AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046620.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046620.01.T01 MTR_6g013210 72.368 76 10 1 70 145 1 65 1.30e-30 105
MsG0880046620.01.T01 MTR_4g081180 72.368 76 10 1 70 145 150 214 1.30e-29 107
MsG0880046620.01.T01 MTR_6g013410 60.526 76 18 1 70 145 38 101 9.89e-23 87.0
MsG0880046620.01.T01 MTR_8g089765 61.972 71 16 1 70 140 1 60 9.39e-22 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046620.01.T01 AT5G03850 71.053 76 10 1 70 145 1 64 5.73e-30 104
MsG0880046620.01.T01 AT3G10090 71.053 76 10 1 70 145 1 64 5.73e-30 104
MsG0880046620.01.T01 AT5G64140 71.053 76 10 1 70 145 1 64 1.56e-29 103

Find 43 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAAGCTGGCTATATTTAC+AGG 0.291502 8:-75717542 None:intergenic
GCCCAAGAAGAAGGCTTTAC+AGG 0.319163 8:+75716640 MsG0880046620.01.T01:CDS
TAAAGACGTGGCTACTGATA+TGG 0.336744 8:+75716673 MsG0880046620.01.T01:CDS
CACCTGTAAAGCCTTCTTCT+TGG 0.343749 8:-75716642 None:intergenic
AGGGTGTCTCCTTCTCTAAC+TGG 0.350754 8:-75719901 None:intergenic
GAGGACAGGTGACTCAAGTT+AGG 0.354183 8:+75719794 MsG0880046620.01.T01:CDS
CTTCTCTCTCAGACTTAAGC+AGG 0.366839 8:-75719927 None:intergenic
ACCTGTAAAGCCTTCTTCTT+GGG 0.378324 8:-75716641 None:intergenic
CCTGTAAATATAGCCAGCTT+TGG 0.411679 8:+75717542 MsG0880046620.01.T01:CDS
ACAAGCCTCAGCTTGCAATA+TGG 0.420185 8:-75716617 None:intergenic
GTCAAGGTCATGGGTTGTAC+TGG 0.437317 8:+75719766 MsG0880046620.01.T01:CDS
CTGGTCCCTTCAAGTTCCTC+AGG 0.460741 8:-75719882 None:intergenic
TGCTATTGTTGTCAAGGTCA+TGG 0.462094 8:+75719756 MsG0880046620.01.T01:CDS
CTGTAAATATAGCCAGCTTT+GGG 0.465781 8:+75717543 MsG0880046620.01.T01:CDS
GGTCTTGTGCAGGATTAGTC+TGG 0.489428 8:+75719978 MsG0880046620.01.T01:CDS
GCTATTGTTGTCAAGGTCAT+GGG 0.493299 8:+75719757 MsG0880046620.01.T01:CDS
GTGCAGGATTAGTCTGGTGT+AGG 0.496483 8:+75719984 MsG0880046620.01.T01:CDS
CCACTTATTTCATCAGCACA+TGG 0.507439 8:-75716698 None:intergenic
GAGGCTTGTGCCCAAGAAGA+AGG 0.509438 8:+75716631 MsG0880046620.01.T01:CDS
TTAAGGCTTAGATATGCAAA+TGG 0.510492 8:+75717517 MsG0880046620.01.T01:intron
TCACATCCTGAGGAACTTGA+AGG 0.510968 8:+75719876 MsG0880046620.01.T01:CDS
GAAACTCAATGGTCTTGTGC+AGG 0.530533 8:+75719968 MsG0880046620.01.T01:CDS
CAATATGGGTGGAGGAAGAT+CGG 0.530798 8:+75716446 None:intergenic
TTGTACTGGTTCTAGAGGAC+AGG 0.533475 8:+75719780 MsG0880046620.01.T01:CDS
AGTCTGAGAGAGAAGAAAGA+AGG 0.538315 8:+75719935 MsG0880046620.01.T01:CDS
AGGACAGGTGACTCAAGTTA+GGG 0.544104 8:+75719795 MsG0880046620.01.T01:CDS
CAAGCATGCTATTGTTGTCA+AGG 0.547128 8:+75719750 MsG0880046620.01.T01:CDS
TCTCAGACTTAAGCAGGGTG+AGG 0.548798 8:-75719921 None:intergenic
CACTTATTTCATCAGCACAT+GGG 0.576309 8:-75716697 None:intergenic
TGGTTAACAATACCCAAAGC+TGG 0.578242 8:-75717555 None:intergenic
CCATGAAGCAATATGGGTGG+AGG 0.579809 8:+75716438 None:intergenic
TTCTCTCTCAGACTTAAGCA+GGG 0.585666 8:-75719926 None:intergenic
CAAAGCTGGCTATATTTACA+GGG 0.594139 8:-75717541 None:intergenic
GCTGCGCTATAGAAACTCAA+TGG 0.600028 8:+75719957 MsG0880046620.01.T01:CDS
ATGGGTTGTACTGGTTCTAG+AGG 0.605991 8:+75719775 MsG0880046620.01.T01:CDS
TTGAAGGGACCAGTTAGAGA+AGG 0.608310 8:+75719892 MsG0880046620.01.T01:CDS
CTCAGACTTAAGCAGGGTGA+GGG 0.611696 8:-75719920 None:intergenic
TGCATCCATATTGCAAGCTG+AGG 0.613147 8:+75716612 MsG0880046620.01.T01:CDS
CACATCCTGAGGAACTTGAA+GGG 0.616626 8:+75719877 MsG0880046620.01.T01:CDS
AAACTAATCGTCACATCCTG+AGG 0.621522 8:+75719866 MsG0880046620.01.T01:CDS
CCACAGGAAATAGTTATCGA+TGG 0.631128 8:+75716581 MsG0880046620.01.T01:intron
AACCCATGAAGCAATATGGG+TGG 0.634395 8:+75716435 None:intergenic
GGTGAATATTGATAAAGACG+TGG 0.753863 8:+75716661 MsG0880046620.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAATTAATATTTTATA+GGG + Chr8:75717322-75717341 MsG0880046620.01.T01:intron 0.0%
!!! TATATTAATTAATATTTTAT+AGG + Chr8:75717321-75717340 MsG0880046620.01.T01:intron 0.0%
!! TAATTAAAATTCGATTTATT+TGG - Chr8:75717852-75717833 None:intergenic 10.0%
!!! AAATTGAAGAATTTTTTTAA+AGG - Chr8:75717396-75717415 None:intergenic 10.0%
!!! AATAAATCGAATTTTAATTA+AGG + Chr8:75718089-75718108 MsG0880046620.01.T01:intron 10.0%
!!! AATAAATCGAATTTTAATTA+AGG - Chr8:75718108-75718089 None:intergenic 10.0%
!!! AATTAAAATTCGATTTATTT+TGG + Chr8:75717834-75717853 MsG0880046620.01.T01:intron 10.0%
!!! AATTGAAGAATTTTTTTAAA+GGG - Chr8:75717395-75717414 None:intergenic 10.0%
!!! AATTTGCAAATATTTAAAAT+TGG - Chr8:75718308-75718327 None:intergenic 10.0%
!!! ATAAATCGAATTTTAATTAA+GGG + Chr8:75718090-75718109 MsG0880046620.01.T01:intron 10.0%
!!! ATAAATCGAATTTTAATTAA+GGG - Chr8:75718109-75718090 None:intergenic 10.0%
!!! ATGTAAACTTTATATTTTTA+AGG + Chr8:75717472-75717491 MsG0880046620.01.T01:intron 10.0%
!!! ATTAGTTTTTTTTTTTTGAA+AGG - Chr8:75719854-75719873 None:intergenic 10.0%
!! AAACCTAAAATTAATGAATT+TGG - Chr8:75718335-75718354 None:intergenic 15.0%
!! AACCTAAAATTAATGAATTT+GGG - Chr8:75718334-75718353 None:intergenic 15.0%
!! AGTAAAGATATATTTACATA+AGG + Chr8:75717129-75717148 MsG0880046620.01.T01:intron 15.0%
!! ATAATATGAAGATGAAAAAA+GGG - Chr8:75717943-75717962 None:intergenic 15.0%
!! TTCAAGTATATAGAAAAATT+GGG - Chr8:75716958-75716977 None:intergenic 15.0%
!! TTCTTTATTACTATATAAAC+AGG + Chr8:75718776-75718795 MsG0880046620.01.T01:intron 15.0%
!!! AAAAACTCCTTATAAAATTT+TGG + Chr8:75717757-75717776 MsG0880046620.01.T01:intron 15.0%
!!! AAAAATTTAATCTTCACTTT+TGG + Chr8:75717428-75717447 MsG0880046620.01.T01:intron 15.0%
!!! AAAATTTTCTGTCTTTTAAA+AGG + Chr8:75718164-75718183 MsG0880046620.01.T01:intron 15.0%
!!! AAATTTTCTGTCTTTTAAAA+GGG + Chr8:75718165-75718184 MsG0880046620.01.T01:intron 15.0%
!!! AATTTAGCCAAAATTTTATA+AGG - Chr8:75717767-75717786 None:intergenic 15.0%
!!! AGTTTTAATTCAAAAATGTT+AGG - Chr8:75718024-75718043 None:intergenic 15.0%
!!! AGTTTTAATTTAAAAACGTT+AGG + Chr8:75717899-75717918 MsG0880046620.01.T01:intron 15.0%
!!! ATTTTCTTATGGAATTTTTT+GGG - Chr8:75717993-75718012 None:intergenic 15.0%
!!! CATTTTTGAATTAAAACTAA+CGG + Chr8:75718026-75718045 MsG0880046620.01.T01:intron 15.0%
!!! GTAACTTTTTTTTTTTTTTG+AGG + Chr8:75717255-75717274 MsG0880046620.01.T01:intron 15.0%
!!! TGAAGATTAAATTTTTTTGA+AGG - Chr8:75717424-75717443 None:intergenic 15.0%
!!! TTTAAAAGACAGAAAATTTT+AGG - Chr8:75718164-75718183 None:intergenic 15.0%
!! AAAGATATATTTACATAAGG+CGG + Chr8:75717132-75717151 MsG0880046620.01.T01:intron 20.0%
!! AATACAAAATGAGTTACATA+TGG - Chr8:75719521-75719540 None:intergenic 20.0%
!! ACATTTACAATGTCAATAAT+GGG - Chr8:75719699-75719718 None:intergenic 20.0%
!! ACCTAAAATTAATGAATTTG+GGG - Chr8:75718333-75718352 None:intergenic 20.0%
!! GATAATATGAAGATGAAAAA+AGG - Chr8:75717944-75717963 None:intergenic 20.0%
!! GATACTAACTAAATAGTTAA+GGG + Chr8:75718121-75718140 MsG0880046620.01.T01:intron 20.0%
!! GATGTAGATAACTATTAATT+TGG + Chr8:75719204-75719223 MsG0880046620.01.T01:intron 20.0%
!! GTTCAAGTATATAGAAAAAT+TGG - Chr8:75716959-75716978 None:intergenic 20.0%
!! TTTATTTCACTATATAGACT+AGG + Chr8:75719062-75719081 MsG0880046620.01.T01:intron 20.0%
!!! ACATAACAAATCTAAAATCA+TGG - Chr8:75719643-75719662 None:intergenic 20.0%
!!! CATTTTCTTATGGAATTTTT+TGG - Chr8:75717994-75718013 None:intergenic 20.0%
!!! CGTTTTTAAATTAAAACTAG+CGG - Chr8:75717897-75717916 None:intergenic 20.0%
!!! TATGTTACTTCTTTTGTATT+TGG + Chr8:75719174-75719193 MsG0880046620.01.T01:intron 20.0%
!!! TCATTTTGTATTAGTCTAAA+TGG + Chr8:75719529-75719548 MsG0880046620.01.T01:intron 20.0%
!!! TTTACACTTTCTTTTTGTTA+GGG + Chr8:75719666-75719685 MsG0880046620.01.T01:intron 20.0%
!!! TTTTAAAGTTTAAATCCACT+TGG - Chr8:75718269-75718288 None:intergenic 20.0%
!!! TTTTACACTTTCTTTTTGTT+AGG + Chr8:75719665-75719684 MsG0880046620.01.T01:intron 20.0%
! AAAACATACTACTACTATGA+AGG - Chr8:75717022-75717041 None:intergenic 25.0%
! AAAATGAGTTACATATGGTT+GGG - Chr8:75719516-75719535 None:intergenic 25.0%
! AAAATTATGCGATCAATTTC+AGG - Chr8:75719270-75719289 None:intergenic 25.0%
! AAGATATATTTACATAAGGC+GGG + Chr8:75717133-75717152 MsG0880046620.01.T01:intron 25.0%
! ATTGTAAATGTGCTTGTATT+TGG + Chr8:75719708-75719727 MsG0880046620.01.T01:intron 25.0%
! CACATTTACAATGTCAATAA+TGG - Chr8:75719700-75719719 None:intergenic 25.0%
! CATTTACAATGTCAATAATG+GGG - Chr8:75719698-75719717 None:intergenic 25.0%
! CGATACTAACTAAATAGTTA+AGG + Chr8:75718120-75718139 MsG0880046620.01.T01:intron 25.0%
! GATACTACCTAAATAGTTAA+GGG - Chr8:75717801-75717820 None:intergenic 25.0%
! TAAAGAAGTCTTTATACACT+CGG - Chr8:75716856-75716875 None:intergenic 25.0%
! TACAAAAGAAGTAACATATG+AGG - Chr8:75719172-75719191 None:intergenic 25.0%
! TTAAATTAAAACTAGCGGAA+AGG - Chr8:75717892-75717911 None:intergenic 25.0%
! TTGAATTAAAACTAACGGAA+AGG + Chr8:75718031-75718050 MsG0880046620.01.T01:intron 25.0%
! TTGTAAATGTGCTTGTATTT+GGG + Chr8:75719709-75719728 MsG0880046620.01.T01:intron 25.0%
! TTTGAAGAATTAGAGAATGA+AGG + Chr8:75718599-75718618 MsG0880046620.01.T01:intron 25.0%
! TTTGAATTATAATTGCCCTA+AGG + Chr8:75719404-75719423 MsG0880046620.01.T01:intron 25.0%
!! ACCCCAAATTCATTAATTTT+AGG + Chr8:75718329-75718348 MsG0880046620.01.T01:intron 25.0%
!! AGGTTTTCTTCATTTTCTTA+TGG - Chr8:75718004-75718023 None:intergenic 25.0%
!! AGTTTATGGATTAAACAAGT+AGG + Chr8:75718994-75719013 MsG0880046620.01.T01:intron 25.0%
!! CTGAAATTTGAGAATTTTCA+GGG + Chr8:75719617-75719636 MsG0880046620.01.T01:intron 25.0%
!! TTTTAGGCTTAATTGCATTT+TGG - Chr8:75718148-75718167 None:intergenic 25.0%
!!! TTTTGGCTAAATTGCATTTT+TGG + Chr8:75717774-75717793 MsG0880046620.01.T01:intron 25.0%
AAAAGAAGTAACATATGAGG+TGG - Chr8:75719169-75719188 None:intergenic 30.0%
AAAATACGAGCAGAATAGTA+AGG - Chr8:75718693-75718712 None:intergenic 30.0%
AAAATGATTGTCGTGCAAAT+CGG - Chr8:75716989-75717008 None:intergenic 30.0%
AAAGAAGTCTTTATACACTC+GGG - Chr8:75716855-75716874 None:intergenic 30.0%
AAATAAGTGGGAACAAGAAT+GGG + Chr8:75716711-75716730 MsG0880046620.01.T01:intron 30.0%
AATGAACTCATTTAGTCCTT+AGG - Chr8:75719423-75719442 None:intergenic 30.0%
AGATATATTTACATAAGGCG+GGG + Chr8:75717134-75717153 MsG0880046620.01.T01:intron 30.0%
ATGAACTCATTTAGTCCTTA+GGG - Chr8:75719422-75719441 None:intergenic 30.0%
CAAAATGAGTTACATATGGT+TGG - Chr8:75719517-75719536 None:intergenic 30.0%
CATTAACTTTGTTGAGTTTC+AGG - Chr8:75716501-75716520 None:intergenic 30.0%
CGATACTACCTAAATAGTTA+AGG - Chr8:75717802-75717821 None:intergenic 30.0%
CTATTTAGTTAGTATCGCTT+TGG - Chr8:75718117-75718136 None:intergenic 30.0%
GTGTAACATAGAGAAGTTAA+GGG + Chr8:75718062-75718081 MsG0880046620.01.T01:intron 30.0%
TAGTATATATATCATGCAGC+AGG - Chr8:75719592-75719611 None:intergenic 30.0%
TGTGTAACATAGAGAAGTTA+AGG + Chr8:75718061-75718080 MsG0880046620.01.T01:intron 30.0%
TTAAGGCTTAGATATGCAAA+TGG + Chr8:75717517-75717536 MsG0880046620.01.T01:intron 30.0%
TTTAATCCATAAACTCAACG+AGG - Chr8:75718989-75719008 None:intergenic 30.0%
! CTATTTAGGTAGTATCGTTT+TGG + Chr8:75717805-75717824 MsG0880046620.01.T01:intron 30.0%
! GAAATTTGCTTTGAATGTGT+TGG + Chr8:75719302-75719321 MsG0880046620.01.T01:intron 30.0%
! GCTGAAATTTGAGAATTTTC+AGG + Chr8:75719616-75719635 MsG0880046620.01.T01:intron 30.0%
! TTTTGGTCCCTTAACTATTT+AGG + Chr8:75717791-75717810 MsG0880046620.01.T01:intron 30.0%
!! AATTTCAGGTTCTTCTATTG+GGG - Chr8:75719256-75719275 None:intergenic 30.0%
!! CAATTTCAGGTTCTTCTATT+GGG - Chr8:75719257-75719276 None:intergenic 30.0%
!! TCAATTTCAGGTTCTTCTAT+TGG - Chr8:75719258-75719277 None:intergenic 30.0%
!!! TAAATGCTGCTGTTTTGAAA+TGG + Chr8:75718719-75718738 MsG0880046620.01.T01:intron 30.0%
AACAAGTAGGACTATACCAT+AGG + Chr8:75719007-75719026 MsG0880046620.01.T01:intron 35.0%
AATTATATGACACGATGGGT+GGG - Chr8:75718377-75718396 None:intergenic 35.0%
ACAGCAGTTTACTGTGTTAA+TGG + Chr8:75716801-75716820 MsG0880046620.01.T01:intron 35.0%
ACTCTTATTGCTCTTCAACT+AGG - Chr8:75716741-75716760 None:intergenic 35.0%
ACTGATCTTAATTTCAGGCA+TGG - Chr8:75718535-75718554 None:intergenic 35.0%
AGAAGAGGTAATAGAAACGT+TGG + Chr8:75718635-75718654 MsG0880046620.01.T01:intron 35.0%
AGTTTAAATCCACTTGGATC+TGG - Chr8:75718263-75718282 None:intergenic 35.0%
ATAACTATTTCCTGTGGGTT+TGG - Chr8:75716578-75716597 None:intergenic 35.0%
ATATCAATTTCCAAACCCAC+AGG + Chr8:75716565-75716584 MsG0880046620.01.T01:intron 35.0%
ATGAAAGTCGTTATGAAGAG+CGG - Chr8:75717178-75717197 None:intergenic 35.0%
ATGAAATGCTATGATGCCTA+TGG - Chr8:75719026-75719045 None:intergenic 35.0%
CAAAGCTGGCTATATTTACA+GGG - Chr8:75717544-75717563 None:intergenic 35.0%
CAAATCACAGTGCAATAAGA+GGG - Chr8:75719388-75719407 None:intergenic 35.0%
CACTTATTTCATCAGCACAT+GGG - Chr8:75716700-75716719 None:intergenic 35.0%
CATCGATAACTATTTCCTGT+GGG - Chr8:75716583-75716602 None:intergenic 35.0%
CATTGGGAAGAAAGAACAAA+TGG - Chr8:75717049-75717068 None:intergenic 35.0%
CCTCATTTACAACTGTCATT+GGG + Chr8:75719469-75719488 MsG0880046620.01.T01:intron 35.0%
CTGTAAATATAGCCAGCTTT+GGG + Chr8:75717543-75717562 MsG0880046620.01.T01:CDS 35.0%
GAAATAAGTGGGAACAAGAA+TGG + Chr8:75716710-75716729 MsG0880046620.01.T01:intron 35.0%
GGCTTACTGATCTTAATTTC+AGG - Chr8:75718540-75718559 None:intergenic 35.0%
GGTGAATATTGATAAAGACG+TGG + Chr8:75716661-75716680 MsG0880046620.01.T01:CDS 35.0%
TATATATATCATGCAGCAGG+TGG - Chr8:75719589-75719608 None:intergenic 35.0%
TCAAATCACAGTGCAATAAG+AGG - Chr8:75719389-75719408 None:intergenic 35.0%
TGCCAATTATATGACACGAT+GGG - Chr8:75718381-75718400 None:intergenic 35.0%
TGGTATGTAGGAATTATCAC+CGG - Chr8:75718427-75718446 None:intergenic 35.0%
TTCAAATCCTTCCTCAGAAT+GGG - Chr8:75718585-75718604 None:intergenic 35.0%
TTGCAACAGAGAGAAGTTAA+GGG - Chr8:75717861-75717880 None:intergenic 35.0%
TTGCCAATTATATGACACGA+TGG - Chr8:75718382-75718401 None:intergenic 35.0%
TTGGGATGCAAACTATAATC+TGG - Chr8:75716940-75716959 None:intergenic 35.0%
TTTGCAACAGAGAGAAGTTA+AGG - Chr8:75717862-75717881 None:intergenic 35.0%
! CATGTGCTGATGAAATAAGT+GGG + Chr8:75716699-75716718 MsG0880046620.01.T01:intron 35.0%
! TGCACGACAATCATTTTACA+CGG + Chr8:75716992-75717011 MsG0880046620.01.T01:intron 35.0%
! TGCTTTGAATGTGTTGGAAT+TGG + Chr8:75719308-75719327 MsG0880046620.01.T01:intron 35.0%
!! ATTTCAGGTTCTTCTATTGG+GGG - Chr8:75719255-75719274 None:intergenic 35.0%
!! TTGGGATTCTTGTTGTTGAA+GGG - Chr8:75717975-75717994 None:intergenic 35.0%
!! TTTGGGATTCTTGTTGTTGA+AGG - Chr8:75717976-75717995 None:intergenic 35.0%
AAACTAATCGTCACATCCTG+AGG + Chr8:75719866-75719885 MsG0880046620.01.T01:CDS 40.0%
ACCTGTAAAGCCTTCTTCTT+GGG - Chr8:75716644-75716663 None:intergenic 40.0%
AGAAATTGGCACAACGTAAG+AGG - Chr8:75717208-75717227 None:intergenic 40.0%
AGTCTGAGAGAGAAGAAAGA+AGG + Chr8:75719935-75719954 MsG0880046620.01.T01:CDS 40.0%
ATACCTCACATCCACTTGAA+TGG + Chr8:75718961-75718980 MsG0880046620.01.T01:intron 40.0%
ATGGATCCTCGTTGAGTTTA+TGG + Chr8:75718980-75718999 MsG0880046620.01.T01:intron 40.0%
CAAGCATGCTATTGTTGTCA+AGG + Chr8:75719750-75719769 MsG0880046620.01.T01:CDS 40.0%
CAATTATATGACACGATGGG+TGG - Chr8:75718378-75718397 None:intergenic 40.0%
CACCCATCGTGTCATATAAT+TGG + Chr8:75718376-75718395 MsG0880046620.01.T01:intron 40.0%
CAGTGCAATAAGAGGGTTAA+TGG - Chr8:75719381-75719400 None:intergenic 40.0%
CATTTACAACTGTCATTGGG+TGG + Chr8:75719472-75719491 MsG0880046620.01.T01:intron 40.0%
CCAAAGCTGGCTATATTTAC+AGG - Chr8:75717545-75717564 None:intergenic 40.0%
CCACAGGAAATAGTTATCGA+TGG + Chr8:75716581-75716600 MsG0880046620.01.T01:intron 40.0%
CCACTTATTTCATCAGCACA+TGG - Chr8:75716701-75716720 None:intergenic 40.0%
CCATCGATAACTATTTCCTG+TGG - Chr8:75716584-75716603 None:intergenic 40.0%
CCCAATGACAGTTGTAAATG+AGG - Chr8:75719472-75719491 None:intergenic 40.0%
CCTGTAAATATAGCCAGCTT+TGG + Chr8:75717542-75717561 MsG0880046620.01.T01:CDS 40.0%
CGTTATGAAGAGCGGAAAAA+CGG - Chr8:75717170-75717189 None:intergenic 40.0%
CTTCAAATCCTTCCTCAGAA+TGG - Chr8:75718586-75718605 None:intergenic 40.0%
CTTTGATACCCATCTCACTA+TGG + Chr8:75718193-75718212 MsG0880046620.01.T01:intron 40.0%
GCCTCATTTACAACTGTCAT+TGG + Chr8:75719468-75719487 MsG0880046620.01.T01:intron 40.0%
GCTATTGTTGTCAAGGTCAT+GGG + Chr8:75719757-75719776 MsG0880046620.01.T01:CDS 40.0%
GTTATGAAGAGCGGAAAAAC+GGG - Chr8:75717169-75717188 None:intergenic 40.0%
TAAAGACGTGGCTACTGATA+TGG + Chr8:75716673-75716692 MsG0880046620.01.T01:CDS 40.0%
TAAATCCACTTGGATCTGGA+TGG - Chr8:75718259-75718278 None:intergenic 40.0%
TATATAGCAGCAGTTAGTCG+AGG + Chr8:75716768-75716787 MsG0880046620.01.T01:intron 40.0%
TGCTATTGTTGTCAAGGTCA+TGG + Chr8:75719756-75719775 MsG0880046620.01.T01:CDS 40.0%
TGGTTAACAATACCCAAAGC+TGG - Chr8:75717558-75717577 None:intergenic 40.0%
TTCTCTCTCAGACTTAAGCA+GGG - Chr8:75719929-75719948 None:intergenic 40.0%
! CCATGTGCTGATGAAATAAG+TGG + Chr8:75716698-75716717 MsG0880046620.01.T01:intron 40.0%
! GCACGACAATCATTTTACAC+GGG + Chr8:75716993-75717012 MsG0880046620.01.T01:intron 40.0%
! GTATGTTACTTGTACAGCAG+TGG - Chr8:75718945-75718964 None:intergenic 40.0%
!! ATGTCAAAGGGTTTTTGAGG+TGG - Chr8:75718453-75718472 None:intergenic 40.0%
!! TCTTGTTGTTGAAGGGTTGA+TGG - Chr8:75717968-75717987 None:intergenic 40.0%
AAGAGGTGAAGGGGAGAAAT+CGG - Chr8:75718499-75718518 None:intergenic 45.0%
AAGTGGGAACAAGAATGGGA+TGG + Chr8:75716715-75716734 MsG0880046620.01.T01:intron 45.0%
AATTGGCAATCAACCACCAC+CGG + Chr8:75718393-75718412 MsG0880046620.01.T01:intron 45.0%
ACAAGCCTCAGCTTGCAATA+TGG - Chr8:75716620-75716639 None:intergenic 45.0%
AGCACATTGAAGAGGTGAAG+GGG - Chr8:75718508-75718527 None:intergenic 45.0%
AGGACAGGTGACTCAAGTTA+GGG + Chr8:75719795-75719814 MsG0880046620.01.T01:CDS 45.0%
AGTACTGCTTTGTGTTGCGT+TGG + Chr8:75719094-75719113 MsG0880046620.01.T01:intron 45.0%
ATGGAAGCAGCACATTGAAG+AGG - Chr8:75718516-75718535 None:intergenic 45.0%
CACATCCTGAGGAACTTGAA+GGG + Chr8:75719877-75719896 MsG0880046620.01.T01:CDS 45.0%
CACCTGTAAAGCCTTCTTCT+TGG - Chr8:75716645-75716664 None:intergenic 45.0%
CAGCACATTGAAGAGGTGAA+GGG - Chr8:75718509-75718528 None:intergenic 45.0%
CAGCAGCAAAATGTGACTGA+TGG - Chr8:75718838-75718857 None:intergenic 45.0%
CTTCTCTCTCAGACTTAAGC+AGG - Chr8:75719930-75719949 None:intergenic 45.0%
GATACCCATCTCACTATGGT+GGG + Chr8:75718197-75718216 MsG0880046620.01.T01:intron 45.0%
GATCCATTCAAGTGGATGTG+AGG - Chr8:75718967-75718986 None:intergenic 45.0%
GCTGCGCTATAGAAACTCAA+TGG + Chr8:75719957-75719976 MsG0880046620.01.T01:CDS 45.0%
GGTAATAGAAACGTTGGTGC+TGG + Chr8:75718641-75718660 MsG0880046620.01.T01:intron 45.0%
GTAACATATGAGGTGGACAG+TGG - Chr8:75719162-75719181 None:intergenic 45.0%
GTATTGTTAACCAGTACGCC+CGG + Chr8:75717565-75717584 MsG0880046620.01.T01:intron 45.0%
GTGCTTGTATTTGGGCAGAA+TGG + Chr8:75719717-75719736 MsG0880046620.01.T01:intron 45.0%
TAGAGAATGAAGGCTCTCTG+AGG + Chr8:75718609-75718628 MsG0880046620.01.T01:intron 45.0%
TAGATCCTTAACTAGTGCCC+CGG - Chr8:75717587-75717606 None:intergenic 45.0%
TATTGTTAACCAGTACGCCC+GGG + Chr8:75717566-75717585 MsG0880046620.01.T01:intron 45.0%
TCAACGAGGATCCATTCAAG+TGG - Chr8:75718975-75718994 None:intergenic 45.0%
TCACATCCTGAGGAACTTGA+AGG + Chr8:75719876-75719895 MsG0880046620.01.T01:CDS 45.0%
TCTAACCATCCAGATCCAAG+TGG + Chr8:75718251-75718270 MsG0880046620.01.T01:intron 45.0%
TGATACCCATCTCACTATGG+TGG + Chr8:75718196-75718215 MsG0880046620.01.T01:intron 45.0%
TGCATCCATATTGCAAGCTG+AGG + Chr8:75716612-75716631 MsG0880046620.01.T01:CDS 45.0%
TGCTTTGTGTTGCGTTGGAT+GGG + Chr8:75719099-75719118 MsG0880046620.01.T01:intron 45.0%
TGTCGTGCAAATCGGCAATA+TGG - Chr8:75716981-75717000 None:intergenic 45.0%
TTGAAGGGACCAGTTAGAGA+AGG + Chr8:75719892-75719911 MsG0880046620.01.T01:CDS 45.0%
! CTGGAGGTGTGTTCATAACA+TGG + Chr8:75718660-75718679 MsG0880046620.01.T01:intron 45.0%
! GGGATGTCAAAGGGTTTTTG+AGG - Chr8:75718456-75718475 None:intergenic 45.0%
!! AATAGAAACGTTGGTGCTGG+AGG + Chr8:75718644-75718663 MsG0880046620.01.T01:intron 45.0%
!! ATGGGTTGTACTGGTTCTAG+AGG + Chr8:75719775-75719794 MsG0880046620.01.T01:CDS 45.0%
!! GAAACTCAATGGTCTTGTGC+AGG + Chr8:75719968-75719987 MsG0880046620.01.T01:CDS 45.0%
!! TTGAGGTGGTACTGGTATGT+AGG - Chr8:75718439-75718458 None:intergenic 45.0%
!! TTGTACTGGTTCTAGAGGAC+AGG + Chr8:75719780-75719799 MsG0880046620.01.T01:CDS 45.0%
!!! AAGGGTTTTTGAGGTGGTAC+TGG - Chr8:75718447-75718466 None:intergenic 45.0%
!!! ATGTAAAATTTATATTTTTA+AGG + Chr8:75717500-75717519 MsG0880046620.01.T01:intron 5.0%
!!! GTTTTTTTTTAAAAAAAAAA+AGG - Chr8:75717743-75717762 None:intergenic 5.0%
!!! TAATATTTTAAATAAGAAAT+TGG - Chr8:75717222-75717241 None:intergenic 5.0%
ACATGTCTGTCCGATGGGTA+AGG - Chr8:75718225-75718244 None:intergenic 50.0%
AGAAATCGGGAAGTGGTGGT+GGG - Chr8:75718485-75718504 None:intergenic 50.0%
AGAGGTGAAGGGGAGAAATC+GGG - Chr8:75718498-75718517 None:intergenic 50.0%
AGATCAGTAAGCCCGATCCT+AGG + Chr8:75718547-75718566 MsG0880046620.01.T01:intron 50.0%
AGATCCTTAACTAGTGCCCC+GGG - Chr8:75717586-75717605 None:intergenic 50.0%
AGGAACCCACCATAGTGAGA+TGG - Chr8:75718205-75718224 None:intergenic 50.0%
ATATGAGGTGGACAGTGGTG+TGG - Chr8:75719157-75719176 None:intergenic 50.0%
ATTGTTAACCAGTACGCCCG+GGG + Chr8:75717567-75717586 MsG0880046620.01.T01:intron 50.0%
CGGCTCTGCTTGTATTCGTA+AGG + Chr8:75716466-75716485 MsG0880046620.01.T01:intron 50.0%
CTACTCCAGCTGAGTGCATT+GGG - Chr8:75717065-75717084 None:intergenic 50.0%
CTCAGACTTAAGCAGGGTGA+GGG - Chr8:75719923-75719942 None:intergenic 50.0%
CTGCTTTGTGTTGCGTTGGA+TGG + Chr8:75719098-75719117 MsG0880046620.01.T01:intron 50.0%
GAAATGTTAACCAGTGCGCG+AGG - Chr8:75717721-75717740 None:intergenic 50.0%
GAGGACAGGTGACTCAAGTT+AGG + Chr8:75719794-75719813 MsG0880046620.01.T01:CDS 50.0%
GCAGCACATTGAAGAGGTGA+AGG - Chr8:75718510-75718529 None:intergenic 50.0%
GCCCAAGAAGAAGGCTTTAC+AGG + Chr8:75716640-75716659 MsG0880046620.01.T01:CDS 50.0%
GGAACCCACCATAGTGAGAT+GGG - Chr8:75718204-75718223 None:intergenic 50.0%
GTGTGACATGTCTGTCCGAT+GGG - Chr8:75718230-75718249 None:intergenic 50.0%
GTTACTTGTACAGCAGTGGC+AGG - Chr8:75718941-75718960 None:intergenic 50.0%
TCTCAGACTTAAGCAGGGTG+AGG - Chr8:75719924-75719943 None:intergenic 50.0%
TGTGTGACATGTCTGTCCGA+TGG - Chr8:75718231-75718250 None:intergenic 50.0%
TTAACCAATACCTCGCGCAC+TGG + Chr8:75717708-75717727 MsG0880046620.01.T01:intron 50.0%
TTAACCAGTGCGCGAGGTAT+TGG - Chr8:75717715-75717734 None:intergenic 50.0%
TTCTTCCCAATGCACTCAGC+TGG + Chr8:75717057-75717076 MsG0880046620.01.T01:intron 50.0%
! AGGGTGTCTCCTTCTCTAAC+TGG - Chr8:75719904-75719923 None:intergenic 50.0%
! CTCAGAATGGGCTTGAGCTT+GGG - Chr8:75718573-75718592 None:intergenic 50.0%
! GGCTCTCTGAGGAAAAGAAG+AGG + Chr8:75718620-75718639 MsG0880046620.01.T01:intron 50.0%
! GTCAAGGTCATGGGTTGTAC+TGG + Chr8:75719766-75719785 MsG0880046620.01.T01:CDS 50.0%
! TTTTGCTGCTGCCTCCTCAT+CGG + Chr8:75718847-75718866 MsG0880046620.01.T01:intron 50.0%
!! ATGGTGGGTTCCTTACCCAT+CGG + Chr8:75718212-75718231 MsG0880046620.01.T01:intron 50.0%
!! GGTCTTGTGCAGGATTAGTC+TGG + Chr8:75719978-75719997 MsG0880046620.01.T01:CDS 50.0%
ATAAGCAGACATGGCCGAGG+AGG - Chr8:75718909-75718928 None:intergenic 55.0%
ATTATCACCGGCGTCAGTGC+CGG - Chr8:75718415-75718434 None:intergenic 55.0%
CCAAGCTCAAGCCCATTCTG+AGG + Chr8:75718571-75718590 MsG0880046620.01.T01:intron 55.0%
CTTGAGCTTGGGCCTAGGAT+CGG - Chr8:75718562-75718581 None:intergenic 55.0%
GAAGGGGAGAAATCGGGAAG+TGG - Chr8:75718492-75718511 None:intergenic 55.0%
GAGAAATCGGGAAGTGGTGG+TGG - Chr8:75718486-75718505 None:intergenic 55.0%
GAGGCTTGTGCCCAAGAAGA+AGG + Chr8:75716631-75716650 MsG0880046620.01.T01:CDS 55.0%
GCGATTGAGGAGAAGGCTGA+AGG - Chr8:75718878-75718897 None:intergenic 55.0%
GCTACTCCAGCTGAGTGCAT+TGG - Chr8:75717066-75717085 None:intergenic 55.0%
GGGGGAAGAGGGATGTCAAA+GGG - Chr8:75718465-75718484 None:intergenic 55.0%
TCGGCCATGTCTGCTTATGC+CGG + Chr8:75718911-75718930 MsG0880046620.01.T01:intron 55.0%
TGAAGGTCCAACCGATGAGG+AGG - Chr8:75718861-75718880 None:intergenic 55.0%
TGGGGGAAGAGGGATGTCAA+AGG - Chr8:75718466-75718485 None:intergenic 55.0%
TTGAGCTTGGGCCTAGGATC+GGG - Chr8:75718561-75718580 None:intergenic 55.0%
! CCTCAGAATGGGCTTGAGCT+TGG - Chr8:75718574-75718593 None:intergenic 55.0%
! CTGGTCCCTTCAAGTTCCTC+AGG - Chr8:75719885-75719904 None:intergenic 55.0%
! GAAATCGGGAAGTGGTGGTG+GGG - Chr8:75718484-75718503 None:intergenic 55.0%
! GCTCAAGCCCATTCTGAGGA+AGG + Chr8:75718575-75718594 MsG0880046620.01.T01:intron 55.0%
!! AAATCGGGAAGTGGTGGTGG+GGG - Chr8:75718483-75718502 None:intergenic 55.0%
AATCGCGCCTGCTTCCTCCT+CGG + Chr8:75718892-75718911 MsG0880046620.01.T01:intron 60.0%
AGCAGGCGCGATTGAGGAGA+AGG - Chr8:75718885-75718904 None:intergenic 60.0%
ATGGGCTTGAGCTTGGGCCT+AGG - Chr8:75718567-75718586 None:intergenic 60.0%
GGCATAAGCAGACATGGCCG+AGG - Chr8:75718912-75718931 None:intergenic 60.0%
GGCTGAAGGTCCAACCGATG+AGG - Chr8:75718864-75718883 None:intergenic 60.0%
GGGGAGAAATCGGGAAGTGG+TGG - Chr8:75718489-75718508 None:intergenic 60.0%
! CGCACCGGCATAAGCAGACA+TGG - Chr8:75718918-75718937 None:intergenic 60.0%
! TACGCCCGGGGCACTAGTTA+AGG + Chr8:75717579-75717598 MsG0880046620.01.T01:intron 60.0%
!! GAAGTGGTGGTGGGGGAAGA+GGG - Chr8:75718476-75718495 None:intergenic 60.0%
AACTAGTGCCCCGGGCGTAC+TGG - Chr8:75717578-75717597 None:intergenic 65.0%
GACATGGCCGAGGAGGAAGC+AGG - Chr8:75718902-75718921 None:intergenic 65.0%
GCTGCTGCCTCCTCATCGGT+TGG + Chr8:75718851-75718870 MsG0880046620.01.T01:intron 65.0%
GGAGGAAGCAGGCGCGATTG+AGG - Chr8:75718891-75718910 None:intergenic 65.0%
TACAGCAGTGGCAGGCGCAC+CGG - Chr8:75718933-75718952 None:intergenic 65.0%
!! GGAAGTGGTGGTGGGGGAAG+AGG - Chr8:75718477-75718496 None:intergenic 65.0%
! ATCACCGGCGTCAGTGCCGG+TGG - Chr8:75718412-75718431 None:intergenic 70.0%
!! ACCACCACCGGCACTGACGC+CGG + Chr8:75718405-75718424 MsG0880046620.01.T01:intron 70.0%
!! ACCGGCGTCAGTGCCGGTGG+TGG - Chr8:75718409-75718428 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 75716450 75720005 75716450 ID=MsG0880046620.01;Name=MsG0880046620.01
Chr8 mRNA 75716450 75720005 75716450 ID=MsG0880046620.01.T01;Parent=MsG0880046620.01;Name=MsG0880046620.01.T01;_AED=0.50;_eAED=0.62;_QI=0|0|0|1|1|1|4|0|158
Chr8 exon 75716450 75716482 75716450 ID=MsG0880046620.01.T01:exon:31708;Parent=MsG0880046620.01.T01
Chr8 exon 75716587 75716716 75716587 ID=MsG0880046620.01.T01:exon:31709;Parent=MsG0880046620.01.T01
Chr8 exon 75717522 75717564 75717522 ID=MsG0880046620.01.T01:exon:31710;Parent=MsG0880046620.01.T01
Chr8 exon 75719735 75720005 75719735 ID=MsG0880046620.01.T01:exon:31711;Parent=MsG0880046620.01.T01
Chr8 CDS 75716450 75716482 75716450 ID=MsG0880046620.01.T01:cds;Parent=MsG0880046620.01.T01
Chr8 CDS 75716587 75716716 75716587 ID=MsG0880046620.01.T01:cds;Parent=MsG0880046620.01.T01
Chr8 CDS 75717522 75717564 75717522 ID=MsG0880046620.01.T01:cds;Parent=MsG0880046620.01.T01
Chr8 CDS 75719735 75720005 75719735 ID=MsG0880046620.01.T01:cds;Parent=MsG0880046620.01.T01
Gene Sequence

>MsG0880046620.01.T01

ATGGGTGGAGGAAGATCGGCTCTGCTTGTATTCGAAATAGTTATCGATGGTCATCTGTTGCATCCATATTGCAAGCTGAGGCTTGTGCCCAAGAAGAAGGCTTTACAGGTGAATATTGATAAAGACGTGGCTACTGATATGGACCCATGTGCTGATGAAATAAGCTTAGATATGCAAATGGTCCCTGTAAATATAGCCAGCTTTGGAATGGATTCTCAAATCAAGCATGCTATTGTTGTCAAGGTCATGGGTTGTACTGGTTCTAGAGGACAGGTGACTCAAGTTAGGGTGAAGTTTACAGATGACACTAATCGTCACATTTCCTTTCAAAAAAAAAAAACTAATCGTCACATCCTGAGGAACTTGAAGGGACCAGTTAGAGAAGGAGACACCCTCACCCTGCTTAAGTCTGAGAGAGAAGAAAGAAGGCTGCGCTATAGAAACTCAATGGTCTTGTGCAGGATTAGTCTGGTGTAG

Protein sequence

>MsG0880046620.01.T01

MGGGRSALLVFEIVIDGHLLHPYCKLRLVPKKKALQVNIDKDVATDMDPCADEISLDMQMVPVNIASFGMDSQIKHAIVVKVMGCTGSRGQVTQVRVKFTDDTNRHISFQKKKTNRHILRNLKGPVREGDTLTLLKSEREERRLRYRNSMVLCRISLV*