AlfalfaGEDB | MsG0680034513.01

M. sativa cultivar ZhongmuNo.1 / MsG0680034513.01

KEGG: K01209
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034513.01.T01	XP_039683472.1	70.4	250	29	3	13	229	269	506	1.99E-108	340

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034513.01.T01	Q9SG80	50.554	271	66	6	13	229	267	523	4.74E-75	243

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034513.01.T01	G7L3P9	65.799	269	32	4	13	229	269	529	2.75e-105	332

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180006096.01	MsG0680034513.01	0.801244	9.865883e-49	4.688770e-46
MsG0680034508.01	MsG0680034513.01	0.878619	2.424544e-69	1.274726e-65
MsG0680034513.01	MsG0880046620.01	0.800215	1.599820e-48	7.407244e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034513.01.T01	MTR_7g087890	65.799	269	32	4	13	229	269	529	6.98e-109	332
MsG0680034513.01.T01	MTR_0176s0070	65.556	270	33	4	12	229	259	520	1.12e-108	327
MsG0680034513.01.T01	MTR_7g087960	67.194	253	38	3	13	232	252	492	6.39e-106	320
MsG0680034513.01.T01	MTR_7g088410	50.172	291	76	6	13	249	261	536	9.46e-84	263
MsG0680034513.01.T01	MTR_7g087880	67.553	188	30	3	61	229	33	208	1.98e-75	233
MsG0680034513.01.T01	MTR_6g025790	50.195	257	80	5	13	232	271	516	7.35e-75	240
MsG0680034513.01.T01	MTR_6g025730	50.391	256	80	4	13	232	271	515	2.85e-74	238
MsG0680034513.01.T01	MTR_7g088470	49.451	273	68	6	13	229	258	516	1.59e-72	235
MsG0680034513.01.T01	MTR_2g090585	53.219	233	65	3	20	219	254	475	2.93e-71	229
MsG0680034513.01.T01	MTR_7g088440	48.760	242	78	4	13	219	256	486	7.33e-69	224

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034513.01.T01	AT3G10740	50.554	271	66	6	13	229	267	523	4.83e-76	243
MsG0680034513.01.T01	AT3G10740	50.554	271	66	6	13	229	267	523	4.83e-76	243
MsG0680034513.01.T01	AT3G10740	50.554	271	66	6	13	229	286	542	6.82e-76	243
MsG0680034513.01.T01	AT3G10740	50.554	271	66	6	13	229	286	542	6.82e-76	243
MsG0680034513.01.T01	AT5G26120	47.955	269	76	4	13	229	266	522	2.77e-71	231

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Find 54 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAATAAAATAAATAA+TGG	0.377913	6:-89194533	MsG0680034513.01.T01:intron
AACTATTTGTTTGAATTGAG+TGG	0.502526	6:-89192541	MsG0680034513.01.T01:CDS
AATCTCAAATCAAATGGCTC+AGG	0.516202	6:+89193629	None:intergenic
AATTAATAGGAAGCCCTAGA+TGG	0.466015	6:-89193716	MsG0680034513.01.T01:intron
AATTCCATATGTCATTAAAG+TGG	0.524694	6:+89193854	None:intergenic
AGCAAACTCAATACCATCTA+GGG	0.520562	6:+89193703	None:intergenic
AGGTTCTTCCACATCACGAT+GGG	0.504375	6:-89193678	MsG0680034513.01.T01:CDS
AGTTTAGCATTTGTTTCAGA+TGG	0.461114	6:-89192486	MsG0680034513.01.T01:CDS
ATAGGTGGTTGTTATGTAGA+AGG	0.380248	6:-89193940	MsG0680034513.01.T01:intron
ATCACAATCTTCATTTCCAA+TGG	0.500454	6:+89193601	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTTAGCATTTGTTTCAGA+TGG	-	Chr6:89194542-89194561	MsG0680034513.01.T01:CDS	30.0%
ATCACAATCTTCATTTCCAA+TGG	+	Chr6:89193430-89193449	None:intergenic	30.0%
ATCGTTTGTGTTAAAAAGAG+TGG	+	Chr6:89194330-89194349	None:intergenic	30.0%
GCAACAAATCTCAAATCAAA+TGG	+	Chr6:89193408-89193427	None:intergenic	30.0%
TAAAATATGGTCTCTTTGGT+AGG	-	Chr6:89192547-89192566	MsG0680034513.01.T01:CDS	30.0%
TGAAAATCATATAGATCTGC+CGG	+	Chr6:89193696-89193715	None:intergenic	30.0%
TTATAGCTTCATAGAACTTC+AGG	+	Chr6:89193608-89193627	None:intergenic	30.0%
AATCTCAAATCAAATGGCTC+AGG	+	Chr6:89193402-89193421	None:intergenic	35.0%
AATTAATAGGAAGCCCTAGA+TGG	-	Chr6:89193312-89193331	MsG0680034513.01.T01:CDS	35.0%
AGCAAACTCAATACCATCTA+GGG	+	Chr6:89193328-89193347	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	89192480	89194570	89192480	ID=MsG0680034513.01;Name=MsG0680034513.01
Chr6	mRNA	89192480	89194570	89192480	ID=MsG0680034513.01.T01;Parent=MsG0680034513.01;Name=MsG0680034513.01.T01;_AED=0.49;_eAED=0.74;_QI=0\|0\|0\|1\|0.5\|0.28\|7\|0\|255
Chr6	exon	89194534	89194570	89194534	ID=MsG0680034513.01.T01:exon:26792;Parent=MsG0680034513.01.T01
Chr6	exon	89193813	89193958	89193813	ID=MsG0680034513.01.T01:exon:26791;Parent=MsG0680034513.01.T01
Chr6	exon	89193585	89193729	89193585	ID=MsG0680034513.01.T01:exon:26790;Parent=MsG0680034513.01.T01
Chr6	exon	89193287	89193452	89193287	ID=MsG0680034513.01.T01:exon:26789;Parent=MsG0680034513.01.T01
Chr6	exon	89193135	89193206	89193135	ID=MsG0680034513.01.T01:exon:26788;Parent=MsG0680034513.01.T01
Chr6	exon	89192922	89193014	89192922	ID=MsG0680034513.01.T01:exon:26787;Parent=MsG0680034513.01.T01
Chr6	exon	89192480	89192588	89192480	ID=MsG0680034513.01.T01:exon:26786;Parent=MsG0680034513.01.T01
Chr6	CDS	89194534	89194570	89194534	ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01
Chr6	CDS	89193813	89193958	89193813	ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01
Chr6	CDS	89193585	89193729	89193585	ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01
Chr6	CDS	89193287	89193452	89193287	ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01
Chr6	CDS	89193135	89193206	89193135	ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01
Chr6	CDS	89192922	89193014	89192922	ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01
Chr6	CDS	89192480	89192588	89192480	ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01

Gene Sequence

>MsG0680034513.01.T01

ATGTTAACTTTCATGAAAAGAAATAAAATAAATAATGGTGGTTGTTATGTAGAAGGAGATTATCCGAGAAATGCTTTTAGGTGGAAAGATACAGTTGGACCATGGGAAGAGAGACCTGGCCACTTTAATGACATATGGAATTATTGGACTGATGATGGATTTGGTTATTTTGAGGGGCTTCAAGAAGCCCTAGATGGTATTGAGTTTGCTAGAGGTTCTTCCACATCACGATGGGGTTCTCTAAGAGCTTTCATGGGACATCCTGAGCCATTTGATTTGAGATTTGTTGCCATTGGAAATGAAGATTGTGATAAATATAACTATCTAGGAAACTACCTGAAGTTCTATGAAGCTATAAAACACACTTATCCTGATATTCAAATTATCTCAAATTGTGATGGTTCCAAACATCAATTAGATCACCCGGCAGATCTATATGATTTTCATGTAATACTCATATATTTTTTTAATTATTTTTGTTACCAATTTAAAAAATTCATACAGATTCTATGGACATGTTTTCCAATTATACCAAATTCGATAACGCACCAAGATCCGGTTCAAAGTGAGTATGCTGTTTGGAAGGAAGATGCTGGTGCTGCAAGCCTTTACGCAGCTGTTGCTGAAGCTGCATTCCTCATTGGGCTTGAAAAGAATAGGTGGATACTAGATGCAATTGTTTTTAACTATTTGTTTGAATTGAGTGGACTCTACCCTTTCTTCACTACTGCATTCATCCAGTTTAGCATTTGTTTCAGATGGATTTGA

Protein sequence

>MsG0680034513.01.T01

MLTFMKRNKINNGGCYVEGDYPRNAFRWKDTVGPWEERPGHFNDIWNYWTDDGFGYFEGLQEALDGIEFARGSSTSRWGSLRAFMGHPEPFDLRFVAIGNEDCDKYNYLGNYLKFYEAIKHTYPDIQIISNCDGSKHQLDHPADLYDFHVILIYFFNYFCYQFKKFIQILWTCFPIIPNSITHQDPVQSEYAVWKEDAGAASLYAAVAEAAFLIGLEKNRWILDAIVFNYLFELSGLYPFFTTAFIQFSICFRWI*