AlfalfaGEDB | MsG0680034905.01

M. sativa cultivar ZhongmuNo.1 / MsG0680034905.01

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034905.01.T01	XP_003620142.1	97.929	338	7	0	1	338	1	338	0	673

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034905.01.T01	G7KKA6	97.929	338	7	0	1	338	1	338	0.0	673

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000483.01	MsG0680034905.01	0.813144	2.969172e-51	1.923434e-48
MsG0280009447.01	MsG0680034905.01	0.818879	1.556944e-52	1.179735e-49
MsG0380017215.01	MsG0680034905.01	0.836563	8.697532e-57	1.100101e-53
MsG0480021739.01	MsG0680034905.01	0.801089	1.061396e-48	5.024737e-46
MsG0580024602.01	MsG0680034905.01	0.806881	6.631401e-50	3.640535e-47
MsG0580028590.01	MsG0680034905.01	0.811600	6.454704e-51	4.012459e-48

Showing 1 to 6 of 6 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034905.01.T01	MTR_6g077740	97.929	338	7	0	1	338	1	338	0.0	673
MsG0680034905.01.T01	MTR_1g037450	42.647	340	145	10	22	338	39	351	1.31e-65	211

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034905.01.T01	AT5G23130	41.593	339	164	8	24	338	69	397	6.36e-67	216
MsG0680034905.01.T01	AT5G08200	42.690	342	160	10	24	338	77	409	1.08e-60	200

Showing 1 to 2 of 2 entries

Previous1Next

Find 119 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGTAAATTTGTTGACT+TGG	0.448318	6:-96476358	None:intergenic
AAAGAAGGTAATAGTAGTAA+TGG	0.478086	6:+96476531	MsG0680034905.01.T01:CDS
AAAGCTGATGTTGATAATGG+TGG	0.661855	6:+96476486	MsG0680034905.01.T01:CDS
AAATGAAAGAAAGTTGATAT+TGG	0.367776	6:-96473890	None:intergenic
AACAAACAAATTACACGCGT+AGG	0.642297	6:+96476939	MsG0680034905.01.T01:three_prime_UTR
AACATGTTTACAAATTTAAA+TGG	0.253054	6:-96477283	None:intergenic
AACGGCGGTGGAAGTGGTGG+TGG	0.476041	6:+96474085	MsG0680034905.01.T01:CDS
AACTCTTATATTCATAAATG+TGG	0.534507	6:-96477100	None:intergenic
AAGATAGGCTTGGAAATGGT+TGG	0.541213	6:-96476777	None:intergenic
AATAGTAGTAATGGATCAAA+CGG	0.512355	6:+96476540	MsG0680034905.01.T01:CDS

Showing 1 to 10 of 119 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCAGTGTAGTAAAATAG+CGG	-	Chr6:96475858-96475877	None:intergenic	30.0%
AACATAACTAAGTCAAAAGG+AGG	+	Chr6:96475535-96475554	MsG0680034905.01.T01:intron	30.0%
AATATGATAGTACCTCAACT+TGG	-	Chr6:96475381-96475400	None:intergenic	30.0%
AATCACTGTCAAACTCTAAA+AGG	-	Chr6:96475644-96475663	None:intergenic	30.0%
ACATAACTAAGTCAAAAGGA+GGG	+	Chr6:96475536-96475555	MsG0680034905.01.T01:intron	30.0%
AGCTACCTGAATAATTACAA+GGG	-	Chr6:96475246-96475265	None:intergenic	30.0%
AGTATATGTATATAGTCTGG+AGG	-	Chr6:96477257-96477276	None:intergenic	30.0%
CTCAAAAAATTTAAGGAGAG+CGG	-	Chr6:96475056-96475075	None:intergenic	30.0%
GAAATCCCTTGTAATTATTC+AGG	+	Chr6:96475238-96475257	MsG0680034905.01.T01:intron	30.0%
GGTTAGATTCTATTTCAGTA+GGG	+	Chr6:96476649-96476668	MsG0680034905.01.T01:CDS	30.0%

Showing 1 to 10 of 251 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	96473845	96477319	96473845	ID=MsG0680034905.01;Name=MsG0680034905.01
Chr6	mRNA	96473845	96477319	96473845	ID=MsG0680034905.01.T01;Parent=MsG0680034905.01;Name=MsG0680034905.01.T01;_AED=0.27;_eAED=0.27;_QI=216\|1\|1\|1\|0.5\|1\|3\|465\|338
Chr6	exon	96473845	96474195	96473845	ID=MsG0680034905.01.T01:exon:6877;Parent=MsG0680034905.01.T01
Chr6	exon	96475260	96475387	96475260	ID=MsG0680034905.01.T01:exon:6878;Parent=MsG0680034905.01.T01
Chr6	exon	96476101	96477319	96476101	ID=MsG0680034905.01.T01:exon:6879;Parent=MsG0680034905.01.T01
Chr6	five_prime_UTR	96473845	96474060	96473845	ID=MsG0680034905.01.T01:five_prime_utr;Parent=MsG0680034905.01.T01
Chr6	CDS	96474061	96474195	96474061	ID=MsG0680034905.01.T01:cds;Parent=MsG0680034905.01.T01
Chr6	CDS	96475260	96475387	96475260	ID=MsG0680034905.01.T01:cds;Parent=MsG0680034905.01.T01
Chr6	CDS	96476101	96476854	96476101	ID=MsG0680034905.01.T01:cds;Parent=MsG0680034905.01.T01
Chr6	three_prime_UTR	96476855	96477319	96476855	ID=MsG0680034905.01.T01:three_prime_utr;Parent=MsG0680034905.01.T01

Gene Sequence

>MsG0680034905.01.T01

ATGTCGCCGTCAAATGGGTTGTGTAACGGCGGTGGAAGTGGTGGTGGTGTTAATGGAAATGGGTTGAGTTATATTGAACATCATGTTTCAAAATTTGATACTCTTGCTGGTGTTGCTATTAAGTATGGTGTTGAGGTAGCTGATGTCAAAAGGATGAATGGTTTGGCCTCAGATCTTCAAATGTTTGCACTGAAGACTTTGAGAATTCCACTACCAGGACGACATCCACCGTCTCCGGTTCCTGATGAACCTGCCAAGTTGAGAGATAATAGCAGCGAAAGAAGACCTCCCCGCAATGGTCAATCTGCGATGAAGGAACCTCTCCAGTCCTTAAGACTGAAACCGCCTAAACAGAAGATTTCTCCAGCCATGACCATTTTACAGAAATACTATGGACTCGACTCGTCAAATTCCAGAGATAAATCTGGAGAAACAGAATTGGCGATGTATACATCTTCTACTTCAGATCATTCCAGAGACGACTGGCTTCCAAAACCCTCACCGATTCCAAACAATCATTCCAAGTCAACAAATTTACCGTTTGATCTACTGACCGGGAACGATGAAGTGTCAGAGTATATGTGTTTTACAGATATCAGCGACGGGGGAGGTGATAAGTCTGACGAGAAATCCGTCCGCAGACGTCAAAAAGCTGATGTTGATAATGGTGGTACTACACCAGAAAGGCTTTTCAAAGAAGGTAATAGTAGTAATGGATCAAACGGTTCTTCCTCCTCTGGAAAAACATTTTCCATGAGGCCGAAATCAGCTAGTCGAGCCTCTCTGTTTCCAGAGTCTTCAGATTCAGGATGGTTAGATTCTATTTCAGTAGGGTTAGGAGATTCAATATTTGTCGATGGACTATCTGGAGTGCGCAAATCGTCGAGCGCATCAAGCCTCAGAGAGCAGGAAAAGTATAATTCAGCAGCAACAGCATGGCCAACCATTTCCAAGCCTATCTTTGATGGCTTACCTATCCCAATAACCGGACGCAGAAGTAAAACTGCCCTTGATTAA

Protein sequence

>MsG0680034905.01.T01

MSPSNGLCNGGGSGGGVNGNGLSYIEHHVSKFDTLAGVAIKYGVEVADVKRMNGLASDLQMFALKTLRIPLPGRHPPSPVPDEPAKLRDNSSERRPPRNGQSAMKEPLQSLRLKPPKQKISPAMTILQKYYGLDSSNSRDKSGETELAMYTSSTSDHSRDDWLPKPSPIPNNHSKSTNLPFDLLTGNDEVSEYMCFTDISDGGGDKSDEKSVRRRQKADVDNGGTTPERLFKEGNSSNGSNGSSSSGKTFSMRPKSASRASLFPESSDSGWLDSISVGLGDSIFVDGLSGVRKSSSASSLREQEKYNSAATAWPTISKPIFDGLPIPITGRRSKTALD*