AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031057.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031057.01.T01 MTR_6g016275 95.435 460 21 0 1 460 1 460 0.0 850
MsG0680031057.01.T01 MTR_6g016295 83.519 449 73 1 11 458 8 456 0.0 743
MsG0680031057.01.T01 MTR_6g016245 81.858 452 81 1 9 459 4 455 0.0 734
MsG0680031057.01.T01 MTR_6g016270 79.870 462 90 2 1 459 1 462 0.0 699
MsG0680031057.01.T01 MTR_7g017630 71.552 464 126 3 1 459 1 463 0.0 673
MsG0680031057.01.T01 MTR_6g024240 76.667 270 8 2 191 460 38 252 2.32e-130 377
MsG0680031057.01.T01 MTR_5g083760 41.950 441 249 4 18 452 2 441 4.51e-125 371
MsG0680031057.01.T01 MTR_5g083770 43.056 432 236 4 25 454 5 428 2.64e-122 363
MsG0680031057.01.T01 MTR_3g072110 41.553 438 246 4 24 459 9 438 1.08e-116 349
MsG0680031057.01.T01 MTR_2g104180 44.550 422 223 6 43 460 73 487 4.56e-113 342
MsG0680031057.01.T01 MTR_6g016245 82.828 198 34 0 262 459 190 387 6.28e-111 333
MsG0680031057.01.T01 MTR_6g016245 77.174 184 41 1 11 193 6 189 4.54e-101 308
MsG0680031057.01.T01 MTR_1396s0010 57.143 266 92 2 195 460 1 244 3.73e-101 303
MsG0680031057.01.T01 MTR_1396s0010 60.697 201 78 1 175 375 1 200 1.33e-81 251
MsG0680031057.01.T01 MTR_8g065630 48.276 203 91 3 11 199 4 206 1.11e-51 174
MsG0680031057.01.T01 MTR_8g065650 51.562 192 79 3 18 195 11 202 1.06e-48 176
MsG0680031057.01.T01 MTR_0658s0030 57.724 123 51 1 338 460 1 122 1.33e-42 147
MsG0680031057.01.T01 MTR_3g072105 45.333 75 41 0 46 120 23 97 6.29e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031057.01.T01 AT3G30390 63.677 446 158 3 16 458 12 456 0.0 573
MsG0680031057.01.T01 AT3G30390 63.677 446 158 3 16 458 12 456 0.0 573
MsG0680031057.01.T01 AT3G30390 63.677 446 158 3 16 458 12 456 0.0 573
MsG0680031057.01.T01 AT5G38820 62.812 441 160 3 21 458 16 455 0.0 565
MsG0680031057.01.T01 AT5G38820 62.812 441 160 3 21 458 11 450 0.0 565
MsG0680031057.01.T01 AT5G38820 62.812 441 160 3 21 458 11 450 0.0 565
MsG0680031057.01.T01 AT3G56200 42.396 434 243 4 23 454 4 432 8.91e-115 344
MsG0680031057.01.T01 AT2G40420 44.316 431 235 4 24 452 5 432 5.48e-113 340
MsG0680031057.01.T01 AT1G80510 43.885 417 224 5 43 454 73 484 1.98e-100 309
MsG0680031057.01.T01 AT2G41190 23.077 468 309 12 14 459 98 536 1.46e-13 73.2
MsG0680031057.01.T01 AT5G02180 23.661 448 304 14 17 457 131 547 2.03e-11 66.6
MsG0680031057.01.T01 AT5G02180 23.661 448 304 14 17 457 131 547 2.03e-11 66.6

Find 116 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTATTGGTGCTGGAATTA+TGG 0.156418 6:+13412797 MsG0680031057.01.T01:CDS
TTTCCAAACTTTCAGATTAA+AGG 0.157961 6:+13415074 MsG0680031057.01.T01:three_prime_UTR
AATTTATCAACCACAATTAT+TGG 0.168967 6:+13412783 MsG0680031057.01.T01:CDS
TTCTTCCTATGGAAATCTTA+TGG 0.183008 6:+13412941 MsG0680031057.01.T01:CDS
TTCTTTGGGTTCCTACTATT+TGG 0.194546 6:+13414434 MsG0680031057.01.T01:CDS
AATGAATGACTTGTTGTTAA+TGG 0.196297 6:+13415504 MsG0680031057.01.T01:three_prime_UTR
ACATCACTTTCTTCTGTCTT+AGG 0.223139 6:-13412714 None:intergenic
ATTGTAGGTGATGTGATTTC+TGG 0.229977 6:+13413141 MsG0680031057.01.T01:intron
GTTCCTTTAATCTGAAAGTT+TGG 0.260029 6:-13415077 None:intergenic
GTTAAGTTTGATGAACTTAA+TGG 0.264825 6:+13412735 MsG0680031057.01.T01:CDS
TACTTACTGACAAGCTTCTT+TGG 0.266132 6:+13414419 MsG0680031057.01.T01:CDS
CAAATTTCATACCTAACATT+TGG 0.283528 6:+13414708 MsG0680031057.01.T01:CDS
TCCAAGATCAGTATCAAAAT+TGG 0.300073 6:-13414483 None:intergenic
TACCAAATTGTATATTTATA+CGG 0.305452 6:+13415278 MsG0680031057.01.T01:three_prime_UTR
ATTTGCTGTGGTTGCACCTT+TGG 0.320327 6:+13413260 MsG0680031057.01.T01:CDS
ATTATTGGTGCTGGAATTAT+GGG 0.320496 6:+13412798 MsG0680031057.01.T01:CDS
TCTTCCTATGGAAATCTTAT+GGG 0.321585 6:+13412942 MsG0680031057.01.T01:CDS
CACCGTATAAATATACAATT+TGG 0.322250 6:-13415280 None:intergenic
CTCAATGCATAGAAAATTAC+AGG 0.336695 6:-13414575 None:intergenic
AATCTTATGGGAGATGCCTT+TGG 0.343530 6:+13412954 MsG0680031057.01.T01:CDS
ACTTACTGACAAGCTTCTTT+GGG 0.347899 6:+13414420 MsG0680031057.01.T01:CDS
AGTCAATTGATTTCATAATC+AGG 0.357461 6:+13412898 MsG0680031057.01.T01:CDS
TTTGGTGTCCATTGGTGGAC+TGG 0.358328 6:+13413210 MsG0680031057.01.T01:CDS
TACCTCACTTGCAGTAATAA+AGG 0.363731 6:-13415410 None:intergenic
TTCCAGCTGCAATCGCTCTA+AGG 0.372710 6:+13414783 MsG0680031057.01.T01:CDS
AAATTTCATACCTAACATTT+GGG 0.375847 6:+13414709 MsG0680031057.01.T01:CDS
CACCTGTTGCTCCAGTGAAT+TGG 0.376723 6:-13414739 None:intergenic
TTCCAATTCACTGGAGCAAC+AGG 0.378767 6:+13414737 MsG0680031057.01.T01:CDS
ATCTTATGGGAGATGCCTTT+GGG 0.385233 6:+13412955 MsG0680031057.01.T01:CDS
TTCCTCATCAAGAAGGCCTT+TGG 0.387053 6:+13414622 MsG0680031057.01.T01:CDS
GTAATAAAGGATAACAAGTC+TGG 0.387135 6:-13415397 None:intergenic
TTCACGTCTGCATTATCAAT+TGG 0.388144 6:+13413671 MsG0680031057.01.T01:CDS
TGTATACATTATTATTTGTT+GGG 0.388933 6:+13415445 MsG0680031057.01.T01:three_prime_UTR
TGGGATGCCTAGACTCTTCC+CGG 0.389127 6:+13413760 MsG0680031057.01.T01:CDS
TGGAAAATAACCCAAATGTT+AGG 0.406406 6:-13414719 None:intergenic
ACCTTGTTTATAACAGAGTT+GGG 0.415481 6:+13415158 MsG0680031057.01.T01:three_prime_UTR
TCAACCACAATTATTGGTGC+TGG 0.417512 6:+13412789 MsG0680031057.01.T01:CDS
AACAAGGTTGAACATGTTGC+AGG 0.420350 6:-13415143 None:intergenic
TTGGTGTCCATTGGTGGACT+GGG 0.426711 6:+13413211 MsG0680031057.01.T01:CDS
CTTGTTGTCATTATCTTCCT+CGG 0.427841 6:+13414683 MsG0680031057.01.T01:CDS
TCAATTATCAAGATTATTAG+TGG 0.428815 6:+13413731 MsG0680031057.01.T01:CDS
AGATTATTAGTGGCGGCATT+GGG 0.432282 6:+13413741 MsG0680031057.01.T01:CDS
ACTGCAAGTGAGGTATTTGC+TGG 0.433557 6:+13415418 MsG0680031057.01.T01:three_prime_UTR
TTGTATACATTATTATTTGT+TGG 0.434005 6:+13415444 MsG0680031057.01.T01:three_prime_UTR
AAGATTATTAGTGGCGGCAT+TGG 0.440911 6:+13413740 MsG0680031057.01.T01:CDS
AGGATAACAAGTCTGGGAAA+TGG 0.441876 6:-13415390 None:intergenic
ATTGACAACAAATATGTTGT+CGG 0.446179 6:-13415304 None:intergenic
ACTGATCTTGGAATTCCCTT+CGG 0.448477 6:+13414494 MsG0680031057.01.T01:CDS
CACCTTAGAGCGATTGCAGC+TGG 0.449891 6:-13414785 None:intergenic
GCAGGGAAACTTTCTTCCTA+TGG 0.452733 6:+13412930 MsG0680031057.01.T01:CDS
TCTCTGTCAATAAAGCTGTT+AGG 0.455879 6:-13412875 None:intergenic
AACCTTGTTTATAACAGAGT+TGG 0.457910 6:+13415157 MsG0680031057.01.T01:three_prime_UTR
TTGTTGGGTTTCATCAGAAA+AGG 0.458429 6:+13415460 MsG0680031057.01.T01:three_prime_UTR
AACTAAAACAGATACGATTC+TGG 0.460597 6:+13414922 MsG0680031057.01.T01:CDS
GGTGTCCTTGAAGGATGGTT+TGG 0.463689 6:+13413192 MsG0680031057.01.T01:CDS
GGAGATGCCTTTGGGAAATA+CGG 0.464058 6:+13412963 MsG0680031057.01.T01:CDS
TTGGTCAGCTTTAAGCGGAT+TGG 0.477571 6:+13413279 MsG0680031057.01.T01:CDS
AAGGATGGTTTGGTGTCCAT+TGG 0.478302 6:+13413202 MsG0680031057.01.T01:CDS
GAACTCCTTCACCAAATAGT+AGG 0.481003 6:-13414445 None:intergenic
CACCATGCTGGTGTCCTTGA+AGG 0.483204 6:+13413183 MsG0680031057.01.T01:CDS
GATGGTTTGGTGTCCATTGG+TGG 0.485337 6:+13413205 MsG0680031057.01.T01:CDS
TCAAAGCATAGAGAATGAAC+TGG 0.495561 6:+13414337 MsG0680031057.01.T01:CDS
GCATTGAGGTTCAACGTAGA+TGG 0.498672 6:+13414590 MsG0680031057.01.T01:CDS
GGGTTCCTACTATTTGGTGA+AGG 0.499413 6:+13414440 MsG0680031057.01.T01:CDS
AGATCCCTACGGCAATGATA+AGG 0.499574 6:-13413709 None:intergenic
GGCTGTCCTTATGATAGTGC+TGG 0.499771 6:+13414943 MsG0680031057.01.T01:CDS
ATCATGTACATGATCATTGT+TGG 0.510416 6:+13413032 MsG0680031057.01.T01:CDS
GGACACCAAACCATCCTTCA+AGG 0.514169 6:-13413197 None:intergenic
ATCATTGAGCGCAGAACCGA+AGG 0.528664 6:-13414510 None:intergenic
TACTTTCGCAACATTTGCTG+TGG 0.530792 6:+13413248 MsG0680031057.01.T01:CDS
GAAATACGGAAAAGCATCGT+TGG 0.536527 6:+13412977 MsG0680031057.01.T01:CDS
CAGAAAAGGAAATTGAGTAA+TGG 0.537864 6:+13415474 MsG0680031057.01.T01:three_prime_UTR
TGACCTTTAATGTATATCAA+AGG 0.538580 6:+13412481 None:intergenic
GATCTTTAATGTTGTAAATG+TGG 0.541958 6:+13415347 MsG0680031057.01.T01:three_prime_UTR
AAACCGCCAGCACTATCATA+AGG 0.542140 6:-13414949 None:intergenic
CACCTTTGGTCAGCTTTAAG+CGG 0.542192 6:+13413274 MsG0680031057.01.T01:CDS
GAAGCTGCATCAGTAATGAC+CGG 0.543219 6:-13413779 None:intergenic
ATTTCTGGAACAACTTCAAG+TGG 0.544374 6:+13413156 MsG0680031057.01.T01:CDS
ACACTGACGAGCATAGAGTA+AGG 0.545977 6:-13414397 None:intergenic
ATCCTTTATTACTGCAAGTG+AGG 0.548740 6:+13415408 MsG0680031057.01.T01:three_prime_UTR
GTAATGACCGGGAAGAGTCT+AGG 0.559124 6:-13413767 None:intergenic
GAGGATTCCTCACGGATACA+TGG 0.566748 6:+13414359 MsG0680031057.01.T01:CDS
TTTCTCTCGCTCAGTCATGT+CGG 0.568281 6:-13415244 None:intergenic
TAATAAAGGATAACAAGTCT+GGG 0.569919 6:-13415396 None:intergenic
TCTTCTGTCTTAGGTAACAA+AGG 0.571719 6:-13412705 None:intergenic
AACCAAAGGCCTTCTTGATG+AGG 0.573378 6:-13414624 None:intergenic
CGAGGAAGATAATGACAACA+AGG 0.577653 6:-13414682 None:intergenic
ATGTACGCCCAGTCCACCAA+TGG 0.578995 6:-13413218 None:intergenic
AATTCCAGCACCAATAATTG+TGG 0.583355 6:-13412793 None:intergenic
ATGCTGGTGTCCTTGAAGGA+TGG 0.583854 6:+13413187 MsG0680031057.01.T01:CDS
TCAAGTGGAATTCACCATGC+TGG 0.586016 6:+13413171 MsG0680031057.01.T01:CDS
ACGTAAGCTGTCATTAGCAC+AGG 0.589468 6:-13413827 None:intergenic
TTGAAGAATATTTGTACACA+TGG 0.614750 6:-13415107 None:intergenic
CTGAAGTTATCAACAACCAA+AGG 0.615882 6:-13414638 None:intergenic
ATCTCCCATAAGATTTCCAT+AGG 0.615995 6:-13412946 None:intergenic
AAGCTGCATCAGTAATGACC+GGG 0.624108 6:-13413778 None:intergenic
CACTGACGAGCATAGAGTAA+GGG 0.624195 6:-13414396 None:intergenic
TATTCTTCAAAAGTGTGTGA+AGG 0.624277 6:+13415120 MsG0680031057.01.T01:three_prime_UTR
CTTTAATGTTGTAAATGTGG+AGG 0.630291 6:+13415350 MsG0680031057.01.T01:three_prime_UTR
ATTATCAAGATTATTAGTGG+CGG 0.630417 6:+13413734 MsG0680031057.01.T01:CDS
ACCCAACTCTGTTATAAACA+AGG 0.630971 6:-13415159 None:intergenic
ATCCTTCAAGGACACCAGCA+TGG 0.632142 6:-13413185 None:intergenic
TGAAAAGTGAAAATGACTAG+TGG 0.635089 6:+13412615 MsG0680031057.01.T01:exon
CTTGATAATTGAGATCCCTA+CGG 0.641158 6:-13413720 None:intergenic
ATCCGCTTAAAGCTGACCAA+AGG 0.647778 6:-13413276 None:intergenic
AAGCATAGAGAATGAACTGG+AGG 0.650959 6:+13414340 MsG0680031057.01.T01:CDS
ATGAACTGGAGGATTCCTCA+CGG 0.655141 6:+13414351 MsG0680031057.01.T01:CDS
TGTCCTTATGATAGTGCTGG+CGG 0.658854 6:+13414946 MsG0680031057.01.T01:CDS
GTACATGATCAGACTACCGA+TGG 0.672010 6:-13413018 None:intergenic
TCATTGAGCGCAGAACCGAA+GGG 0.672577 6:-13414509 None:intergenic
GAGGAAGATAATGACAACAA+GGG 0.679413 6:-13414681 None:intergenic
TAGGTATGAAATTTGCTCCG+AGG 0.690029 6:-13414700 None:intergenic
TCTGATGCCGTATATGAATG+TGG 0.699477 6:+13415199 MsG0680031057.01.T01:three_prime_UTR
GCTTACGTATGTCACTACAA+TGG 0.708250 6:+13413842 MsG0680031057.01.T01:CDS
AGGACTATGACAATAAGACC+AGG 0.710631 6:-13412855 None:intergenic
CACAACACCATGTATCCGTG+AGG 0.731360 6:-13414366 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTCAAAAAACAAAAA+AGG + Chr6:13412584-13412603 MsG0680031057.01.T01:intron 10.0%
!! GAAAAATATATTCAAAACTT+TGG - Chr6:13412512-13412531 None:intergenic 15.0%
!! TACCAAATTGTATATTTATA+CGG + Chr6:13415278-13415297 MsG0680031057.01.T01:three_prime_UTR 15.0%
!! TGTATACATTATTATTTGTT+GGG + Chr6:13415445-13415464 MsG0680031057.01.T01:three_prime_UTR 15.0%
!! TTGTATACATTATTATTTGT+TGG + Chr6:13415444-13415463 MsG0680031057.01.T01:three_prime_UTR 15.0%
!!! AATTGATTTTCAGATTATTT+TGG + Chr6:13414040-13414059 MsG0680031057.01.T01:intron 15.0%
!!! ATATTTTTCAAGCTAAAAAA+CGG + Chr6:13412523-13412542 MsG0680031057.01.T01:five_prime_UTR 15.0%
!! AAATTTCATACCTAACATTT+GGG + Chr6:13414709-13414728 MsG0680031057.01.T01:CDS 20.0%
!! AATTTATCAACCACAATTAT+TGG + Chr6:13412783-13412802 MsG0680031057.01.T01:CDS 20.0%
!! CGTTTGTAAACTAAAAAAAA+TGG + Chr6:13413426-13413445 MsG0680031057.01.T01:intron 20.0%
!! TAATCAAAACATTAAGAGAA+AGG - Chr6:13413885-13413904 None:intergenic 20.0%
!! TATCATTAGAGAAGAATTTA+AGG + Chr6:13413089-13413108 MsG0680031057.01.T01:intron 20.0%
!! TCAATTATCAAGATTATTAG+TGG + Chr6:13413731-13413750 MsG0680031057.01.T01:CDS 20.0%
!! TGCTTCATAGATTTATTATA+TGG + Chr6:13414284-13414303 MsG0680031057.01.T01:intron 20.0%
!!! TATTTTTCAAGCTAAAAAAC+GGG + Chr6:13412524-13412543 MsG0680031057.01.T01:five_prime_UTR 20.0%
!!! TTTGTTTTTGTTCATATTGT+AGG + Chr6:13413126-13413145 MsG0680031057.01.T01:intron 20.0%
!!! TTTTATACCACATTCATATA+CGG - Chr6:13415209-13415228 None:intergenic 20.0%
! AAAGTCTAGACTTAAGAATA+TGG - Chr6:13413063-13413082 None:intergenic 25.0%
! AACAAGATCAATAAACAACT+AGG + Chr6:13413451-13413470 MsG0680031057.01.T01:intron 25.0%
! AGACTTGTATAAATGTAAGT+TGG + Chr6:13413913-13413932 MsG0680031057.01.T01:intron 25.0%
! ATTATCAAGATTATTAGTGG+CGG + Chr6:13413734-13413753 MsG0680031057.01.T01:CDS 25.0%
! ATTGACAACAAATATGTTGT+CGG - Chr6:13415307-13415326 None:intergenic 25.0%
! CAAATTTCATACCTAACATT+TGG + Chr6:13414708-13414727 MsG0680031057.01.T01:CDS 25.0%
! CACCGTATAAATATACAATT+TGG - Chr6:13415283-13415302 None:intergenic 25.0%
! GATCTTTAATGTTGTAAATG+TGG + Chr6:13415347-13415366 MsG0680031057.01.T01:three_prime_UTR 25.0%
! GTTAAGTTTGATGAACTTAA+TGG + Chr6:13412735-13412754 MsG0680031057.01.T01:CDS 25.0%
! TAATAAAGGATAACAAGTCT+GGG - Chr6:13415399-13415418 None:intergenic 25.0%
! TCATAAAAAATTGACAGACA+TGG - Chr6:13414013-13414032 None:intergenic 25.0%
! TTAGTTTACAAACGATGAAA+TGG - Chr6:13413420-13413439 None:intergenic 25.0%
! TTGAAGAATATTTGTACACA+TGG - Chr6:13415110-13415129 None:intergenic 25.0%
! TTTCCAAACTTTCAGATTAA+AGG + Chr6:13415074-13415093 MsG0680031057.01.T01:three_prime_UTR 25.0%
!! AGTCAATTGATTTCATAATC+AGG + Chr6:13412898-13412917 MsG0680031057.01.T01:CDS 25.0%
!! ATTTCATAATCAGGTTTTCT+AGG + Chr6:13412907-13412926 MsG0680031057.01.T01:CDS 25.0%
!! TACAGATTAGTTAATGCTTA+TGG - Chr6:13413984-13414003 None:intergenic 25.0%
!! TAGTATACATTTTGTGGTTT+AGG + Chr6:13414162-13414181 MsG0680031057.01.T01:intron 25.0%
!! TTTCATAATCAGGTTTTCTA+GGG + Chr6:13412908-13412927 MsG0680031057.01.T01:CDS 25.0%
!! TTTTTCACTCAAGTACAAAT+TGG + Chr6:13413539-13413558 MsG0680031057.01.T01:intron 25.0%
!!! AATGAATGACTTGTTGTTAA+TGG + Chr6:13415504-13415523 MsG0680031057.01.T01:three_prime_UTR 25.0%
!!! AGATTATTTTGGTTAATTCC+TGG + Chr6:13414051-13414070 MsG0680031057.01.T01:intron 25.0%
!!! AGGAAGTGTTTTTATATACT+TGG + Chr6:13414106-13414125 MsG0680031057.01.T01:intron 25.0%
!!! ATATGTGTTTTAAGTACCAT+CGG + Chr6:13413002-13413021 MsG0680031057.01.T01:CDS 25.0%
!!! GATTGATAGTATACATTTTG+TGG + Chr6:13414156-13414175 MsG0680031057.01.T01:intron 25.0%
!!! GTATAAATGTAAGTTGGTTA+TGG + Chr6:13413919-13413938 MsG0680031057.01.T01:intron 25.0%
!!! TTTGTCATAAAAGTGTTACA+TGG - Chr6:13413611-13413630 None:intergenic 25.0%
AAATCTATGAAGCAAACAAG+TGG - Chr6:13414278-13414297 None:intergenic 30.0%
AACTAAAACAGATACGATTC+TGG + Chr6:13414922-13414941 MsG0680031057.01.T01:CDS 30.0%
AAGATCAATAAACAACTAGG+TGG + Chr6:13413454-13413473 MsG0680031057.01.T01:intron 30.0%
ATAGATTAGACAACCATGTT+AGG + Chr6:13413350-13413369 MsG0680031057.01.T01:intron 30.0%
ATCATGTACATGATCATTGT+TGG + Chr6:13413032-13413051 MsG0680031057.01.T01:CDS 30.0%
CAGAAAAGGAAATTGAGTAA+TGG + Chr6:13415474-13415493 MsG0680031057.01.T01:three_prime_UTR 30.0%
CTCAATGCATAGAAAATTAC+AGG - Chr6:13414578-13414597 None:intergenic 30.0%
CTGTATGTGTGAAAAAGTTA+GGG + Chr6:13412826-13412845 MsG0680031057.01.T01:CDS 30.0%
CTTTAATGTTGTAAATGTGG+AGG + Chr6:13415350-13415369 MsG0680031057.01.T01:three_prime_UTR 30.0%
GATTTGCATGAAGAAGATTA+AGG + Chr6:13413941-13413960 MsG0680031057.01.T01:intron 30.0%
GTAATAAAGGATAACAAGTC+TGG - Chr6:13415400-13415419 None:intergenic 30.0%
GTTCCTTTAATCTGAAAGTT+TGG - Chr6:13415080-13415099 None:intergenic 30.0%
TCCAAGATCAGTATCAAAAT+TGG - Chr6:13414486-13414505 None:intergenic 30.0%
TCTTCCTATGGAAATCTTAT+GGG + Chr6:13412942-13412961 MsG0680031057.01.T01:CDS 30.0%
TGAAAAGTGAAAATGACTAG+TGG + Chr6:13412615-13412634 MsG0680031057.01.T01:exon 30.0%
TGAGTGAAAAAAGTGAGTAT+TGG - Chr6:13413530-13413549 None:intergenic 30.0%
TGGAAAATAACCCAAATGTT+AGG - Chr6:13414722-13414741 None:intergenic 30.0%
TTCCACGTACTAATAAACAT+CGG + Chr6:13414223-13414242 MsG0680031057.01.T01:intron 30.0%
TTCTTCCTATGGAAATCTTA+TGG + Chr6:13412941-13412960 MsG0680031057.01.T01:CDS 30.0%
! AACCTTGTTTATAACAGAGT+TGG + Chr6:13415157-13415176 MsG0680031057.01.T01:three_prime_UTR 30.0%
! ACCTTGTTTATAACAGAGTT+GGG + Chr6:13415158-13415177 MsG0680031057.01.T01:three_prime_UTR 30.0%
! CTGTAATTTTCTATGCATTG+AGG + Chr6:13414576-13414595 MsG0680031057.01.T01:CDS 30.0%
! TATTCTTCAAAAGTGTGTGA+AGG + Chr6:13415120-13415139 MsG0680031057.01.T01:three_prime_UTR 30.0%
! TGATATTTTCCTCATCAAGA+AGG + Chr6:13414615-13414634 MsG0680031057.01.T01:CDS 30.0%
!! AATTATTGGTGCTGGAATTA+TGG + Chr6:13412797-13412816 MsG0680031057.01.T01:CDS 30.0%
!! ATTATTGGTGCTGGAATTAT+GGG + Chr6:13412798-13412817 MsG0680031057.01.T01:CDS 30.0%
!!! AGTTTTGTTGCGAAGTTATA+TGG + Chr6:13413578-13413597 MsG0680031057.01.T01:intron 30.0%
!!! CGGGTTTATTTTGTTTTTGA+TGG + Chr6:13412543-13412562 MsG0680031057.01.T01:intron 30.0%
!!! GATTTTTTCTTCTCTGCATT+AGG - Chr6:13412651-13412670 None:intergenic 30.0%
AATTCCAGCACCAATAATTG+TGG - Chr6:13412796-13412815 None:intergenic 35.0%
ACATCACTTTCTTCTGTCTT+AGG - Chr6:13412717-13412736 None:intergenic 35.0%
ACCCAACTCTGTTATAAACA+AGG - Chr6:13415162-13415181 None:intergenic 35.0%
ACTTACTGACAAGCTTCTTT+GGG + Chr6:13414420-13414439 MsG0680031057.01.T01:CDS 35.0%
ATCCTTTATTACTGCAAGTG+AGG + Chr6:13415408-13415427 MsG0680031057.01.T01:three_prime_UTR 35.0%
ATCTCCCATAAGATTTCCAT+AGG - Chr6:13412949-13412968 None:intergenic 35.0%
ATGTGTGAAAAAGTTAGGGA+TGG + Chr6:13412830-13412849 MsG0680031057.01.T01:CDS 35.0%
ATTGTAGGTGATGTGATTTC+TGG + Chr6:13413141-13413160 MsG0680031057.01.T01:intron 35.0%
CCTGTATGTGTGAAAAAGTT+AGG + Chr6:13412825-13412844 MsG0680031057.01.T01:CDS 35.0%
CTGAAGTTATCAACAACCAA+AGG - Chr6:13414641-13414660 None:intergenic 35.0%
GAGGAAGATAATGACAACAA+GGG - Chr6:13414684-13414703 None:intergenic 35.0%
GTGCATCATTAGTCAAAACA+CGG + Chr6:13414076-13414095 MsG0680031057.01.T01:intron 35.0%
TACCTCACTTGCAGTAATAA+AGG - Chr6:13415413-13415432 None:intergenic 35.0%
TACTTACTGACAAGCTTCTT+TGG + Chr6:13414419-13414438 MsG0680031057.01.T01:CDS 35.0%
TATACTATCAATCGTCGTGT+TGG - Chr6:13414149-13414168 None:intergenic 35.0%
TCAAAGCATAGAGAATGAAC+TGG + Chr6:13414337-13414356 MsG0680031057.01.T01:CDS 35.0%
TCTCTGTCAATAAAGCTGTT+AGG - Chr6:13412878-13412897 None:intergenic 35.0%
TCTTCTGTCTTAGGTAACAA+AGG - Chr6:13412708-13412727 None:intergenic 35.0%
TGTCTAATCTATAGCCGTTT+CGG - Chr6:13413342-13413361 None:intergenic 35.0%
TTCACGTCTGCATTATCAAT+TGG + Chr6:13413671-13413690 MsG0680031057.01.T01:CDS 35.0%
TTGTTGGGTTTCATCAGAAA+AGG + Chr6:13415460-13415479 MsG0680031057.01.T01:three_prime_UTR 35.0%
TTTGAGTCATCTTCCTAACA+TGG - Chr6:13413366-13413385 None:intergenic 35.0%
! CTTAATGGAGCTTCATTTTC+TGG + Chr6:13412750-13412769 MsG0680031057.01.T01:CDS 35.0%
! CTTGATAATTGAGATCCCTA+CGG - Chr6:13413723-13413742 None:intergenic 35.0%
! CTTGTTGTCATTATCTTCCT+CGG + Chr6:13414683-13414702 MsG0680031057.01.T01:CDS 35.0%
! GATTGGTGAGTGATTTTTCT+TGG + Chr6:13413296-13413315 MsG0680031057.01.T01:intron 35.0%
! TATGTTGTATCGATCTCTGT+AGG - Chr6:13414900-13414919 None:intergenic 35.0%
! TTCTTTGGGTTCCTACTATT+TGG + Chr6:13414434-13414453 MsG0680031057.01.T01:CDS 35.0%
! TTTTCCTTATCATTGCCGTA+GGG + Chr6:13413705-13413724 MsG0680031057.01.T01:CDS 35.0%
!! ATTTCTGGAACAACTTCAAG+TGG + Chr6:13413156-13413175 MsG0680031057.01.T01:CDS 35.0%
!! GCCAATTTTGATACTGATCT+TGG + Chr6:13414482-13414501 MsG0680031057.01.T01:CDS 35.0%
!! TGGGTTATTTTCCAATTCAC+TGG + Chr6:13414728-13414747 MsG0680031057.01.T01:CDS 35.0%
!!! CCTAACTTTTTCACACATAC+AGG - Chr6:13412828-13412847 None:intergenic 35.0%
AAAAAGTTAGGGATGGTACC+TGG + Chr6:13412837-13412856 MsG0680031057.01.T01:CDS 40.0%
AAACAACTAGGTGGTACACA+TGG + Chr6:13413463-13413482 MsG0680031057.01.T01:intron 40.0%
AACAAGGTTGAACATGTTGC+AGG - Chr6:13415146-13415165 None:intergenic 40.0%
AAGATTATTAGTGGCGGCAT+TGG + Chr6:13413740-13413759 MsG0680031057.01.T01:CDS 40.0%
AAGCATAGAGAATGAACTGG+AGG + Chr6:13414340-13414359 MsG0680031057.01.T01:CDS 40.0%
AATCTTATGGGAGATGCCTT+TGG + Chr6:13412954-13412973 MsG0680031057.01.T01:CDS 40.0%
ACTGATCTTGGAATTCCCTT+CGG + Chr6:13414494-13414513 MsG0680031057.01.T01:CDS 40.0%
AGATTATTAGTGGCGGCATT+GGG + Chr6:13413741-13413760 MsG0680031057.01.T01:CDS 40.0%
AGGACTATGACAATAAGACC+AGG - Chr6:13412858-13412877 None:intergenic 40.0%
AGGATAACAAGTCTGGGAAA+TGG - Chr6:13415393-13415412 None:intergenic 40.0%
AGGTGGTACACATGGTTATT+TGG + Chr6:13413471-13413490 MsG0680031057.01.T01:intron 40.0%
AGTCAAAACACGGAACACTA+AGG + Chr6:13414086-13414105 MsG0680031057.01.T01:intron 40.0%
ATCTTATGGGAGATGCCTTT+GGG + Chr6:13412955-13412974 MsG0680031057.01.T01:CDS 40.0%
CGAGGAAGATAATGACAACA+AGG - Chr6:13414685-13414704 None:intergenic 40.0%
GAACTCCTTCACCAAATAGT+AGG - Chr6:13414448-13414467 None:intergenic 40.0%
GCTTACGTATGTCACTACAA+TGG + Chr6:13413842-13413861 MsG0680031057.01.T01:CDS 40.0%
TCAACCACAATTATTGGTGC+TGG + Chr6:13412789-13412808 MsG0680031057.01.T01:CDS 40.0%
TCGGTCACTGAATTCATACA+AGG + Chr6:13414811-13414830 MsG0680031057.01.T01:intron 40.0%
TCTGATGCCGTATATGAATG+TGG + Chr6:13415199-13415218 MsG0680031057.01.T01:three_prime_UTR 40.0%
TGCCGATGTTTATTAGTACG+TGG - Chr6:13414228-13414247 None:intergenic 40.0%
TTAGGAAGATGACTCAAACG+CGG + Chr6:13413368-13413387 MsG0680031057.01.T01:intron 40.0%
TTGACTAATGATGCACAACC+AGG - Chr6:13414072-13414091 None:intergenic 40.0%
! CTTTTCCTTATCATTGCCGT+AGG + Chr6:13413704-13413723 MsG0680031057.01.T01:CDS 40.0%
! TACATTTTGTGGTTTAGGCC+TGG + Chr6:13414167-13414186 MsG0680031057.01.T01:intron 40.0%
! TACTTTCGCAACATTTGCTG+TGG + Chr6:13413248-13413267 MsG0680031057.01.T01:CDS 40.0%
! TAGGTATGAAATTTGCTCCG+AGG - Chr6:13414703-13414722 None:intergenic 40.0%
! TGCTTTTCCGTATTTCCCAA+AGG - Chr6:13412973-13412992 None:intergenic 40.0%
!! AGTCGTGTCATTTACCGAAA+CGG + Chr6:13413325-13413344 MsG0680031057.01.T01:intron 40.0%
!! GAAATACGGAAAAGCATCGT+TGG + Chr6:13412977-13412996 MsG0680031057.01.T01:CDS 40.0%
!!! ATAATCAGGTTTTCTAGGGC+AGG + Chr6:13412912-13412931 MsG0680031057.01.T01:CDS 40.0%
!!! TAATCAGGTTTTCTAGGGCA+GGG + Chr6:13412913-13412932 MsG0680031057.01.T01:CDS 40.0%
AAACCGCCAGCACTATCATA+AGG - Chr6:13414952-13414971 None:intergenic 45.0%
AACCAAAGGCCTTCTTGATG+AGG - Chr6:13414627-13414646 None:intergenic 45.0%
AAGCTGCATCAGTAATGACC+GGG - Chr6:13413781-13413800 None:intergenic 45.0%
ACACTGACGAGCATAGAGTA+AGG - Chr6:13414400-13414419 None:intergenic 45.0%
ACGTAAGCTGTCATTAGCAC+AGG - Chr6:13413830-13413849 None:intergenic 45.0%
AGATCCCTACGGCAATGATA+AGG - Chr6:13413712-13413731 None:intergenic 45.0%
ATCCGCTTAAAGCTGACCAA+AGG - Chr6:13413279-13413298 None:intergenic 45.0%
ATGAACTGGAGGATTCCTCA+CGG + Chr6:13414351-13414370 MsG0680031057.01.T01:CDS 45.0%
CACTGACGAGCATAGAGTAA+GGG - Chr6:13414399-13414418 None:intergenic 45.0%
GAAGCTGCATCAGTAATGAC+CGG - Chr6:13413782-13413801 None:intergenic 45.0%
GCAGGGAAACTTTCTTCCTA+TGG + Chr6:13412930-13412949 MsG0680031057.01.T01:CDS 45.0%
GCATTGAGGTTCAACGTAGA+TGG + Chr6:13414590-13414609 MsG0680031057.01.T01:CDS 45.0%
GTACATGATCAGACTACCGA+TGG - Chr6:13413021-13413040 None:intergenic 45.0%
TACAACCACATCAAGCAACC+AGG - Chr6:13414188-13414207 None:intergenic 45.0%
TAGGAAGATGACTCAAACGC+GGG + Chr6:13413369-13413388 MsG0680031057.01.T01:intron 45.0%
TAGTACGTGGAATCAGCTTG+TGG - Chr6:13414215-13414234 None:intergenic 45.0%
TCAAGTGGAATTCACCATGC+TGG + Chr6:13413171-13413190 MsG0680031057.01.T01:CDS 45.0%
TTCCAATTCACTGGAGCAAC+AGG + Chr6:13414737-13414756 MsG0680031057.01.T01:CDS 45.0%
TTCCTCATCAAGAAGGCCTT+TGG + Chr6:13414622-13414641 MsG0680031057.01.T01:CDS 45.0%
TTTCTCTCGCTCAGTCATGT+CGG - Chr6:13415247-13415266 None:intergenic 45.0%
! ACTGCAAGTGAGGTATTTGC+TGG + Chr6:13415418-13415437 MsG0680031057.01.T01:three_prime_UTR 45.0%
! GGAGATGCCTTTGGGAAATA+CGG + Chr6:13412963-13412982 MsG0680031057.01.T01:CDS 45.0%
! GGGTTCCTACTATTTGGTGA+AGG + Chr6:13414440-13414459 MsG0680031057.01.T01:CDS 45.0%
! TGTCCTTATGATAGTGCTGG+CGG + Chr6:13414946-13414965 MsG0680031057.01.T01:CDS 45.0%
!! AAGGATGGTTTGGTGTCCAT+TGG + Chr6:13413202-13413221 MsG0680031057.01.T01:CDS 45.0%
!! ATTTGCTGTGGTTGCACCTT+TGG + Chr6:13413260-13413279 MsG0680031057.01.T01:CDS 45.0%
!! CAATCGCTCTAAGGTGAGTT+CGG + Chr6:13414792-13414811 MsG0680031057.01.T01:intron 45.0%
!! CACCTTTGGTCAGCTTTAAG+CGG + Chr6:13413274-13413293 MsG0680031057.01.T01:CDS 45.0%
!! TTGGTCAGCTTTAAGCGGAT+TGG + Chr6:13413279-13413298 MsG0680031057.01.T01:CDS 45.0%
AACGCGGGACGGTAATTGTA+TGG + Chr6:13413384-13413403 MsG0680031057.01.T01:intron 50.0%
AAGATGACTCAAACGCGGGA+CGG + Chr6:13413373-13413392 MsG0680031057.01.T01:intron 50.0%
ATCATTGAGCGCAGAACCGA+AGG - Chr6:13414513-13414532 None:intergenic 50.0%
ATCCTTCAAGGACACCAGCA+TGG - Chr6:13413188-13413207 None:intergenic 50.0%
ATGCTGGTGTCCTTGAAGGA+TGG + Chr6:13413187-13413206 MsG0680031057.01.T01:CDS 50.0%
CACAACACCATGTATCCGTG+AGG - Chr6:13414369-13414388 None:intergenic 50.0%
CACCTGTTGCTCCAGTGAAT+TGG - Chr6:13414742-13414761 None:intergenic 50.0%
GAGGATTCCTCACGGATACA+TGG + Chr6:13414359-13414378 MsG0680031057.01.T01:CDS 50.0%
GGACACCAAACCATCCTTCA+AGG - Chr6:13413200-13413219 None:intergenic 50.0%
GGTGTCCTTGAAGGATGGTT+TGG + Chr6:13413192-13413211 MsG0680031057.01.T01:CDS 50.0%
GTAATGACCGGGAAGAGTCT+AGG - Chr6:13413770-13413789 None:intergenic 50.0%
TCATTGAGCGCAGAACCGAA+GGG - Chr6:13414512-13414531 None:intergenic 50.0%
TTAGGCCTGGTTGCTTGATG+TGG + Chr6:13414180-13414199 MsG0680031057.01.T01:intron 50.0%
TTCCAGCTGCAATCGCTCTA+AGG + Chr6:13414783-13414802 MsG0680031057.01.T01:CDS 50.0%
! GGCTGTCCTTATGATAGTGC+TGG + Chr6:13414943-13414962 MsG0680031057.01.T01:CDS 50.0%
!! GATGGTTTGGTGTCCATTGG+TGG + Chr6:13413205-13413224 MsG0680031057.01.T01:CDS 50.0%
!! GGCGGTTTTGTCAAATGCTG+TGG + Chr6:13414964-13414983 MsG0680031057.01.T01:CDS 50.0%
!! TTGGTGTCCATTGGTGGACT+GGG + Chr6:13413211-13413230 MsG0680031057.01.T01:CDS 50.0%
!! TTTGGTGTCCATTGGTGGAC+TGG + Chr6:13413210-13413229 MsG0680031057.01.T01:CDS 50.0%
ATGTACGCCCAGTCCACCAA+TGG - Chr6:13413221-13413240 None:intergenic 55.0%
CACCATGCTGGTGTCCTTGA+AGG + Chr6:13413183-13413202 MsG0680031057.01.T01:CDS 55.0%
CACCTTAGAGCGATTGCAGC+TGG - Chr6:13414788-13414807 None:intergenic 55.0%
TGGGATGCCTAGACTCTTCC+CGG + Chr6:13413760-13413779 MsG0680031057.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 13412489 13415529 13412489 ID=MsG0680031057.01;Name=MsG0680031057.01
Chr6 mRNA 13412489 13415529 13412489 ID=MsG0680031057.01.T01;Parent=MsG0680031057.01;Name=MsG0680031057.01.T01;_AED=0.46;_eAED=0.46;_QI=101|1|1|1|0.8|0.66|6|496|460
Chr6 exon 13412489 13412550 13412489 ID=MsG0680031057.01.T01:exon:9462;Parent=MsG0680031057.01.T01
Chr6 exon 13412588 13413053 13412588 ID=MsG0680031057.01.T01:exon:9463;Parent=MsG0680031057.01.T01
Chr6 exon 13413148 13413300 13413148 ID=MsG0680031057.01.T01:exon:9464;Parent=MsG0680031057.01.T01
Chr6 exon 13413660 13413863 13413660 ID=MsG0680031057.01.T01:exon:9465;Parent=MsG0680031057.01.T01
Chr6 exon 13414336 13414804 13414336 ID=MsG0680031057.01.T01:exon:9466;Parent=MsG0680031057.01.T01
Chr6 exon 13414904 13415529 13414904 ID=MsG0680031057.01.T01:exon:9467;Parent=MsG0680031057.01.T01
Chr6 five_prime_UTR 13412489 13412550 13412489 ID=MsG0680031057.01.T01:five_prime_utr;Parent=MsG0680031057.01.T01
Chr6 five_prime_UTR 13412588 13412626 13412588 ID=MsG0680031057.01.T01:five_prime_utr;Parent=MsG0680031057.01.T01
Chr6 CDS 13412627 13413053 13412627 ID=MsG0680031057.01.T01:cds;Parent=MsG0680031057.01.T01
Chr6 CDS 13413148 13413300 13413148 ID=MsG0680031057.01.T01:cds;Parent=MsG0680031057.01.T01
Chr6 CDS 13413660 13413863 13413660 ID=MsG0680031057.01.T01:cds;Parent=MsG0680031057.01.T01
Chr6 CDS 13414336 13414804 13414336 ID=MsG0680031057.01.T01:cds;Parent=MsG0680031057.01.T01
Chr6 CDS 13414904 13415033 13414904 ID=MsG0680031057.01.T01:cds;Parent=MsG0680031057.01.T01
Chr6 three_prime_UTR 13415034 13415529 13415034 ID=MsG0680031057.01.T01:three_prime_utr;Parent=MsG0680031057.01.T01
Gene Sequence

>MsG0680031057.01.T01

ATGACTAGTGGAATTCAAGTACCTAATGCAGAGAAGAAAAAATCAAGAAAGAACAACACAATTATTGATGTGAATGCACCTTTGTTACCTAAGACAGAAGAAAGTGATGTTAAGTTTGATGAACTTAATGGAGCTTCATTTTCTGGTGCTGTTTTCAATTTATCAACCACAATTATTGGTGCTGGAATTATGGGATTGCCTGTATGTGTGAAAAAGTTAGGGATGGTACCTGGTCTTATTGTCATAGTCCTAACAGCTTTATTGACAGAGAAGTCAATTGATTTCATAATCAGGTTTTCTAGGGCAGGGAAACTTTCTTCCTATGGAAATCTTATGGGAGATGCCTTTGGGAAATACGGAAAAGCATCGTTGGAGATATGTGTTTTAAGTACCATCGGTAGTCTGATCATGTACATGATCATTGTTGGTGATGTGATTTCTGGAACAACTTCAAGTGGAATTCACCATGCTGGTGTCCTTGAAGGATGGTTTGGTGTCCATTGGTGGACTGGGCGTACATTTGTTATTACTTTCGCAACATTTGCTGTGGTTGCACCTTTGGTCAGCTTTAAGCGGATTGATTCATTGAGATTCACGTCTGCATTATCAATTGGATTAGCAGTTCTTTTCCTTATCATTGCCGTAGGGATCTCAATTATCAAGATTATTAGTGGCGGCATTGGGATGCCTAGACTCTTCCCGGTCATTACTGATGCAGCTTCAGTTTTCGATCTATTCACTGTAGTTCCTGTGCTAATGACAGCTTACGTATGTCACTACAATGTTCAAAGCATAGAGAATGAACTGGAGGATTCCTCACGGATACATGGTGTTGTGCGTACTTCCCTTACTCTATGCTCGTCAGTGTACTTACTGACAAGCTTCTTTGGGTTCCTACTATTTGGTGAAGGAGTTCTTGATGATGTGCTTGCCAATTTTGATACTGATCTTGGAATTCCCTTCGGTTCTGCGCTCAATGATGCTGTTCGTTTGAGCTATGCTGCGCATCTTGTGCTTGTATTTCCTGTAATTTTCTATGCATTGAGGTTCAACGTAGATGGTCTGATATTTTCCTCATCAAGAAGGCCTTTGGTTGTTGATAACTTCAGATTTGCATCAGTTACTATTGCCCTTGTTGTCATTATCTTCCTCGGAGCAAATTTCATACCTAACATTTGGGTTATTTTCCAATTCACTGGAGCAACAGGTGCTGTTTGTATAGCATTCATATTTCCAGCTGCAATCGCTCTAAGAGATCGATACAACATAGCAACTAAAACAGATACGATTCTGGCTGTCCTTATGATAGTGCTGGCGGTTTTGTCAAATGCTGTGGCGATATACAGTGATGCTTATGCTTTGATCAACGAGAAGAAAGCATAA
Protein sequence

>MsG0680031057.01.T01

MTSGIQVPNAEKKKSRKNNTIIDVNAPLLPKTEESDVKFDELNGASFSGAVFNLSTTIIGAGIMGLPVCVKKLGMVPGLIVIVLTALLTEKSIDFIIRFSRAGKLSSYGNLMGDAFGKYGKASLEICVLSTIGSLIMYMIIVGDVISGTTSSGIHHAGVLEGWFGVHWWTGRTFVITFATFAVVAPLVSFKRIDSLRFTSALSIGLAVLFLIIAVGISIIKIISGGIGMPRLFPVITDAASVFDLFTVVPVLMTAYVCHYNVQSIENELEDSSRIHGVVRTSLTLCSSVYLLTSFFGFLLFGEGVLDDVLANFDTDLGIPFGSALNDAVRLSYAAHLVLVFPVIFYALRFNVDGLIFSSSRRPLVVDNFRFASVTIALVVIIFLGANFIPNIWVIFQFTGATGAVCIAFIFPAAIALRDRYNIATKTDTILAVLMIVLAVLSNAVAIYSDAYALINEKKA*