AlfalfaGEDB | MsG0780041129.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041129.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041129.01.T01	XP_003625826.1	84.502	271	21	2	1	269	45	296	6.60E-158	451

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041129.01.T01	Q9SR77	62.222	270	80	3	1	267	57	307	6.89E-110	322

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041129.01.T01	G7KQV2	84.502	271	21	2	1	269	45	296	3.15e-158	451

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048506.01	MsG0780041129.01	-0.832425	9.520687e-56	1.063734e-52
MsG0080048507.01	MsG0780041129.01	-0.843020	1.811121e-58	2.796158e-55
MsG0080048748.01	MsG0780041129.01	0.817355	3.442915e-52	2.501535e-49
MsG0080048887.01	MsG0780041129.01	0.801129	1.041556e-48	4.935664e-46
MsG0080048938.01	MsG0780041129.01	0.818157	2.269042e-52	1.685350e-49
MsG0080048969.01	MsG0780041129.01	0.832906	7.235060e-56	8.200278e-53
MsG0080048993.01	MsG0780041129.01	0.811028	8.593888e-51	5.262701e-48
MsG0080049070.01	MsG0780041129.01	0.842383	2.674548e-58	4.048475e-55
MsG0180000017.01	MsG0780041129.01	0.818929	1.516437e-52	1.150773e-49
MsG0180000040.01	MsG0780041129.01	0.839180	1.848650e-57	2.532740e-54

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041129.01.T01	MTR_7g104650	84.502	271	21	2	1	269	45	296	8.00e-162	451
MsG0780041129.01.T01	MTR_4g019130	33.486	218	108	8	58	265	11	201	1.35e-21	90.1
MsG0780041129.01.T01	MTR_4g019150	32.877	219	111	9	57	265	10	202	3.96e-21	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041129.01.T01	AT3G10130	62.222	270	80	3	1	267	57	307	7.02e-111	322
MsG0780041129.01.T01	AT2G37970	34.862	218	121	9	57	265	41	246	1.36e-22	93.6
MsG0780041129.01.T01	AT5G20140	32.243	214	99	8	55	265	203	373	2.82e-19	86.7
MsG0780041129.01.T01	AT5G20140	32.828	198	86	8	55	249	203	356	4.24e-18	83.6

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Find 21 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATAATGTATCCACAGGGCT+TGG	0.453655	7:+86916122	MsG0780041129.01.T01:exon
ACGCCGTAATGAGATTGCAT+TGG	0.545636	7:+86915804	MsG0780041129.01.T01:exon
AGATTGCATTGGAGGTGGAG+TGG	0.593319	7:+86915815	MsG0780041129.01.T01:exon
AGTACCTCGAAACTGTATAT+TGG	0.398060	7:-86915862	None:intergenic
ATCTCATTACGGCGTTGAAA+TGG	0.406251	7:-86915796	None:intergenic
ATGGTAATAATGTATCCACA+GGG	0.754060	7:+86916117	MsG0780041129.01.T01:exon
CAAACATCAACGTTGAGTAC+AGG	0.541578	7:-86916011	None:intergenic
CCGTAATGAGATTGCATTGG+AGG	0.470725	7:+86915807	MsG0780041129.01.T01:exon
CCTCCAATGCAATCTCATTA+CGG	0.447950	7:-86915807	None:intergenic
CGTTGAAATGGAAGAGAAAA+TGG	0.259478	7:-86915784	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTACCATTTGAAGAAGAA+AGG	-	Chr7:86915735-86915754	None:intergenic	30.0%
AACTTCTCTCAAAAGTGAAA+GGG	-	Chr7:86914034-86914053	None:intergenic	30.0%
ACTACCATTTGAAGAAGAAA+GGG	-	Chr7:86915734-86915753	None:intergenic	30.0%
AGACAAATGATCGATTAATC+CGG	-	Chr7:86913505-86913524	None:intergenic	30.0%
ATCGATGTATTATCTTAGAC+TGG	+	Chr7:86914886-86914905	MsG0780041129.01.T01:intron	30.0%
ATGGTAATAATGTATCCACA+GGG	+	Chr7:86916117-86916136	MsG0780041129.01.T01:exon	30.0%
ATGTGAGTAAGTAAAAACCA+CGG	-	Chr7:86912439-86912458	None:intergenic	30.0%
ATGTTTCCTGCAAATAGAAA+AGG	+	Chr7:86913638-86913657	MsG0780041129.01.T01:intron	30.0%
CAATCAAATTAAAGTTCAGC+TGG	+	Chr7:86914430-86914449	MsG0780041129.01.T01:intron	30.0%
CAATTTCCCTAATTTCATAC+TGG	-	Chr7:86913121-86913140	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	86912199	86916141	86912199	ID=MsG0780041129.01;
Chr7	mRNA	86912199	86916141	86912199	ID=MsG0780041129.01.T01;Parent=MsG0780041129.01
Chr7	exon	86912199	86912802	86912199	ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7	CDS	86912730	86912802	86912730	ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7	CDS	86912898	86912984	86912898	ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7	exon	86912898	86912984	86912898	ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7	CDS	86913072	86913142	86913072	ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7	exon	86913072	86913142	86913072	ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7	CDS	86913844	86913939	86913844	ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7	exon	86913844	86913939	86913844	ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7	CDS	86914083	86914187	86914083	ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7	exon	86914083	86914187	86914083	ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7	CDS	86914765	86914821	86914765	ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7	exon	86914765	86914821	86914765	ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7	CDS	86914904	86915039	86914904	ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7	exon	86914904	86915039	86914904	ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7	CDS	86915566	86915675	86915566	ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7	exon	86915566	86915675	86915566	ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7	CDS	86915775	86915849	86915775	ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7	exon	86915775	86916141	86915775	ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01

Gene Sequence

>MsG0780041129.01.T01

ATGTCAGCATTCGAAGCTCGAATCTCACTCATTTTCGCTCTCGCTTCTCAATCCACCTCTCTCTCACAGCGACTTGTTGCCGATGCCGTTACTGAGACTGCAAAGTACTTGTTTCCAAAAAGATTTGAAAGCCGTACTCTCGAAGAAGCGTTCATGACAGTTCCGGACCTTGAGACTGTCAAGTTCAAAGTTCTAACTAGAAGGGACCAGTATGAAATTAGGGAAATTGAGCCTTACTTTGTAGCAGAGACTACAATGCCTGGGAAGAGTGGGTTCGATTTCAGTGGTTCTTCTCAGTCATTTAATGTCCTTGCCGGATACCTTTTGAATACAACGGAGGAGAAAATGGAGATGACTACACCTGTTTTTACCAGTAAGAATCAATCTGACGGGGTTAAAATGGATATGACAACTCCCGTGTTAACAACAAAGTGCGCTCCTCTCAGCGTCTTAGGTTTGATTCTCCCCGGTGCCAATTTCCATGGGCTAACTGGAGATAAAGATGAGTGGAAAATGTCTTTTGTCATGCCTTCAAAGTACGGTGCTAACTTGCCACTGCCTAAAGATTCCTCTGTGACAATTAAAGAGGTGGCCAGAAAAATAGTTGCTGTGGTTTCCTTTTCAGGTTTTGTAAATGATGAAGAAGTTAAGAGGCGTGAATCGAAACTAAGAGAAGCCATGAAAAATGACGGACAGTTCAAAATTAAAGAGGGAACTTCAGTAGAAATTGCACAGTATAATCCCCCATTTTCTCTTCCATTTCAACGCCGTAATGAGATTGCATTGGAGGTGGAGTGGAAAAACAAGTAG

Protein sequence

>MsG0780041129.01.T01

MSAFEARISLIFALASQSTSLSQRLVADAVTETAKYLFPKRFESRTLEEAFMTVPDLETVKFKVLTRRDQYEIREIEPYFVAETTMPGKSGFDFSGSSQSFNVLAGYLLNTTEEKMEMTTPVFTSKNQSDGVKMDMTTPVLTTKCAPLSVLGLILPGANFHGLTGDKDEWKMSFVMPSKYGANLPLPKDSSVTIKEVARKIVAVVSFSGFVNDEEVKRRESKLREAMKNDGQFKIKEGTSVEIAQYNPPFSLPFQRRNEIALEVEWKNK*