AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033050.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033050.01.T01 MTR_1g106600 88.670 203 23 0 1 203 1 203 1.17e-133 382
MsG0680033050.01.T01 MTR_6g025650 88.177 203 24 0 1 203 1 203 5.91e-133 380
MsG0680033050.01.T01 MTR_6g018520 88.177 203 24 0 1 203 1 203 5.91e-133 380
MsG0680033050.01.T01 MTR_1g106608 86.700 203 27 0 1 203 1 203 1.17e-130 374
MsG0680033050.01.T01 MTR_7g111990 83.594 128 21 0 1 128 1 128 7.35e-74 223
MsG0680033050.01.T01 MTR_0002s1260 68.868 106 14 2 89 194 1 87 1.65e-37 130
MsG0680033050.01.T01 MTR_0002s1240 68.868 106 14 2 89 194 1 87 1.65e-37 130
MsG0680033050.01.T01 MTR_3g097540 87.692 65 8 0 133 197 1 65 3.06e-25 99.8
MsG0680033050.01.T01 MTR_7g017480 62.069 58 19 1 121 178 24 78 2.71e-15 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033050.01.T01 AT5G27260 41.566 166 91 2 1 166 1 160 2.01e-35 129
MsG0680033050.01.T01 AT2G29880 38.596 171 104 1 1 171 1 170 5.53e-34 125
MsG0680033050.01.T01 AT1G30140 31.053 190 121 3 12 201 7 186 5.91e-25 99.8
MsG0680033050.01.T01 AT1G30140 31.053 190 121 3 12 201 7 186 5.91e-25 99.8

Find 58 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAACCTTGGAATCAAATT+TGG 0.111653 6:+55532116 MsG0680033050.01.T01:CDS
TGGGCATTGGGGAGTCAAAA+TGG 0.225650 6:+55532136 MsG0680033050.01.T01:CDS
TGAGTTGTTGTTCCTCTTGA+TGG 0.249705 6:+55530482 MsG0680033050.01.T01:CDS
GGGGAGTCAAAATGGGGTTT+TGG 0.263205 6:+55532144 MsG0680033050.01.T01:CDS
ATGCGTAACAACTCTGGTTT+TGG 0.286642 6:+55530675 MsG0680033050.01.T01:CDS
TGGAATCAAATTTGGGCATT+GGG 0.333141 6:+55532124 MsG0680033050.01.T01:CDS
TACGGTGGTTCATAGTTATC+TGG 0.342012 6:-55531054 None:intergenic
TGCTATGAATGCATCACTAT+TGG 0.349730 6:-55531031 None:intergenic
CAAACCTTGGAATCAAATTT+GGG 0.359695 6:+55532117 MsG0680033050.01.T01:CDS
GAGCAAGAAAGTGAAAGTTT+TGG 0.364343 6:+55530985 MsG0680033050.01.T01:CDS
AGTATGGAGTAATTACTTAA+AGG 0.368835 6:+55530737 MsG0680033050.01.T01:CDS
TGCGAGCAGCAGGGGCTCCC+TGG 0.380395 6:+55532236 MsG0680033050.01.T01:CDS
AGAGGGTTACATGATGCTAA+TGG 0.387354 6:+55530516 MsG0680033050.01.T01:CDS
GGGCATTGGGGAGTCAAAAT+GGG 0.392454 6:+55532137 MsG0680033050.01.T01:CDS
GAGTTCTAAACCACTTCATT+CGG 0.405087 6:-55530629 None:intergenic
TGCCATTGCGAGTTAGCTCC+AGG 0.407292 6:-55532254 None:intergenic
GCGAGTTGGATGCGAGCAGC+AGG 0.413018 6:+55532226 MsG0680033050.01.T01:CDS
TTGGAATCAAATTTGGGCAT+TGG 0.433773 6:+55532123 MsG0680033050.01.T01:CDS
GATTATTTGAAGATTCTTGT+TGG 0.439501 6:+55530895 MsG0680033050.01.T01:CDS
TTGAAGATTCTTGTTGGAGG+TGG 0.445118 6:+55530901 MsG0680033050.01.T01:CDS
ACACGGCTACTGAAGAAGTA+TGG 0.447236 6:+55530721 MsG0680033050.01.T01:CDS
TTGATGGATGCTATAAATAG+AGG 0.448428 6:+55530498 MsG0680033050.01.T01:CDS
TCACAACAAGAAAATAATAG+AGG 0.460305 6:+55530408 MsG0680033050.01.T01:CDS
AAATCGGGCTATTACAGGTT+AGG 0.464233 6:-55531090 None:intergenic
GCTATGAATGCATCACTATT+GGG 0.464417 6:-55531030 None:intergenic
GAGGGTTACATGATGCTAAT+GGG 0.468879 6:+55530517 MsG0680033050.01.T01:CDS
AGAAATGTTTGGACAAACCT+TGG 0.476387 6:+55532104 MsG0680033050.01.T01:CDS
AATGCCCAAATTTGATTCCA+AGG 0.480239 6:-55532121 None:intergenic
ACGTTTATGCGTAACAACTC+TGG 0.489769 6:+55530669 MsG0680033050.01.T01:CDS
CCAACTCGCCATTGCGAGCA+CGG 0.505950 6:-55532212 None:intergenic
ACAAAGATGGCTATGTAGCT+TGG 0.507788 6:+55530442 MsG0680033050.01.T01:CDS
AAATAATAGAGGGAAGGGTA+AGG 0.512824 6:+55530419 MsG0680033050.01.T01:CDS
TTAGGTGATGGAGGTTGGTA+CGG 0.529410 6:-55531072 None:intergenic
CAAGAAAATAATAGAGGGAA+GGG 0.542379 6:+55530414 MsG0680033050.01.T01:CDS
GAGTTGGATGCGAGCAGCAG+GGG 0.549903 6:+55532228 MsG0680033050.01.T01:CDS
ACAGGTTAGGTGATGGAGGT+TGG 0.552965 6:-55531077 None:intergenic
GCGAGTTGTGACAGTAGTGT+CGG 0.553393 6:-55532187 None:intergenic
CGAGTTGTGACAGTAGTGTC+GGG 0.554246 6:-55532186 None:intergenic
GGCTATTACAGGTTAGGTGA+TGG 0.555367 6:-55531084 None:intergenic
ACAAGAAAATAATAGAGGGA+AGG 0.566433 6:+55530413 MsG0680033050.01.T01:CDS
CCGTGCTCGCAATGGCGAGT+TGG 0.566960 6:+55532212 MsG0680033050.01.T01:CDS
GGCATTGGGGAGTCAAAATG+GGG 0.567658 6:+55532138 MsG0680033050.01.T01:CDS
ATTACTTGAGCCGAATGAAG+TGG 0.570458 6:+55530619 MsG0680033050.01.T01:CDS
GGAATCAAATTTGGGCATTG+GGG 0.584385 6:+55532125 MsG0680033050.01.T01:CDS
TCCCTGGAGCTAACTCGCAA+TGG 0.585757 6:+55532252 MsG0680033050.01.T01:CDS
CGAGTTGGATGCGAGCAGCA+GGG 0.588757 6:+55532227 MsG0680033050.01.T01:CDS
CACAACAAGAAAATAATAGA+GGG 0.595053 6:+55530409 MsG0680033050.01.T01:CDS
TATTTGAAGATTCTTGTTGG+AGG 0.595361 6:+55530898 MsG0680033050.01.T01:CDS
TATTTATAGCATCCATCAAG+AGG 0.595447 6:-55530494 None:intergenic
TGATGGATGCTATAAATAGA+GGG 0.599601 6:+55530499 MsG0680033050.01.T01:CDS
ACTCGCCACCGTGCTCGCAA+TGG 0.599693 6:+55532204 MsG0680033050.01.T01:CDS
TTCTATAGCATTAGACGCTG+AGG 0.600384 6:+55530942 MsG0680033050.01.T01:CDS
GGGAAGGGTAAGGACAAAGA+TGG 0.603944 6:+55530429 MsG0680033050.01.T01:CDS
GGTGATGGAGGTTGGTACGG+TGG 0.605354 6:-55531069 None:intergenic
TATTACAGGTTAGGTGATGG+AGG 0.616866 6:-55531081 None:intergenic
TTCAGTTGCAAAGACTTACA+CGG 0.635359 6:+55530704 MsG0680033050.01.T01:CDS
GCCATTGCGAGTTAGCTCCA+GGG 0.635414 6:-55532253 None:intergenic
ACTCGCCATTGCGAGCACGG+TGG 0.746293 6:-55532209 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAAAGTTATGAATTA+TGG - Chr6:55531682-55531701 None:intergenic 15.0%
!! AATAAATCTAATCGAAAAAT+CGG - Chr6:55531109-55531128 None:intergenic 15.0%
!!! TTGAAGTTTTAATGAAAAAT+GGG + Chr6:55532010-55532029 MsG0680033050.01.T01:intron 15.0%
!!! TTTGAAGTTTTAATGAAAAA+TGG + Chr6:55532009-55532028 MsG0680033050.01.T01:intron 15.0%
!! AATTATTGATGAATTCATGA+TGG + Chr6:55531895-55531914 MsG0680033050.01.T01:intron 20.0%
!! AATTCATCAATTTCACAAAA+TGG - Chr6:55531709-55531728 None:intergenic 20.0%
!! ATAAATCTAATCGAAAAATC+GGG - Chr6:55531108-55531127 None:intergenic 20.0%
!! ATTCATCAATTTCACAAAAT+GGG - Chr6:55531708-55531727 None:intergenic 20.0%
!! GCACAAATTTACAATTAATT+AGG - Chr6:55531735-55531754 None:intergenic 20.0%
!!! CTACTAACATTAGTTTATAT+AGG - Chr6:55531490-55531509 None:intergenic 20.0%
!!! TAATTTTGTAATTTTGCTGA+AGG + Chr6:55531277-55531296 MsG0680033050.01.T01:intron 20.0%
!!! TTTGAGGTTAAAATAGAAAT+GGG + Chr6:55531422-55531441 MsG0680033050.01.T01:intron 20.0%
!!! TTTTCATGTTTAGAAATGTT+TGG + Chr6:55532093-55532112 MsG0680033050.01.T01:CDS 20.0%
!!! TTTTGAGGTTAAAATAGAAA+TGG + Chr6:55531421-55531440 MsG0680033050.01.T01:intron 20.0%
! AAATGTTACTACTCACTTAA+CGG - Chr6:55531403-55531422 None:intergenic 25.0%
! ACTAATGTTAGTAGAGAAAT+AGG + Chr6:55531496-55531515 MsG0680033050.01.T01:intron 25.0%
! AGTATGGAGTAATTACTTAA+AGG + Chr6:55530737-55530756 MsG0680033050.01.T01:CDS 25.0%
! CACAACAAGAAAATAATAGA+GGG + Chr6:55530409-55530428 MsG0680033050.01.T01:CDS 25.0%
! CGGTAAAAATATAACACTAA+CGG - Chr6:55531383-55531402 None:intergenic 25.0%
! CTAATGTTAGTAGAGAAATA+GGG + Chr6:55531497-55531516 MsG0680033050.01.T01:intron 25.0%
! GAAATTACATGCTTAAATTG+TGG + Chr6:55531814-55531833 MsG0680033050.01.T01:intron 25.0%
! GATTATTTGAAGATTCTTGT+TGG + Chr6:55530895-55530914 MsG0680033050.01.T01:CDS 25.0%
! TCACAACAAGAAAATAATAG+AGG + Chr6:55530408-55530427 MsG0680033050.01.T01:CDS 25.0%
! TCTTCTCAAATGAAAAATGT+TGG - Chr6:55531530-55531549 None:intergenic 25.0%
! TTATATAGGCTCACTTAATT+GGG - Chr6:55531476-55531495 None:intergenic 25.0%
! TTTATATAGGCTCACTTAAT+TGG - Chr6:55531477-55531496 None:intergenic 25.0%
!! TATTTTACCAAGTTACTAGA+GGG + Chr6:55531326-55531345 MsG0680033050.01.T01:intron 25.0%
!!! AATATTTTTGTGAGATGGAT+GGG - Chr6:55530851-55530870 None:intergenic 25.0%
!!! AGTTTTTTGTGATTCACTTT+TGG - Chr6:55530592-55530611 None:intergenic 25.0%
!!! ATTTTAGTCATTTTGGACTT+AGG + Chr6:55531226-55531245 MsG0680033050.01.T01:intron 25.0%
!!! ATTTTGTTGTAAGGTTGTTT+TGG + Chr6:55532043-55532062 MsG0680033050.01.T01:intron 25.0%
!!! CAAATGATGATTTTGTTGTA+AGG + Chr6:55532034-55532053 MsG0680033050.01.T01:intron 25.0%
!!! GTTTTGGTGCAAATTTTATA+TGG + Chr6:55532059-55532078 MsG0680033050.01.T01:CDS 25.0%
!!! TTATTTTACCAAGTTACTAG+AGG + Chr6:55531325-55531344 MsG0680033050.01.T01:intron 25.0%
!!! TTGTTGATGATTAAAACCTT+GGG + Chr6:55531947-55531966 MsG0680033050.01.T01:intron 25.0%
!!! TTTTAGTCATTTTGGACTTA+GGG + Chr6:55531227-55531246 MsG0680033050.01.T01:intron 25.0%
ACAAACCTTGGAATCAAATT+TGG + Chr6:55532116-55532135 MsG0680033050.01.T01:CDS 30.0%
ACAAGAAAATAATAGAGGGA+AGG + Chr6:55530413-55530432 MsG0680033050.01.T01:CDS 30.0%
CAAACCTTGGAATCAAATTT+GGG + Chr6:55532117-55532136 MsG0680033050.01.T01:CDS 30.0%
CAAGAAAATAATAGAGGGAA+GGG + Chr6:55530414-55530433 MsG0680033050.01.T01:CDS 30.0%
CTTATCTCACAAACCTTAAT+GGG - Chr6:55531453-55531472 None:intergenic 30.0%
TATTTATAGCATCCATCAAG+AGG - Chr6:55530497-55530516 None:intergenic 30.0%
TATTTGAAGATTCTTGTTGG+AGG + Chr6:55530898-55530917 MsG0680033050.01.T01:CDS 30.0%
TGTCCAAAAATGATGATATG+AGG + Chr6:55531859-55531878 MsG0680033050.01.T01:intron 30.0%
! ACACCTCATATCATCATTTT+TGG - Chr6:55531865-55531884 None:intergenic 30.0%
! AGTGAGTAGTAACATTTTTG+AGG + Chr6:55531406-55531425 MsG0680033050.01.T01:intron 30.0%
! TGATGGATGCTATAAATAGA+GGG + Chr6:55530499-55530518 MsG0680033050.01.T01:CDS 30.0%
! TTGATGGATGCTATAAATAG+AGG + Chr6:55530498-55530517 MsG0680033050.01.T01:CDS 30.0%
!! GAATATTTTTGTGAGATGGA+TGG - Chr6:55530852-55530871 None:intergenic 30.0%
!! GGACATTTTGATCATTTTGA+TGG + Chr6:55531248-55531267 MsG0680033050.01.T01:intron 30.0%
!! GTTGTTGATGATTAAAACCT+TGG + Chr6:55531946-55531965 MsG0680033050.01.T01:intron 30.0%
!!! AGAAAGTGAAAGTTTTGGAA+TGG + Chr6:55530990-55531009 MsG0680033050.01.T01:CDS 30.0%
!!! GAAGGGTATTTTAGTCATTT+TGG + Chr6:55531219-55531238 MsG0680033050.01.T01:intron 30.0%
!!! TCATGTTTTGATGCAATGTT+TGG + Chr6:55531755-55531774 MsG0680033050.01.T01:intron 30.0%
AAATAATAGAGGGAAGGGTA+AGG + Chr6:55530419-55530438 MsG0680033050.01.T01:CDS 35.0%
AAGCTTGTGTTAGAGATTCT+TGG + Chr6:55531628-55531647 MsG0680033050.01.T01:intron 35.0%
AATGCCCAAATTTGATTCCA+AGG - Chr6:55532124-55532143 None:intergenic 35.0%
ACCTTGGGTAATCATAATTG+TGG + Chr6:55531962-55531981 MsG0680033050.01.T01:intron 35.0%
AGAAATGTTTGGACAAACCT+TGG + Chr6:55532104-55532123 MsG0680033050.01.T01:CDS 35.0%
CCATCTCACAAAAATATTCG+AGG + Chr6:55530853-55530872 MsG0680033050.01.T01:CDS 35.0%
GCTATGAATGCATCACTATT+GGG - Chr6:55531033-55531052 None:intergenic 35.0%
GCTTATCTCACAAACCTTAA+TGG - Chr6:55531454-55531473 None:intergenic 35.0%
TCCACAATTATGATTACCCA+AGG - Chr6:55531966-55531985 None:intergenic 35.0%
TGCTATGAATGCATCACTAT+TGG - Chr6:55531034-55531053 None:intergenic 35.0%
TGGAATCAAATTTGGGCATT+GGG + Chr6:55532124-55532143 MsG0680033050.01.T01:CDS 35.0%
TTCAGTTGCAAAGACTTACA+CGG + Chr6:55530704-55530723 MsG0680033050.01.T01:CDS 35.0%
TTGGAATCAAATTTGGGCAT+TGG + Chr6:55532123-55532142 MsG0680033050.01.T01:CDS 35.0%
TTTGAGAAGAGAAGAGATAG+AGG + Chr6:55531540-55531559 MsG0680033050.01.T01:intron 35.0%
! GAGCAAGAAAGTGAAAGTTT+TGG + Chr6:55530985-55531004 MsG0680033050.01.T01:CDS 35.0%
!! CCTCGAATATTTTTGTGAGA+TGG - Chr6:55530856-55530875 None:intergenic 35.0%
!! GAGTTCTAAACCACTTCATT+CGG - Chr6:55530632-55530651 None:intergenic 35.0%
!! TTTGATCATTTTGATGGCAG+TGG + Chr6:55531254-55531273 MsG0680033050.01.T01:intron 35.0%
!!! AGTGAAAGTTTTGGAATGGA+AGG + Chr6:55530994-55531013 MsG0680033050.01.T01:CDS 35.0%
!!! GTGAAAGTTTTGGAATGGAA+GGG + Chr6:55530995-55531014 MsG0680033050.01.T01:CDS 35.0%
AAATCGGGCTATTACAGGTT+AGG - Chr6:55531093-55531112 None:intergenic 40.0%
ACAAAGATGGCTATGTAGCT+TGG + Chr6:55530442-55530461 MsG0680033050.01.T01:CDS 40.0%
ACGTTTATGCGTAACAACTC+TGG + Chr6:55530669-55530688 MsG0680033050.01.T01:CDS 40.0%
AGAGGGAAGAACAAGAACAA+GGG + Chr6:55531565-55531584 MsG0680033050.01.T01:intron 40.0%
AGAGGGTTACATGATGCTAA+TGG + Chr6:55530516-55530535 MsG0680033050.01.T01:CDS 40.0%
ATCCCAACCAAAAATGCACA+CGG - Chr6:55531181-55531200 None:intergenic 40.0%
ATTACTTGAGCCGAATGAAG+TGG + Chr6:55530619-55530638 MsG0680033050.01.T01:CDS 40.0%
CGCAGAATTCGATGTTAGAA+GGG + Chr6:55531202-55531221 MsG0680033050.01.T01:intron 40.0%
GAGGGTTACATGATGCTAAT+GGG + Chr6:55530517-55530536 MsG0680033050.01.T01:CDS 40.0%
TAACACTAACGGTCACTTAG+CGG - Chr6:55531372-55531391 None:intergenic 40.0%
TACGGTGGTTCATAGTTATC+TGG - Chr6:55531057-55531076 None:intergenic 40.0%
TACTACACCCTCTAGTAACT+TGG - Chr6:55531336-55531355 None:intergenic 40.0%
TAGAGGGAAGAACAAGAACA+AGG + Chr6:55531564-55531583 MsG0680033050.01.T01:intron 40.0%
TCGAAAAATCGGGCTATTAC+AGG - Chr6:55531098-55531117 None:intergenic 40.0%
TCGCAGAATTCGATGTTAGA+AGG + Chr6:55531201-55531220 MsG0680033050.01.T01:intron 40.0%
TTCTATAGCATTAGACGCTG+AGG + Chr6:55530942-55530961 MsG0680033050.01.T01:CDS 40.0%
TTGAAGATTCTTGTTGGAGG+TGG + Chr6:55530901-55530920 MsG0680033050.01.T01:CDS 40.0%
! GGAATCAAATTTGGGCATTG+GGG + Chr6:55532125-55532144 MsG0680033050.01.T01:CDS 40.0%
! TATTACAGGTTAGGTGATGG+AGG - Chr6:55531084-55531103 None:intergenic 40.0%
! TGAGTTGTTGTTCCTCTTGA+TGG + Chr6:55530482-55530501 MsG0680033050.01.T01:CDS 40.0%
!! ATGCGTAACAACTCTGGTTT+TGG + Chr6:55530675-55530694 MsG0680033050.01.T01:CDS 40.0%
!! GAAATGGGTTAGACCCATTA+AGG + Chr6:55531437-55531456 MsG0680033050.01.T01:intron 40.0%
!! TCACTTTTGGTATTGAGCTG+AGG - Chr6:55530579-55530598 None:intergenic 40.0%
!! TTAGAGATTCTTGGTGCTAG+AGG + Chr6:55531637-55531656 MsG0680033050.01.T01:intron 40.0%
!! TTTTGGTATTGAGCTGAGGA+AGG - Chr6:55530575-55530594 None:intergenic 40.0%
ACACGGCTACTGAAGAAGTA+TGG + Chr6:55530721-55530740 MsG0680033050.01.T01:CDS 45.0%
AGAACAAGAACAAGGGCTAG+AGG + Chr6:55531572-55531591 MsG0680033050.01.T01:intron 45.0%
AGAGAAGAGATAGAGGCTAG+AGG + Chr6:55531547-55531566 MsG0680033050.01.T01:intron 45.0%
CAAGAGGGGATTCATCATCT+AGG + Chr6:55531595-55531614 MsG0680033050.01.T01:intron 45.0%
GAGAAGAGATAGAGGCTAGA+GGG + Chr6:55531548-55531567 MsG0680033050.01.T01:intron 45.0%
GGCTATTACAGGTTAGGTGA+TGG - Chr6:55531087-55531106 None:intergenic 45.0%
! GGAGTCAAAATGGGGTTTTG+GGG + Chr6:55532146-55532165 MsG0680033050.01.T01:CDS 45.0%
! GGGAGTCAAAATGGGGTTTT+GGG + Chr6:55532145-55532164 MsG0680033050.01.T01:CDS 45.0%
! TTTGCCTCCGTGTGCATTTT+TGG + Chr6:55531171-55531190 MsG0680033050.01.T01:intron 45.0%
!! TCTTGGTGCTAGAGGTAAGA+GGG + Chr6:55531645-55531664 MsG0680033050.01.T01:intron 45.0%
!! TTAGGTGATGGAGGTTGGTA+CGG - Chr6:55531075-55531094 None:intergenic 45.0%
!! TTCTTGGTGCTAGAGGTAAG+AGG + Chr6:55531644-55531663 MsG0680033050.01.T01:intron 45.0%
!!! ATGGGGTTTTGGGGTGAAAA+TGG + Chr6:55532155-55532174 MsG0680033050.01.T01:CDS 45.0%
!!! CTCCGTGTGCATTTTTGGTT+GGG + Chr6:55531176-55531195 MsG0680033050.01.T01:intron 45.0%
AACAAGGGCTAGAGGCAAGA+GGG + Chr6:55531580-55531599 MsG0680033050.01.T01:intron 50.0%
CCAACCAAAAATGCACACGG+AGG - Chr6:55531178-55531197 None:intergenic 50.0%
CGAGTTGTGACAGTAGTGTC+GGG - Chr6:55532189-55532208 None:intergenic 50.0%
GCGAGTTGTGACAGTAGTGT+CGG - Chr6:55532190-55532209 None:intergenic 50.0%
GGGAAGGGTAAGGACAAAGA+TGG + Chr6:55530429-55530448 MsG0680033050.01.T01:CDS 50.0%
! GGCATTGGGGAGTCAAAATG+GGG + Chr6:55532138-55532157 MsG0680033050.01.T01:CDS 50.0%
! GGGGAGTCAAAATGGGGTTT+TGG + Chr6:55532144-55532163 MsG0680033050.01.T01:CDS 50.0%
!! ACAGGTTAGGTGATGGAGGT+TGG - Chr6:55531080-55531099 None:intergenic 50.0%
!! GGGCATTGGGGAGTCAAAAT+GGG + Chr6:55532137-55532156 MsG0680033050.01.T01:CDS 50.0%
!! TGGGCATTGGGGAGTCAAAA+TGG + Chr6:55532136-55532155 MsG0680033050.01.T01:CDS 50.0%
!!! CCTCCGTGTGCATTTTTGGT+TGG + Chr6:55531175-55531194 MsG0680033050.01.T01:intron 50.0%
ACAAGGGCTAGAGGCAAGAG+GGG + Chr6:55531581-55531600 MsG0680033050.01.T01:intron 55.0%
GAACAAGGGCTAGAGGCAAG+AGG + Chr6:55531579-55531598 MsG0680033050.01.T01:intron 55.0%
GCCATTGCGAGTTAGCTCCA+GGG - Chr6:55532256-55532275 None:intergenic 55.0%
TCCCTGGAGCTAACTCGCAA+TGG + Chr6:55532252-55532271 MsG0680033050.01.T01:CDS 55.0%
TGCCATTGCGAGTTAGCTCC+AGG - Chr6:55532257-55532276 None:intergenic 55.0%
CCAACTCGCCATTGCGAGCA+CGG - Chr6:55532215-55532234 None:intergenic 60.0%
GAGTTGGATGCGAGCAGCAG+GGG + Chr6:55532228-55532247 MsG0680033050.01.T01:CDS 60.0%
! CGAGTTGGATGCGAGCAGCA+GGG + Chr6:55532227-55532246 MsG0680033050.01.T01:CDS 60.0%
!! GGTGATGGAGGTTGGTACGG+TGG - Chr6:55531072-55531091 None:intergenic 60.0%
ACTCGCCACCGTGCTCGCAA+TGG + Chr6:55532204-55532223 MsG0680033050.01.T01:CDS 65.0%
ACTCGCCATTGCGAGCACGG+TGG - Chr6:55532212-55532231 None:intergenic 65.0%
CCGTGCTCGCAATGGCGAGT+TGG + Chr6:55532212-55532231 MsG0680033050.01.T01:CDS 65.0%
! GCGAGTTGGATGCGAGCAGC+AGG + Chr6:55532226-55532245 MsG0680033050.01.T01:CDS 65.0%
TGCGAGCAGCAGGGGCTCCC+TGG + Chr6:55532236-55532255 MsG0680033050.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 55530399 55532281 55530399 ID=MsG0680033050.01;Name=MsG0680033050.01
Chr6 mRNA 55530399 55532281 55530399 ID=MsG0680033050.01.T01;Parent=MsG0680033050.01;Name=MsG0680033050.01.T01;_AED=0.16;_eAED=0.16;_QI=0|0|0|0.66|1|1|3|0|278
Chr6 exon 55530399 55530758 55530399 ID=MsG0680033050.01.T01:exon:8935;Parent=MsG0680033050.01.T01
Chr6 exon 55530847 55531097 55530847 ID=MsG0680033050.01.T01:exon:8934;Parent=MsG0680033050.01.T01
Chr6 exon 55532056 55532281 55532056 ID=MsG0680033050.01.T01:exon:8933;Parent=MsG0680033050.01.T01
Chr6 CDS 55530399 55530758 55530399 ID=MsG0680033050.01.T01:cds;Parent=MsG0680033050.01.T01
Chr6 CDS 55530847 55531097 55530847 ID=MsG0680033050.01.T01:cds;Parent=MsG0680033050.01.T01
Chr6 CDS 55532056 55532281 55532056 ID=MsG0680033050.01.T01:cds;Parent=MsG0680033050.01.T01
Gene Sequence

>MsG0680033050.01.T01

ATGGGGGATTCACAACAAGAAAATAATAGAGGGAAGGGTAAGGACAAAGATGGCTATGTAGCTTGGATCATAGAAGAAACTAATGAGTTGTTGTTCCTCTTGATGGATGCTATAAATAGAGGGTTACATGATGCTAATGGGTCACTTAGTAAACAAAATGTAGAGCGAGTTATCCTTCCTCAGCTCAATACCAAAAGTGAATCACAAAAAACTTATAATCATTACTTGAGCCGAATGAAGTGGTTTAGAACTCAATACAACAAGATGACAACGTTTATGCGTAACAACTCTGGTTTTGGATGCGATTCAGTTGCAAAGACTTACACGGCTACTGAAGAAGTATGGAGTAATTACTTAAAGTCCCATCCATCTCACAAAAATATTCGAGGAAAAAGTATGATTGATTATGATTATTTGAAGATTCTTGTTGGAGGTGGAGTGTCTAGCGAGAATAGTTCTATAGCATTAGACGCTGAGGATACTGATGCAACAACTTTTGAGCAAGAAAGTGAAAGTTTTGGAATGGAAGGGTTTTCATATGATCCCAATAGTGATGCATTCATAGCACCAGATAACTATGAACCACCGTACCAACCTCCATCACCTAACCTGTTGTTTTGGTGCAAATTTTATATGGATTTGTGTGTCTTTTCATGTTTAGAAATGTTTGGACAAACCTTGGAATCAAATTTGGGCATTGGGGAGTCAAAATGGGGTTTTGGGGTGAAAATGGCTCTTTTTCCCGACACTACTGTCACAACTCGCCACCGTGCTCGCAATGGCGAGTTGGATGCGAGCAGCAGGGGCTCCCTGGAGCTAACTCGCAATGGCAAGTAA
Protein sequence

>MsG0680033050.01.T01

MGDSQQENNRGKGKDKDGYVAWIIEETNELLFLLMDAINRGLHDANGSLSKQNVERVILPQLNTKSESQKTYNHYLSRMKWFRTQYNKMTTFMRNNSGFGCDSVAKTYTATEEVWSNYLKSHPSHKNIRGKSMIDYDYLKILVGGGVSSENSSIALDAEDTDATTFEQESESFGMEGFSYDPNSDAFIAPDNYEPPYQPPSPNLLFWCKFYMDLCVFSCLEMFGQTLESNLGIGESKWGFGVKMALFPDTTVTTRHRARNGELDASSRGSLELTRNGK*