AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033643.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033643.01.T01 MTR_3g091270 46.569 408 129 7 117 437 89 494 1.01e-114 348
MsG0680033643.01.T01 MTR_4g077910 65.217 253 39 2 235 438 605 857 6.97e-106 341
MsG0680033643.01.T01 MTR_4g077910 53.279 244 76 3 19 231 259 495 2.51e-62 221
MsG0680033643.01.T01 MTR_4g077910 84.810 79 11 1 431 508 976 1054 1.87e-35 141
MsG0680033643.01.T01 MTR_7g116230 64.050 242 42 1 235 431 426 667 2.90e-100 321
MsG0680033643.01.T01 MTR_7g116230 52.362 254 80 5 23 242 119 365 2.31e-62 219
MsG0680033643.01.T01 MTR_7g116230 67.143 70 11 2 431 499 741 799 3.06e-19 91.7
MsG0680033643.01.T01 MTR_5g029190 52.848 316 90 7 216 473 562 876 4.22e-97 317
MsG0680033643.01.T01 MTR_5g029190 43.952 248 85 4 23 231 242 474 1.10e-50 187
MsG0680033643.01.T01 MTR_5g029190 68.421 95 29 1 415 508 939 1033 5.76e-33 134
MsG0680033643.01.T01 MTR_2g438220 49.682 314 104 6 213 473 467 779 1.08e-92 304
MsG0680033643.01.T01 MTR_2g438220 40.161 249 95 4 24 233 150 383 2.01e-46 174
MsG0680033643.01.T01 MTR_2g438220 74.684 79 19 1 431 508 858 936 4.75e-29 122
MsG0680033643.01.T01 MTR_1g039445 50.645 310 103 7 213 473 550 858 2.37e-90 299
MsG0680033643.01.T01 MTR_1g039445 44.628 242 80 7 29 231 241 467 3.72e-46 173
MsG0680033643.01.T01 MTR_1g039445 79.747 79 15 1 431 508 937 1015 1.58e-32 132
MsG0680033643.01.T01 MTR_1g039480 47.531 324 106 7 213 473 564 886 3.77e-87 290
MsG0680033643.01.T01 MTR_1g039480 35.988 339 146 10 29 318 255 571 1.97e-44 168
MsG0680033643.01.T01 MTR_1g039480 74.684 79 19 1 431 508 965 1043 2.51e-31 129
MsG0680033643.01.T01 MTR_4g130510 38.841 466 156 13 135 473 327 790 1.13e-86 285
MsG0680033643.01.T01 MTR_4g130510 35.079 573 225 16 32 473 234 790 2.76e-85 284
MsG0680033643.01.T01 MTR_4g130510 58.974 78 30 1 431 508 872 947 8.43e-25 109
MsG0680033643.01.T01 MTR_1g069605 34.935 541 226 12 14 438 76 606 1.47e-84 280
MsG0680033643.01.T01 MTR_1g069605 53.846 78 33 2 431 508 727 801 9.93e-19 90.1
MsG0680033643.01.T01 MTR_7g109200 47.059 323 108 7 213 473 603 924 1.21e-83 281
MsG0680033643.01.T01 MTR_7g109200 42.169 249 100 7 17 231 281 519 2.93e-41 159
MsG0680033643.01.T01 MTR_7g109200 75.000 80 18 1 431 508 1003 1082 2.25e-31 129
MsG0680033643.01.T01 MTR_8g086600 36.943 471 143 13 108 441 250 703 7.05e-81 271
MsG0680033643.01.T01 MTR_8g086600 50.000 88 42 1 421 508 813 898 1.77e-22 102
MsG0680033643.01.T01 MTR_3g007770 34.501 571 203 16 18 438 209 758 1.55e-80 271
MsG0680033643.01.T01 MTR_3g007770 45.000 80 42 1 431 508 879 958 1.05e-15 80.9
MsG0680033643.01.T01 MTR_8g063270 34.676 571 244 20 19 473 174 731 1.44e-79 268
MsG0680033643.01.T01 MTR_8g063270 45.349 86 45 2 424 508 806 890 3.94e-17 85.5
MsG0680033643.01.T01 MTR_2g016630 36.797 462 159 12 108 441 235 691 2.75e-79 267
MsG0680033643.01.T01 MTR_2g016630 37.857 140 76 2 369 508 758 886 3.11e-22 101
MsG0680033643.01.T01 MTR_4g130510 39.356 404 123 10 135 418 327 728 7.43e-77 256
MsG0680033643.01.T01 MTR_8g063270 35.805 472 186 14 114 473 60 526 7.99e-76 254
MsG0680033643.01.T01 MTR_8g063270 45.349 86 45 2 424 508 601 685 4.85e-17 84.7
MsG0680033643.01.T01 MTR_8g037260 39.048 420 146 10 32 358 254 656 1.21e-73 252
MsG0680033643.01.T01 MTR_8g037260 58.974 78 31 1 431 508 911 987 2.53e-24 107
MsG0680033643.01.T01 MTR_8g037260 39.394 99 48 4 342 438 702 790 9.79e-11 65.1
MsG0680033643.01.T01 MTR_8g092590 38.534 423 158 12 17 350 256 665 2.52e-73 252
MsG0680033643.01.T01 MTR_8g092590 55.844 77 32 1 432 508 931 1005 7.79e-23 103
MsG0680033643.01.T01 MTR_8g092590 65.957 47 14 1 394 438 763 809 5.14e-12 68.9
MsG0680033643.01.T01 MTR_3g030040 38.849 417 157 9 15 344 236 641 9.29e-73 250
MsG0680033643.01.T01 MTR_3g030040 58.974 78 31 1 431 508 911 987 9.35e-24 105
MsG0680033643.01.T01 MTR_3g107520 42.587 317 93 7 133 361 355 670 7.24e-70 242
MsG0680033643.01.T01 MTR_3g107520 63.529 85 30 1 424 508 912 995 3.04e-27 116
MsG0680033643.01.T01 MTR_3g107520 54.717 53 22 1 388 438 746 798 4.35e-11 66.2
MsG0680033643.01.T01 MTR_7g106680 37.923 414 161 8 15 342 194 597 2.91e-69 239
MsG0680033643.01.T01 MTR_7g106680 52.564 78 36 1 431 508 865 941 3.84e-21 97.8
MsG0680033643.01.T01 MTR_1g098550 43.046 302 87 7 134 350 366 667 4.27e-68 237
MsG0680033643.01.T01 MTR_1g098550 59.375 64 24 1 432 495 932 993 1.39e-18 90.1
MsG0680033643.01.T01 MTR_1g098550 65.957 47 14 1 394 438 764 810 1.13e-11 68.2
MsG0680033643.01.T01 MTR_1g098550 43.046 302 87 7 134 350 362 663 4.47e-68 237
MsG0680033643.01.T01 MTR_1g098550 59.375 64 24 1 432 495 928 989 1.38e-18 90.1
MsG0680033643.01.T01 MTR_1g098550 65.957 47 14 1 394 438 760 806 1.14e-11 68.2
MsG0680033643.01.T01 MTR_4g130510 44.161 274 110 8 242 473 552 824 1.95e-58 209
MsG0680033643.01.T01 MTR_4g130510 58.974 78 30 1 431 508 906 981 7.91e-25 109
MsG0680033643.01.T01 MTR_4g130510 31.416 226 108 4 32 224 234 445 1.10e-20 96.7
MsG0680033643.01.T01 MTR_2g087900 30.808 396 182 8 133 442 92 481 2.31e-51 184
MsG0680033643.01.T01 MTR_2g087900 30.808 396 182 8 133 442 92 481 1.08e-50 185
MsG0680033643.01.T01 MTR_2g035780 62.205 127 46 2 235 360 482 607 1.08e-46 175
MsG0680033643.01.T01 MTR_2g035780 56.410 78 32 1 431 508 878 953 1.69e-23 105
MsG0680033643.01.T01 MTR_2g087980 28.831 385 194 7 134 442 87 467 1.97e-43 164
MsG0680033643.01.T01 MTR_2g087960 28.753 393 191 10 132 442 92 477 2.00e-43 162
MsG0680033643.01.T01 MTR_2g087960 28.753 393 191 10 132 442 92 477 6.43e-43 162
MsG0680033643.01.T01 MTR_2g087900 28.967 397 188 9 133 441 92 482 1.38e-42 158
MsG0680033643.01.T01 MTR_2g087950 29.825 399 180 9 132 442 87 473 9.38e-42 159
MsG0680033643.01.T01 MTR_1g073740 29.243 383 184 8 126 435 91 459 2.58e-40 155
MsG0680033643.01.T01 MTR_3g060280 28.500 400 174 9 121 436 88 459 1.99e-39 151
MsG0680033643.01.T01 MTR_3g060280 28.500 400 174 9 121 436 88 459 2.27e-39 151
MsG0680033643.01.T01 MTR_3g060280 28.500 400 174 9 121 436 88 459 3.74e-39 152
MsG0680033643.01.T01 MTR_4g088225 28.021 389 191 10 126 438 90 465 2.38e-37 146
MsG0680033643.01.T01 MTR_4g088225 28.021 389 191 10 126 438 90 465 2.83e-37 146
MsG0680033643.01.T01 MTR_2g037830 28.457 376 196 9 127 438 78 444 7.18e-36 140
MsG0680033643.01.T01 MTR_2g037830 28.457 376 196 9 127 438 78 444 1.69e-35 140
MsG0680033643.01.T01 MTR_3g060280 28.272 382 162 9 121 418 88 441 3.30e-35 137
MsG0680033643.01.T01 MTR_3g450800 28.723 376 186 12 131 438 34 395 1.29e-34 138
MsG0680033643.01.T01 MTR_3g005560 28.108 370 189 11 135 438 86 444 3.22e-34 136
MsG0680033643.01.T01 MTR_3g005560 28.108 370 189 11 135 438 86 444 6.89e-34 136
MsG0680033643.01.T01 MTR_0011s0020 27.371 369 193 10 135 438 86 444 5.17e-33 133
MsG0680033643.01.T01 MTR_2g087900 31.746 252 96 6 133 308 92 343 1.55e-31 125
MsG0680033643.01.T01 MTR_3g005560 28.116 345 173 10 135 415 86 419 3.62e-30 122
MsG0680033643.01.T01 MTR_3g060240 25.369 406 182 14 121 435 78 453 3.51e-29 122
MsG0680033643.01.T01 MTR_3g060220 33.182 220 108 8 226 435 263 453 1.87e-28 120
MsG0680033643.01.T01 MTR_3g060220 43.750 80 42 1 121 197 78 157 1.19e-13 73.9
MsG0680033643.01.T01 MTR_3g060220 33.182 220 108 8 226 435 262 452 1.99e-28 120
MsG0680033643.01.T01 MTR_3g060220 44.304 79 42 1 121 197 78 156 3.04e-14 75.9
MsG0680033643.01.T01 MTR_0019s0090 44.667 150 23 5 1 150 1 90 1.29e-25 101
MsG0680033643.01.T01 MTR_4g050000 30.493 223 131 6 233 442 258 469 1.33e-25 111
MsG0680033643.01.T01 MTR_4g050000 50.769 65 32 0 133 197 88 152 1.56e-13 73.6
MsG0680033643.01.T01 MTR_2g087900 39.669 121 69 2 133 249 92 212 9.38e-18 84.0
MsG0680033643.01.T01 MTR_0049s0090 47.436 78 40 1 431 508 221 297 5.44e-16 79.7
MsG0680033643.01.T01 MTR_8g043560 47.436 78 24 1 431 508 317 377 1.39e-15 79.3
MsG0680033643.01.T01 MTR_7g033550 51.562 64 24 1 87 150 97 153 1.03e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033643.01.T01 AT3G03050 62.846 253 45 2 235 438 608 860 1.42e-101 330
MsG0680033643.01.T01 AT3G03050 49.587 242 80 6 23 231 268 500 7.74e-56 202
MsG0680033643.01.T01 AT3G03050 84.810 79 11 1 431 508 979 1057 1.00e-35 142
MsG0680033643.01.T01 AT5G16910 62.400 250 48 2 235 438 611 860 1.15e-99 325
MsG0680033643.01.T01 AT5G16910 50.209 239 77 6 26 231 274 503 3.59e-54 197
MsG0680033643.01.T01 AT5G16910 82.278 79 13 1 431 508 979 1057 7.38e-35 140
MsG0680033643.01.T01 AT2G33100 49.844 321 100 6 213 473 474 793 9.66e-95 310
MsG0680033643.01.T01 AT2G33100 38.846 260 105 4 11 231 145 389 8.48e-46 172
MsG0680033643.01.T01 AT2G33100 77.215 79 17 1 431 508 872 950 3.82e-30 125
MsG0680033643.01.T01 AT2G33100 49.844 321 100 6 213 473 474 793 9.66e-95 310
MsG0680033643.01.T01 AT2G33100 38.846 260 105 4 11 231 145 389 8.48e-46 172
MsG0680033643.01.T01 AT2G33100 77.215 79 17 1 431 508 872 950 3.82e-30 125
MsG0680033643.01.T01 AT4G38190 50.305 328 117 8 191 473 535 861 9.41e-93 305
MsG0680033643.01.T01 AT4G38190 43.933 239 86 5 29 231 252 478 2.72e-48 180
MsG0680033643.01.T01 AT4G38190 72.152 79 21 1 431 508 940 1018 1.80e-29 123
MsG0680033643.01.T01 AT2G21770 35.149 569 210 17 13 438 248 800 9.58e-86 286
MsG0680033643.01.T01 AT2G21770 55.263 76 32 1 433 508 923 996 5.52e-22 100
MsG0680033643.01.T01 AT4G32410 35.818 550 193 16 33 438 259 792 7.74e-85 283
MsG0680033643.01.T01 AT4G32410 64.103 78 27 1 431 508 913 989 1.40e-26 114
MsG0680033643.01.T01 AT5G05170 34.851 571 208 17 15 438 224 777 1.25e-84 283
MsG0680033643.01.T01 AT5G05170 60.256 78 30 1 431 508 898 974 8.72e-25 109
MsG0680033643.01.T01 AT5G64740 35.387 568 209 19 15 438 244 797 9.68e-84 280
MsG0680033643.01.T01 AT5G64740 56.579 76 31 1 433 508 920 993 5.37e-23 103
MsG0680033643.01.T01 AT2G25540 37.753 445 137 11 133 438 329 772 1.46e-83 280
MsG0680033643.01.T01 AT2G25540 66.667 78 25 1 431 508 893 969 4.22e-26 113
MsG0680033643.01.T01 AT1G32180 49.677 310 99 8 220 473 427 735 7.30e-83 276
MsG0680033643.01.T01 AT1G32180 53.205 156 44 1 105 231 173 328 3.14e-41 159
MsG0680033643.01.T01 AT1G32180 75.309 81 17 1 431 508 814 894 5.48e-32 131
MsG0680033643.01.T01 AT1G32180 49.677 310 99 8 220 473 427 735 7.30e-83 276
MsG0680033643.01.T01 AT1G32180 53.205 156 44 1 105 231 173 328 3.14e-41 159
MsG0680033643.01.T01 AT1G32180 75.309 81 17 1 431 508 814 894 5.48e-32 131
MsG0680033643.01.T01 AT5G17420 34.766 535 216 12 26 438 215 738 1.31e-82 276
MsG0680033643.01.T01 AT5G17420 60.256 78 29 1 431 508 860 935 9.78e-25 108
MsG0680033643.01.T01 AT4G18780 37.234 470 144 14 108 438 238 695 1.88e-80 270
MsG0680033643.01.T01 AT4G18780 39.286 140 74 2 369 508 764 892 6.68e-23 103
MsG0680033643.01.T01 AT5G09870 37.825 423 160 12 18 352 235 642 2.74e-72 248
MsG0680033643.01.T01 AT5G09870 56.579 76 31 1 433 508 905 978 6.67e-23 103
MsG0680033643.01.T01 AT5G09870 63.830 47 15 1 394 438 736 782 1.34e-11 67.8
MsG0680033643.01.T01 AT1G02730 46.844 301 98 7 235 473 636 936 5.50e-72 248
MsG0680033643.01.T01 AT1G02730 44.082 245 95 6 20 231 289 524 1.92e-41 159
MsG0680033643.01.T01 AT1G02730 73.750 80 19 1 431 508 1015 1094 3.60e-31 129
MsG0680033643.01.T01 AT5G44030 42.540 315 93 7 132 360 9 321 2.13e-70 239
MsG0680033643.01.T01 AT5G44030 56.410 78 34 0 431 508 602 679 3.28e-23 103
MsG0680033643.01.T01 AT5G44030 49.231 65 25 2 376 438 423 481 7.21e-11 65.5
MsG0680033643.01.T01 AT4G39350 37.931 406 153 11 26 344 254 647 5.28e-70 242
MsG0680033643.01.T01 AT4G39350 54.054 74 32 1 432 505 918 989 1.55e-20 96.3
MsG0680033643.01.T01 AT4G39350 55.556 54 22 1 387 438 743 796 1.80e-11 67.4
MsG0680033643.01.T01 AT5G44030 37.831 415 160 9 32 360 198 600 5.35e-69 239
MsG0680033643.01.T01 AT5G44030 56.410 78 34 0 431 508 881 958 3.23e-23 104
MsG0680033643.01.T01 AT5G44030 49.231 65 25 2 376 438 702 760 8.70e-11 65.1
MsG0680033643.01.T01 AT5G44030 37.831 415 160 9 32 360 227 629 7.31e-69 239
MsG0680033643.01.T01 AT5G44030 56.410 78 34 0 431 508 910 987 3.37e-23 104
MsG0680033643.01.T01 AT5G44030 49.231 65 25 2 376 438 731 789 8.12e-11 65.5
MsG0680033643.01.T01 AT4G24000 30.287 383 162 11 134 438 94 449 1.77e-40 155
MsG0680033643.01.T01 AT2G32530 29.188 394 179 12 134 438 91 473 1.47e-36 144
MsG0680033643.01.T01 AT4G15290 27.766 461 215 17 123 480 74 519 2.31e-35 140
MsG0680033643.01.T01 AT4G24010 26.419 458 213 15 78 438 29 459 6.79e-28 118
MsG0680033643.01.T01 AT4G24000 33.898 236 119 10 210 438 52 257 8.76e-27 114
MsG0680033643.01.T01 AT2G32620 29.167 264 144 7 240 478 273 518 5.55e-25 108
MsG0680033643.01.T01 AT2G32620 41.000 100 58 1 103 201 59 158 3.25e-15 78.6
MsG0680033643.01.T01 AT4G23990 29.762 252 142 7 195 438 254 478 9.13e-25 108
MsG0680033643.01.T01 AT4G23990 50.000 64 32 0 134 197 116 179 1.43e-12 70.9
MsG0680033643.01.T01 AT4G23990 29.762 252 142 7 195 438 40 264 9.32e-25 108
MsG0680033643.01.T01 AT1G55850 32.579 221 109 7 221 436 266 451 1.53e-24 108
MsG0680033643.01.T01 AT1G55850 55.072 69 31 0 133 201 106 174 1.30e-14 77.0
MsG0680033643.01.T01 AT2G32620 29.388 245 130 8 218 438 152 377 3.68e-24 106
MsG0680033643.01.T01 AT2G32620 50.000 62 31 0 140 201 1 62 7.72e-12 68.2
MsG0680033643.01.T01 AT2G32620 29.388 245 130 8 218 438 248 473 4.32e-24 106
MsG0680033643.01.T01 AT2G32620 41.000 100 58 1 103 201 59 158 3.94e-15 79.0
MsG0680033643.01.T01 AT2G32620 30.594 219 114 6 240 438 273 473 6.41e-24 105
MsG0680033643.01.T01 AT2G32620 41.000 100 58 1 103 201 59 158 2.21e-15 79.3
MsG0680033643.01.T01 AT2G32540 30.201 298 157 13 170 438 198 473 1.44e-22 102
MsG0680033643.01.T01 AT2G32540 43.529 85 48 0 134 218 91 175 2.24e-15 79.7
MsG0680033643.01.T01 AT4G15320 31.905 210 122 7 240 438 273 472 2.06e-22 101
MsG0680033643.01.T01 AT4G15320 39.604 101 55 1 123 217 74 174 1.97e-15 79.7
MsG0680033643.01.T01 AT4G15320 31.905 210 122 7 240 438 273 472 2.11e-22 101
MsG0680033643.01.T01 AT4G15320 39.604 101 55 1 123 217 74 174 1.95e-15 79.7
MsG0680033643.01.T01 AT4G15320 31.905 210 122 7 240 438 288 487 2.26e-22 101
MsG0680033643.01.T01 AT4G15320 39.604 101 55 1 123 217 74 174 1.88e-15 79.7
MsG0680033643.01.T01 AT2G32610 28.879 232 148 7 218 438 249 474 3.37e-22 100
MsG0680033643.01.T01 AT2G32610 46.835 79 41 1 124 201 80 158 1.53e-14 77.0
MsG0680033643.01.T01 AT4G15320 30.732 205 121 7 245 438 324 518 2.76e-20 95.1
MsG0680033643.01.T01 AT4G15320 39.604 101 55 1 123 217 74 174 2.47e-15 79.7
MsG0680033643.01.T01 AT4G15320 30.732 205 121 7 245 438 367 561 2.87e-20 95.1
MsG0680033643.01.T01 AT4G15320 39.604 101 55 1 123 217 74 174 2.10e-15 79.7

Find 106 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGAAGAGTTTCACTTTA+TGG 0.072307 6:-70148092 MsG0680033643.01.T01:CDS
CATCTTGTTGCCGTGCTTCA+AGG 0.256642 6:-70147235 MsG0680033643.01.T01:CDS
CTACTATCATTCACTAAATC+AGG 0.273485 6:+70149070 None:intergenic
GTAAGGAATATTATTGATTC+TGG 0.279136 6:+70149015 None:intergenic
CCTTAAGTGTGTTCTCTTGT+TGG 0.282447 6:-70147760 MsG0680033643.01.T01:CDS
CAGAAGGATTGGTACCGATA+TGG 0.319260 6:+70149984 None:intergenic
TTCACCTTGACTTCGAAATC+TGG 0.323434 6:-70147178 MsG0680033643.01.T01:CDS
CACTTGCACTGTTCTTGCAT+TGG 0.350332 6:-70149512 MsG0680033643.01.T01:CDS
CCTGTAGGATTGTCAGGACT+TGG 0.358065 6:+70149388 None:intergenic
ATACCGATGCACTCTGGTTA+TGG 0.358640 6:-70149475 MsG0680033643.01.T01:CDS
CCTCAAACCTTTGAGGGAAC+TGG 0.365074 6:+70148225 None:intergenic
ACTTTCTATAGTAGTTGCTT+TGG 0.377956 6:-70148035 MsG0680033643.01.T01:CDS
CTTTCTATAGTAGTTGCTTT+GGG 0.393958 6:-70148034 MsG0680033643.01.T01:CDS
TTGCACTGTTCTTGCATTGG+AGG 0.397294 6:-70149509 MsG0680033643.01.T01:CDS
CGAGCCCTTGATGGACTTCA+AGG 0.401056 6:-70148143 MsG0680033643.01.T01:CDS
GGTGGAGAAATGAGCAGTTT+TGG 0.401803 6:-70147279 MsG0680033643.01.T01:CDS
GTTAACATGCGAGCCCTTGA+TGG 0.404189 6:-70148152 MsG0680033643.01.T01:CDS
ATAACCAGTGAGCACATCTT+TGG 0.406630 6:+70147682 None:intergenic
ACAAGAGATGGTTCTTTCTC+AGG 0.409534 6:+70149319 None:intergenic
AAACACCATTCTGTCAATTC+TGG 0.444618 6:-70149290 MsG0680033643.01.T01:CDS
ATTTAGTGAATGATAGTAGA+AGG 0.459761 6:-70149066 MsG0680033643.01.T01:CDS
TGCACTGTTCTTGCATTGGA+GGG 0.459768 6:-70149508 MsG0680033643.01.T01:CDS
CTGCTGTTCTGAGCCCATAT+CGG 0.460931 6:-70149998 MsG0680033643.01.T01:CDS
TCAATTCCCTCAAACCTTTG+AGG 0.461213 6:+70148218 None:intergenic
AGAAGGATTGGTACCGATAT+GGG 0.463715 6:+70149985 None:intergenic
TAAATGGTCAGGAATTCATC+TGG 0.464380 6:-70147308 MsG0680033643.01.T01:intron
CTGATCTTTATGTTGTCAAA+TGG 0.468924 6:-70147132 MsG0680033643.01.T01:CDS
TGTCTGCTCATCAACTTAGT+TGG 0.471029 6:+70150056 None:intergenic
CAATTCCCTCAAACCTTTGA+GGG 0.474627 6:+70148219 None:intergenic
GGGCCAGTCTATGTAGAATC+TGG 0.477755 6:-70148122 MsG0680033643.01.T01:CDS
TGAGATTTCAATGCCTGCTA+CGG 0.478771 6:+70147201 None:intergenic
TTCCTTACTCTCTCCGTGAC+AGG 0.479233 6:-70149000 MsG0680033643.01.T01:intron
GACCTGTCACGGAGAGAGTA+AGG 0.487247 6:+70148998 None:intergenic
GACGATTTGCTTACTTTGAA+AGG 0.489035 6:+70150110 None:intergenic
TACGACCACAACAAGAAAGC+TGG 0.490684 6:-70148400 MsG0680033643.01.T01:CDS
GGTTTACTCAAAGCCGTAGC+AGG 0.493025 6:-70147214 MsG0680033643.01.T01:CDS
CAGTTCCCTCAAAGGTTTGA+GGG 0.493044 6:-70148224 MsG0680033643.01.T01:CDS
GCATGAGTATAATGAGTTCA+AGG 0.494037 6:-70149038 MsG0680033643.01.T01:CDS
ATTGCCCAGCTTTCTTGTTG+TGG 0.494146 6:+70148395 None:intergenic
GCCTCGGCCATCATGTCAAA+TGG 0.499637 6:-70148356 MsG0680033643.01.T01:CDS
TTTACAATCATGATTGTGAT+CGG 0.501868 6:+70147091 None:intergenic
GTATGAGGACAAGACTGAAT+GGG 0.502171 6:-70147738 MsG0680033643.01.T01:CDS
CAGGAATTCATCTGGAAGAC+TGG 0.503919 6:-70147300 MsG0680033643.01.T01:CDS
TGCCGATCTAAATGTTCTGA+AGG 0.507008 6:-70149425 MsG0680033643.01.T01:CDS
CCAACAAGAGAACACACTTA+AGG 0.507706 6:+70147760 None:intergenic
CATACCTTCCCTCATTGCCT+TGG 0.515377 6:+70148289 None:intergenic
TTGTGATCGGCGGTATCATA+AGG 0.517338 6:+70147104 None:intergenic
GGTATGAGGACAAGACTGAA+TGG 0.524857 6:-70147739 MsG0680033643.01.T01:CDS
GCTATGTCCAGTTCCCTCAA+AGG 0.526209 6:-70148232 MsG0680033643.01.T01:CDS
GATCGGCAAGTGGCCTACCT+TGG 0.529590 6:+70147864 None:intergenic
CCTTGGAGTTGTATATATAG+TGG 0.530632 6:+70148306 None:intergenic
AAAAGCACCATTTGACATGA+TGG 0.531177 6:+70148349 None:intergenic
AAGCGTGTTGGATGGATCTA+CGG 0.533031 6:-70147713 MsG0680033643.01.T01:CDS
TTCCTTCAGAACATTTAGAT+CGG 0.534289 6:+70149423 None:intergenic
CTTGAAGCACGGCAACAAGA+TGG 0.534501 6:+70147236 None:intergenic
GGAAGGTATGTGCTTTATGA+TGG 0.535773 6:-70148276 MsG0680033643.01.T01:CDS
TAAATTTATCTGACCTGTCA+CGG 0.537310 6:+70148987 None:intergenic
TGTGTTCTCTTGTTGGTATG+AGG 0.542216 6:-70147753 MsG0680033643.01.T01:CDS
GAGACAAAGACGTCTATGCC+TGG 0.542298 6:+70149352 None:intergenic
TTGAAGCACGGCAACAAGAT+GGG 0.542423 6:+70147237 None:intergenic
ACAGGAAAATCTGATCTGCC+AGG 0.545594 6:-70149370 MsG0680033643.01.T01:CDS
GAATGCATTGGTCAGAGCCT+CGG 0.547524 6:-70148372 MsG0680033643.01.T01:CDS
GATGCATCAATATGCTTGCT+AGG 0.547632 6:+70147797 None:intergenic
CTGGCCCTTGAAGTCCATCA+AGG 0.551377 6:+70148138 None:intergenic
CAACCAGATTCTACATAGAC+TGG 0.560414 6:+70148119 None:intergenic
CTAGGTGTGATGAGAGCACC+AGG 0.561635 6:+70147815 None:intergenic
CCAGTTCCCTCAAAGGTTTG+AGG 0.567744 6:-70148225 MsG0680033643.01.T01:CDS
CCAAGTCCTGACAATCCTAC+AGG 0.569906 6:-70149388 MsG0680033643.01.T01:CDS
ATATATAGTGGTCGCAGTCA+AGG 0.570514 6:+70148318 None:intergenic
ATACAACTCCAAGGCAATGA+GGG 0.572491 6:-70148297 MsG0680033643.01.T01:CDS
ATTACCAAAGATGTGCTCAC+TGG 0.582404 6:-70147686 MsG0680033643.01.T01:intron
AGCTGCCAGAATTGACAGAA+TGG 0.582836 6:+70149285 None:intergenic
ACCACCAGATTTCGAAGTCA+AGG 0.587968 6:+70147174 None:intergenic
GTGTTTGCTGTGACAAGAGA+TGG 0.591399 6:+70149307 None:intergenic
ATTCCAGTGGCAGAGTTCCA+AGG 0.592139 6:-70147881 MsG0680033643.01.T01:intron
TGCTATGTTTCTGACGACGC+GGG 0.594783 6:-70149238 MsG0680033643.01.T01:CDS
AACTCCAAGGCAATGAGGGA+AGG 0.596165 6:-70148293 MsG0680033643.01.T01:CDS
ACGACCACAACAAGAAAGCT+GGG 0.599259 6:-70148399 MsG0680033643.01.T01:CDS
TATACAACTCCAAGGCAATG+AGG 0.600261 6:-70148298 MsG0680033643.01.T01:CDS
ACCTTGACTTCGAAATCTGG+TGG 0.601426 6:-70147175 MsG0680033643.01.T01:CDS
TGGCCCTTGAAGTCCATCAA+GGG 0.606839 6:+70148139 None:intergenic
GAATTCATCTGGAAGACTGG+TGG 0.608712 6:-70147297 MsG0680033643.01.T01:CDS
GTGATTAGCATATCTATCAG+AGG 0.610027 6:+70148193 None:intergenic
CAGTGGCAGAGTTCCAAGGT+AGG 0.611581 6:-70147877 MsG0680033643.01.T01:CDS
TTTGAGTAAACCTTGAAGCA+CGG 0.611817 6:+70147225 None:intergenic
TATGAGGACAAGACTGAATG+GGG 0.620391 6:-70147737 MsG0680033643.01.T01:CDS
CTAAGTTGATGAGCAGACAA+TGG 0.623020 6:-70150052 MsG0680033643.01.T01:CDS
ACCATTTGACATGATGGCCG+AGG 0.627963 6:+70148355 None:intergenic
TGATTAGCATATCTATCAGA+GGG 0.632288 6:+70148194 None:intergenic
AAGCTGGGCAATGAATGCAT+TGG 0.632692 6:-70148384 MsG0680033643.01.T01:CDS
GCTCCATAACCAGAGTGCAT+CGG 0.632830 6:+70149472 None:intergenic
TATGGGCTCAGAACAGCAGA+AGG 0.634420 6:+70150002 None:intergenic
CCACTATATATACAACTCCA+AGG 0.635755 6:-70148306 MsG0680033643.01.T01:CDS
GAGCCCTTGATGGACTTCAA+GGG 0.641804 6:-70148142 MsG0680033643.01.T01:CDS
ACAGAAGGGTGATCGGCAAG+TGG 0.646961 6:+70147854 None:intergenic
AGCAGAGGCGGTCACCACCA+CGG 0.650421 6:+70148252 None:intergenic
AACTACTATAGAAAGTTGTG+CGG 0.656093 6:+70148042 None:intergenic
GGAACTGGACATAGCAGAGG+CGG 0.657815 6:+70148240 None:intergenic
ACAATCATGATTGTGATCGG+CGG 0.664744 6:+70147094 None:intergenic
GTGTGATGAGAGCACCAGGA+CGG 0.673384 6:+70147819 None:intergenic
GAGGGAACTGGACATAGCAG+AGG 0.676027 6:+70148237 None:intergenic
TGCTTTATGATGGACCGTGG+TGG 0.683848 6:-70148266 MsG0680033643.01.T01:CDS
ATGCTATGTTTCTGACGACG+CGG 0.684403 6:-70149239 MsG0680033643.01.T01:CDS
TAGATATGCTAATCACAACA+CGG 0.730502 6:-70148186 MsG0680033643.01.T01:CDS
ATGAGGACAAGACTGAATGG+GGG 0.738835 6:-70147736 MsG0680033643.01.T01:CDS
ATGTGCTTTATGATGGACCG+TGG 0.739026 6:-70148269 MsG0680033643.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATCTAATTATAAACATA+TGG + Chr6:70147481-70147500 None:intergenic 15.0%
!! TAGAAGTTAAGTTTATTGTT+GGG - Chr6:70148609-70148628 MsG0680033643.01.T01:intron 20.0%
!! TGATAATAAAAAGAAGTGAA+AGG + Chr6:70149755-70149774 None:intergenic 20.0%
!! TTTGAAGAAATTTCATTCTT+GGG + Chr6:70149703-70149722 None:intergenic 20.0%
!!! TTTTATAATATCGAAGATCA+TGG + Chr6:70148426-70148445 None:intergenic 20.0%
! ACAACATATTGCATTCAAAT+AGG + Chr6:70147351-70147370 None:intergenic 25.0%
! AGAAGTTAAGTTTATTGTTG+GGG - Chr6:70148610-70148629 MsG0680033643.01.T01:intron 25.0%
! AGAGAATCAAGCATTAAATA+CGG - Chr6:70149229-70149248 MsG0680033643.01.T01:CDS 25.0%
! AGATAAATTTAATGCAAGAG+AGG - Chr6:70148234-70148253 MsG0680033643.01.T01:CDS 25.0%
! ATTTAGTGAATGATAGTAGA+AGG - Chr6:70148143-70148162 MsG0680033643.01.T01:CDS 25.0%
! CAAGAATGAAATTTCTTCAA+AGG - Chr6:70149702-70149721 MsG0680033643.01.T01:intron 25.0%
! GAACAATGAAAACTAACTTA+AGG - Chr6:70147448-70147467 MsG0680033643.01.T01:intron 25.0%
! GATAGGAATGAATAATTAAC+AGG - Chr6:70148634-70148653 MsG0680033643.01.T01:intron 25.0%
! GTAGAAGTTAAGTTTATTGT+TGG - Chr6:70148608-70148627 MsG0680033643.01.T01:intron 25.0%
! TAAAAAATTGCAGTCAAATG+CGG - Chr6:70148509-70148528 MsG0680033643.01.T01:intron 25.0%
! TAATGAAGCTGTAAAATCAA+AGG + Chr6:70147660-70147679 None:intergenic 25.0%
! TCTAGAAACATAAACAAGAA+GGG + Chr6:70148774-70148793 None:intergenic 25.0%
! TTGAAGAAATTTCATTCTTG+GGG + Chr6:70149702-70149721 None:intergenic 25.0%
! TTTACAATCATGATTGTGAT+CGG + Chr6:70150121-70150140 None:intergenic 25.0%
! TTTAGAAGAGTTTCACTTTA+TGG - Chr6:70149117-70149136 MsG0680033643.01.T01:intron 25.0%
!! AAATGATATTTTGCAGATGT+TGG - Chr6:70148661-70148680 MsG0680033643.01.T01:intron 25.0%
!! CTTTGAAGAAATTTCATTCT+TGG + Chr6:70149704-70149723 None:intergenic 25.0%
!!! GCTTCATTATTTTATTCGTA+TGG - Chr6:70147671-70147690 MsG0680033643.01.T01:intron 25.0%
!!! GTAAGGAATATTATTGATTC+TGG + Chr6:70148197-70148216 None:intergenic 25.0%
!!! TCATTATTTTATTCGTATGG+TGG - Chr6:70147674-70147693 MsG0680033643.01.T01:intron 25.0%
!!! TTTAAGTTGAAGTATGATTC+AGG + Chr6:70148091-70148110 None:intergenic 25.0%
AACTACTATAGAAAGTTGTG+CGG + Chr6:70149170-70149189 None:intergenic 30.0%
ACTTTCTATAGTAGTTGCTT+TGG - Chr6:70149174-70149193 MsG0680033643.01.T01:intron 30.0%
ATCAAAGGAAACATACAGAA+AGG + Chr6:70147645-70147664 None:intergenic 30.0%
CAAATATAGTGAAGCCAAAA+TGG + Chr6:70147327-70147346 None:intergenic 30.0%
CATAAGAAAAACAGAAGGAT+TGG + Chr6:70147239-70147258 None:intergenic 30.0%
CTACTATCATTCACTAAATC+AGG + Chr6:70148142-70148161 None:intergenic 30.0%
CTAGAAACATAAACAAGAAG+GGG + Chr6:70148773-70148792 None:intergenic 30.0%
CTGATCTTTATGTTGTCAAA+TGG - Chr6:70150077-70150096 MsG0680033643.01.T01:CDS 30.0%
GAGAATCAAGCATTAAATAC+GGG - Chr6:70149230-70149249 MsG0680033643.01.T01:CDS 30.0%
GTACTTGAATTATGACAGTA+TGG + Chr6:70148377-70148396 None:intergenic 30.0%
TAAAAAATTGCAGTCAAACG+CGG - Chr6:70148441-70148460 MsG0680033643.01.T01:intron 30.0%
TAAATTTATCTGACCTGTCA+CGG + Chr6:70148225-70148244 None:intergenic 30.0%
TAGATATGCTAATCACAACA+CGG - Chr6:70149023-70149042 MsG0680033643.01.T01:CDS 30.0%
TGATTAGCATATCTATCAGA+GGG + Chr6:70149018-70149037 None:intergenic 30.0%
TTAATGCAAGAGAGGAAATA+GGG - Chr6:70148242-70148261 MsG0680033643.01.T01:CDS 30.0%
TTCCTTCAGAACATTTAGAT+CGG + Chr6:70147789-70147808 None:intergenic 30.0%
TTCTTGCGCTTGAAATTAAA+TGG - Chr6:70149885-70149904 MsG0680033643.01.T01:intron 30.0%
TTTAATGCAAGAGAGGAAAT+AGG - Chr6:70148241-70148260 MsG0680033643.01.T01:CDS 30.0%
! AAGAGCATAAGAAAAACAGA+AGG + Chr6:70147244-70147263 None:intergenic 30.0%
! AATAGGATTTTCATCATCAG+CGG + Chr6:70148723-70148742 None:intergenic 30.0%
! CTCTAGAAACAATCCAATTA+TGG - Chr6:70149673-70149692 MsG0680033643.01.T01:intron 30.0%
! CTCTAGAAACATAAACAAGA+AGG + Chr6:70148775-70148794 None:intergenic 30.0%
! CTTTCTATAGTAGTTGCTTT+GGG - Chr6:70149175-70149194 MsG0680033643.01.T01:intron 30.0%
! GTGAATTCTTTAGTGTTTTG+AGG + Chr6:70147521-70147540 None:intergenic 30.0%
!!! ACTTTTAACTTTTGAGGCAA+TGG - Chr6:70147997-70148016 MsG0680033643.01.T01:intron 30.0%
AAACACCATTCTGTCAATTC+TGG - Chr6:70147919-70147938 MsG0680033643.01.T01:intron 35.0%
AAGAAGAATGCATTGAGTCA+CGG + Chr6:70149870-70149889 None:intergenic 35.0%
AAGGATAAATGCAGACATTG+AGG + Chr6:70149736-70149755 None:intergenic 35.0%
AAGTATGATTCAGGATTCCT+AGG + Chr6:70148082-70148101 None:intergenic 35.0%
AAGTTTATTGTTGGGGAGAT+AGG - Chr6:70148617-70148636 MsG0680033643.01.T01:intron 35.0%
ACCTGTTTAGCATGTATTAG+AGG + Chr6:70148587-70148606 None:intergenic 35.0%
AGGCAATTATCAGAAAATGC+AGG + Chr6:70147625-70147644 None:intergenic 35.0%
ATTTCACCTGATCACTCTAA+GGG - Chr6:70148348-70148367 MsG0680033643.01.T01:CDS 35.0%
CAATTATCAGAAAATGCAGG+TGG + Chr6:70147622-70147641 None:intergenic 35.0%
CCACTATATATACAACTCCA+AGG - Chr6:70148903-70148922 MsG0680033643.01.T01:intron 35.0%
CCTGTTTAGCATGTATTAGA+GGG + Chr6:70148586-70148605 None:intergenic 35.0%
CCTTGGAGTTGTATATATAG+TGG + Chr6:70148906-70148925 None:intergenic 35.0%
GCATGAGTATAATGAGTTCA+AGG - Chr6:70148171-70148190 MsG0680033643.01.T01:CDS 35.0%
GTGATTAGCATATCTATCAG+AGG + Chr6:70149019-70149038 None:intergenic 35.0%
TAAATGGTCAGGAATTCATC+TGG - Chr6:70149901-70149920 MsG0680033643.01.T01:intron 35.0%
TAATGCAAGAGAGGAAATAG+GGG - Chr6:70148243-70148262 MsG0680033643.01.T01:CDS 35.0%
TAATGCTTGATTCTCTTCTG+AGG + Chr6:70149225-70149244 None:intergenic 35.0%
TAGGCTCTATATCATGTTTG+CGG + Chr6:70148063-70148082 None:intergenic 35.0%
TATTTCACCTGATCACTCTA+AGG - Chr6:70148347-70148366 MsG0680033643.01.T01:CDS 35.0%
TTACAAGTAATACGTGAAGC+AGG + Chr6:70147557-70147576 None:intergenic 35.0%
TTCGAAACCTCAAAAGTTCA+TGG - Chr6:70147372-70147391 MsG0680033643.01.T01:intron 35.0%
TTTGAGTAAACCTTGAAGCA+CGG + Chr6:70149987-70150006 None:intergenic 35.0%
! ATTTTTCACAGAAGGGTGAT+CGG + Chr6:70149365-70149384 None:intergenic 35.0%
! CGTATATCCATGAACTTTTG+AGG + Chr6:70147382-70147401 None:intergenic 35.0%
! GACGATTTGCTTACTTTGAA+AGG + Chr6:70147102-70147121 None:intergenic 35.0%
! TCAATTCTGAACGACCATTT+TGG - Chr6:70147310-70147329 MsG0680033643.01.T01:intron 35.0%
! TGATATTTTGCAGATGTTGG+TGG - Chr6:70148664-70148683 MsG0680033643.01.T01:intron 35.0%
! TTGAGTTCCCAAATTGCTTT+TGG + Chr6:70149291-70149310 None:intergenic 35.0%
!! AAAAGCACCATTTGACATGA+TGG + Chr6:70148863-70148882 None:intergenic 35.0%
!! AACTCACATTTTAGCAAAGG+TGG + Chr6:70148032-70148051 None:intergenic 35.0%
!! TGGAACTCACATTTTAGCAA+AGG + Chr6:70148035-70148054 None:intergenic 35.0%
!!! AATGAGCAGTTTTGGTTGAT+TGG - Chr6:70149938-70149957 MsG0680033643.01.T01:CDS 35.0%
ACAAAAATACCGATGCACTC+TGG - Chr6:70147728-70147747 MsG0680033643.01.T01:CDS 40.0%
ACAAGAGATGGTTCTTTCTC+AGG + Chr6:70147893-70147912 None:intergenic 40.0%
ACAATCATGATTGTGATCGG+CGG + Chr6:70150118-70150137 None:intergenic 40.0%
ATAACCAGTGAGCACATCTT+TGG + Chr6:70149530-70149549 None:intergenic 40.0%
ATACAACTCCAAGGCAATGA+GGG - Chr6:70148912-70148931 MsG0680033643.01.T01:intron 40.0%
ATATATAGTGGTCGCAGTCA+AGG + Chr6:70148894-70148913 None:intergenic 40.0%
ATATCATGTTTGCGGCAGAA+TGG + Chr6:70148055-70148074 None:intergenic 40.0%
ATTACCAAAGATGTGCTCAC+TGG - Chr6:70149523-70149542 MsG0680033643.01.T01:CDS 40.0%
ATTCTTGGGGTAGCCATAAT+TGG + Chr6:70149689-70149708 None:intergenic 40.0%
CAACCAGATTCTACATAGAC+TGG + Chr6:70149093-70149112 None:intergenic 40.0%
CAATTCCCTCAAACCTTTGA+GGG + Chr6:70148993-70149012 None:intergenic 40.0%
CATAAACAAGAAGGGGAAGA+CGG + Chr6:70148766-70148785 None:intergenic 40.0%
CCAACAAGAGAACACACTTA+AGG + Chr6:70149452-70149471 None:intergenic 40.0%
CCCTCTAATACATGCTAAAC+AGG - Chr6:70148583-70148602 MsG0680033643.01.T01:intron 40.0%
CCTTAAGTGTGTTCTCTTGT+TGG - Chr6:70149449-70149468 MsG0680033643.01.T01:CDS 40.0%
CTTCCATCAATCTCACTGAT+AGG - Chr6:70149603-70149622 MsG0680033643.01.T01:intron 40.0%
GAAAATCCTATTGACCTGAC+CGG - Chr6:70148731-70148750 MsG0680033643.01.T01:intron 40.0%
GAAATATTCAACCAAGTCCC+TGG + Chr6:70148333-70148352 None:intergenic 40.0%
GATCACCCTTCTGTGAAAAA+TGG - Chr6:70149364-70149383 MsG0680033643.01.T01:CDS 40.0%
GATGCATCAATATGCTTGCT+AGG + Chr6:70149415-70149434 None:intergenic 40.0%
GCAAACATGATATAGAGCCT+AGG - Chr6:70148062-70148081 MsG0680033643.01.T01:CDS 40.0%
GCGCTTGAAATTAAATGGTC+AGG - Chr6:70149890-70149909 MsG0680033643.01.T01:intron 40.0%
GCTGCATCAAGTTCTTAGAT+GGG - Chr6:70149625-70149644 MsG0680033643.01.T01:intron 40.0%
GTATGAGGACAAGACTGAAT+GGG - Chr6:70149471-70149490 MsG0680033643.01.T01:CDS 40.0%
TATACAACTCCAAGGCAATG+AGG - Chr6:70148911-70148930 MsG0680033643.01.T01:intron 40.0%
TATGAGGACAAGACTGAATG+GGG - Chr6:70149472-70149491 MsG0680033643.01.T01:CDS 40.0%
TCAATTCCCTCAAACCTTTG+AGG + Chr6:70148994-70149013 None:intergenic 40.0%
TCACTTTCTTGCTTACCTCT+TGG - Chr6:70149838-70149857 MsG0680033643.01.T01:intron 40.0%
TCCCTCTCCAAAAGCAATTT+GGG - Chr6:70149281-70149300 MsG0680033643.01.T01:CDS 40.0%
TGAAGGTTCCAAAAGCAACA+TGG - Chr6:70148286-70148305 MsG0680033643.01.T01:CDS 40.0%
TGAGATTTCAATGCCTGCTA+CGG + Chr6:70150011-70150030 None:intergenic 40.0%
TGCCGATCTAAATGTTCTGA+AGG - Chr6:70147784-70147803 MsG0680033643.01.T01:CDS 40.0%
TGTCTGCTCATCAACTTAGT+TGG + Chr6:70147156-70147175 None:intergenic 40.0%
TGTGTTCTCTTGTTGGTATG+AGG - Chr6:70149456-70149475 MsG0680033643.01.T01:CDS 40.0%
TTCACCTTGACTTCGAAATC+TGG - Chr6:70150031-70150050 MsG0680033643.01.T01:CDS 40.0%
TTCCCTCTCCAAAAGCAATT+TGG - Chr6:70149280-70149299 MsG0680033643.01.T01:CDS 40.0%
! AAGATGTGCTCACTGGTTAT+AGG - Chr6:70149530-70149549 MsG0680033643.01.T01:CDS 40.0%
! GATTTTCCTGTAGGATTGTC+AGG + Chr6:70147830-70147849 None:intergenic 40.0%
! GGAAGGTATGTGCTTTATGA+TGG - Chr6:70148933-70148952 MsG0680033643.01.T01:intron 40.0%
! GTTTCTAGAGAGAAACATCC+AGG - Chr6:70148785-70148804 MsG0680033643.01.T01:intron 40.0%
!! ACTTATTGACTCGATTCCAG+TGG - Chr6:70149315-70149334 MsG0680033643.01.T01:CDS 40.0%
!! AGAAGGATTGGTACCGATAT+GGG + Chr6:70147227-70147246 None:intergenic 40.0%
!! ATCTTCACTTTTCGTGCAAG+CGG + Chr6:70147186-70147205 None:intergenic 40.0%
!! CTAAGTTGATGAGCAGACAA+TGG - Chr6:70147157-70147176 MsG0680033643.01.T01:CDS 40.0%
!! TCCCAAATTGCTTTTGGAGA+GGG + Chr6:70149285-70149304 None:intergenic 40.0%
!! TTCCCAAATTGCTTTTGGAG+AGG + Chr6:70149286-70149305 None:intergenic 40.0%
!! TTGATTCTCTTCTGAGGTGT+TGG + Chr6:70149219-70149238 None:intergenic 40.0%
!!! AGCAGTTTTGGTTGATTGGA+GGG - Chr6:70149942-70149961 MsG0680033643.01.T01:CDS 40.0%
!!! GGGTGCACTTTTAACTTTTG+AGG - Chr6:70147991-70148010 MsG0680033643.01.T01:intron 40.0%
!!! GTTGCTTTTGGAACCTTCAT+AGG + Chr6:70148285-70148304 None:intergenic 40.0%
AAAGCAACATGGATGGCTGA+TGG - Chr6:70148297-70148316 MsG0680033643.01.T01:CDS 45.0%
AAGCGTGTTGGATGGATCTA+CGG - Chr6:70149496-70149515 MsG0680033643.01.T01:CDS 45.0%
AAGCTGGGCAATGAATGCAT+TGG - Chr6:70148825-70148844 MsG0680033643.01.T01:intron 45.0%
AAGTAATACGTGAAGCAGGC+TGG + Chr6:70147553-70147572 None:intergenic 45.0%
ACAGGAAAATCTGATCTGCC+AGG - Chr6:70147839-70147858 MsG0680033643.01.T01:CDS 45.0%
ACCACCAGATTTCGAAGTCA+AGG + Chr6:70150038-70150057 None:intergenic 45.0%
ACCTTGACTTCGAAATCTGG+TGG - Chr6:70150034-70150053 MsG0680033643.01.T01:CDS 45.0%
ACGACCACAACAAGAAAGCT+GGG - Chr6:70148810-70148829 MsG0680033643.01.T01:intron 45.0%
AGAAGAGGTTCATCACTTGG+AGG + Chr6:70148692-70148711 None:intergenic 45.0%
AGCTGCCAGAATTGACAGAA+TGG + Chr6:70147927-70147946 None:intergenic 45.0%
AGTGAACTGTCCTGAGAAGA+GGG + Chr6:70149802-70149821 None:intergenic 45.0%
ATACCGATGCACTCTGGTTA+TGG - Chr6:70147734-70147753 MsG0680033643.01.T01:CDS 45.0%
ATGAGGACAAGACTGAATGG+GGG - Chr6:70149473-70149492 MsG0680033643.01.T01:CDS 45.0%
ATTGCAGTCAAATGCGGCTT+TGG - Chr6:70148515-70148534 MsG0680033643.01.T01:intron 45.0%
ATTGCCCAGCTTTCTTGTTG+TGG + Chr6:70148817-70148836 None:intergenic 45.0%
CACTTGCACTGTTCTTGCAT+TGG - Chr6:70147697-70147716 MsG0680033643.01.T01:CDS 45.0%
CAGCCTATCAGTGAGATTGA+TGG + Chr6:70149609-70149628 None:intergenic 45.0%
CAGGAATTCATCTGGAAGAC+TGG - Chr6:70149909-70149928 MsG0680033643.01.T01:intron 45.0%
CAGTTCCCTCAAAGGTTTGA+GGG - Chr6:70148985-70149004 MsG0680033643.01.T01:intron 45.0%
CCAAGAAGAGGTTCATCACT+TGG + Chr6:70148695-70148714 None:intergenic 45.0%
CCAAGTGATGAACCTCTTCT+TGG - Chr6:70148692-70148711 MsG0680033643.01.T01:intron 45.0%
GAATTCATCTGGAAGACTGG+TGG - Chr6:70149912-70149931 MsG0680033643.01.T01:intron 45.0%
GGCTGCATCAAGTTCTTAGA+TGG - Chr6:70149624-70149643 MsG0680033643.01.T01:intron 45.0%
GGTATGAGGACAAGACTGAA+TGG - Chr6:70149470-70149489 MsG0680033643.01.T01:CDS 45.0%
GGTTCCAAAAGCAACATGGA+TGG - Chr6:70148290-70148309 MsG0680033643.01.T01:CDS 45.0%
TACGACCACAACAAGAAAGC+TGG - Chr6:70148809-70148828 MsG0680033643.01.T01:intron 45.0%
TGAACCTGTTGAGCCTATGA+AGG - Chr6:70148269-70148288 MsG0680033643.01.T01:CDS 45.0%
TGAAGCAGGCTGGTATCATA+TGG + Chr6:70147543-70147562 None:intergenic 45.0%
TGCACTGTTCTTGCATTGGA+GGG - Chr6:70147701-70147720 MsG0680033643.01.T01:CDS 45.0%
TTGAAGCACGGCAACAAGAT+GGG + Chr6:70149975-70149994 None:intergenic 45.0%
TTGCACTGTTCTTGCATTGG+AGG - Chr6:70147700-70147719 MsG0680033643.01.T01:CDS 45.0%
TTGTGATCGGCGGTATCATA+AGG + Chr6:70150108-70150127 None:intergenic 45.0%
! ATGCTATGTTTCTGACGACG+CGG - Chr6:70147970-70147989 MsG0680033643.01.T01:intron 45.0%
! GGCAGATCAGATTTTCCTGT+AGG + Chr6:70147839-70147858 None:intergenic 45.0%
! GGTGGAGAAATGAGCAGTTT+TGG - Chr6:70149930-70149949 MsG0680033643.01.T01:CDS 45.0%
! GGTTTTCTTTCGCAAGTGGA+GGG + Chr6:70149149-70149168 None:intergenic 45.0%
! TGTGCTCACTGGTTATAGGA+TGG - Chr6:70149534-70149553 MsG0680033643.01.T01:CDS 45.0%
! TTCTTGTTGTGGTCGTAACC+TGG + Chr6:70148806-70148825 None:intergenic 45.0%
!! ATGTGCTTTATGATGGACCG+TGG - Chr6:70148940-70148959 MsG0680033643.01.T01:intron 45.0%
!! CAGAAGGATTGGTACCGATA+TGG + Chr6:70147228-70147247 None:intergenic 45.0%
!! GGCGACCATTTTTCACAGAA+GGG + Chr6:70149372-70149391 None:intergenic 45.0%
!! GTGTTTGCTGTGACAAGAGA+TGG + Chr6:70147905-70147924 None:intergenic 45.0%
!!! GAGCAGTTTTGGTTGATTGG+AGG - Chr6:70149941-70149960 MsG0680033643.01.T01:CDS 45.0%
!!! TCAGCCATCCATGTTGCTTT+TGG + Chr6:70148297-70148316 None:intergenic 45.0%
AACTCCAAGGCAATGAGGGA+AGG - Chr6:70148916-70148935 MsG0680033643.01.T01:intron 50.0%
ACATAACACGATGCCTTCCG+CGG - Chr6:70149575-70149594 MsG0680033643.01.T01:intron 50.0%
ACCATTTGACATGATGGCCG+AGG + Chr6:70148857-70148876 None:intergenic 50.0%
ATTCCAGTGGCAGAGTTCCA+AGG - Chr6:70149328-70149347 MsG0680033643.01.T01:CDS 50.0%
CAGTGAACTGTCCTGAGAAG+AGG + Chr6:70149803-70149822 None:intergenic 50.0%
CATACCTTCCCTCATTGCCT+TGG + Chr6:70148923-70148942 None:intergenic 50.0%
CATCTTGTTGCCGTGCTTCA+AGG - Chr6:70149974-70149993 MsG0680033643.01.T01:CDS 50.0%
CCAAGTCCTGACAATCCTAC+AGG - Chr6:70147821-70147840 MsG0680033643.01.T01:CDS 50.0%
CCAGTTCCCTCAAAGGTTTG+AGG - Chr6:70148984-70149003 MsG0680033643.01.T01:intron 50.0%
CCTGTAGGATTGTCAGGACT+TGG + Chr6:70147824-70147843 None:intergenic 50.0%
CTTGAAGCACGGCAACAAGA+TGG + Chr6:70149976-70149995 None:intergenic 50.0%
GAGACAAAGACGTCTATGCC+TGG + Chr6:70147860-70147879 None:intergenic 50.0%
GAGTCACGGTAATAGCCAAG+AGG + Chr6:70149856-70149875 None:intergenic 50.0%
GATTGATGGAAGCAGTTCCG+CGG + Chr6:70149595-70149614 None:intergenic 50.0%
GCTATGTCCAGTTCCCTCAA+AGG - Chr6:70148977-70148996 MsG0680033643.01.T01:intron 50.0%
GCTCCATAACCAGAGTGCAT+CGG + Chr6:70147740-70147759 None:intergenic 50.0%
GGAACCTTCATAGGCTCAAC+AGG + Chr6:70148276-70148295 None:intergenic 50.0%
GGGAAGACGGATATCAACAC+CGG + Chr6:70148753-70148772 None:intergenic 50.0%
GGGCCAGTCTATGTAGAATC+TGG - Chr6:70149087-70149106 MsG0680033643.01.T01:intron 50.0%
GGTTTACTCAAAGCCGTAGC+AGG - Chr6:70149995-70150014 MsG0680033643.01.T01:CDS 50.0%
GTTAACATGCGAGCCCTTGA+TGG - Chr6:70149057-70149076 MsG0680033643.01.T01:CDS 50.0%
TATGGGCTCAGAACAGCAGA+AGG + Chr6:70147210-70147229 None:intergenic 50.0%
TCAACACCGGTCAGGTCAAT+AGG + Chr6:70148740-70148759 None:intergenic 50.0%
TGGCCCTTGAAGTCCATCAA+GGG + Chr6:70149073-70149092 None:intergenic 50.0%
TGGTCACCCTTAGAGTGATC+AGG + Chr6:70148357-70148376 None:intergenic 50.0%
TTCCTTACTCTCTCCGTGAC+AGG - Chr6:70148209-70148228 MsG0680033643.01.T01:CDS 50.0%
! CCTCAAACCTTTGAGGGAAC+TGG + Chr6:70148987-70149006 None:intergenic 50.0%
! CGGTTTTCTTTCGCAAGTGG+AGG + Chr6:70149150-70149169 None:intergenic 50.0%
! CTGATGGATCTCATTGGCCA+GGG - Chr6:70148313-70148332 MsG0680033643.01.T01:CDS 50.0%
! CTGCTGTTCTGAGCCCATAT+CGG - Chr6:70147211-70147230 MsG0680033643.01.T01:CDS 50.0%
! GAATGCATTGGTCAGAGCCT+CGG - Chr6:70148837-70148856 MsG0680033643.01.T01:intron 50.0%
! GGATGGCTGATGGATCTCAT+TGG - Chr6:70148307-70148326 MsG0680033643.01.T01:CDS 50.0%
! GTGCGGTTTTCTTTCGCAAG+TGG + Chr6:70149153-70149172 None:intergenic 50.0%
! TGCTATGTTTCTGACGACGC+GGG - Chr6:70147971-70147990 MsG0680033643.01.T01:intron 50.0%
!! CGGCGACCATTTTTCACAGA+AGG + Chr6:70149373-70149392 None:intergenic 50.0%
!! GAGCCCTTGATGGACTTCAA+GGG - Chr6:70149067-70149086 MsG0680033643.01.T01:CDS 50.0%
!! GCAGTCAAACGCGGTTTTGT+AGG - Chr6:70148450-70148469 MsG0680033643.01.T01:intron 50.0%
!! TGCTTTATGATGGACCGTGG+TGG - Chr6:70148943-70148962 MsG0680033643.01.T01:intron 50.0%
ACAGAAGGGTGATCGGCAAG+TGG + Chr6:70149358-70149377 None:intergenic 55.0%
ACTGTCCTGAGAAGAGGGAG+AGG + Chr6:70149797-70149816 None:intergenic 55.0%
CAGTGGCAGAGTTCCAAGGT+AGG - Chr6:70149332-70149351 MsG0680033643.01.T01:CDS 55.0%
CTACCTTGGAACTCTGCCAC+TGG + Chr6:70149334-70149353 None:intergenic 55.0%
CTGGCCCTTGAAGTCCATCA+AGG + Chr6:70149074-70149093 None:intergenic 55.0%
CTGTCCTGAGAAGAGGGAGA+GGG + Chr6:70149796-70149815 None:intergenic 55.0%
GACCTGTCACGGAGAGAGTA+AGG + Chr6:70148214-70148233 None:intergenic 55.0%
GACGGATATCAACACCGGTC+AGG + Chr6:70148748-70148767 None:intergenic 55.0%
GAGGGAACTGGACATAGCAG+AGG + Chr6:70148975-70148994 None:intergenic 55.0%
GATCTCATTGGCCAGGGACT+TGG - Chr6:70148319-70148338 MsG0680033643.01.T01:CDS 55.0%
GCCTCGGCCATCATGTCAAA+TGG - Chr6:70148853-70148872 MsG0680033643.01.T01:intron 55.0%
GGAACTGGACATAGCAGAGG+CGG + Chr6:70148972-70148991 None:intergenic 55.0%
GTGAAAAATGGTCGCCGTCC+TGG - Chr6:70149376-70149395 MsG0680033643.01.T01:CDS 55.0%
TCAGCGGCACTTCCAAGAAG+AGG + Chr6:70148707-70148726 None:intergenic 55.0%
! AATGGGGGAAGCGTGTTGGA+TGG - Chr6:70149488-70149507 MsG0680033643.01.T01:CDS 55.0%
! ACTGAATGGGGGAAGCGTGT+TGG - Chr6:70149484-70149503 MsG0680033643.01.T01:CDS 55.0%
! GCTGATGGATCTCATTGGCC+AGG - Chr6:70148312-70148331 MsG0680033643.01.T01:CDS 55.0%
!! CGAGCCCTTGATGGACTTCA+AGG - Chr6:70149066-70149085 MsG0680033643.01.T01:CDS 55.0%
!! CTAGGTGTGATGAGAGCACC+AGG + Chr6:70149397-70149416 None:intergenic 55.0%
!! GTGTGATGAGAGCACCAGGA+CGG + Chr6:70149393-70149412 None:intergenic 55.0%
GATCGGCAAGTGGCCTACCT+TGG + Chr6:70149348-70149367 None:intergenic 60.0%
GATGGAAGCAGTTCCGCGGA+AGG + Chr6:70149591-70149610 None:intergenic 60.0%
AGCAGAGGCGGTCACCACCA+CGG + Chr6:70148960-70148979 None:intergenic 65.0%
CCTGAGAAGAGGGAGAGGGC+AGG + Chr6:70149792-70149811 None:intergenic 65.0%
CCTGCCCTCTCCCTCTTCTC+AGG - Chr6:70149789-70149808 MsG0680033643.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 70147087 70150144 70147087 ID=MsG0680033643.01;Name=MsG0680033643.01
Chr6 mRNA 70147087 70150144 70147087 ID=MsG0680033643.01.T01;Parent=MsG0680033643.01;Name=MsG0680033643.01.T01;_AED=0.49;_eAED=0.53;_QI=0|0|0|1|0.8|0.83|6|0|508
Chr6 exon 70149925 70150144 70149925 ID=MsG0680033643.01.T01:exon:1923;Parent=MsG0680033643.01.T01
Chr6 exon 70149187 70149559 70149187 ID=MsG0680033643.01.T01:exon:1924;Parent=MsG0680033643.01.T01
Chr6 exon 70149001 70149099 70149001 ID=MsG0680033643.01.T01:exon:1925;Parent=MsG0680033643.01.T01
Chr6 exon 70148033 70148424 70148033 ID=MsG0680033643.01.T01:exon:1926;Parent=MsG0680033643.01.T01
Chr6 exon 70147687 70147896 70147687 ID=MsG0680033643.01.T01:exon:1927;Parent=MsG0680033643.01.T01
Chr6 exon 70147087 70147319 70147087 ID=MsG0680033643.01.T01:exon:1928;Parent=MsG0680033643.01.T01
Chr6 CDS 70149925 70150144 70149925 ID=MsG0680033643.01.T01:cds;Parent=MsG0680033643.01.T01
Chr6 CDS 70149187 70149559 70149187 ID=MsG0680033643.01.T01:cds;Parent=MsG0680033643.01.T01
Chr6 CDS 70149001 70149099 70149001 ID=MsG0680033643.01.T01:cds;Parent=MsG0680033643.01.T01
Chr6 CDS 70148033 70148424 70148033 ID=MsG0680033643.01.T01:cds;Parent=MsG0680033643.01.T01
Chr6 CDS 70147687 70147896 70147687 ID=MsG0680033643.01.T01:cds;Parent=MsG0680033643.01.T01
Chr6 CDS 70147087 70147319 70147087 ID=MsG0680033643.01.T01:cds;Parent=MsG0680033643.01.T01
Gene Sequence

>MsG0680033643.01.T01

ATGGCATCAAAACCTTTCAAAGTAAGCAAATCGTCGATATCAGAAACTTCTGATGATTTTGTTGTACCAACTAAGTTGATGAGCAGACAATGGAGACCGCTTGCACGAAAAGTGAAGATACCTTCTGCTGTTCTGAGCCCATATCGGTACCAATCCTTCTGTTTTTCTTATGCTCTTTTCTATAAAGAATATGTTTTTAATAATCATAAATGCATTTTATCTTCATTATTTTATTCGTATGGTGGCACTTGCACTGTTCTTGCATTGGAGGGTCACACAAAAATACCGATGCACTCTGGTTATGGAGCATGTCTGTTGTTTGTGAATCATTTTGCCGATCTAAATGTTCTGAAGGAAAAATTTGAATCACCAAGTCCTGACAATCCTACAGGAAAATCTGATCTGCCAGGCATAGACGTCTTTGTCTCAACTGTTGATCCTGAGAAAGAACCATCTCTTGTCACAGCAAACACCATTCTGTCAATTCTGGCAGCTAATTATGCAGTTGAGAAGCTTTCATGCTATGTTTCTGACGACGCGGGTGCACTTTTAACTTTTGAGGCAATGGCTCAAGCTGCCACCTTTGCTAAAATAGTGAAACCTGATTTAGTGAATGATAGTAGAAGGCTGAAGCATGAGTATAATGAGTTCAAGGCCAGAATCAATAATATTCCTTACTCTCTCCGTGACAGGTTACGACCACAACAAGAAAGCTGGGCAATGAATGCATTGGTCAGAGCCTCGGCCATCATGTCAAATGGTGCTTTTATACTCAACCTTGACTGCGACCACTATATATACAACTCCAAGGCAATGAGGGAAGGTATGTGCTTTATGATGGACCGTGGTGGTGACCGCCTCTGCTATGTCCAGTTCCCTCAAAGGTTTGAGGGAATTGATCCCTCTGATAGATATGCTAATCACAACACGGTCTTCTTCGATGTTAACATGCGAGCCCTTGATGGACTTCAAGGGCCAGTCTATGTAGAATCTGGTTGTCTGTTTAGAAGAGTTTCACTTTATGGTTTTGACCCTCCACTTGCGAAAGAAAACCGCACAACTTTCTATAGTAGTTGCTTTGGGTTGGCAGAGTTCCAAGGTAGGCCACTTGCCGATCACCCTTCTGTGAAAAATGGTCGCCGTCCTGGTGCTCTCATCACACCTAGCAAGCATATTGATGCATCAACATTGAATGAAGCCTTAAGTGTGTTCTCTTGTTGGTATGAGGACAAGACTGAATGGGGGAAGCGTGTTGGATGGATCTACGGATCAATTACCAAAGATGTGCTCACTGGAATTCATCTGGAAGACTGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACTAGTGCCCATCTTGTTGCCGTGCTTCAAGGTTTACTCAAAGCCGTAGCAGGCATTGAAATCTCATTCACCTTGACTTCGAAATCTGGTGGTGATGTTGACGATGATTTTGCTGATCTTTATGTTGTCAAATGGTCATACCTTATGATACCGCCGATCACAATCATGATTGTAAATTAA

Protein sequence

>MsG0680033643.01.T01

MASKPFKVSKSSISETSDDFVVPTKLMSRQWRPLARKVKIPSAVLSPYRYQSFCFSYALFYKEYVFNNHKCILSSLFYSYGGTCTVLALEGHTKIPMHSGYGACLLFVNHFADLNVLKEKFESPSPDNPTGKSDLPGIDVFVSTVDPEKEPSLVTANTILSILAANYAVEKLSCYVSDDAGALLTFEAMAQAATFAKIVKPDLVNDSRRLKHEYNEFKARINNIPYSLRDRLRPQQESWAMNALVRASAIMSNGAFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVESGCLFRRVSLYGFDPPLAKENRTTFYSSCFGLAEFQGRPLADHPSVKNGRRPGALITPSKHIDASTLNEALSVFSCWYEDKTEWGKRVGWIYGSITKDVLTGIHLEDWWRNEQFWLIGGTSAHLVAVLQGLLKAVAGIEISFTLTSKSGGDVDDDFADLYVVKWSYLMIPPITIMIVN*