Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034513.01.T01 | XP_039683472.1 | 70.4 | 250 | 29 | 3 | 13 | 229 | 269 | 506 | 1.99E-108 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034513.01.T01 | Q9SG80 | 50.554 | 271 | 66 | 6 | 13 | 229 | 267 | 523 | 4.74E-75 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034513.01.T01 | G7L3P9 | 65.799 | 269 | 32 | 4 | 13 | 229 | 269 | 529 | 2.75e-105 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180006096.01 | MsG0680034513.01 | 0.801244 | 9.865883e-49 | 4.688770e-46 |
| MsG0680034508.01 | MsG0680034513.01 | 0.878619 | 2.424544e-69 | 1.274726e-65 |
| MsG0680034513.01 | MsG0880046620.01 | 0.800215 | 1.599820e-48 | 7.407244e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034513.01.T01 | MTR_7g087890 | 65.799 | 269 | 32 | 4 | 13 | 229 | 269 | 529 | 6.98e-109 | 332 |
| MsG0680034513.01.T01 | MTR_0176s0070 | 65.556 | 270 | 33 | 4 | 12 | 229 | 259 | 520 | 1.12e-108 | 327 |
| MsG0680034513.01.T01 | MTR_7g087960 | 67.194 | 253 | 38 | 3 | 13 | 232 | 252 | 492 | 6.39e-106 | 320 |
| MsG0680034513.01.T01 | MTR_7g088410 | 50.172 | 291 | 76 | 6 | 13 | 249 | 261 | 536 | 9.46e-84 | 263 |
| MsG0680034513.01.T01 | MTR_7g087880 | 67.553 | 188 | 30 | 3 | 61 | 229 | 33 | 208 | 1.98e-75 | 233 |
| MsG0680034513.01.T01 | MTR_6g025790 | 50.195 | 257 | 80 | 5 | 13 | 232 | 271 | 516 | 7.35e-75 | 240 |
| MsG0680034513.01.T01 | MTR_6g025730 | 50.391 | 256 | 80 | 4 | 13 | 232 | 271 | 515 | 2.85e-74 | 238 |
| MsG0680034513.01.T01 | MTR_7g088470 | 49.451 | 273 | 68 | 6 | 13 | 229 | 258 | 516 | 1.59e-72 | 235 |
| MsG0680034513.01.T01 | MTR_2g090585 | 53.219 | 233 | 65 | 3 | 20 | 219 | 254 | 475 | 2.93e-71 | 229 |
| MsG0680034513.01.T01 | MTR_7g088440 | 48.760 | 242 | 78 | 4 | 13 | 219 | 256 | 486 | 7.33e-69 | 224 |
| MsG0680034513.01.T01 | MTR_7g088420 | 47.718 | 241 | 82 | 5 | 13 | 219 | 256 | 486 | 9.04e-65 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034513.01.T01 | AT3G10740 | 50.554 | 271 | 66 | 6 | 13 | 229 | 267 | 523 | 4.83e-76 | 243 |
| MsG0680034513.01.T01 | AT3G10740 | 50.554 | 271 | 66 | 6 | 13 | 229 | 267 | 523 | 4.83e-76 | 243 |
| MsG0680034513.01.T01 | AT3G10740 | 50.554 | 271 | 66 | 6 | 13 | 229 | 286 | 542 | 6.82e-76 | 243 |
| MsG0680034513.01.T01 | AT3G10740 | 50.554 | 271 | 66 | 6 | 13 | 229 | 286 | 542 | 6.82e-76 | 243 |
| MsG0680034513.01.T01 | AT5G26120 | 47.955 | 269 | 76 | 4 | 13 | 229 | 266 | 522 | 2.77e-71 | 231 |
Find 54 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATGACATATGGAATTAT+TGG | 0.165711 | 6:-89193849 | MsG0680034513.01.T01:CDS |
| TCTTGGTGCGTTATCGAATT+TGG | 0.245864 | 6:+89193147 | None:intergenic |
| TTTGAGATAATTTGAATATC+AGG | 0.250619 | 6:+89193389 | None:intergenic |
| CTGAAGCTGCATTCCTCATT+GGG | 0.279909 | 6:-89192936 | MsG0680034513.01.T01:CDS |
| TTAGATTCATACAGATTCTA+TGG | 0.280184 | 6:-89193188 | MsG0680034513.01.T01:intron |
| GTTATCGAATTTGGTATAAT+TGG | 0.282371 | 6:+89193156 | None:intergenic |
| GCTGAAGCTGCATTCCTCAT+TGG | 0.305021 | 6:-89192937 | MsG0680034513.01.T01:CDS |
| ATCTGAAACAAATGCTAAAC+TGG | 0.311367 | 6:+89192488 | None:intergenic |
| TTATAGCTTCATAGAACTTC+AGG | 0.324367 | 6:+89193423 | None:intergenic |
| GGGTTCTCTAAGAGCTTTCA+TGG | 0.350201 | 6:-89193657 | MsG0680034513.01.T01:CDS |
| CAAACCTTTGAACCGGATCT+TGG | 0.376344 | 6:+89193130 | None:intergenic |
| TTCCACCTAAAAGCATTTCT+CGG | 0.376346 | 6:+89193910 | None:intergenic |
| AAAAGAAATAAAATAAATAA+TGG | 0.377913 | 6:-89194533 | MsG0680034513.01.T01:intron |
| ATAGGTGGTTGTTATGTAGA+AGG | 0.380248 | 6:-89193940 | MsG0680034513.01.T01:intron |
| TATTGGACTGATGATGGATT+TGG | 0.387454 | 6:-89193832 | MsG0680034513.01.T01:CDS |
| TGTGATAAATATAACTATCT+AGG | 0.415390 | 6:-89193584 | MsG0680034513.01.T01:intron |
| TAGCAAACTCAATACCATCT+AGG | 0.416261 | 6:+89193702 | None:intergenic |
| TTCGATAACGCACCAAGATC+CGG | 0.417534 | 6:-89193142 | MsG0680034513.01.T01:CDS |
| TGGAATTATTGGACTGATGA+TGG | 0.446767 | 6:-89193838 | MsG0680034513.01.T01:CDS |
| CTGGCCACTTTAATGACATA+TGG | 0.449402 | 6:-89193858 | MsG0680034513.01.T01:CDS |
| AGTTTAGCATTTGTTTCAGA+TGG | 0.461114 | 6:-89192486 | MsG0680034513.01.T01:CDS |
| CGGGTGATCTAATTGATGTT+TGG | 0.463822 | 6:+89193355 | None:intergenic |
| AATTAATAGGAAGCCCTAGA+TGG | 0.466015 | 6:-89193716 | MsG0680034513.01.T01:intron |
| TCATTGGGCTTGAAAAGAAT+AGG | 0.469488 | 6:-89192921 | MsG0680034513.01.T01:intron |
| GCAACAAATCTCAAATCAAA+TGG | 0.471002 | 6:+89193623 | None:intergenic |
| TGAAAATCATATAGATCTGC+CGG | 0.471024 | 6:+89193335 | None:intergenic |
| GATTTGAGATTTGTTGCCAT+TGG | 0.486041 | 6:-89193617 | MsG0680034513.01.T01:CDS |
| TGAATGCAGTAGTGAAGAAA+GGG | 0.493025 | 6:+89192512 | None:intergenic |
| ATCACAATCTTCATTTCCAA+TGG | 0.500454 | 6:+89193601 | None:intergenic |
| AACTATTTGTTTGAATTGAG+TGG | 0.502526 | 6:-89192541 | MsG0680034513.01.T01:CDS |
| AGGTTCTTCCACATCACGAT+GGG | 0.504375 | 6:-89193678 | MsG0680034513.01.T01:CDS |
| CGCACCAAGATCCGGTTCAA+AGG | 0.511161 | 6:-89193134 | MsG0680034513.01.T01:intron |
| CTTCAGCAACAGCTGCGTAA+AGG | 0.512671 | 6:+89192953 | None:intergenic |
| CAAATTATCTCAAATTGTGA+TGG | 0.513149 | 6:-89193380 | MsG0680034513.01.T01:CDS |
| AATCTCAAATCAAATGGCTC+AGG | 0.516202 | 6:+89193629 | None:intergenic |
| ATGAATGCAGTAGTGAAGAA+AGG | 0.517105 | 6:+89192511 | None:intergenic |
| AGCAAACTCAATACCATCTA+GGG | 0.520562 | 6:+89193703 | None:intergenic |
| AATTCCATATGTCATTAAAG+TGG | 0.524694 | 6:+89193854 | None:intergenic |
| GAAAGATACAGTTGGACCAT+GGG | 0.528095 | 6:-89193890 | MsG0680034513.01.T01:CDS |
| TTGTTAGTGAGTATGCTGTT+TGG | 0.535711 | 6:-89192999 | MsG0680034513.01.T01:intron |
| CATATGTCATTAAAGTGGCC+AGG | 0.546800 | 6:+89193859 | None:intergenic |
| TGGCCAGGTCTCTCTTCCCA+TGG | 0.551820 | 6:+89193874 | None:intergenic |
| GATGGTATTGAGTTTGCTAG+AGG | 0.576600 | 6:-89193698 | MsG0680034513.01.T01:CDS |
| GGAAAGATACAGTTGGACCA+TGG | 0.578747 | 6:-89193891 | MsG0680034513.01.T01:CDS |
| TTTAGGTGGAAAGATACAGT+TGG | 0.580714 | 6:-89193898 | MsG0680034513.01.T01:CDS |
| CAAACATCAATTAGATCACC+CGG | 0.591967 | 6:-89193354 | MsG0680034513.01.T01:CDS |
| GGACCATGGGAAGAGAGACC+TGG | 0.595111 | 6:-89193877 | MsG0680034513.01.T01:CDS |
| GAAAATCATATAGATCTGCC+GGG | 0.607248 | 6:+89193336 | None:intergenic |
| TAGAGAACCCCATCGTGATG+TGG | 0.623492 | 6:+89193670 | None:intergenic |
| GCTGTTTGGAAGGAAGATGC+TGG | 0.626341 | 6:-89192985 | MsG0680034513.01.T01:CDS |
| TAGTGAGTATGCTGTTTGGA+AGG | 0.628304 | 6:-89192995 | MsG0680034513.01.T01:CDS |
| GGTTCTCTAAGAGCTTTCAT+GGG | 0.632668 | 6:-89193656 | MsG0680034513.01.T01:CDS |
| GAGGTTCTTCCACATCACGA+TGG | 0.646847 | 6:-89193679 | MsG0680034513.01.T01:CDS |
| GGTTCTTCCACATCACGATG+GGG | 0.688195 | 6:-89193677 | MsG0680034513.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAGTAACTTTTTAAAT+TGG | + | Chr6:89193755-89193774 | None:intergenic | 10.0% |
| !!! | GATTTTTTTTATAATATAGA+TGG | + | Chr6:89193038-89193057 | None:intergenic | 10.0% |
| !!! | TAATCTATTTTCTATAATAT+AGG | - | Chr6:89194440-89194459 | MsG0680034513.01.T01:intron | 10.0% |
| !!! | TAATCTTAATCTTTAAAATA+TGG | - | Chr6:89192534-89192553 | MsG0680034513.01.T01:CDS | 10.0% |
| !!! | TATTTTAAAGATTAAGATTA+TGG | + | Chr6:89192534-89192553 | None:intergenic | 10.0% |
| !!! | TTTTCATGAAATTTAATTTA+AGG | - | Chr6:89194170-89194189 | MsG0680034513.01.T01:intron | 10.0% |
| !!! | TTTTGACAAAAAAAAAAAAA+CGG | - | Chr6:89192707-89192726 | MsG0680034513.01.T01:intron | 10.0% |
| !!! | TTTTTTTTTGAAAGAATTTA+AGG | - | Chr6:89194201-89194220 | MsG0680034513.01.T01:intron | 10.0% |
| !!! | TTTTTTTTTTTGTCAAAAAA+AGG | + | Chr6:89192705-89192724 | None:intergenic | 10.0% |
| !! | AACAAAAAAATAATTGTGTT+AGG | + | Chr6:89193068-89193087 | None:intergenic | 15.0% |
| !! | AAGAATAAATGATAAACAAT+AGG | + | Chr6:89194366-89194385 | None:intergenic | 15.0% |
| !!! | AAACATGTGAATTTTTTTTA+AGG | + | Chr6:89192873-89192892 | None:intergenic | 15.0% |
| !!! | AATAAAAAGTATTATTGACA+AGG | + | Chr6:89193813-89193832 | None:intergenic | 15.0% |
| !!! | AATTATTTTTTTGTTATAGG+TGG | - | Chr6:89193073-89193092 | MsG0680034513.01.T01:intron | 15.0% |
| !!! | AATTCATGCATTTTTATTAT+AGG | - | Chr6:89192996-89193015 | MsG0680034513.01.T01:intron | 15.0% |
| !!! | CACAATTATTTTTTTGTTAT+AGG | - | Chr6:89193070-89193089 | MsG0680034513.01.T01:intron | 15.0% |
| !!! | GAAGAAAAAATATTTTAGAA+AGG | + | Chr6:89193253-89193272 | None:intergenic | 15.0% |
| !! | ACTTTCGATCATTAATTAAT+AGG | - | Chr6:89193299-89193318 | MsG0680034513.01.T01:CDS | 20.0% |
| !! | CAAAAAACTATATTCTTACT+AGG | - | Chr6:89192643-89192662 | MsG0680034513.01.T01:intron | 20.0% |
| !! | TCATATGTTAAATTATGAGT+CGG | - | Chr6:89192911-89192930 | MsG0680034513.01.T01:intron | 20.0% |
| !! | TGTGATAAATATAACTATCT+AGG | - | Chr6:89193444-89193463 | MsG0680034513.01.T01:intron | 20.0% |
| !! | TTAATGACATATGGAATTAT+TGG | - | Chr6:89193179-89193198 | MsG0680034513.01.T01:CDS | 20.0% |
| !!! | TCTATTTTCTATAATATAGG+TGG | - | Chr6:89194443-89194462 | MsG0680034513.01.T01:intron | 20.0% |
| !!! | TCTGTATTTTTTTATTGACT+AGG | - | Chr6:89193576-89193595 | MsG0680034513.01.T01:intron | 20.0% |
| !!! | TTTGAGATAATTTGAATATC+AGG | + | Chr6:89193642-89193661 | None:intergenic | 20.0% |
| ! | AACTATTTGTTTGAATTGAG+TGG | - | Chr6:89194487-89194506 | MsG0680034513.01.T01:intron | 25.0% |
| ! | AAGGATATATAACATGTAAG+TGG | + | Chr6:89193794-89193813 | None:intergenic | 25.0% |
| ! | AATTCCATATGTCATTAAAG+TGG | + | Chr6:89193177-89193196 | None:intergenic | 25.0% |
| ! | CAAATTATCTCAAATTGTGA+TGG | - | Chr6:89193648-89193667 | MsG0680034513.01.T01:CDS | 25.0% |
| ! | GTTATCGAATTTGGTATAAT+TGG | + | Chr6:89193875-89193894 | None:intergenic | 25.0% |
| ! | TTAATATTGCCTAAGAAACA+AGG | + | Chr6:89192737-89192756 | None:intergenic | 25.0% |
| ! | TTAGATTCATACAGATTCTA+TGG | - | Chr6:89193840-89193859 | MsG0680034513.01.T01:CDS | 25.0% |
| !! | ATGCATTTTTATTATAGGTG+GGG | - | Chr6:89193001-89193020 | MsG0680034513.01.T01:intron | 25.0% |
| !! | CATGCATTTTTATTATAGGT+GGG | - | Chr6:89193000-89193019 | MsG0680034513.01.T01:intron | 25.0% |
| !! | TCATGCATTTTTATTATAGG+TGG | - | Chr6:89192999-89193018 | MsG0680034513.01.T01:intron | 25.0% |
| !! | TTTTAATCAAACCTTTGAAC+CGG | + | Chr6:89193908-89193927 | None:intergenic | 25.0% |
| !!! | TCTTTAAAATATGGTCTCTT+TGG | - | Chr6:89192543-89192562 | MsG0680034513.01.T01:CDS | 25.0% |
| AGTTTAGCATTTGTTTCAGA+TGG | - | Chr6:89194542-89194561 | MsG0680034513.01.T01:CDS | 30.0% | |
| ATCACAATCTTCATTTCCAA+TGG | + | Chr6:89193430-89193449 | None:intergenic | 30.0% | |
| ATCGTTTGTGTTAAAAAGAG+TGG | + | Chr6:89194330-89194349 | None:intergenic | 30.0% | |
| GCAACAAATCTCAAATCAAA+TGG | + | Chr6:89193408-89193427 | None:intergenic | 30.0% | |
| TAAAATATGGTCTCTTTGGT+AGG | - | Chr6:89192547-89192566 | MsG0680034513.01.T01:CDS | 30.0% | |
| TGAAAATCATATAGATCTGC+CGG | + | Chr6:89193696-89193715 | None:intergenic | 30.0% | |
| TTATAGCTTCATAGAACTTC+AGG | + | Chr6:89193608-89193627 | None:intergenic | 30.0% | |
| ! | ATCTGAAACAAATGCTAAAC+TGG | + | Chr6:89194543-89194562 | None:intergenic | 30.0% |
| ! | ATTATCCGAGAAATGCTTTT+AGG | - | Chr6:89193113-89193132 | MsG0680034513.01.T01:intron | 30.0% |
| ! | TCATTTCTCTCTTTTTGCTT+CGG | - | Chr6:89192611-89192630 | MsG0680034513.01.T01:intron | 30.0% |
| !!! | ATGGATTTGGTTATTTTGAG+GGG | - | Chr6:89193209-89193228 | MsG0680034513.01.T01:intron | 30.0% |
| !!! | GATGGATTTGGTTATTTTGA+GGG | - | Chr6:89193208-89193227 | MsG0680034513.01.T01:intron | 30.0% |
| !!! | TGATGGATTTGGTTATTTTG+AGG | - | Chr6:89193207-89193226 | MsG0680034513.01.T01:intron | 30.0% |
| AATCTCAAATCAAATGGCTC+AGG | + | Chr6:89193402-89193421 | None:intergenic | 35.0% | |
| AATTAATAGGAAGCCCTAGA+TGG | - | Chr6:89193312-89193331 | MsG0680034513.01.T01:CDS | 35.0% | |
| AGCAAACTCAATACCATCTA+GGG | + | Chr6:89193328-89193347 | None:intergenic | 35.0% | |
| ATAGGTGGTTGTTATGTAGA+AGG | - | Chr6:89193088-89193107 | MsG0680034513.01.T01:intron | 35.0% | |
| ATGAATGCAGTAGTGAAGAA+AGG | + | Chr6:89194520-89194539 | None:intergenic | 35.0% | |
| CAAACATCAATTAGATCACC+CGG | - | Chr6:89193674-89193693 | MsG0680034513.01.T01:CDS | 35.0% | |
| GAAAATCATATAGATCTGCC+GGG | + | Chr6:89193695-89193714 | None:intergenic | 35.0% | |
| TAGCAAACTCAATACCATCT+AGG | + | Chr6:89193329-89193348 | None:intergenic | 35.0% | |
| TCATTGGGCTTGAAAAGAAT+AGG | - | Chr6:89194107-89194126 | MsG0680034513.01.T01:intron | 35.0% | |
| TGAATGCAGTAGTGAAGAAA+GGG | + | Chr6:89194519-89194538 | None:intergenic | 35.0% | |
| TGGAATTATTGGACTGATGA+TGG | - | Chr6:89193190-89193209 | MsG0680034513.01.T01:intron | 35.0% | |
| TTGTTAGTGAGTATGCTGTT+TGG | - | Chr6:89194029-89194048 | MsG0680034513.01.T01:intron | 35.0% | |
| TTTAGGTGGAAAGATACAGT+TGG | - | Chr6:89193130-89193149 | MsG0680034513.01.T01:intron | 35.0% | |
| ! | TCTTTTTGCTTCGGTTTCTT+AGG | - | Chr6:89192620-89192639 | MsG0680034513.01.T01:intron | 35.0% |
| !! | GATTTGAGATTTGTTGCCAT+TGG | - | Chr6:89193411-89193430 | MsG0680034513.01.T01:CDS | 35.0% |
| !! | TATTCTTTTCAAGCCCAATG+AGG | + | Chr6:89194108-89194127 | None:intergenic | 35.0% |
| !! | TATTGGACTGATGATGGATT+TGG | - | Chr6:89193196-89193215 | MsG0680034513.01.T01:intron | 35.0% |
| !! | TTCCACCTAAAAGCATTTCT+CGG | + | Chr6:89193121-89193140 | None:intergenic | 35.0% |
| CATATGTCATTAAAGTGGCC+AGG | + | Chr6:89193172-89193191 | None:intergenic | 40.0% | |
| CGGGTGATCTAATTGATGTT+TGG | + | Chr6:89193676-89193695 | None:intergenic | 40.0% | |
| CTACAGTGAAATCGTTAGCA+TGG | - | Chr6:89194293-89194312 | MsG0680034513.01.T01:intron | 40.0% | |
| GAAAGATACAGTTGGACCAT+GGG | - | Chr6:89193138-89193157 | MsG0680034513.01.T01:CDS | 40.0% | |
| GGGCTTGAAAAGAATAGGTT+TGG | - | Chr6:89194112-89194131 | MsG0680034513.01.T01:intron | 40.0% | |
| ! | ATCCGAGAAATGCTTTTAGG+TGG | - | Chr6:89193116-89193135 | MsG0680034513.01.T01:intron | 40.0% |
| ! | CTGGCCACTTTAATGACATA+TGG | - | Chr6:89193170-89193189 | MsG0680034513.01.T01:CDS | 40.0% |
| ! | GGTTCTCTAAGAGCTTTCAT+GGG | - | Chr6:89193372-89193391 | MsG0680034513.01.T01:CDS | 40.0% |
| ! | TAGTGAGTATGCTGTTTGGA+AGG | - | Chr6:89194033-89194052 | MsG0680034513.01.T01:intron | 40.0% |
| ! | TCTTGGTGCGTTATCGAATT+TGG | + | Chr6:89193884-89193903 | None:intergenic | 40.0% |
| !! | GATGGTATTGAGTTTGCTAG+AGG | - | Chr6:89193330-89193349 | MsG0680034513.01.T01:CDS | 40.0% |
| AGGTTCTTCCACATCACGAT+GGG | - | Chr6:89193350-89193369 | MsG0680034513.01.T01:CDS | 45.0% | |
| CAAACCTTTGAACCGGATCT+TGG | + | Chr6:89193901-89193920 | None:intergenic | 45.0% | |
| CTGAAGCTGCATTCCTCATT+GGG | - | Chr6:89194092-89194111 | MsG0680034513.01.T01:intron | 45.0% | |
| GGAAAGATACAGTTGGACCA+TGG | - | Chr6:89193137-89193156 | MsG0680034513.01.T01:CDS | 45.0% | |
| TTCGATAACGCACCAAGATC+CGG | - | Chr6:89193886-89193905 | MsG0680034513.01.T01:CDS | 45.0% | |
| ! | GGGTTCTCTAAGAGCTTTCA+TGG | - | Chr6:89193371-89193390 | MsG0680034513.01.T01:CDS | 45.0% |
| !! | AACGGCATGCCTTGTTTCTT+AGG | - | Chr6:89192725-89192744 | MsG0680034513.01.T01:intron | 45.0% |
| !! | AAAAGAAATAAAATAAATAA+TGG | - | Chr6:89192495-89192514 | MsG0680034513.01.T01:CDS | 5.0% |
| !!! | ATTAATTTTTTTTTATAAGT+GGG | - | Chr6:89193523-89193542 | MsG0680034513.01.T01:intron | 5.0% |
| !!! | TATTAATTTTTTTTTATAAG+TGG | - | Chr6:89193522-89193541 | MsG0680034513.01.T01:intron | 5.0% |
| CTTCAGCAACAGCTGCGTAA+AGG | + | Chr6:89194078-89194097 | None:intergenic | 50.0% | |
| GAGGTTCTTCCACATCACGA+TGG | - | Chr6:89193349-89193368 | MsG0680034513.01.T01:CDS | 50.0% | |
| GCTGAAGCTGCATTCCTCAT+TGG | - | Chr6:89194091-89194110 | MsG0680034513.01.T01:intron | 50.0% | |
| GCTGTTTGGAAGGAAGATGC+TGG | - | Chr6:89194043-89194062 | MsG0680034513.01.T01:intron | 50.0% | |
| GGTTCTTCCACATCACGATG+GGG | - | Chr6:89193351-89193370 | MsG0680034513.01.T01:CDS | 50.0% | |
| TAGAGAACCCCATCGTGATG+TGG | + | Chr6:89193361-89193380 | None:intergenic | 50.0% | |
| CGCACCAAGATCCGGTTCAA+AGG | - | Chr6:89193894-89193913 | MsG0680034513.01.T01:CDS | 55.0% | |
| GGACCATGGGAAGAGAGACC+TGG | - | Chr6:89193151-89193170 | MsG0680034513.01.T01:CDS | 60.0% | |
| TGGCCAGGTCTCTCTTCCCA+TGG | + | Chr6:89193157-89193176 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 89192480 | 89194570 | 89192480 | ID=MsG0680034513.01;Name=MsG0680034513.01 |
| Chr6 | mRNA | 89192480 | 89194570 | 89192480 | ID=MsG0680034513.01.T01;Parent=MsG0680034513.01;Name=MsG0680034513.01.T01;_AED=0.49;_eAED=0.74;_QI=0|0|0|1|0.5|0.28|7|0|255 |
| Chr6 | exon | 89194534 | 89194570 | 89194534 | ID=MsG0680034513.01.T01:exon:26792;Parent=MsG0680034513.01.T01 |
| Chr6 | exon | 89193813 | 89193958 | 89193813 | ID=MsG0680034513.01.T01:exon:26791;Parent=MsG0680034513.01.T01 |
| Chr6 | exon | 89193585 | 89193729 | 89193585 | ID=MsG0680034513.01.T01:exon:26790;Parent=MsG0680034513.01.T01 |
| Chr6 | exon | 89193287 | 89193452 | 89193287 | ID=MsG0680034513.01.T01:exon:26789;Parent=MsG0680034513.01.T01 |
| Chr6 | exon | 89193135 | 89193206 | 89193135 | ID=MsG0680034513.01.T01:exon:26788;Parent=MsG0680034513.01.T01 |
| Chr6 | exon | 89192922 | 89193014 | 89192922 | ID=MsG0680034513.01.T01:exon:26787;Parent=MsG0680034513.01.T01 |
| Chr6 | exon | 89192480 | 89192588 | 89192480 | ID=MsG0680034513.01.T01:exon:26786;Parent=MsG0680034513.01.T01 |
| Chr6 | CDS | 89194534 | 89194570 | 89194534 | ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01 |
| Chr6 | CDS | 89193813 | 89193958 | 89193813 | ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01 |
| Chr6 | CDS | 89193585 | 89193729 | 89193585 | ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01 |
| Chr6 | CDS | 89193287 | 89193452 | 89193287 | ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01 |
| Chr6 | CDS | 89193135 | 89193206 | 89193135 | ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01 |
| Chr6 | CDS | 89192922 | 89193014 | 89192922 | ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01 |
| Chr6 | CDS | 89192480 | 89192588 | 89192480 | ID=MsG0680034513.01.T01:cds;Parent=MsG0680034513.01.T01 |
| Gene Sequence |
| Protein sequence |
