTGCATGGGGTGTTTCTGTAGACAACAAAATTCCAGCTTTTAACATTGTTTCCGGTACTTCAATGTCTTGTCCTCACCTAAGTGGTATTGCTGCATTGATCAAAAGTTCTCACCCTGATTGGTCGCCAGCCGCTATAAAATCAGCAATCATGACAACTGCAAATACTCTCAACCTCGGCGGGATCCCTATACTGGATCAAAGGCTTTTGCCGGCTGATATTTTCGCTACCGGTGCAGGACATGTTAATCCTGTTAAAGCAAATGATCCCGGTCTTGTTTATGATATTCAACCTGAAGATTATGTTCCTTATTTGTGTGGTTTGGGTTATACTGATAAAGAGATTGAAGTTATTGTTCAGTGGAAAGTGAAGTGTTCTAATGTGAAAAGTATACCAGAAGCTCAACTGAATTATCCTTCTTTCTCTATTCTGTTGGGGTCAGATTCACAGTATTATACCAGAACCTTGACTAATGTTGGGTTTGCAAATTCAACATATAGAGTTGAACTTGAAGTACCTTTGGCTTTGGGTATGAGTGTTAATCCAAGTGAAATAACATTCACTGAGGTAAATGAGAAGGTTAGTTTCTCTGTTGAATTTATACCACAAATAAAGGAAAACAGAAGGAATCAAACTTTCGCTCAGGGTTCTCTCACTTGGGTGTCTGATAAACATGTTGTTAGGATACCAATATCTGTCATTTTTAAGTGA

Protein sequence

>MsG0580024450.01.T01

MPPIEESVTSWFASKEPQDDSKPLWRFVTVVQNNDSAGGNKLWKCNFCQKEVRSSYSIARFHLLKIVGEGVQVCSSSCSERNWSTYSFIQSLKRNKMDRKRAEDLVYVHTNVGVGIELAELSLDEPELEATMFFDDGNGGEETDTIRVSTEPYRIGNFANFSVSPYRYRIVSTILGPPKPVKEDSDVFNQITSVFAAEENQEHNHNLMTYIVHVKKSENFASFQSEDLHSWYHSFLPQKFPHKDRMVFSYRHVASGFAVKLTPEEAMSLQEKDEILLARPERTLSLHTTHSPTFLGLKQGQGLWNDDNLGKGVIIGVIDTGIYPYHPSFNDEGMPPPPAKWKGHCEFTGGKICNNKLIGARSLVKSTIPELPFEKHFHGTHTAAEAAGRFVEDASVFGNAKGVAAGMAPNAHMAMYKVCTDNIQCAESSILAAMDIAIEDGVDVLSLSLGLGSLPFFEDPIAIGAFAATQNGVFVSCSAANSGPGYSTLSNEAPWILTVGASTIDRKIVASAKLGNGEEYEGETLFQPKDFSQQLLPLVYPGSFGYGNQAQNQSLCLPGSLKSIDLSGKVVLCDVGGRVSTIVKGQEVLNSGGVAMILANSETLGFSTSATAHVLPAVQVSYTAGLTIKDYINSTYNPSATLLFKGTVIGDSLAPSVVYFSSRGPSQESPGILKPDIIGPGVNILAAWGVSVDNKIPAFNIVSGTSMSCPHLSGIAALIKSSHPDWSPAAIKSAIMTTANTLNLGGIPILDQRLLPADIFATGAGHVNPVKANDPGLVYDIQPEDYVPYLCGLGYTDKEIEVIVQWKVKCSNVKSIPEAQLNYPSFSILLGSDSQYYTRTLTNVGFANSTYRVELEVPLALGMSVNPSEITFTEVNEKVSFSVEFIPQIKENRRNQTFAQGSLTWVSDKHVVRIPISVIFK*