AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030607.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030607.01.T01 MTR_6g007757 94.398 357 13 2 1 356 1 351 0.0 651
MsG0680030607.01.T01 MTR_6g007743 80.337 356 63 2 1 356 1 349 0.0 561
MsG0680030607.01.T01 MTR_6g007747 78.090 356 69 2 1 356 1 347 0.0 525
MsG0680030607.01.T01 MTR_6g007750 79.330 358 66 3 1 356 1 352 0.0 523
MsG0680030607.01.T01 MTR_6g007740 78.090 356 71 2 1 356 1 349 0.0 520
MsG0680030607.01.T01 MTR_6g007757 94.275 262 9 1 1 262 1 256 9.44e-172 479
MsG0680030607.01.T01 MTR_6g007753 77.811 338 63 4 24 356 303 633 3.27e-171 491
MsG0680030607.01.T01 MTR_6g007753 67.135 356 70 3 1 356 1 309 3.37e-150 438
MsG0680030607.01.T01 MTR_0103s0090 55.337 356 153 4 1 356 1 350 4.65e-131 379
MsG0680030607.01.T01 MTR_6g007760 56.051 314 133 3 1 314 1 309 4.34e-115 337
MsG0680030607.01.T01 MTR_0103s0090 56.274 263 111 2 94 356 1 259 4.31e-98 292
MsG0680030607.01.T01 MTR_1g014510 43.020 351 195 4 8 355 7 355 8.96e-92 282
MsG0680030607.01.T01 MTR_4g106720 41.143 350 199 5 9 356 8 352 3.04e-81 252
MsG0680030607.01.T01 MTR_5g034980 44.514 319 173 3 17 335 12 326 1.87e-78 244
MsG0680030607.01.T01 MTR_3g090550 42.609 345 187 6 12 356 6 339 1.01e-76 240
MsG0680030607.01.T01 MTR_5g034910 42.903 310 167 3 29 335 24 326 8.79e-73 229
MsG0680030607.01.T01 MTR_5g034990 40.000 330 188 5 28 356 30 350 5.35e-70 223
MsG0680030607.01.T01 MTR_5g034930 40.058 342 199 4 15 356 9 344 1.80e-68 219
MsG0680030607.01.T01 MTR_5g034970 41.745 321 170 4 15 335 10 313 1.55e-61 201
MsG0680030607.01.T01 MTR_2g007970 35.650 331 204 6 12 338 11 336 3.33e-50 172
MsG0680030607.01.T01 MTR_3g072560 35.463 313 176 6 37 339 43 339 5.56e-50 172
MsG0680030607.01.T01 MTR_2g027030 35.455 330 204 6 9 334 8 332 6.14e-50 171
MsG0680030607.01.T01 MTR_4g094362 31.858 339 221 6 13 346 15 348 3.55e-49 169
MsG0680030607.01.T01 MTR_3g095460 32.344 337 225 3 13 348 6 340 3.84e-49 168
MsG0680030607.01.T01 MTR_5g034980 44.017 234 127 3 29 262 24 253 6.07e-49 167
MsG0680030607.01.T01 MTR_2g007990 33.333 318 195 8 30 339 33 341 1.18e-48 169
MsG0680030607.01.T01 MTR_0096s0100 30.000 320 214 5 37 354 43 354 2.38e-48 167
MsG0680030607.01.T01 MTR_3g095450 32.500 320 206 4 25 339 20 334 6.58e-48 166
MsG0680030607.01.T01 MTR_4g094340 32.759 348 223 6 13 354 10 352 3.53e-46 161
MsG0680030607.01.T01 MTR_8g041390 30.539 334 225 5 17 346 18 348 6.12e-46 161
MsG0680030607.01.T01 MTR_4g094340 33.837 331 208 6 30 354 45 370 7.95e-46 160
MsG0680030607.01.T01 MTR_3g012420 34.076 314 195 7 38 346 43 349 9.41e-45 158
MsG0680030607.01.T01 MTR_2g007960 30.028 363 241 6 1 355 1 358 1.12e-44 158
MsG0680030607.01.T01 MTR_3g095420 29.217 332 227 3 13 339 8 336 1.31e-44 157
MsG0680030607.01.T01 MTR_1g038560 29.738 343 223 9 14 350 4 334 3.12e-44 155
MsG0680030607.01.T01 MTR_7g111830 32.308 325 205 6 32 351 27 341 4.70e-44 156
MsG0680030607.01.T01 MTR_1g030400 34.091 308 195 5 32 334 27 331 5.08e-44 155
MsG0680030607.01.T01 MTR_2g016710 29.483 329 222 5 30 355 26 347 5.88e-44 155
MsG0680030607.01.T01 MTR_4g094360 30.303 363 219 6 13 356 15 362 8.71e-44 155
MsG0680030607.01.T01 MTR_1g030600 31.561 301 201 4 37 335 43 340 1.65e-43 155
MsG0680030607.01.T01 MTR_1g074120 31.143 350 229 8 7 353 11 351 5.56e-43 152
MsG0680030607.01.T01 MTR_1g074160 32.722 327 193 9 32 345 33 345 7.76e-43 152
MsG0680030607.01.T01 MTR_3g072530 32.381 315 199 6 38 346 40 346 1.01e-42 152
MsG0680030607.01.T01 MTR_1g068630 34.091 308 192 6 30 334 33 332 1.07e-42 152
MsG0680030607.01.T01 MTR_1g074020 34.505 313 179 10 37 340 38 333 1.22e-42 152
MsG0680030607.01.T01 MTR_8g092650 31.672 341 223 4 13 347 6 342 1.71e-42 151
MsG0680030607.01.T01 MTR_1g030580 31.776 321 203 5 37 353 41 349 3.01e-42 151
MsG0680030607.01.T01 MTR_2g007260 33.233 331 206 6 16 339 22 344 4.07e-42 152
MsG0680030607.01.T01 MTR_3g072500 32.075 318 198 7 37 345 45 353 1.79e-41 149
MsG0680030607.01.T01 MTR_6g036450 34.062 320 200 7 25 339 31 344 2.68e-41 148
MsG0680030607.01.T01 MTR_4g094340 34.397 282 174 5 82 354 7 286 4.37e-41 145
MsG0680030607.01.T01 MTR_2g102340 32.727 330 201 9 30 349 30 348 5.81e-41 147
MsG0680030607.01.T01 MTR_1g070175 28.363 342 232 5 5 345 9 338 8.53e-41 147
MsG0680030607.01.T01 MTR_1g114210 30.619 307 204 7 30 334 29 328 3.80e-40 145
MsG0680030607.01.T01 MTR_4g094360 31.988 322 181 6 59 356 8 315 9.17e-40 144
MsG0680030607.01.T01 MTR_1g073990 31.627 332 217 5 7 335 11 335 4.47e-39 142
MsG0680030607.01.T01 MTR_3g072500 33.984 256 156 4 97 345 1 250 6.00e-39 140
MsG0680030607.01.T01 MTR_3g095440 31.464 321 208 5 25 339 20 334 9.55e-39 141
MsG0680030607.01.T01 MTR_1g051120 31.445 353 223 10 7 350 11 353 1.09e-38 141
MsG0680030607.01.T01 MTR_4g094342 30.061 326 223 4 30 352 31 354 2.67e-38 140
MsG0680030607.01.T01 MTR_7g100050 32.468 308 199 6 30 334 31 332 7.02e-38 139
MsG0680030607.01.T01 MTR_2g065550 32.326 331 213 5 11 337 9 332 4.92e-37 137
MsG0680030607.01.T01 MTR_1g074070 31.498 327 204 10 32 352 36 348 6.34e-37 136
MsG0680030607.01.T01 MTR_8g006010 32.907 313 200 5 32 340 30 336 8.41e-37 137
MsG0680030607.01.T01 MTR_4g094352 31.138 334 213 8 12 334 11 338 8.30e-36 134
MsG0680030607.01.T01 MTR_1g023180 30.247 324 200 6 32 335 41 358 5.38e-35 132
MsG0680030607.01.T01 MTR_6g081840 32.258 279 184 4 71 346 67 343 1.83e-34 130
MsG0680030607.01.T01 MTR_3g112480 29.524 315 209 3 32 335 40 352 2.74e-34 130
MsG0680030607.01.T01 MTR_4g129650 30.284 317 208 6 26 337 21 329 5.20e-34 129
MsG0680030607.01.T01 MTR_2g016710 29.123 285 194 4 30 313 26 303 6.86e-34 127
MsG0680030607.01.T01 MTR_4g094360 28.981 314 194 5 13 312 15 313 3.81e-33 125
MsG0680030607.01.T01 MTR_5g089390 29.110 292 192 5 46 334 48 327 5.97e-33 125
MsG0680030607.01.T01 MTR_8g006120 31.437 334 218 6 11 339 9 336 2.52e-32 124
MsG0680030607.01.T01 MTR_3g112480 30.035 283 184 3 64 335 18 297 4.42e-32 123
MsG0680030607.01.T01 MTR_8g006090 31.564 358 233 7 4 354 2 354 6.10e-32 123
MsG0680030607.01.T01 MTR_8g092650 30.290 241 161 2 112 347 26 264 3.66e-31 119
MsG0680030607.01.T01 MTR_5g021160 30.464 302 198 5 38 334 33 327 7.02e-31 120
MsG0680030607.01.T01 MTR_3g019050 34.413 247 148 4 94 334 99 337 1.85e-30 120
MsG0680030607.01.T01 MTR_3g072520 29.193 322 220 6 34 351 31 348 5.35e-30 118
MsG0680030607.01.T01 MTR_1g052205 30.328 244 151 6 117 354 2 232 6.11e-30 115
MsG0680030607.01.T01 MTR_5g025340 29.014 355 223 9 23 354 13 361 2.09e-29 117
MsG0680030607.01.T01 MTR_5g068790 28.431 306 204 4 36 334 42 339 4.00e-29 116
MsG0680030607.01.T01 MTR_5g069040 28.758 306 205 4 36 334 42 341 5.70e-29 115
MsG0680030607.01.T01 MTR_3g095440 30.588 255 165 5 13 260 6 255 1.30e-28 112
MsG0680030607.01.T01 MTR_5g025400 27.747 364 222 11 23 356 14 366 2.93e-28 114
MsG0680030607.01.T01 MTR_5g012650 32.595 316 179 11 55 354 51 348 2.95e-28 113
MsG0680030607.01.T01 MTR_1g014790 43.802 121 67 1 91 211 41 160 4.20e-28 109
MsG0680030607.01.T01 MTR_5g021160 31.818 242 156 3 97 334 8 244 6.81e-28 110
MsG0680030607.01.T01 MTR_8g006090 31.984 247 161 3 112 354 31 274 1.42e-27 109
MsG0680030607.01.T01 MTR_5g025370 27.616 344 218 9 32 354 30 363 2.63e-27 111
MsG0680030607.01.T01 MTR_4g129650 31.111 225 149 2 110 334 1 219 3.05e-27 108
MsG0680030607.01.T01 MTR_5g025290 27.219 338 210 9 25 335 44 372 3.29e-27 111
MsG0680030607.01.T01 MTR_5g025290 27.219 338 210 9 25 335 16 344 3.70e-27 110
MsG0680030607.01.T01 MTR_8g006050 31.077 325 201 8 22 342 4 309 6.49e-27 109
MsG0680030607.01.T01 MTR_1g074160 32.353 238 138 8 32 260 33 256 1.98e-25 103
MsG0680030607.01.T01 MTR_5g025330 27.900 319 210 7 32 335 29 342 5.07e-25 106
MsG0680030607.01.T01 MTR_4g100840 28.793 323 213 9 38 354 40 351 1.40e-24 103
MsG0680030607.01.T01 MTR_4g094340 32.218 239 154 5 30 265 27 260 5.27e-24 99.8
MsG0680030607.01.T01 MTR_8g072350 25.749 334 220 8 25 335 14 342 7.42e-24 101
MsG0680030607.01.T01 MTR_4g094340 32.218 239 154 5 30 265 45 278 1.24e-23 99.4
MsG0680030607.01.T01 MTR_3g072500 29.185 233 149 6 37 262 45 268 4.60e-21 92.0
MsG0680030607.01.T01 MTR_3g112480 28.444 225 151 1 121 335 1 225 6.28e-21 91.3
MsG0680030607.01.T01 MTR_8g006090 29.167 312 213 5 4 312 2 308 1.29e-20 91.3
MsG0680030607.01.T01 MTR_2g102340 30.508 236 146 8 30 258 56 280 2.36e-20 90.9
MsG0680030607.01.T01 MTR_5g021160 33.158 190 115 5 38 222 33 215 1.78e-18 84.7
MsG0680030607.01.T01 MTR_3g072530 29.528 254 141 9 38 256 40 290 2.43e-18 84.7
MsG0680030607.01.T01 MTR_4g094340 34.973 183 111 5 30 209 45 222 9.80e-18 81.6
MsG0680030607.01.T01 MTR_1g051120 28.986 207 134 7 14 215 17 215 2.72e-16 77.4
MsG0680030607.01.T01 MTR_1g051120 29.560 159 109 2 7 164 11 167 6.02e-16 77.4
MsG0680030607.01.T01 MTR_3g072500 30.120 166 100 6 37 195 45 201 9.44e-15 73.2
MsG0680030607.01.T01 MTR_4g094342 31.013 158 95 4 30 175 31 186 1.16e-14 73.6
MsG0680030607.01.T01 MTR_8g006090 30.249 281 181 7 4 281 2 270 1.24e-13 70.9
MsG0680030607.01.T01 MTR_1g061900 64.151 53 13 1 140 192 46 92 1.67e-11 62.4
MsG0680030607.01.T01 MTR_4g094348 36.885 122 71 3 102 217 11 132 3.07e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030607.01.T01 AT3G28050 46.070 369 177 7 1 356 1 360 3.38e-102 306
MsG0680030607.01.T01 AT5G40240 46.041 341 176 4 10 346 17 353 1.24e-94 286
MsG0680030607.01.T01 AT5G40240 46.041 341 176 4 10 346 17 353 1.24e-94 286
MsG0680030607.01.T01 AT5G40240 46.041 341 176 4 10 346 31 367 3.48e-94 286
MsG0680030607.01.T01 AT5G40230 43.539 356 194 3 2 356 9 358 6.10e-92 280
MsG0680030607.01.T01 AT5G40210 40.176 341 182 4 17 356 17 336 1.44e-78 244
MsG0680030607.01.T01 AT4G15540 42.229 341 180 4 2 340 5 330 3.28e-75 236
MsG0680030607.01.T01 AT4G15540 42.229 341 180 4 2 340 5 330 3.28e-75 236
MsG0680030607.01.T01 AT3G28080 42.136 337 188 5 21 356 22 352 5.30e-69 220
MsG0680030607.01.T01 AT3G28130 43.235 340 178 7 21 356 21 349 7.78e-68 217
MsG0680030607.01.T01 AT3G28100 40.979 327 186 5 29 354 30 350 1.22e-67 217
MsG0680030607.01.T01 AT3G28070 40.979 327 185 5 29 354 33 352 2.31e-63 206
MsG0680030607.01.T01 AT3G28080 40.653 337 185 5 21 356 22 344 1.53e-62 204
MsG0680030607.01.T01 AT3G28080 41.887 265 148 4 93 356 4 263 3.14e-57 187
MsG0680030607.01.T01 AT3G28080 41.887 265 148 4 93 356 4 263 3.14e-57 187
MsG0680030607.01.T01 AT3G28080 41.887 265 148 4 93 356 4 263 3.14e-57 187
MsG0680030607.01.T01 AT3G28080 41.887 265 148 4 93 356 4 263 3.14e-57 187
MsG0680030607.01.T01 AT3G28070 40.149 269 142 5 93 354 4 260 8.19e-57 186
MsG0680030607.01.T01 AT3G28130 44.309 246 128 4 93 334 6 246 6.92e-55 181
MsG0680030607.01.T01 AT3G28130 44.309 246 128 4 93 334 6 246 6.92e-55 181
MsG0680030607.01.T01 AT4G08300 33.333 360 219 9 9 356 6 356 3.44e-52 177
MsG0680030607.01.T01 AT3G30340 32.317 328 213 4 30 352 28 351 3.83e-51 174
MsG0680030607.01.T01 AT1G21890 33.025 324 204 4 37 353 35 352 5.74e-51 174
MsG0680030607.01.T01 AT3G28070 40.351 285 166 4 29 312 33 314 1.05e-49 169
MsG0680030607.01.T01 AT1G44800 33.333 306 190 5 37 337 35 331 8.66e-47 163
MsG0680030607.01.T01 AT1G70260 31.232 349 222 4 10 347 9 350 1.15e-45 160
MsG0680030607.01.T01 AT3G28100 42.735 234 131 3 29 261 30 261 2.86e-45 156
MsG0680030607.01.T01 AT5G07050 33.333 312 184 6 38 335 43 344 6.77e-45 159
MsG0680030607.01.T01 AT3G28130 43.033 244 130 4 21 260 21 259 2.45e-43 151
MsG0680030607.01.T01 AT2G39510 34.211 342 193 7 32 353 27 356 1.31e-42 152
MsG0680030607.01.T01 AT2G40900 31.731 312 198 5 37 345 35 334 6.10e-42 151
MsG0680030607.01.T01 AT3G28080 38.462 234 132 5 127 356 1 226 6.94e-42 146
MsG0680030607.01.T01 AT5G13670 29.619 341 222 8 13 347 8 336 1.25e-41 149
MsG0680030607.01.T01 AT1G21890 32.746 284 182 3 37 313 35 316 6.41e-41 147
MsG0680030607.01.T01 AT1G01070 30.462 325 217 6 14 334 16 335 6.82e-41 147
MsG0680030607.01.T01 AT4G28040 31.751 337 210 6 16 350 13 331 1.06e-40 147
MsG0680030607.01.T01 AT4G28040 31.751 337 210 6 16 350 13 331 1.06e-40 147
MsG0680030607.01.T01 AT4G28040 31.751 337 210 6 16 350 13 331 1.06e-40 147
MsG0680030607.01.T01 AT4G28040 31.751 337 210 6 16 350 13 331 1.06e-40 147
MsG0680030607.01.T01 AT4G28040 31.751 337 210 6 16 350 13 331 1.06e-40 147
MsG0680030607.01.T01 AT3G28070 36.170 235 131 5 127 354 1 223 1.06e-40 143
MsG0680030607.01.T01 AT2G37460 31.579 323 210 6 30 349 32 346 2.16e-40 146
MsG0680030607.01.T01 AT4G08290 30.581 327 212 6 34 353 33 351 2.55e-40 146
MsG0680030607.01.T01 AT3G28130 41.509 212 115 4 127 334 1 207 4.90e-40 141
MsG0680030607.01.T01 AT1G11450 29.464 336 227 7 13 345 15 343 4.93e-40 145
MsG0680030607.01.T01 AT3G56620 31.438 299 189 6 37 331 35 321 1.59e-39 144
MsG0680030607.01.T01 AT5G64700 31.269 323 205 4 32 344 27 342 1.78e-39 143
MsG0680030607.01.T01 AT4G01430 28.235 340 229 8 14 345 9 341 1.95e-39 143
MsG0680030607.01.T01 AT1G60050 29.973 367 239 9 1 354 4 365 4.06e-39 143
MsG0680030607.01.T01 AT1G09380 31.023 303 203 4 32 331 27 326 7.19e-39 142
MsG0680030607.01.T01 AT1G01070 31.522 276 182 4 61 334 18 288 4.10e-38 139
MsG0680030607.01.T01 AT1G11450 30.132 302 202 6 46 345 5 299 1.30e-37 137
MsG0680030607.01.T01 AT1G11460 28.923 325 223 5 13 334 15 334 1.83e-37 137
MsG0680030607.01.T01 AT3G28100 47.283 184 95 2 29 212 30 211 9.39e-37 133
MsG0680030607.01.T01 AT1G11450 29.866 298 200 6 50 345 2 292 1.89e-36 134
MsG0680030607.01.T01 AT1G43650 31.861 317 207 4 30 345 24 332 5.72e-35 131
MsG0680030607.01.T01 AT3G28130 46.154 195 97 3 21 212 21 210 1.44e-34 127
MsG0680030607.01.T01 AT1G68170 30.178 338 227 6 1 334 1 333 2.34e-34 130
MsG0680030607.01.T01 AT4G01440 28.526 312 209 7 36 340 32 336 2.49e-34 130
MsG0680030607.01.T01 AT1G75500 29.260 311 209 4 32 335 39 345 2.69e-34 130
MsG0680030607.01.T01 AT1G75500 29.260 311 209 4 32 335 39 345 2.69e-34 130
MsG0680030607.01.T01 AT3G28080 43.810 210 111 3 3 212 9 211 2.75e-34 128
MsG0680030607.01.T01 AT3G28080 43.529 85 45 1 272 356 217 298 2.23e-14 73.2
MsG0680030607.01.T01 AT1G68170 32.143 308 200 6 31 334 21 323 5.89e-34 129
MsG0680030607.01.T01 AT3G53210 30.100 299 204 4 38 335 35 329 7.64e-34 129
MsG0680030607.01.T01 AT3G18200 31.959 291 181 5 61 343 84 365 1.31e-33 128
MsG0680030607.01.T01 AT1G25270 29.503 322 219 5 17 335 7 323 1.33e-33 127
MsG0680030607.01.T01 AT4G30420 30.655 336 217 6 18 347 8 333 7.40e-33 126
MsG0680030607.01.T01 AT4G30420 30.655 336 217 6 18 347 18 343 7.99e-33 126
MsG0680030607.01.T01 AT1G11450 30.588 255 171 4 92 345 2 251 1.06e-31 120
MsG0680030607.01.T01 AT3G30340 32.479 234 153 3 30 262 28 257 1.56e-30 117
MsG0680030607.01.T01 AT4G01430 28.276 290 194 7 30 312 26 308 1.89e-30 118
MsG0680030607.01.T01 AT1G11450 27.393 303 211 6 13 312 15 311 1.04e-29 116
MsG0680030607.01.T01 AT5G45370 27.500 320 214 6 32 349 39 342 2.70e-29 116
MsG0680030607.01.T01 AT3G53210 30.252 238 164 2 98 335 37 272 4.40e-29 114
MsG0680030607.01.T01 AT5G47470 31.596 307 175 8 61 354 79 363 7.14e-29 115
MsG0680030607.01.T01 AT5G47470 31.922 307 174 9 61 354 107 391 9.66e-29 115
MsG0680030607.01.T01 AT5G45370 27.108 332 224 7 32 349 39 366 3.65e-28 113
MsG0680030607.01.T01 AT5G45370 27.108 332 224 7 32 349 39 366 3.65e-28 113
MsG0680030607.01.T01 AT4G01440 27.465 284 195 6 36 315 32 308 4.52e-28 112
MsG0680030607.01.T01 AT3G18200 33.195 241 148 3 110 343 1 235 4.59e-28 110
MsG0680030607.01.T01 AT5G47470 31.615 291 165 7 61 338 107 376 1.86e-27 111
MsG0680030607.01.T01 AT4G01440 28.017 232 159 3 113 340 1 228 3.02e-26 105
MsG0680030607.01.T01 AT4G01440 28.017 232 159 3 113 340 1 228 3.02e-26 105
MsG0680030607.01.T01 AT2G37450 29.524 315 185 7 37 342 33 319 3.99e-26 107
MsG0680030607.01.T01 AT2G37450 32.000 250 155 5 102 342 4 247 4.19e-26 105
MsG0680030607.01.T01 AT4G08290 31.466 232 144 6 34 258 33 256 2.92e-25 103
MsG0680030607.01.T01 AT4G01450 27.463 335 231 4 13 345 10 334 4.11e-24 102
MsG0680030607.01.T01 AT5G64700 31.381 239 147 4 32 260 27 258 6.32e-24 99.8
MsG0680030607.01.T01 AT3G45870 26.537 309 211 6 32 329 31 334 6.56e-24 101
MsG0680030607.01.T01 AT4G19185 25.225 333 223 7 25 335 25 353 1.50e-23 100
MsG0680030607.01.T01 AT4G01450 27.574 272 185 4 13 282 10 271 2.51e-23 99.4
MsG0680030607.01.T01 AT3G28080 49.153 118 59 1 93 210 4 120 1.00e-22 95.1
MsG0680030607.01.T01 AT3G28080 43.529 85 45 1 272 356 128 209 9.35e-15 72.8
MsG0680030607.01.T01 AT4G01440 30.131 229 149 6 36 260 32 253 2.11e-22 95.5
MsG0680030607.01.T01 AT4G19185 25.385 260 177 5 90 335 19 275 5.15e-22 95.5
MsG0680030607.01.T01 AT5G45370 26.316 266 181 5 97 349 1 264 9.39e-22 94.0
MsG0680030607.01.T01 AT5G45370 26.316 266 181 5 97 349 1 264 9.39e-22 94.0
MsG0680030607.01.T01 AT3G53210 32.086 187 122 4 38 223 35 217 3.91e-21 92.0
MsG0680030607.01.T01 AT4G01430 27.404 208 143 3 142 345 1 204 4.05e-21 90.9
MsG0680030607.01.T01 AT4G24980 28.030 264 140 6 73 335 25 239 6.02e-21 91.7
MsG0680030607.01.T01 AT4G01450 28.400 250 167 4 13 260 10 249 7.43e-21 91.3
MsG0680030607.01.T01 AT3G28060 34.752 141 82 3 173 312 23 154 6.71e-19 83.2
MsG0680030607.01.T01 AT1G43650 32.314 229 146 5 32 259 26 246 7.76e-19 85.5
MsG0680030607.01.T01 AT4G16620 28.525 305 177 9 54 338 51 334 8.26e-19 87.0
MsG0680030607.01.T01 AT3G45870 25.000 292 203 6 32 312 31 317 3.33e-18 84.7
MsG0680030607.01.T01 AT2G37450 30.088 226 143 5 126 342 61 280 5.19e-18 84.0
MsG0680030607.01.T01 AT4G16620 27.626 257 149 6 99 338 1 237 1.61e-17 81.6
MsG0680030607.01.T01 AT4G16620 27.626 257 149 6 99 338 1 237 1.61e-17 81.6
MsG0680030607.01.T01 AT4G01450 29.358 218 142 4 13 228 10 217 2.48e-17 80.9
MsG0680030607.01.T01 AT3G45870 24.590 244 170 4 95 329 21 259 1.09e-14 74.3
MsG0680030607.01.T01 AT5G45370 24.681 235 162 5 128 349 74 306 5.50e-14 72.4
MsG0680030607.01.T01 AT3G45870 25.217 230 157 5 32 250 31 256 9.29e-13 68.2
MsG0680030607.01.T01 AT3G28070 51.020 98 47 1 29 126 33 129 1.39e-11 63.9

Find 65 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGTTAGCTGTCACTTTC+AGG 0.141562 6:+6012146 MsG0680030607.01.T01:CDS
TGCCTGGGCAATACACTTAA+AGG 0.164042 6:+6014194 MsG0680030607.01.T01:CDS
CAGATGTTCATCTCAGATTC+TGG 0.176104 6:+6012051 MsG0680030607.01.T01:intron
TATTCAAGTGCTTGGAAAAT+AGG 0.240316 6:+6013679 MsG0680030607.01.T01:CDS
AGTAGTAATGCTAAGGTAAT+TGG 0.253696 6:+6012715 MsG0680030607.01.T01:CDS
ATATGCAAAAGTGTGCTTCT+TGG 0.274322 6:+6011337 MsG0680030607.01.T01:CDS
TTGGTCTTTATGCTGTATTA+TGG 0.276154 6:+6014705 MsG0680030607.01.T01:CDS
TGCTTCAGCAATTGCGAATC+TGG 0.291959 6:+6012108 MsG0680030607.01.T01:CDS
AAGACTAAAGTTAGTTCATC+TGG 0.299799 6:-6013598 None:intergenic
TGCAAATTGTTATCTCTGTT+TGG 0.303819 6:+6014247 MsG0680030607.01.T01:CDS
AAGACCAATTGAGATTATTA+TGG 0.308192 6:-6014690 None:intergenic
TGGTCTTTATGCTGTATTAT+GGG 0.328682 6:+6014706 MsG0680030607.01.T01:CDS
AGTGTGCTTCTTGGAGCAAT+AGG 0.346723 6:+6011346 MsG0680030607.01.T01:CDS
CAGTTCCATATTCAAGTGCT+TGG 0.376650 6:+6013671 MsG0680030607.01.T01:CDS
ATTGTTATCTCTGTTTGGTT+GGG 0.389139 6:+6014252 MsG0680030607.01.T01:CDS
TCAAGTCTGTGGATTCAAGC+TGG 0.406376 6:+6012851 MsG0680030607.01.T01:CDS
GCCTGGGCAATACACTTAAA+GGG 0.409579 6:+6014195 MsG0680030607.01.T01:CDS
GATTCAAGCTGGGCCATTGC+TGG 0.410455 6:+6012862 MsG0680030607.01.T01:CDS
TTCAAAGCAGCCACACTTCA+AGG 0.420349 6:+6010930 MsG0680030607.01.T01:CDS
AATTGTTATCTCTGTTTGGT+TGG 0.421782 6:+6014251 MsG0680030607.01.T01:CDS
AGATGTTCATCTCAGATTCT+GGG 0.460667 6:+6012052 MsG0680030607.01.T01:intron
AGAGGAAGATGTTGGTAGCT+TGG 0.463078 6:+6014748 MsG0680030607.01.T01:CDS
GGAGCCATAATAATCTCAAT+TGG 0.466604 6:+6014686 MsG0680030607.01.T01:CDS
CAAAGCAACAGAAGAGATAG+AGG 0.466891 6:+6014730 MsG0680030607.01.T01:CDS
AAGAAGATGGTCTTTGTACA+TGG 0.468732 6:+6010845 MsG0680030607.01.T01:CDS
CGGCTCTAGCTTTGCAGAAG+AGG 0.468815 6:-6014794 None:intergenic
GTGTGCTTCTTGGAGCAATA+GGG 0.485757 6:+6011347 MsG0680030607.01.T01:CDS
CTTCTGGTGAAAAGAGTGAC+AGG 0.503672 6:-6011011 None:intergenic
GAAGAGATAGAGGAAGATGT+TGG 0.505673 6:+6014740 MsG0680030607.01.T01:CDS
CCCCTTTAAGTGTATTGCCC+AGG 0.506998 6:-6014196 None:intergenic
ACAGACTTGAGAAAGTCAAT+TGG 0.519975 6:-6012838 None:intergenic
GCAATTGCTGAAGCAAGTGT+TGG 0.523196 6:-6012100 None:intergenic
TGGTTGGGAGTTATATTCCT+TGG 0.523310 6:+6014267 MsG0680030607.01.T01:CDS
CAAGTCTGTGGATTCAAGCT+GGG 0.528710 6:+6012852 MsG0680030607.01.T01:CDS
GTGATACTCTTCATGTTGGA+AGG 0.531126 6:+6014289 MsG0680030607.01.T01:CDS
CTTGGTGATACTCTTCATGT+TGG 0.540780 6:+6014285 MsG0680030607.01.T01:CDS
AATTGACTTTCTCAAGTCTG+TGG 0.542290 6:+6012840 MsG0680030607.01.T01:CDS
AGATATGATTGTGGCAGTAA+TGG 0.546852 6:-6013629 None:intergenic
ATAATGGAGAAACTGATTGA+AGG 0.548854 6:-6011316 None:intergenic
GGAAGCATAATATCAATAGC+AGG 0.554009 6:+6012736 MsG0680030607.01.T01:CDS
GGTCTTTATGCTGTATTATG+GGG 0.556844 6:+6014707 MsG0680030607.01.T01:CDS
AGTATAAGATGAATTCATGA+TGG 0.563670 6:-6012791 None:intergenic
GAGTAAAAGTAGTAATGCTA+AGG 0.571193 6:+6012708 MsG0680030607.01.T01:CDS
AAGTCAATTGGTTGATGAAG+TGG 0.572248 6:-6012826 None:intergenic
TCATAGCATATAATCACAGC+AGG 0.577064 6:-6010879 None:intergenic
AGACTAAAGTTAGTTCATCT+GGG 0.577091 6:-6013597 None:intergenic
TCAAAGCAGCCACACTTCAA+GGG 0.585251 6:+6010931 MsG0680030607.01.T01:CDS
ACAGAAACATGACAAGAAGA+TGG 0.589480 6:+6010832 None:intergenic
CCTGGGCAATACACTTAAAG+GGG 0.590396 6:+6014196 MsG0680030607.01.T01:CDS
GTCTCTTACAGAAGAAACAA+TGG 0.598395 6:-6013722 None:intergenic
TACAAGTGTAGATATGATTG+TGG 0.602099 6:-6013638 None:intergenic
TGTCAGCAGAATACCAGCAA+TGG 0.614267 6:-6012875 None:intergenic
GCTAACATGAAAGTGAAAGC+AGG 0.619129 6:-6012133 None:intergenic
GATGTTCATCTCAGATTCTG+GGG 0.623409 6:+6012053 MsG0680030607.01.T01:intron
TTTGTGTTGACTTTCTACAA+AGG 0.624165 6:+6012763 MsG0680030607.01.T01:CDS
ATTGTTCATCCCTTGAAGTG+TGG 0.626287 6:-6010940 None:intergenic
ATGGAGAAACTGATTGAAGG+AGG 0.634896 6:-6011313 None:intergenic
TAGCATATAATCACAGCAGG+TGG 0.665624 6:-6010876 None:intergenic
AATTTGCAGTGGCACGAACG+AGG 0.666521 6:-6014232 None:intergenic
ATGCTATGAATGTATTGACA+TGG 0.692356 6:+6010893 MsG0680030607.01.T01:CDS
TTCTGGTGAAAAGAGTGACA+GGG 0.706344 6:-6011010 None:intergenic
CAACATGAAGAGTATCACCA+AGG 0.716520 6:-6014284 None:intergenic
ACAGAGATAACAATTTGCAG+TGG 0.716735 6:-6014243 None:intergenic
CTGGGCAATACACTTAAAGG+GGG 0.717095 6:+6014197 MsG0680030607.01.T01:CDS
AATTGGTTGATGAAGTGGTG+AGG 0.726144 6:-6012821 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAATTAAACCAAAATA+TGG + Chr6:6011418-6011437 MsG0680030607.01.T01:intron 10.0%
!! TAAACAAAAATATACATAAA+TGG - Chr6:6014647-6014666 None:intergenic 10.0%
!! TATGGTTAATTAATATAATA+AGG + Chr6:6013857-6013876 MsG0680030607.01.T01:intron 10.0%
!!! ATATTTTGGTTTAATTATAA+TGG - Chr6:6011419-6011438 None:intergenic 10.0%
!!! ATATTTTGTAATTCTAATTA+CGG + Chr6:6011171-6011190 MsG0680030607.01.T01:intron 10.0%
!! CAAGTTACTATAATATTAAA+AGG - Chr6:6011924-6011943 None:intergenic 15.0%
!!! AATTTTAAATATCTTCTGTT+AGG - Chr6:6012515-6012534 None:intergenic 15.0%
!!! ATATATTTTTGCTAAAATCT+CGG - Chr6:6011155-6011174 None:intergenic 15.0%
!!! ATTTTAAATATCTTCTGTTA+GGG - Chr6:6012514-6012533 None:intergenic 15.0%
!!! CTTTTAATATTATAGTAACT+TGG + Chr6:6011922-6011941 MsG0680030607.01.T01:intron 15.0%
!! CTTTCAATTTAACAAAATCA+TGG - Chr6:6011202-6011221 None:intergenic 20.0%
!! GTTAGTTAATTATAGTTACA+GGG + Chr6:6011962-6011981 MsG0680030607.01.T01:intron 20.0%
!! TGTTAGTTAATTATAGTTAC+AGG + Chr6:6011961-6011980 MsG0680030607.01.T01:intron 20.0%
!! TTAGTTAATTATAGTTACAG+GGG + Chr6:6011963-6011982 MsG0680030607.01.T01:intron 20.0%
!! TTTAATTAAGCTGAATGATA+AGG + Chr6:6012581-6012600 MsG0680030607.01.T01:intron 20.0%
!!! AGTTATTTTTTTCATTTCAC+AGG + Chr6:6013555-6013574 MsG0680030607.01.T01:intron 20.0%
!!! ATAAAATCATCCTGAAATTT+TGG - Chr6:6011727-6011746 None:intergenic 20.0%
!!! ATTTATCATACACCATATTT+TGG - Chr6:6011433-6011452 None:intergenic 20.0%
!!! CATTTTCTCAAAAATGTTAT+CGG + Chr6:6011831-6011850 MsG0680030607.01.T01:intron 20.0%
! AAAAACGAACCAAATCTAAT+AGG + Chr6:6014403-6014422 MsG0680030607.01.T01:intron 25.0%
! AAAAGAGAATTAAGTGAAAG+TGG - Chr6:6013204-6013223 None:intergenic 25.0%
! AAGACCAATTGAGATTATTA+TGG - Chr6:6014693-6014712 None:intergenic 25.0%
! AGTAACAGTATTGTCAATTA+CGG + Chr6:6012301-6012320 MsG0680030607.01.T01:intron 25.0%
! AGTATAAGATGAATTCATGA+TGG - Chr6:6012794-6012813 None:intergenic 25.0%
! ATAAATAATTGTGAACCTTC+TGG - Chr6:6011030-6011049 None:intergenic 25.0%
! ATAACAGGAAAACAAATAAG+TGG - Chr6:6012654-6012673 None:intergenic 25.0%
! ATATATATTAGAGCACGATT+CGG - Chr6:6013988-6014007 None:intergenic 25.0%
! GCTATTGTTAACTGATAATT+AGG + Chr6:6014366-6014385 MsG0680030607.01.T01:intron 25.0%
! GTTATCATTGCAATTAAGAA+TGG + Chr6:6012669-6012688 MsG0680030607.01.T01:intron 25.0%
! TTAAAGAGTCCTATTAGATT+TGG - Chr6:6014415-6014434 None:intergenic 25.0%
! TTACTTGAATTTGTGACAAT+TGG + Chr6:6013151-6013170 MsG0680030607.01.T01:intron 25.0%
! TTCTTAATTGCAATGATAAC+AGG - Chr6:6012669-6012688 None:intergenic 25.0%
! TTGAATATAACAACACATGT+CGG + Chr6:6013080-6013099 MsG0680030607.01.T01:intron 25.0%
! TTGGAACTTCAAAAAAATCA+TGG - Chr6:6013380-6013399 None:intergenic 25.0%
!! GTGATTTTAAACATACACTT+AGG + Chr6:6011221-6011240 MsG0680030607.01.T01:intron 25.0%
!! TATGCATTTTGCAGTATAAT+TGG + Chr6:6014665-6014684 MsG0680030607.01.T01:intron 25.0%
!! TTAAATTTTCCCTTGATCTA+TGG - Chr6:6012566-6012585 None:intergenic 25.0%
!! TTCACTATGGTATATTTTAC+AGG + Chr6:6012915-6012934 MsG0680030607.01.T01:CDS 25.0%
!! TTTCTTAATTTTCGTATTGG+TGG + Chr6:6013175-6013194 MsG0680030607.01.T01:intron 25.0%
!!! ATGATTTGTGTTTCATGTTT+TGG + Chr6:6012008-6012027 MsG0680030607.01.T01:intron 25.0%
!!! GATATTTTCAGTTTGGTTTT+TGG - Chr6:6014443-6014462 None:intergenic 25.0%
!!! GTTTTTTCTAATCCTTGAAT+CGG + Chr6:6011572-6011591 MsG0680030607.01.T01:intron 25.0%
!!! TGATTTGTGTTTCATGTTTT+GGG + Chr6:6012009-6012028 MsG0680030607.01.T01:intron 25.0%
!!! TGTTTTGTTTAGTACATGTT+CGG + Chr6:6011095-6011114 MsG0680030607.01.T01:intron 25.0%
AAATATACGCTTAGAAATCG+TGG + Chr6:6014035-6014054 MsG0680030607.01.T01:intron 30.0%
AAGACTAAAGTTAGTTCATC+TGG - Chr6:6013601-6013620 None:intergenic 30.0%
AATTGTTATCTCTGTTTGGT+TGG + Chr6:6014251-6014270 MsG0680030607.01.T01:CDS 30.0%
AGACTAAAGTTAGTTCATCT+GGG - Chr6:6013600-6013619 None:intergenic 30.0%
AGTAGTAATGCTAAGGTAAT+TGG + Chr6:6012715-6012734 MsG0680030607.01.T01:CDS 30.0%
ATTGTTATCTCTGTTTGGTT+GGG + Chr6:6014252-6014271 MsG0680030607.01.T01:CDS 30.0%
CTTGTTAGTATGTGAAAAGT+GGG + Chr6:6012227-6012246 MsG0680030607.01.T01:intron 30.0%
GAGTAAAAGTAGTAATGCTA+AGG + Chr6:6012708-6012727 MsG0680030607.01.T01:CDS 30.0%
GTATATTTGAACTCAAAACG+TGG - Chr6:6014023-6014042 None:intergenic 30.0%
GTCAAATAACAGCTATATAG+CGG - Chr6:6012460-6012479 None:intergenic 30.0%
TACAAGTGTAGATATGATTG+TGG - Chr6:6013641-6013660 None:intergenic 30.0%
TATTCAAGTGCTTGGAAAAT+AGG + Chr6:6013679-6013698 MsG0680030607.01.T01:CDS 30.0%
TGCAAATTGTTATCTCTGTT+TGG + Chr6:6014247-6014266 MsG0680030607.01.T01:CDS 30.0%
TGGTCTTTATGCTGTATTAT+GGG + Chr6:6014706-6014725 MsG0680030607.01.T01:CDS 30.0%
TGGTGTATGATAAATCACTA+TGG + Chr6:6011438-6011457 MsG0680030607.01.T01:intron 30.0%
TGTTAACTATGTTCAGCATA+TGG + Chr6:6013839-6013858 MsG0680030607.01.T01:intron 30.0%
TTTATACTTCACACCAAACT+TGG + Chr6:6012620-6012639 MsG0680030607.01.T01:intron 30.0%
! AAGCACACTTTTGCATATAA+TGG - Chr6:6011335-6011354 None:intergenic 30.0%
! ACTTGTTAGTATGTGAAAAG+TGG + Chr6:6012226-6012245 MsG0680030607.01.T01:intron 30.0%
! ATAATGGAGAAACTGATTGA+AGG - Chr6:6011319-6011338 None:intergenic 30.0%
! ATGCTATGAATGTATTGACA+TGG + Chr6:6010893-6010912 MsG0680030607.01.T01:CDS 30.0%
! ATTTTCCAAGCACTTGAATA+TGG - Chr6:6013679-6013698 None:intergenic 30.0%
! CAGAAAAAAGTACAGTTTCA+GGG - Chr6:6011687-6011706 None:intergenic 30.0%
! GGCTTTCTTAATTTTCGTAT+TGG + Chr6:6013172-6013191 MsG0680030607.01.T01:intron 30.0%
! TCAGAAAAAAGTACAGTTTC+AGG - Chr6:6011688-6011707 None:intergenic 30.0%
! TCTATGGACTAACATCATTA+TGG - Chr6:6012550-6012569 None:intergenic 30.0%
! TTGGTCTTTATGCTGTATTA+TGG + Chr6:6014705-6014724 MsG0680030607.01.T01:CDS 30.0%
!! CTAAGATATCTCTAGGATTT+AGG + Chr6:6011550-6011569 MsG0680030607.01.T01:intron 30.0%
!! TATTTTTGCTAAAATCTCGG+TGG - Chr6:6011152-6011171 None:intergenic 30.0%
!! TTTGTGTTGACTTTCTACAA+AGG + Chr6:6012763-6012782 MsG0680030607.01.T01:CDS 30.0%
!!! ACTATTTTCTGGTTTCACTA+TGG + Chr6:6012902-6012921 MsG0680030607.01.T01:CDS 30.0%
!!! TTCATGTTTTGGGATTGTAT+GGG + Chr6:6012019-6012038 MsG0680030607.01.T01:intron 30.0%
!!! TTTCATGTTTTGGGATTGTA+TGG + Chr6:6012018-6012037 MsG0680030607.01.T01:intron 30.0%
AAGAAGATGGTCTTTGTACA+TGG + Chr6:6010845-6010864 MsG0680030607.01.T01:CDS 35.0%
ACAGACTTGAGAAAGTCAAT+TGG - Chr6:6012841-6012860 None:intergenic 35.0%
ACAGAGATAACAATTTGCAG+TGG - Chr6:6014246-6014265 None:intergenic 35.0%
ACCAAACTCTCCAAAATTTC+AGG + Chr6:6011714-6011733 MsG0680030607.01.T01:intron 35.0%
AGATATGATTGTGGCAGTAA+TGG - Chr6:6013632-6013651 None:intergenic 35.0%
AGATGTTCATCTCAGATTCT+GGG + Chr6:6012052-6012071 MsG0680030607.01.T01:intron 35.0%
ATGCAAACATACACAGATAC+TGG - Chr6:6013326-6013345 None:intergenic 35.0%
CCAATTGTGTGTCAAATATC+CGG - Chr6:6011526-6011545 None:intergenic 35.0%
GAGTAAATGTGTGTTTCGAT+TGG - Chr6:6013457-6013476 None:intergenic 35.0%
GATGTTAGTCCATAGATCAA+GGG + Chr6:6012554-6012573 MsG0680030607.01.T01:intron 35.0%
GGAGCCATAATAATCTCAAT+TGG + Chr6:6014686-6014705 MsG0680030607.01.T01:CDS 35.0%
GGTCTTTATGCTGTATTATG+GGG + Chr6:6014707-6014726 MsG0680030607.01.T01:CDS 35.0%
GTCTCTTACAGAAGAAACAA+TGG - Chr6:6013725-6013744 None:intergenic 35.0%
GTGGTCGATGTTCAAAATTA+TGG + Chr6:6014054-6014073 MsG0680030607.01.T01:intron 35.0%
GTTCAAATTCTGCTATGCAA+CGG + Chr6:6012344-6012363 MsG0680030607.01.T01:intron 35.0%
GTTGGAATCACCTATTTAGA+AGG - Chr6:6011636-6011655 None:intergenic 35.0%
TCAACCTCGTGTGAAAAATT+TGG - Chr6:6011609-6011628 None:intergenic 35.0%
TCATAGCATATAATCACAGC+AGG - Chr6:6010882-6010901 None:intergenic 35.0%
TCGTGGTTAATTGTGTTTAG+TGG - Chr6:6013903-6013922 None:intergenic 35.0%
TCTGTGTATGTTTGCATACA+CGG + Chr6:6013329-6013348 MsG0680030607.01.T01:intron 35.0%
TGAAAATATCCGAACTGTGA+TGG + Chr6:6014453-6014472 MsG0680030607.01.T01:intron 35.0%
TGACAAAATCATGTGTACCT+TGG - Chr6:6013425-6013444 None:intergenic 35.0%
TGATAACACTTTCGTTTCCA+GGG + Chr6:6014138-6014157 MsG0680030607.01.T01:intron 35.0%
TGATGTTAGTCCATAGATCA+AGG + Chr6:6012553-6012572 MsG0680030607.01.T01:intron 35.0%
TTAACTGAACCGAAATGCTT+CGG + Chr6:6014489-6014508 MsG0680030607.01.T01:intron 35.0%
TTACTTAGTAGGAAAAGGCT+TGG + Chr6:6011486-6011505 MsG0680030607.01.T01:intron 35.0%
TTCAATGTAGTCACAAGTGT+CGG - Chr6:6011805-6011824 None:intergenic 35.0%
! AAGCCTTTTCCTACTAAGTA+AGG - Chr6:6011487-6011506 None:intergenic 35.0%
! AATTGACTTTCTCAAGTCTG+TGG + Chr6:6012840-6012859 MsG0680030607.01.T01:CDS 35.0%
! ACATCCAAATTTTTCACACG+AGG + Chr6:6011602-6011621 MsG0680030607.01.T01:intron 35.0%
! ATATGCAAAAGTGTGCTTCT+TGG + Chr6:6011337-6011356 MsG0680030607.01.T01:CDS 35.0%
! ATGAACTGTCAGTCACATTT+TGG + Chr6:6014520-6014539 MsG0680030607.01.T01:intron 35.0%
! CAGTTCGGATATTTTCAGTT+TGG - Chr6:6014450-6014469 None:intergenic 35.0%
! CTTTTCCTACTAAGTAAGGT+CGG - Chr6:6011483-6011502 None:intergenic 35.0%
! GCTGACAATTGACTATTTTC+TGG + Chr6:6012891-6012910 MsG0680030607.01.T01:CDS 35.0%
! GGAAGCATAATATCAATAGC+AGG + Chr6:6012736-6012755 MsG0680030607.01.T01:CDS 35.0%
! GTTGATGAAGTTCAAAATCG+TGG - Chr6:6013920-6013939 None:intergenic 35.0%
! TTGATAACACTTTCGTTTCC+AGG + Chr6:6014137-6014156 MsG0680030607.01.T01:intron 35.0%
! TTTCGTTTCCAGGGAATTTT+CGG + Chr6:6014147-6014166 MsG0680030607.01.T01:intron 35.0%
!! AAGTCAATTGGTTGATGAAG+TGG - Chr6:6012829-6012848 None:intergenic 35.0%
!! GGAATTTTCGGGAAGTTAAT+CGG + Chr6:6014159-6014178 MsG0680030607.01.T01:CDS 35.0%
!! TCCTGAAATTTTGGAGAGTT+TGG - Chr6:6011718-6011737 None:intergenic 35.0%
!!! GGTTAACTGTTTTGAGTTGA+TGG + Chr6:6014075-6014094 MsG0680030607.01.T01:intron 35.0%
AAGAACCTGAGTTCGATTGT+TGG - Chr6:6011654-6011673 None:intergenic 40.0%
ACTCTTCATGTTGGAAGGTA+TGG + Chr6:6014294-6014313 MsG0680030607.01.T01:intron 40.0%
AGTGGACAATAGACCAAGTT+TGG - Chr6:6012636-6012655 None:intergenic 40.0%
ATCTGAACACGTGAAAGTAG+TGG - Chr6:6013942-6013961 None:intergenic 40.0%
ATGGAGAAACTGATTGAAGG+AGG - Chr6:6011316-6011335 None:intergenic 40.0%
ATTGTGTGTCAAATATCCGG+TGG - Chr6:6011523-6011542 None:intergenic 40.0%
ATTGTTCATCCCTTGAAGTG+TGG - Chr6:6010943-6010962 None:intergenic 40.0%
CAAAGCAACAGAAGAGATAG+AGG + Chr6:6014730-6014749 MsG0680030607.01.T01:CDS 40.0%
CAGATGTTCATCTCAGATTC+TGG + Chr6:6012051-6012070 MsG0680030607.01.T01:intron 40.0%
CAGTTCCATATTCAAGTGCT+TGG + Chr6:6013671-6013690 MsG0680030607.01.T01:CDS 40.0%
CCGGATATTTGACACACAAT+TGG + Chr6:6011523-6011542 MsG0680030607.01.T01:intron 40.0%
CGACCTTACTTAGTAGGAAA+AGG + Chr6:6011481-6011500 MsG0680030607.01.T01:intron 40.0%
CTTCAGATATAAGACGTGTC+TGG - Chr6:6013115-6013134 None:intergenic 40.0%
CTTTAGCAAAAGCTGCACTT+TGG - Chr6:6013399-6013418 None:intergenic 40.0%
GAAGAGATAGAGGAAGATGT+TGG + Chr6:6014740-6014759 MsG0680030607.01.T01:CDS 40.0%
GATGTTCATCTCAGATTCTG+GGG + Chr6:6012053-6012072 MsG0680030607.01.T01:intron 40.0%
GCTAACATGAAAGTGAAAGC+AGG - Chr6:6012136-6012155 None:intergenic 40.0%
GGTTGAACTGCCTTCTAAAT+AGG + Chr6:6011623-6011642 MsG0680030607.01.T01:intron 40.0%
GTGATACTCTTCATGTTGGA+AGG + Chr6:6014289-6014308 MsG0680030607.01.T01:CDS 40.0%
TAGCATATAATCACAGCAGG+TGG - Chr6:6010879-6010898 None:intergenic 40.0%
TGATTCCAACAATCGAACTC+AGG + Chr6:6011646-6011665 MsG0680030607.01.T01:intron 40.0%
TGGCATGCTAAGATATCTCT+AGG + Chr6:6011543-6011562 MsG0680030607.01.T01:intron 40.0%
TGGTTGGGAGTTATATTCCT+TGG + Chr6:6014267-6014286 MsG0680030607.01.T01:CDS 40.0%
TGTATGTTTGCATACACGGT+TGG + Chr6:6013333-6013352 MsG0680030607.01.T01:intron 40.0%
TTAAAGTGTGTGAGTGTGAC+TGG - Chr6:6012275-6012294 None:intergenic 40.0%
TTAACTTCCCGAAAATTCCC+TGG - Chr6:6014158-6014177 None:intergenic 40.0%
TTCTGGTGAAAAGAGTGACA+GGG - Chr6:6011013-6011032 None:intergenic 40.0%
! AGCTTTTGCTAAAGTCACCA+AGG + Chr6:6013405-6013424 MsG0680030607.01.T01:intron 40.0%
! ATATTAGAGCACGATTCGGA+TGG - Chr6:6013984-6014003 None:intergenic 40.0%
! CGGCAATATAGTTTTTGCCT+GGG + Chr6:6014179-6014198 MsG0680030607.01.T01:CDS 40.0%
! CTTGGTGATACTCTTCATGT+TGG + Chr6:6014285-6014304 MsG0680030607.01.T01:CDS 40.0%
! TCGGCAATATAGTTTTTGCC+TGG + Chr6:6014178-6014197 MsG0680030607.01.T01:CDS 40.0%
! TGAACTGAACCGAAGCATTT+CGG - Chr6:6014501-6014520 None:intergenic 40.0%
! TTCGTTTCCAGGGAATTTTC+GGG + Chr6:6014148-6014167 MsG0680030607.01.T01:intron 40.0%
!! AATTGGTTGATGAAGTGGTG+AGG - Chr6:6012824-6012843 None:intergenic 40.0%
!! AGAGGTGCATTTTCAGTAGA+TGG - Chr6:6014779-6014798 None:intergenic 40.0%
!! CAACATGAAGAGTATCACCA+AGG - Chr6:6014287-6014306 None:intergenic 40.0%
!! GTTCGGATTGATAGTGAGTT+TGG + Chr6:6011112-6011131 MsG0680030607.01.T01:intron 40.0%
!! TCATGTTAGCTGTCACTTTC+AGG + Chr6:6012146-6012165 MsG0680030607.01.T01:CDS 40.0%
ACTAAGTAAGGTCGGCTACA+TGG - Chr6:6011475-6011494 None:intergenic 45.0%
AGGCCTTAACCTATGAAGCA+CGG - Chr6:6011904-6011923 None:intergenic 45.0%
AGTACAGTTTCAGGGAACTC+AGG - Chr6:6011679-6011698 None:intergenic 45.0%
AGTGTGCTTCTTGGAGCAAT+AGG + Chr6:6011346-6011365 MsG0680030607.01.T01:CDS 45.0%
CAAGTCTGTGGATTCAAGCT+GGG + Chr6:6012852-6012871 MsG0680030607.01.T01:CDS 45.0%
CCTGGGCAATACACTTAAAG+GGG + Chr6:6014196-6014215 MsG0680030607.01.T01:CDS 45.0%
CTGGGCAATACACTTAAAGG+GGG + Chr6:6014197-6014216 MsG0680030607.01.T01:CDS 45.0%
CTTCTGGTGAAAAGAGTGAC+AGG - Chr6:6011014-6011033 None:intergenic 45.0%
GAGATGAACATCTGCAGAAC+AGG - Chr6:6012045-6012064 None:intergenic 45.0%
GCAATTGCTGAAGCAAGTGT+TGG - Chr6:6012103-6012122 None:intergenic 45.0%
GCCTGGGCAATACACTTAAA+GGG + Chr6:6014195-6014214 MsG0680030607.01.T01:CDS 45.0%
GTGAGCTATCCATCACAGTT+CGG - Chr6:6014465-6014484 None:intergenic 45.0%
GTGTGCTTCTTGGAGCAATA+GGG + Chr6:6011347-6011366 MsG0680030607.01.T01:CDS 45.0%
TCAAAGCAGCCACACTTCAA+GGG + Chr6:6010931-6010950 MsG0680030607.01.T01:CDS 45.0%
TCAAGTCTGTGGATTCAAGC+TGG + Chr6:6012851-6012870 MsG0680030607.01.T01:CDS 45.0%
TGCCTGGGCAATACACTTAA+AGG + Chr6:6014194-6014213 MsG0680030607.01.T01:CDS 45.0%
TGCTTCAGCAATTGCGAATC+TGG + Chr6:6012108-6012127 MsG0680030607.01.T01:CDS 45.0%
TGTAGCCGACCTTACTTAGT+AGG + Chr6:6011475-6011494 MsG0680030607.01.T01:intron 45.0%
TGTCAGCAGAATACCAGCAA+TGG - Chr6:6012878-6012897 None:intergenic 45.0%
TGTCCGTGCTTCATAGGTTA+AGG + Chr6:6011898-6011917 MsG0680030607.01.T01:intron 45.0%
TTACGGATCGCAGAAACTAG+AGG + Chr6:6012318-6012337 MsG0680030607.01.T01:intron 45.0%
TTCAAAGCAGCCACACTTCA+AGG + Chr6:6010930-6010949 MsG0680030607.01.T01:CDS 45.0%
! ACGCCTTCAATCAGAAGTGT+CGG - Chr6:6011766-6011785 None:intergenic 45.0%
! AGCACGATTCGGATGGTTAA+TGG - Chr6:6013977-6013996 None:intergenic 45.0%
! CTGTCACTCTTTTCACCAGA+AGG + Chr6:6011012-6011031 MsG0680030607.01.T01:CDS 45.0%
! GTACCGACACTTCTGATTGA+AGG + Chr6:6011760-6011779 MsG0680030607.01.T01:intron 45.0%
! GTAGGAAAAGGCTTGGTTGT+TGG + Chr6:6011493-6011512 MsG0680030607.01.T01:intron 45.0%
!! AGAGGAAGATGTTGGTAGCT+TGG + Chr6:6014748-6014767 MsG0680030607.01.T01:CDS 45.0%
!! CAGAAGTGTCGGTACAACAT+AGG - Chr6:6011755-6011774 None:intergenic 45.0%
!! CTGTCAGTCACATTTTGGTG+CGG + Chr6:6014525-6014544 MsG0680030607.01.T01:intron 45.0%
!! CTTGGTTGTTGGTAATCCAC+CGG + Chr6:6011504-6011523 MsG0680030607.01.T01:intron 45.0%
AAGTGTGTGAGTGTGACTGG+TGG - Chr6:6012272-6012291 None:intergenic 50.0%
AATTTGCAGTGGCACGAACG+AGG - Chr6:6014235-6014254 None:intergenic 50.0%
ATGAAGCACGGACACAGACA+CGG - Chr6:6011892-6011911 None:intergenic 50.0%
CCCCTTTAAGTGTATTGCCC+AGG - Chr6:6014199-6014218 None:intergenic 50.0%
TGTCTGTGTCCGTGCTTCAT+AGG + Chr6:6011892-6011911 MsG0680030607.01.T01:intron 50.0%
!! GATGTCTCACTGCCGATTCA+AGG - Chr6:6011587-6011606 None:intergenic 50.0%
!! GTAGTCACAAGTGTCGGTGT+CGG - Chr6:6011799-6011818 None:intergenic 50.0%
!! TATCGGTGTCAACGTGTCTG+TGG + Chr6:6011848-6011867 MsG0680030607.01.T01:intron 50.0%
GATTCAAGCTGGGCCATTGC+TGG + Chr6:6012862-6012881 MsG0680030607.01.T01:CDS 55.0%
GTCTGTGGCAGTGTCATGTC+TGG + Chr6:6011863-6011882 MsG0680030607.01.T01:intron 55.0%
!! CAAGTGTCGGTGTCGGACAC+TGG - Chr6:6011792-6011811 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 6010840 6014811 6010840 ID=MsG0680030607.01;Name=MsG0680030607.01
Chr6 mRNA 6010840 6014811 6010840 ID=MsG0680030607.01.T01;Parent=MsG0680030607.01;Name=MsG0680030607.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0.5|0.28|1|1|1|7|0|356
Chr6 exon 6010840 6011033 6010840 ID=MsG0680030607.01.T01:exon:5884;Parent=MsG0680030607.01.T01
Chr6 exon 6011300 6011368 6011300 ID=MsG0680030607.01.T01:exon:5885;Parent=MsG0680030607.01.T01
Chr6 exon 6012054 6012167 6012054 ID=MsG0680030607.01.T01:exon:5886;Parent=MsG0680030607.01.T01
Chr6 exon 6012687 6012936 6012687 ID=MsG0680030607.01.T01:exon:5887;Parent=MsG0680030607.01.T01
Chr6 exon 6013577 6013735 6013577 ID=MsG0680030607.01.T01:exon:5888;Parent=MsG0680030607.01.T01
Chr6 exon 6014159 6014310 6014159 ID=MsG0680030607.01.T01:exon:5889;Parent=MsG0680030607.01.T01
Chr6 exon 6014679 6014811 6014679 ID=MsG0680030607.01.T01:exon:5890;Parent=MsG0680030607.01.T01
Chr6 CDS 6010840 6011033 6010840 ID=MsG0680030607.01.T01:cds;Parent=MsG0680030607.01.T01
Chr6 CDS 6011300 6011368 6011300 ID=MsG0680030607.01.T01:cds;Parent=MsG0680030607.01.T01
Chr6 CDS 6012054 6012167 6012054 ID=MsG0680030607.01.T01:cds;Parent=MsG0680030607.01.T01
Chr6 CDS 6012687 6012936 6012687 ID=MsG0680030607.01.T01:cds;Parent=MsG0680030607.01.T01
Chr6 CDS 6013577 6013735 6013577 ID=MsG0680030607.01.T01:cds;Parent=MsG0680030607.01.T01
Chr6 CDS 6014159 6014310 6014159 ID=MsG0680030607.01.T01:cds;Parent=MsG0680030607.01.T01
Chr6 CDS 6014679 6014811 6014679 ID=MsG0680030607.01.T01:cds;Parent=MsG0680030607.01.T01
Gene Sequence

>MsG0680030607.01.T01

ATGACAAGAAGATGGTCTTTGTACATGGATTTTCTGCCACCTGCTGTGATTATATGCTATGAATGTATTGACATGGCTTTGCTCACTTTGTTCAAAGCAGCCACACTTCAAGGGATGAACAATCATGTCTTTATTGCTTATGCTTATGCTGTTGATACTTCTGTTCTTCTCCCTGTCACTCTTTTCACCAGAAGATCAAGAGCTGTTCCTCCTTCAATCAGTTTCTCCATTATATGCAAAAGTGTGCTTCTTGGAGCAATAGGATGTTCATCTCAGATTCTGGGGTATATTAGTATTAATTCAAGTTCTCCAACACTTGCTTCAGCAATTGCGAATCTGGTACCTGCTTTCACTTTCATGTTAGCTGTCACTTTCAGAATGGAAAAGTTAGCTGCAAAGAGTAAAAGTAGTAATGCTAAGGTAATTGGAAGCATAATATCAATAGCAGGTGCTTTTGTGTTGACTTTCTACAAAGGACAATCCATCATGAATTCATCTTATACTCATCATTCCTCACCACTTCATCAACCAATTGACTTTCTCAAGTCTGTGGATTCAAGCTGGGCCATTGCTGGTATTCTGCTGACAATTGACTATTTTCTGGTTTCACTATGGTATATTTTACAGGCACATATCTTGAAAGAGTTCCCAGATGAACTAACTTTAGTCTTGATATATTCCATTACTGCCACAATCATATCTACACTTGTAGCTTTGTTATCAGTTCCATATTCAAGTGCTTGGAAAATAGGACTAAATCTCTCACTCATCTCCATTGTTTCTTCTGGAATTTTCGGGAAGTTAATCGGCAATATAGTTTTTGCCTGGGCAATACACTTAAAGGGGGCTGTCTATGTAACCTCGTTCGTGCCACTGCAAATTGTTATCTCTGTTTGGTTGGGAGTTATATTCCTTGGTGATACTCTTCATGTTGGAAGTATAATTGGAGCCATAATAATCTCAATTGGTCTTTATGCTGTATTATGGGGCAAAGCAACAGAAGAGATAGAGGAAGATGTTGGTAGCTTGGACTCACCATCTACTGAAAATGCACCTCTTCTGCAAAGCTAG
Protein sequence

>MsG0680030607.01.T01

MTRRWSLYMDFLPPAVIICYECIDMALLTLFKAATLQGMNNHVFIAYAYAVDTSVLLPVTLFTRRSRAVPPSISFSIICKSVLLGAIGCSSQILGYISINSSSPTLASAIANLVPAFTFMLAVTFRMEKLAAKSKSSNAKVIGSIISIAGAFVLTFYKGQSIMNSSYTHHSSPLHQPIDFLKSVDSSWAIAGILLTIDYFLVSLWYILQAHILKEFPDELTLVLIYSITATIISTLVALLSVPYSSAWKIGLNLSLISIVSSGIFGKLIGNIVFAWAIHLKGAVYVTSFVPLQIVISVWLGVIFLGDTLHVGSIIGAIIISIGLYAVLWGKATEEIEEDVGSLDSPSTENAPLLQS*