AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041129.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041129.01.T01 MTR_7g104650 84.502 271 21 2 1 269 45 296 8.00e-162 451
MsG0780041129.01.T01 MTR_4g019130 33.486 218 108 8 58 265 11 201 1.35e-21 90.1
MsG0780041129.01.T01 MTR_4g019150 32.877 219 111 9 57 265 10 202 3.96e-21 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041129.01.T01 AT3G10130 62.222 270 80 3 1 267 57 307 7.02e-111 322
MsG0780041129.01.T01 AT2G37970 34.862 218 121 9 57 265 41 246 1.36e-22 93.6
MsG0780041129.01.T01 AT5G20140 32.243 214 99 8 55 265 203 373 2.82e-19 86.7
MsG0780041129.01.T01 AT5G20140 32.828 198 86 8 55 249 203 356 4.24e-18 83.6

Find 21 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTGAAATGGAAGAGAAAA+TGG 0.259478 7:-86915784 None:intergenic
TATTGATAAACAACAATATT+AGG 0.294362 7:-86916058 None:intergenic
GTTTGTGTGTGTATTGAGTA+TGG 0.374915 7:+86916098 MsG0780041129.01.T01:exon
AGTACCTCGAAACTGTATAT+TGG 0.398060 7:-86915862 None:intergenic
ATCTCATTACGGCGTTGAAA+TGG 0.406251 7:-86915796 None:intergenic
CCTCCAATGCAATCTCATTA+CGG 0.447950 7:-86915807 None:intergenic
AATAATGTATCCACAGGGCT+TGG 0.453655 7:+86916122 MsG0780041129.01.T01:exon
CCGTAATGAGATTGCATTGG+AGG 0.470725 7:+86915807 MsG0780041129.01.T01:exon
GTTGAAATGGAAGAGAAAAT+GGG 0.501128 7:-86915783 None:intergenic
TCTGATTCATGATAACGAAC+AGG 0.503810 7:-86915923 None:intergenic
TTTGCCAATATACAGTTTCG+AGG 0.508866 7:+86915858 MsG0780041129.01.T01:exon
TATGGTAATAATGTATCCAC+AGG 0.509703 7:+86916116 MsG0780041129.01.T01:exon
GAGTACAAAATATCTTGTAC+TGG 0.521635 7:-86915948 None:intergenic
CAAACATCAACGTTGAGTAC+AGG 0.541578 7:-86916011 None:intergenic
ACGCCGTAATGAGATTGCAT+TGG 0.545636 7:+86915804 MsG0780041129.01.T01:exon
TAATGAGATTGCATTGGAGG+TGG 0.555048 7:+86915810 MsG0780041129.01.T01:exon
AGATTGCATTGGAGGTGGAG+TGG 0.593319 7:+86915815 MsG0780041129.01.T01:exon
TTGAAATGGAAGAGAAAATG+GGG 0.598136 7:-86915782 None:intergenic
GGTCTAGGGTCCAAGCCCTG+TGG 0.693858 7:-86916132 None:intergenic
TGAAATGGAAGAGAAAATGG+GGG 0.710764 7:-86915781 None:intergenic
ATGGTAATAATGTATCCACA+GGG 0.754060 7:+86916117 MsG0780041129.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATTAACATGTAATT+GGG - Chr7:86914660-86914679 None:intergenic 10.0%
!! GAAAAATACATAATTAATTT+AGG - Chr7:86915526-86915545 None:intergenic 10.0%
!! TATATATATTAACATGTAAT+TGG - Chr7:86914661-86914680 None:intergenic 10.0%
!! TTGTATATTGTTAATTATTT+CGG + Chr7:86913030-86913049 MsG0780041129.01.T01:intron 10.0%
!!! ATGTTAATATATATATTTTC+TGG + Chr7:86914666-86914685 MsG0780041129.01.T01:intron 10.0%
!!! CTATAATTATTCAAATATTT+TGG + Chr7:86913153-86913172 MsG0780041129.01.T01:intron 10.0%
!!! GATTTTTTTTCATAATAAAA+TGG + Chr7:86914195-86914214 MsG0780041129.01.T01:intron 10.0%
!! AACTAATAAAAAACTCATAA+AGG - Chr7:86913303-86913322 None:intergenic 15.0%
!! GAATCAAATGTTTATTTAAA+TGG + Chr7:86913556-86913575 MsG0780041129.01.T01:intron 15.0%
!! TATTGATAAACAACAATATT+AGG - Chr7:86916061-86916080 None:intergenic 15.0%
!! TGAAAAATAAATATTAGGTT+AGG - Chr7:86914350-86914369 None:intergenic 15.0%
!! TTATAAATTCCTTTCAATTA+TGG + Chr7:86914308-86914327 MsG0780041129.01.T01:intron 15.0%
!!! ATATATTGAAATAATTTTGC+TGG - Chr7:86914271-86914290 None:intergenic 15.0%
!!! TGCATTTTTAAAATTTCATT+GGG + Chr7:86913978-86913997 MsG0780041129.01.T01:intron 15.0%
!!! TTTTTTTCTTTTTTGTGAAT+AGG + Chr7:86915987-86916006 MsG0780041129.01.T01:exon 15.0%
!! AAGCCATATGAAAATAAATA+AGG - Chr7:86914247-86914266 None:intergenic 20.0%
!! AATCTCCACTATAATAATAA+TGG - Chr7:86912399-86912418 None:intergenic 20.0%
!! ATCTCCACTATAATAATAAT+GGG - Chr7:86912398-86912417 None:intergenic 20.0%
!! ATGACTGAATATTTAACTAA+TGG + Chr7:86915151-86915170 MsG0780041129.01.T01:intron 20.0%
!! ATTCATAGGTTCTTTAAATA+TGG + Chr7:86914534-86914553 MsG0780041129.01.T01:intron 20.0%
!! CACTTATAATAAGTATTTAG+AGG - Chr7:86915471-86915490 None:intergenic 20.0%
!! CTCTAAATACTTATTATAAG+TGG + Chr7:86915469-86915488 MsG0780041129.01.T01:intron 20.0%
!! GTATTGGATTATGATTATAA+AGG + Chr7:86915124-86915143 MsG0780041129.01.T01:intron 20.0%
!! GTTCTTATTGAAGTTATTTA+GGG + Chr7:86913681-86913700 MsG0780041129.01.T01:intron 20.0%
!! TACTAGCAATACATTATAAT+TGG - Chr7:86915362-86915381 None:intergenic 20.0%
!! TATTCCCATTATTATTATAG+TGG + Chr7:86912391-86912410 MsG0780041129.01.T01:exon 20.0%
!! TGTTCTTATTGAAGTTATTT+AGG + Chr7:86913680-86913699 MsG0780041129.01.T01:intron 20.0%
!! TTGATATTGTTCTTTACTAT+AGG + Chr7:86914617-86914636 MsG0780041129.01.T01:intron 20.0%
!! TTGATTGAAATGAAATACAA+GGG - Chr7:86912618-86912637 None:intergenic 20.0%
!!! AGTCCTTATTTATTTTCATA+TGG + Chr7:86914241-86914260 MsG0780041129.01.T01:intron 20.0%
!!! ATACAATATACAAAGCATTA+AGG - Chr7:86915054-86915073 None:intergenic 20.0%
!!! ATTTTCTTTTTGTTCACAAA+AGG + Chr7:86913203-86913222 MsG0780041129.01.T01:intron 20.0%
!!! CAATGAAATTTTAAAAATGC+AGG - Chr7:86913979-86913998 None:intergenic 20.0%
!!! CTGCATTTTTAAAATTTCAT+TGG + Chr7:86913977-86913996 MsG0780041129.01.T01:intron 20.0%
!!! GATTCTTCGTTTTTTTATTT+TGG - Chr7:86913541-86913560 None:intergenic 20.0%
!!! GTTTTTTTATTTTGGAAACT+TGG - Chr7:86913533-86913552 None:intergenic 20.0%
!!! TTTAGTTCTAGTATTCAATT+AGG + Chr7:86914699-86914718 MsG0780041129.01.T01:intron 20.0%
! AAAATGATGAAGAGATAAGT+AGG - Chr7:86912832-86912851 None:intergenic 25.0%
! ACTGGTATTATTACAAAACA+TGG - Chr7:86913779-86913798 None:intergenic 25.0%
! ATAGATACAACTTTCTTGTT+AGG - Chr7:86912661-86912680 None:intergenic 25.0%
! ATTATTGAGTGTAATTCATG+TGG + Chr7:86915270-86915289 MsG0780041129.01.T01:intron 25.0%
! ATTTCTTCATGTTCTTACTT+GGG + Chr7:86913234-86913253 MsG0780041129.01.T01:intron 25.0%
! CATGCAAATATACATATGAA+TGG - Chr7:86915210-86915229 None:intergenic 25.0%
! CTGGTATTATTACAAAACAT+GGG - Chr7:86913778-86913797 None:intergenic 25.0%
! CTTGAACTTTACATATTACT+GGG - Chr7:86914560-86914579 None:intergenic 25.0%
! GTTGATTGAAATGAAATACA+AGG - Chr7:86912619-86912638 None:intergenic 25.0%
! TAAATGATGAAGAAGTTAAG+AGG + Chr7:86915572-86915591 MsG0780041129.01.T01:CDS 25.0%
! TGGAAAAACTTTCATTAACT+TGG + Chr7:86913612-86913631 MsG0780041129.01.T01:intron 25.0%
! TGGAAAAGCTTTCATTAATT+TGG + Chr7:86913576-86913595 MsG0780041129.01.T01:intron 25.0%
! TTCAATTCCCAAAATAAACA+TGG + Chr7:86912576-86912595 MsG0780041129.01.T01:exon 25.0%
!! AATTTGGAGCTAATTCAAAT+TGG + Chr7:86913592-86913611 MsG0780041129.01.T01:intron 25.0%
!! AGGAATTACCATGTTTATTT+TGG - Chr7:86912587-86912606 None:intergenic 25.0%
!! ATGAATTCAAAAGACTTTTC+AGG - Chr7:86914520-86914539 None:intergenic 25.0%
!! GAAAAGTCTTTTGAATTCAT+AGG + Chr7:86914520-86914539 MsG0780041129.01.T01:intron 25.0%
!! TATTATAGTGGAGATTTAAG+AGG + Chr7:86912403-86912422 MsG0780041129.01.T01:exon 25.0%
!! TGTTTTGTAATAATACCAGT+TGG + Chr7:86913779-86913798 MsG0780041129.01.T01:intron 25.0%
!!! AACTTTAATTTGATTGAACC+TGG - Chr7:86914426-86914445 None:intergenic 25.0%
!!! AAGAGATAAGTAGGATTTTT+TGG - Chr7:86912823-86912842 None:intergenic 25.0%
!!! GGAATTACCATGTTTATTTT+GGG - Chr7:86912586-86912605 None:intergenic 25.0%
!!! TAATACCTTTGTTGTTAACA+CGG - Chr7:86914174-86914193 None:intergenic 25.0%
AACTACCATTTGAAGAAGAA+AGG - Chr7:86915735-86915754 None:intergenic 30.0%
AACTTCTCTCAAAAGTGAAA+GGG - Chr7:86914034-86914053 None:intergenic 30.0%
ACTACCATTTGAAGAAGAAA+GGG - Chr7:86915734-86915753 None:intergenic 30.0%
AGACAAATGATCGATTAATC+CGG - Chr7:86913505-86913524 None:intergenic 30.0%
ATCGATGTATTATCTTAGAC+TGG + Chr7:86914886-86914905 MsG0780041129.01.T01:intron 30.0%
ATGGTAATAATGTATCCACA+GGG + Chr7:86916117-86916136 MsG0780041129.01.T01:exon 30.0%
ATGTGAGTAAGTAAAAACCA+CGG - Chr7:86912439-86912458 None:intergenic 30.0%
ATGTTTCCTGCAAATAGAAA+AGG + Chr7:86913638-86913657 MsG0780041129.01.T01:intron 30.0%
CAATCAAATTAAAGTTCAGC+TGG + Chr7:86914430-86914449 MsG0780041129.01.T01:intron 30.0%
CAATTTCCCTAATTTCATAC+TGG - Chr7:86913121-86913140 None:intergenic 30.0%
CTACTAAATAACCAATGACA+GGG - Chr7:86915102-86915121 None:intergenic 30.0%
GAGTACAAAATATCTTGTAC+TGG - Chr7:86915951-86915970 None:intergenic 30.0%
GATTTCTTCATGTTCTTACT+TGG + Chr7:86913233-86913252 MsG0780041129.01.T01:intron 30.0%
GCTTGAACTTTACATATTAC+TGG - Chr7:86914561-86914580 None:intergenic 30.0%
GGACAGTTCAAAATTAAAGA+GGG + Chr7:86915631-86915650 MsG0780041129.01.T01:CDS 30.0%
GTATGAAATTAGGGAAATTG+AGG + Chr7:86913121-86913140 MsG0780041129.01.T01:CDS 30.0%
GTTGAAATGGAAGAGAAAAT+GGG - Chr7:86915786-86915805 None:intergenic 30.0%
GTTTAACTGCCATAATTGAA+AGG - Chr7:86914320-86914339 None:intergenic 30.0%
TAAATCCTTAACGCAATCTA+GGG + Chr7:86915678-86915697 MsG0780041129.01.T01:intron 30.0%
TAACTTCTCTCAAAAGTGAA+AGG - Chr7:86914035-86914054 None:intergenic 30.0%
TAGATACAACTCTCACAAAT+TGG - Chr7:86912327-86912346 None:intergenic 30.0%
TATGGTAATAATGTATCCAC+AGG + Chr7:86916116-86916135 MsG0780041129.01.T01:exon 30.0%
TGATTCTTACTGGTAAAAAC+AGG - Chr7:86914119-86914138 None:intergenic 30.0%
TGTATTACTACCTTACCAAA+AGG - Chr7:86913936-86913955 None:intergenic 30.0%
TGTTTCCTGCAAATAGAAAA+GGG + Chr7:86913639-86913658 MsG0780041129.01.T01:intron 30.0%
TTAAACAACTTAAACTACCC+TGG + Chr7:86914456-86914475 MsG0780041129.01.T01:intron 30.0%
TTAAATCCTTAACGCAATCT+AGG + Chr7:86915677-86915696 MsG0780041129.01.T01:intron 30.0%
TTGAAATGGAAGAGAAAATG+GGG - Chr7:86915785-86915804 None:intergenic 30.0%
TTTACTTACTCACATTGAGA+AGG + Chr7:86912444-86912463 MsG0780041129.01.T01:exon 30.0%
! AGTTCAAAGTTCTAACTAGA+AGG + Chr7:86913093-86913112 MsG0780041129.01.T01:CDS 30.0%
! GTTCAAAGTTCTAACTAGAA+GGG + Chr7:86913094-86913113 MsG0780041129.01.T01:CDS 30.0%
!! AATACCTTTGTTGTTAACAC+GGG - Chr7:86914173-86914192 None:intergenic 30.0%
!! CTTTTGATGGTAGAATACAA+CGG + Chr7:86914070-86914089 MsG0780041129.01.T01:intron 30.0%
!! TGAAGTTATTTAGGGTCTTT+TGG + Chr7:86913689-86913708 MsG0780041129.01.T01:intron 30.0%
!!! GTGTGTGTGTTTTATTTTTC+AGG + Chr7:86915443-86915462 MsG0780041129.01.T01:intron 30.0%
AAAAATGCAGGAATGTAGCT+CGG - Chr7:86913967-86913986 None:intergenic 35.0%
AAAACAGCAACACAACTTTG+AGG - Chr7:86913736-86913755 None:intergenic 35.0%
AAACAGCAACACAACTTTGA+GGG - Chr7:86913735-86913754 None:intergenic 35.0%
AAAGACTCGATGAATCATGT+AGG - Chr7:86915415-86915434 None:intergenic 35.0%
AAATCCTTAACGCAATCTAG+GGG + Chr7:86915679-86915698 MsG0780041129.01.T01:intron 35.0%
AACTTCAGTAGAAATTGCAC+AGG + Chr7:86915654-86915673 MsG0780041129.01.T01:CDS 35.0%
AAGGGACCAGTATGAAATTA+GGG + Chr7:86913112-86913131 MsG0780041129.01.T01:CDS 35.0%
ACAAATGATCGATTAATCCG+GGG - Chr7:86913503-86913522 None:intergenic 35.0%
ACCAGTAAGAATCAATCTGA+CGG + Chr7:86914125-86914144 MsG0780041129.01.T01:CDS 35.0%
ACTCAAAATAGGCACTTTAG+CGG - Chr7:86912510-86912529 None:intergenic 35.0%
ACTTCTCTCAAAAGTGAAAG+GGG - Chr7:86914033-86914052 None:intergenic 35.0%
AGAGAAGCCATGAAAAATGA+CGG + Chr7:86915610-86915629 MsG0780041129.01.T01:CDS 35.0%
AGTACCTCGAAACTGTATAT+TGG - Chr7:86915865-86915884 None:intergenic 35.0%
ATAATTGGACGAAGTTCATG+TGG - Chr7:86915347-86915366 None:intergenic 35.0%
ATAGAAAAGGGAGATTAGAG+AGG + Chr7:86913651-86913670 MsG0780041129.01.T01:intron 35.0%
ATCAAAAGTTTATAACCCCC+AGG + Chr7:86913327-86913346 MsG0780041129.01.T01:intron 35.0%
ATTGTCACAGAGGAATCTTT+AGG - Chr7:86914976-86914995 None:intergenic 35.0%
CAAAACCTGATTCAGTACAA+AGG - Chr7:86915552-86915571 None:intergenic 35.0%
CAGCTTGACAAAATATTCCA+GGG - Chr7:86914476-86914495 None:intergenic 35.0%
CATGTAATTGGGATAGAACA+TGG - Chr7:86914649-86914668 None:intergenic 35.0%
CCTACTAAATAACCAATGAC+AGG - Chr7:86915103-86915122 None:intergenic 35.0%
CGGACAGTTCAAAATTAAAG+AGG + Chr7:86915630-86915649 MsG0780041129.01.T01:CDS 35.0%
CGTTGAAATGGAAGAGAAAA+TGG - Chr7:86915787-86915806 None:intergenic 35.0%
CTGCAAAGAAAATCAAGTCA+AGG - Chr7:86913824-86913843 None:intergenic 35.0%
GACAAATGATCGATTAATCC+GGG - Chr7:86913504-86913523 None:intergenic 35.0%
GGATTAATCGATCATTTGTC+TGG + Chr7:86913504-86913523 MsG0780041129.01.T01:intron 35.0%
GTTTGTGTGTGTATTGAGTA+TGG + Chr7:86916098-86916117 MsG0780041129.01.T01:exon 35.0%
TAATTGGACGAAGTTCATGT+GGG - Chr7:86915346-86915365 None:intergenic 35.0%
TAGAAAAGGGAGATTAGAGA+GGG + Chr7:86913652-86913671 MsG0780041129.01.T01:intron 35.0%
TAGGAGATATTTCTTGAGCT+TGG + Chr7:86914718-86914737 MsG0780041129.01.T01:intron 35.0%
TCAAAAGTTTATAACCCCCA+GGG + Chr7:86913328-86913347 MsG0780041129.01.T01:intron 35.0%
TCAAGGTAGATGAGATTGAT+AGG - Chr7:86913807-86913826 None:intergenic 35.0%
TCAGCTTGACAAAATATTCC+AGG - Chr7:86914477-86914496 None:intergenic 35.0%
TCCACATAGAGCTTTCAATT+GGG + Chr7:86913450-86913469 MsG0780041129.01.T01:intron 35.0%
TGAAATGGAAGAGAAAATGG+GGG - Chr7:86915784-86915803 None:intergenic 35.0%
TGGTTATTTAGTAGGCGTAT+TGG + Chr7:86915108-86915127 MsG0780041129.01.T01:intron 35.0%
TGTGAGTAAGTAAAAACCAC+GGG - Chr7:86912438-86912457 None:intergenic 35.0%
TTCCTCTGTGACAATTAAAG+AGG + Chr7:86914981-86915000 MsG0780041129.01.T01:CDS 35.0%
TTTGAGCTTTCTTGTAGTTC+CGG + Chr7:86913055-86913074 MsG0780041129.01.T01:intron 35.0%
TTTGCCAATATACAGTTTCG+AGG + Chr7:86915858-86915877 MsG0780041129.01.T01:exon 35.0%
TTTGTCATGCCTTCAAAGTA+CGG + Chr7:86914934-86914953 MsG0780041129.01.T01:CDS 35.0%
! AAATTTCATTGGGTTGCTGT+TGG + Chr7:86913988-86914007 MsG0780041129.01.T01:intron 35.0%
! AATCTCCCTTTTCTATTTGC+AGG - Chr7:86913647-86913666 None:intergenic 35.0%
! CCTGTCATTGGTTATTTAGT+AGG + Chr7:86915100-86915119 MsG0780041129.01.T01:intron 35.0%
! GTACGGCTTTCAAATCTTTT+TGG - Chr7:86912942-86912961 None:intergenic 35.0%
! TCTGATTCATGATAACGAAC+AGG - Chr7:86915926-86915945 None:intergenic 35.0%
! TTTCATTTTGTCCCTGTCAT+TGG + Chr7:86915088-86915107 MsG0780041129.01.T01:intron 35.0%
! TTTTCTCTCACACTCTTATG+AGG - Chr7:86912294-86912313 None:intergenic 35.0%
!! AACCACAGCAACTATTTTTC+TGG - Chr7:86915010-86915029 None:intergenic 35.0%
!! AATTGAATGTGCTTGGTGTT+GGG - Chr7:86912563-86912582 None:intergenic 35.0%
!! GATGTGTGTTGTTCTTTTGA+TGG + Chr7:86914057-86914076 MsG0780041129.01.T01:intron 35.0%
!! TTTTGGGAATTGAATGTGCT+TGG - Chr7:86912570-86912589 None:intergenic 35.0%
!!! AAGTGCCTATTTTGAGTTCA+CGG + Chr7:86912513-86912532 MsG0780041129.01.T01:exon 35.0%
!!! GTGTTGCTGTTTTATAATCG+AGG + Chr7:86913743-86913762 MsG0780041129.01.T01:intron 35.0%
AAACCAAACTTCACGAATCC+AGG + Chr7:86914405-86914424 MsG0780041129.01.T01:intron 40.0%
AACTCCCGTGTTAACAACAA+AGG + Chr7:86914166-86914185 MsG0780041129.01.T01:CDS 40.0%
AAGTTAGCACCGTACTTTGA+AGG - Chr7:86914946-86914965 None:intergenic 40.0%
AATTGGACGAAGTTCATGTG+GGG - Chr7:86915345-86915364 None:intergenic 40.0%
ACATAGTTATGTCCACCTGA+GGG + Chr7:86912358-86912377 MsG0780041129.01.T01:exon 40.0%
ACCTGATTCAGTACAAAGGA+AGG - Chr7:86915548-86915567 None:intergenic 40.0%
AGAAAAGGGAGATTAGAGAG+GGG + Chr7:86913653-86913672 MsG0780041129.01.T01:intron 40.0%
AGACTGGAGATAAAGATGAG+TGG + Chr7:86914902-86914921 MsG0780041129.01.T01:intron 40.0%
AGCACAGATAACACACAGAT+TGG + Chr7:86915178-86915197 MsG0780041129.01.T01:intron 40.0%
ATTGAAAGCTCTATGTGGAC+TGG - Chr7:86913449-86913468 None:intergenic 40.0%
CAAAAGTTTATAACCCCCAG+GGG + Chr7:86913329-86913348 MsG0780041129.01.T01:intron 40.0%
CAAACATCAACGTTGAGTAC+AGG - Chr7:86916014-86916033 None:intergenic 40.0%
CAAATGATCGATTAATCCGG+GGG - Chr7:86913502-86913521 None:intergenic 40.0%
CAATCAACCTCGATTCATCA+TGG + Chr7:86912631-86912650 MsG0780041129.01.T01:exon 40.0%
CACCTCTTTAATTGTCACAG+AGG - Chr7:86914986-86915005 None:intergenic 40.0%
CAGTAAGAATCAATCTGACG+GGG + Chr7:86914127-86914146 MsG0780041129.01.T01:CDS 40.0%
CAGTCATTTAATGTCCTTGC+CGG + Chr7:86913907-86913926 MsG0780041129.01.T01:CDS 40.0%
CCAAACTGCAAACTAATCTC+TGG - Chr7:86914592-86914611 None:intergenic 40.0%
CCAGTAAGAATCAATCTGAC+GGG + Chr7:86914126-86914145 MsG0780041129.01.T01:CDS 40.0%
CCTCCAATGCAATCTCATTA+CGG - Chr7:86915810-86915829 None:intergenic 40.0%
CGATCCCTTTCTTCTTCAAA+TGG + Chr7:86915727-86915746 MsG0780041129.01.T01:intron 40.0%
CTCTGTGACAATTAAAGAGG+TGG + Chr7:86914984-86915003 MsG0780041129.01.T01:CDS 40.0%
CTTTGAACTTGACAGTCTCA+AGG - Chr7:86913082-86913101 None:intergenic 40.0%
GAAATACAAGGGTTGCAAAG+AGG - Chr7:86912607-86912626 None:intergenic 40.0%
GAAGGGACCAGTATGAAATT+AGG + Chr7:86913111-86913130 MsG0780041129.01.T01:CDS 40.0%
GAATACAAATCTTCACCCTC+AGG - Chr7:86912376-86912395 None:intergenic 40.0%
GAATACAACGGAGGAGAAAA+TGG + Chr7:86914082-86914101 MsG0780041129.01.T01:intron 40.0%
GTACTTTGCAGTCTCAGTAA+CGG - Chr7:86912913-86912932 None:intergenic 40.0%
GTAGTCTCTGCTACAAAGTA+AGG - Chr7:86913847-86913866 None:intergenic 40.0%
GTCCACATAGAGCTTTCAAT+TGG + Chr7:86913449-86913468 MsG0780041129.01.T01:intron 40.0%
TAATGAGATTGCATTGGAGG+TGG + Chr7:86915810-86915829 MsG0780041129.01.T01:exon 40.0%
TACATAGTTATGTCCACCTG+AGG + Chr7:86912357-86912376 MsG0780041129.01.T01:exon 40.0%
TCAATCTGACGGGGTTAAAA+TGG + Chr7:86914136-86914155 MsG0780041129.01.T01:CDS 40.0%
TCCTTCCTTTGTACTGAATC+AGG + Chr7:86915544-86915563 MsG0780041129.01.T01:intron 40.0%
TGAGATTGATAGGAACCAAC+TGG - Chr7:86913797-86913816 None:intergenic 40.0%
TTAACCCCTAGATTGCGTTA+AGG - Chr7:86915686-86915705 None:intergenic 40.0%
TTCTCTCAACTCTATGAGTG+AGG - Chr7:86912258-86912277 None:intergenic 40.0%
! AGGTTTTCCATGATGAATCG+AGG - Chr7:86912641-86912660 None:intergenic 40.0%
! ATCTCATTACGGCGTTGAAA+TGG - Chr7:86915799-86915818 None:intergenic 40.0%
! CTTTTGGCACATTTGGATGT+GGG + Chr7:86913705-86913724 MsG0780041129.01.T01:intron 40.0%
! TCTTTTGGCACATTTGGATG+TGG + Chr7:86913704-86913723 MsG0780041129.01.T01:intron 40.0%
! TTAGGGTCTTTTGGCACATT+TGG + Chr7:86913698-86913717 MsG0780041129.01.T01:intron 40.0%
! TTGATGGTAGAATACAACGG+AGG + Chr7:86914073-86914092 MsG0780041129.01.T01:intron 40.0%
!! CCAGAGATTAGTTTGCAGTT+TGG + Chr7:86914589-86914608 MsG0780041129.01.T01:intron 40.0%
!! CTACCTTACCAAAAGGTATC+CGG - Chr7:86913929-86913948 None:intergenic 40.0%
!! GAATTGAATGTGCTTGGTGT+TGG - Chr7:86912564-86912583 None:intergenic 40.0%
!! TTTCTTGAGCTTGGTGATGT+TGG + Chr7:86914727-86914746 MsG0780041129.01.T01:intron 40.0%
!!! CACACAACAAGTTTTTAGCG+TGG - Chr7:86912474-86912493 None:intergenic 40.0%
!!! GAACTGTCCGTCATTTTTCA+TGG - Chr7:86915620-86915639 None:intergenic 40.0%
!!! TATTTTGAGTTCACGGAGGA+GGG + Chr7:86912520-86912539 MsG0780041129.01.T01:exon 40.0%
AAATCCCATCGTCTACTAGC+GGG - Chr7:86913477-86913496 None:intergenic 45.0%
AACTTGACAGTCTCAAGGTC+CGG - Chr7:86913077-86913096 None:intergenic 45.0%
ACAGAGGAATCTTTAGGCAG+TGG - Chr7:86914970-86914989 None:intergenic 45.0%
ACGCCGTAATGAGATTGCAT+TGG + Chr7:86915804-86915823 MsG0780041129.01.T01:exon 45.0%
AGGTCTCTCTTCCTATTTGG+AGG - Chr7:86915307-86915326 None:intergenic 45.0%
ATCAAACCTAAGACGCTGAG+AGG - Chr7:86914774-86914793 None:intergenic 45.0%
CAAATCCCATCGTCTACTAG+CGG - Chr7:86913478-86913497 None:intergenic 45.0%
CCAAACTAGCCCATGGAAAT+TGG - Chr7:86914808-86914827 None:intergenic 45.0%
CCGTAATGAGATTGCATTGG+AGG + Chr7:86915807-86915826 MsG0780041129.01.T01:exon 45.0%
CTAGGGGTTAAACGTCTGTA+AGG + Chr7:86915695-86915714 MsG0780041129.01.T01:intron 45.0%
CTCCTCCGTGAACTCAAAAT+AGG - Chr7:86912521-86912540 None:intergenic 45.0%
GAACCTGGATTCGTGAAGTT+TGG - Chr7:86914411-86914430 None:intergenic 45.0%
GCCCAATTGAAAGCTCTATG+TGG - Chr7:86913454-86913473 None:intergenic 45.0%
GGCCAGAAAAATAGTTGCTG+TGG + Chr7:86915005-86915024 MsG0780041129.01.T01:CDS 45.0%
GGGCCAATAAATCCTGCTTT+GGG + Chr7:86913423-86913442 MsG0780041129.01.T01:intron 45.0%
GGTGGAGTGGAAAAACAAGT+AGG + Chr7:86915828-86915847 MsG0780041129.01.T01:exon 45.0%
GTCTTAGGTTTGATTCTCCC+CGG + Chr7:86914780-86914799 MsG0780041129.01.T01:CDS 45.0%
GTGGAGATTTAAGAGGCCTA+CGG + Chr7:86912410-86912429 MsG0780041129.01.T01:exon 45.0%
GTTGCTAGAAGATGCAGAGT+TGG - Chr7:86912686-86912705 None:intergenic 45.0%
TAAGAAGCCAAACTAGCCCA+TGG - Chr7:86914815-86914834 None:intergenic 45.0%
TACAAATCTTCACCCTCAGG+TGG - Chr7:86912373-86912392 None:intergenic 45.0%
TAGCAGAGACTACAATGCCT+GGG + Chr7:86913854-86913873 MsG0780041129.01.T01:CDS 45.0%
TCTCAACACTCTGCGTGTTA+AGG - Chr7:86912221-86912240 None:intergenic 45.0%
TGAACGCTTCTTCGAGAGTA+CGG - Chr7:86912959-86912978 None:intergenic 45.0%
TGCAGGTCTCTCTTCCTATT+TGG - Chr7:86915310-86915329 None:intergenic 45.0%
TGGAGATTTAAGAGGCCTAC+GGG + Chr7:86912411-86912430 MsG0780041129.01.T01:exon 45.0%
TGGCCCAAAGCAGGATTTAT+TGG - Chr7:86913429-86913448 None:intergenic 45.0%
TGTTACAGCCGTACACTTAC+AGG - Chr7:86913266-86913285 None:intergenic 45.0%
! AAGAGTGGGTTCGATTTCAG+TGG + Chr7:86913877-86913896 MsG0780041129.01.T01:CDS 45.0%
! CCCGTCAGATTGATTCTTAC+TGG - Chr7:86914129-86914148 None:intergenic 45.0%
! CTGTTGGTTGCTGCATATCT+TGG + Chr7:86914004-86914023 MsG0780041129.01.T01:intron 45.0%
! GTTGCTGTGGTTTCCTTTTC+AGG + Chr7:86915018-86915037 MsG0780041129.01.T01:CDS 45.0%
! TTGCCGGATACCTTTTGGTA+AGG + Chr7:86913923-86913942 MsG0780041129.01.T01:intron 45.0%
!! CCAATTTCCATGGGCTAGTT+TGG + Chr7:86914805-86914824 MsG0780041129.01.T01:intron 45.0%
!! GAGCTTGGTGATGTTGGTTT+GGG + Chr7:86914733-86914752 MsG0780041129.01.T01:intron 45.0%
!! TGAGCTTGGTGATGTTGGTT+TGG + Chr7:86914732-86914751 MsG0780041129.01.T01:intron 45.0%
!! TTACCAAAAGGTATCCGGCA+AGG - Chr7:86913924-86913943 None:intergenic 45.0%
!!! CTATTTTGAGTTCACGGAGG+AGG + Chr7:86912519-86912538 MsG0780041129.01.T01:exon 45.0%
!!! TGCCTATTTTGAGTTCACGG+AGG + Chr7:86912516-86912535 MsG0780041129.01.T01:exon 45.0%
!! ATTATTGAAAAATAAATATT+AGG - Chr7:86914355-86914374 None:intergenic 5.0%
AAATCGAACCCACTCTTCCC+AGG - Chr7:86913874-86913893 None:intergenic 50.0%
AAGCAGGATTTATTGGCCCC+TGG - Chr7:86913422-86913441 None:intergenic 50.0%
AATCCCATCGTCTACTAGCG+GGG - Chr7:86913476-86913495 None:intergenic 50.0%
ACGGAGGAGGGAAATTATGC+AGG + Chr7:86912532-86912551 MsG0780041129.01.T01:exon 50.0%
ACTACAATGCCTGGGAAGAG+TGG + Chr7:86913862-86913881 MsG0780041129.01.T01:CDS 50.0%
AGATTGCATTGGAGGTGGAG+TGG + Chr7:86915815-86915834 MsG0780041129.01.T01:exon 50.0%
AGCAGGATTTATTGGCCCCT+GGG - Chr7:86913421-86913440 None:intergenic 50.0%
AGTTTATAACCCCCAGGGGT+TGG + Chr7:86913333-86913352 MsG0780041129.01.T01:intron 50.0%
ATGCTGACATGGTTCTTCGC+TGG - Chr7:86912720-86912739 None:intergenic 50.0%
CCATGTGCGAACCTCCAAAT+AGG + Chr7:86915293-86915312 MsG0780041129.01.T01:intron 50.0%
CCTATTTGGAGGTTCGCACA+TGG - Chr7:86915296-86915315 None:intergenic 50.0%
CTACAATGCCTGGGAAGAGT+GGG + Chr7:86913863-86913882 MsG0780041129.01.T01:CDS 50.0%
CTGAGACATGAGCACTTCCT+AGG - Chr7:86913388-86913407 None:intergenic 50.0%
GGCATGTGCCTGTAAGTGTA+CGG + Chr7:86913255-86913274 MsG0780041129.01.T01:intron 50.0%
GGGGCCAATAAATCCTGCTT+TGG + Chr7:86913422-86913441 MsG0780041129.01.T01:intron 50.0%
GGTCTCAAGTCTTCACCACA+AGG - Chr7:86913367-86913386 None:intergenic 50.0%
GTAGCAGAGACTACAATGCC+TGG + Chr7:86913853-86913872 MsG0780041129.01.T01:CDS 50.0%
GTGGTGAAGACTTGAGACCT+AGG + Chr7:86913368-86913387 MsG0780041129.01.T01:intron 50.0%
TAGCCCATGGAAATTGGCAC+CGG - Chr7:86914802-86914821 None:intergenic 50.0%
TCGAGCTTCGAATGCTGACA+TGG - Chr7:86912731-86912750 None:intergenic 50.0%
TCTCAGGTTCGAATCTCCCA+GGG + Chr7:86913402-86913421 MsG0780041129.01.T01:intron 50.0%
TGCAGTCTCAGTAACGGCAT+CGG - Chr7:86912907-86912926 None:intergenic 50.0%
TGCTGACATGGTTCTTCGCT+GGG - Chr7:86912719-86912738 None:intergenic 50.0%
TTTACGTCGCTGTGAGAGAG+AGG - Chr7:86912788-86912807 None:intergenic 50.0%
! AGGCAAGAGCACACCTGAAA+AGG - Chr7:86915034-86915053 None:intergenic 50.0%
! TGTCCTTGCCGGATACCTTT+TGG + Chr7:86913918-86913937 MsG0780041129.01.T01:CDS 50.0%
!! CTAGGAAGTGCTCATGTCTC+AGG + Chr7:86913386-86913405 MsG0780041129.01.T01:intron 50.0%
!! CTCGAAGAAGCGTTCATGAC+AGG + Chr7:86912963-86912982 MsG0780041129.01.T01:CDS 50.0%
AGACGATGGGATTTGTCCCC+CGG + Chr7:86913483-86913502 MsG0780041129.01.T01:intron 55.0%
AGCCCATGGAAATTGGCACC+GGG - Chr7:86914801-86914820 None:intergenic 55.0%
CTCAGGTTCGAATCTCCCAG+GGG + Chr7:86913403-86913422 MsG0780041129.01.T01:intron 55.0%
GTAAAAACCACGGGACCCGT+AGG - Chr7:86912429-86912448 None:intergenic 55.0%
GTCTCAGGTTCGAATCTCCC+AGG + Chr7:86913401-86913420 MsG0780041129.01.T01:intron 55.0%
TGGGGCTCACTGAATCATGC+AGG - Chr7:86915327-86915346 None:intergenic 55.0%
! TATAACCCCCAGGGGTTGGT+TGG + Chr7:86913337-86913356 MsG0780041129.01.T01:intron 55.0%
! TCCCCGGTGCCAATTTCCAT+GGG + Chr7:86914796-86914815 MsG0780041129.01.T01:CDS 55.0%
!! TATGTGGACTGGCCCAAAGC+AGG - Chr7:86913438-86913457 None:intergenic 55.0%
AAGGCCAACCAACCAACCCC+TGG - Chr7:86913348-86913367 None:intergenic 60.0%
ACGTCGCTGTGAGAGAGAGG+TGG - Chr7:86912785-86912804 None:intergenic 60.0%
AGGCCAACCAACCAACCCCT+GGG - Chr7:86913347-86913366 None:intergenic 60.0%
GCCCATGGAAATTGGCACCG+GGG - Chr7:86914800-86914819 None:intergenic 60.0%
TGCGCTCCTCTCAGCGTCTT+AGG + Chr7:86914765-86914784 MsG0780041129.01.T01:CDS 60.0%
! CTCCCCGGTGCCAATTTCCA+TGG + Chr7:86914795-86914814 MsG0780041129.01.T01:CDS 60.0%
!! GGGTTGGTTGGTTGGCCTTG+TGG + Chr7:86913349-86913368 MsG0780041129.01.T01:intron 60.0%
GCCAACCAACCAACCCCTGG+GGG - Chr7:86913345-86913364 None:intergenic 65.0%
GGCCAACCAACCAACCCCTG+GGG - Chr7:86913346-86913365 None:intergenic 65.0%
GGGCCCCGCTAGTAGACGAT+GGG + Chr7:86913470-86913489 MsG0780041129.01.T01:intron 65.0%
TAAGAGGCCTACGGGTCCCG+TGG + Chr7:86912419-86912438 MsG0780041129.01.T01:exon 65.0%
TGGGCCCCGCTAGTAGACGA+TGG + Chr7:86913469-86913488 MsG0780041129.01.T01:intron 65.0%
! GCTGAGAGGAGCGCACTGCA+AGG - Chr7:86914760-86914779 None:intergenic 65.0%
!! ACCCCCAGGGGTTGGTTGGT+TGG + Chr7:86913341-86913360 MsG0780041129.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 86912199 86916141 86912199 ID=MsG0780041129.01;
Chr7 mRNA 86912199 86916141 86912199 ID=MsG0780041129.01.T01;Parent=MsG0780041129.01
Chr7 exon 86912199 86912802 86912199 ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7 CDS 86912730 86912802 86912730 ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7 CDS 86912898 86912984 86912898 ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7 exon 86912898 86912984 86912898 ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7 CDS 86913072 86913142 86913072 ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7 exon 86913072 86913142 86913072 ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7 CDS 86913844 86913939 86913844 ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7 exon 86913844 86913939 86913844 ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7 CDS 86914083 86914187 86914083 ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7 exon 86914083 86914187 86914083 ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7 CDS 86914765 86914821 86914765 ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7 exon 86914765 86914821 86914765 ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7 CDS 86914904 86915039 86914904 ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7 exon 86914904 86915039 86914904 ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7 CDS 86915566 86915675 86915566 ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7 exon 86915566 86915675 86915566 ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Chr7 CDS 86915775 86915849 86915775 ID=MsG0780041129.01.T01.cds;Parent=MsG0780041129.01.T01
Chr7 exon 86915775 86916141 86915775 ID=MsG0780041129.01.T01.exon;Parent=MsG0780041129.01.T01
Gene Sequence

>MsG0780041129.01.T01

ATGTCAGCATTCGAAGCTCGAATCTCACTCATTTTCGCTCTCGCTTCTCAATCCACCTCTCTCTCACAGCGACTTGTTGCCGATGCCGTTACTGAGACTGCAAAGTACTTGTTTCCAAAAAGATTTGAAAGCCGTACTCTCGAAGAAGCGTTCATGACAGTTCCGGACCTTGAGACTGTCAAGTTCAAAGTTCTAACTAGAAGGGACCAGTATGAAATTAGGGAAATTGAGCCTTACTTTGTAGCAGAGACTACAATGCCTGGGAAGAGTGGGTTCGATTTCAGTGGTTCTTCTCAGTCATTTAATGTCCTTGCCGGATACCTTTTGAATACAACGGAGGAGAAAATGGAGATGACTACACCTGTTTTTACCAGTAAGAATCAATCTGACGGGGTTAAAATGGATATGACAACTCCCGTGTTAACAACAAAGTGCGCTCCTCTCAGCGTCTTAGGTTTGATTCTCCCCGGTGCCAATTTCCATGGGCTAACTGGAGATAAAGATGAGTGGAAAATGTCTTTTGTCATGCCTTCAAAGTACGGTGCTAACTTGCCACTGCCTAAAGATTCCTCTGTGACAATTAAAGAGGTGGCCAGAAAAATAGTTGCTGTGGTTTCCTTTTCAGGTTTTGTAAATGATGAAGAAGTTAAGAGGCGTGAATCGAAACTAAGAGAAGCCATGAAAAATGACGGACAGTTCAAAATTAAAGAGGGAACTTCAGTAGAAATTGCACAGTATAATCCCCCATTTTCTCTTCCATTTCAACGCCGTAATGAGATTGCATTGGAGGTGGAGTGGAAAAACAAGTAG

Protein sequence

>MsG0780041129.01.T01

MSAFEARISLIFALASQSTSLSQRLVADAVTETAKYLFPKRFESRTLEEAFMTVPDLETVKFKVLTRRDQYEIREIEPYFVAETTMPGKSGFDFSGSSQSFNVLAGYLLNTTEEKMEMTTPVFTSKNQSDGVKMDMTTPVLTTKCAPLSVLGLILPGANFHGLTGDKDEWKMSFVMPSKYGANLPLPKDSSVTIKEVARKIVAVVSFSGFVNDEEVKRRESKLREAMKNDGQFKIKEGTSVEIAQYNPPFSLPFQRRNEIALEVEWKNK*