AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017215.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017215.01.T01 MTR_3g103090 64.935 308 71 6 8 310 83 358 7.67e-111 329
MsG0380017215.01.T01 MTR_3g103090 64.935 308 71 6 8 310 83 358 8.74e-111 328
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017215.01.T01 AT1G27760 40.895 313 139 8 8 310 68 344 2.84e-66 214
MsG0380017215.01.T01 AT1G27760 40.895 313 139 8 8 310 83 359 3.88e-66 214
MsG0380017215.01.T01 AT1G27760 40.895 313 139 8 8 310 79 355 4.84e-66 214

Find 61 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATACATTGGAACCTAATT+TGG 0.073567 3:-93414440 None:intergenic
ATATGATGCAGTGCTTTATT+TGG 0.136234 3:+93416836 MsG0380017215.01.T01:CDS
CTGACTATTAAGATCTTTCT+TGG 0.273029 3:-93415779 None:intergenic
ATATTCTTACAAGGATTAAA+AGG 0.280325 3:+93415700 MsG0380017215.01.T01:CDS
TTGGGATTCAATTATTCATT+TGG 0.295836 3:+93416855 MsG0380017215.01.T01:CDS
ATTTCATCCATTAGGTTGTT+TGG 0.299485 3:+93414128 MsG0380017215.01.T01:intron
CGGCCATTATTCAGTCAATA+TGG 0.334875 3:+93416785 MsG0380017215.01.T01:CDS
GAAGAATCTGTTACCCCATT+TGG 0.339626 3:+93414192 MsG0380017215.01.T01:CDS
ATCTAGAAGACCGGATAAAT+AGG 0.347265 3:-93415536 None:intergenic
CCGCTGATTGCTGTGTTGTC+TGG 0.353005 3:+93416895 MsG0380017215.01.T01:CDS
TATGATGCAGTGCTTTATTT+GGG 0.371826 3:+93416837 MsG0380017215.01.T01:CDS
GAACCTGTTCAGAGATATCT+TGG 0.374329 3:+93415804 MsG0380017215.01.T01:CDS
GTAGTTGCAGTCAAACCTTC+TGG 0.375095 3:+93414603 MsG0380017215.01.T01:CDS
CATACATTGGAACCTAATTT+GGG 0.377504 3:-93414439 None:intergenic
CTTGGCTATAATCACTTTGT+TGG 0.389267 3:+93414358 MsG0380017215.01.T01:CDS
AACAATGTCCATCATGCTTC+CGG 0.393663 3:+93414767 MsG0380017215.01.T01:CDS
TGTCGATTTATACCTCTTAC+CGG 0.393699 3:-93414786 None:intergenic
CGAGTGATCCATCCCAAATT+AGG 0.396381 3:+93414427 MsG0380017215.01.T01:CDS
AGATGCAAGAGTTATCTCTT+TGG 0.428662 3:-93414028 None:intergenic
CATCCATATTGACTGAATAA+TGG 0.431054 3:-93416788 None:intergenic
AATCCAAGATATCTCTGAAC+AGG 0.433115 3:-93415807 None:intergenic
TCCATCATGCTTCCGGTAAG+AGG 0.436360 3:+93414774 MsG0380017215.01.T01:CDS
TCTGTGGAGGCTGGTGGAAA+AGG 0.441263 3:+93415751 MsG0380017215.01.T01:CDS
CTAACACGAGATTCTCCAAA+TGG 0.444572 3:-93414207 None:intergenic
TGTATAGTTGCTGGACTGCT+TGG 0.454319 3:+93414340 MsG0380017215.01.T01:intron
GGCTATAATCACTTTGTTGG+AGG 0.466300 3:+93414361 MsG0380017215.01.T01:CDS
CGAAGTAGATTCGCGTACTA+CGG 0.466555 3:+93416940 MsG0380017215.01.T01:three_prime_UTR
GGATGAGACATGAGTTTAAG+TGG 0.479097 3:+93416806 MsG0380017215.01.T01:CDS
TAACACGAGATTCTCCAAAT+GGG 0.492544 3:-93414206 None:intergenic
AGTTCAATAGCCTATTTATC+CGG 0.495022 3:+93415526 MsG0380017215.01.T01:intron
ATCACTTGCATTCTTAGCCT+CGG 0.503479 3:-93415641 None:intergenic
AGAAGAAACAGAGCGATCAA+TGG 0.515869 3:+93414393 MsG0380017215.01.T01:CDS
GTCTTCTTTATCTAGAAGAC+CGG 0.516274 3:-93415545 None:intergenic
AATTGCTGCTGGTGAAGCAC+TGG 0.528366 3:+93415579 MsG0380017215.01.T01:CDS
GGTTGTTTGGCCTTGACAGT+TGG 0.528556 3:+93414141 MsG0380017215.01.T01:intron
AATCAACAGGGCAGGAACTT+CGG 0.529037 3:+93416765 MsG0380017215.01.T01:intron
GCTATAATCACTTTGTTGGA+GGG 0.530466 3:+93414362 MsG0380017215.01.T01:CDS
GCAGTTATTAATTAGCCAGA+AGG 0.537587 3:-93414618 None:intergenic
AATCTTTCTGTGGAGGCTGG+TGG 0.542256 3:+93415745 MsG0380017215.01.T01:CDS
TGAAGCTGAATTCAAAACAT+TGG 0.544268 3:+93414685 MsG0380017215.01.T01:CDS
ACTCTTGCATCTCAAGCCAT+TGG 0.544297 3:+93414039 MsG0380017215.01.T01:CDS
GAAAGTTACATATTCTTACA+AGG 0.545343 3:+93415691 MsG0380017215.01.T01:CDS
ACCTCTTACCGGAAGCATGA+TGG 0.546793 3:-93414775 None:intergenic
CATTGGAACCTAATTTGGGA+TGG 0.553532 3:-93414435 None:intergenic
TAACTGCTGTGGTGTCTGCA+TGG 0.566660 3:+93414634 MsG0380017215.01.T01:CDS
GTCTTCTAGATAAAGAAGAC+AGG 0.574234 3:+93415548 MsG0380017215.01.T01:CDS
TGAATTCAAAACATTGGCAA+AGG 0.585766 3:+93414691 MsG0380017215.01.T01:CDS
AAGAATATGTAACTTTCCTG+TGG 0.588647 3:-93415685 None:intergenic
TCAGATTGCCTACGGTAGAG+AGG 0.593998 3:-93414665 None:intergenic
AGAAAGATCTTAATAGTCAG+AGG 0.594407 3:+93415782 MsG0380017215.01.T01:CDS
ATTCAGCTTCAGATTGCCTA+CGG 0.596364 3:-93414673 None:intergenic
AGGTCAGTAAGAATTGCTGC+TGG 0.620402 3:+93415568 MsG0380017215.01.T01:CDS
TCTGTTCTCCTCTCTACCGT+AGG 0.620530 3:+93414657 MsG0380017215.01.T01:CDS
ATCACTACATCCAACTGTCA+AGG 0.621289 3:-93414151 None:intergenic
AGCGATCAATGGACATAATG+TGG 0.622561 3:+93414404 MsG0380017215.01.T01:CDS
TCAAGAAGAGAGTAAACCAC+AGG 0.630235 3:+93415669 MsG0380017215.01.T01:CDS
GATGAGACATGAGTTTAAGT+GGG 0.636453 3:+93416807 MsG0380017215.01.T01:CDS
AAAACAAATAAATCACAGCA+TGG 0.639636 3:-93413937 None:intergenic
AACACGAGATTCTCCAAATG+GGG 0.642758 3:-93414205 None:intergenic
TGGCTAATTAATAACTGCTG+TGG 0.655627 3:+93414623 MsG0380017215.01.T01:CDS
CCAGACAACACAGCAATCAG+CGG 0.682498 3:-93416895 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGCTTTTTTTTTTTTTTTT+TGG + Chr3:93416206-93416225 MsG0380017215.01.T01:intron 10.0%
!! ACATACATTATATATGAAAA+AGG - Chr3:93414085-93414104 None:intergenic 15.0%
!! ACTAAATTATTAGGAAAAAA+GGG + Chr3:93415270-93415289 MsG0380017215.01.T01:intron 15.0%
!! ATATACATCAAAAACATAAA+AGG - Chr3:93414296-93414315 None:intergenic 15.0%
!! ATTTGCTTATATTTAGATTT+AGG - Chr3:93415296-93415315 None:intergenic 15.0%
!! TAAATAAATGAAAGAAAACA+AGG - Chr3:93416044-93416063 None:intergenic 15.0%
!! TCAAATAATAGTAACAATAA+GGG - Chr3:93415869-93415888 None:intergenic 15.0%
!!! CAAAATAAGTTGAAAAATAT+CGG - Chr3:93415176-93415195 None:intergenic 15.0%
!!! CAACTTATTTTGATAATTTA+AGG + Chr3:93415184-93415203 MsG0380017215.01.T01:intron 15.0%
!! ACATAATTTCACACTTATTA+AGG - Chr3:93415354-93415373 None:intergenic 20.0%
!! ATATTCTTACAAGGATTAAA+AGG + Chr3:93415700-93415719 MsG0380017215.01.T01:CDS 20.0%
!! CATATTAAATTTCATCCATT+AGG + Chr3:93414120-93414139 MsG0380017215.01.T01:intron 20.0%
!! CTCAAATAATAGTAACAATA+AGG - Chr3:93415870-93415889 None:intergenic 20.0%
!! GACTAAATTATTAGGAAAAA+AGG + Chr3:93415269-93415288 MsG0380017215.01.T01:intron 20.0%
!!! AACTTTTGAAAAATAAAGCA+TGG - Chr3:93414915-93414934 None:intergenic 20.0%
!!! AAGAAAAAGTATCTAAACAA+TGG + Chr3:93416350-93416369 MsG0380017215.01.T01:intron 20.0%
!!! ACTCTATTTTTTTCTTTCTA+TGG - Chr3:93415047-93415066 None:intergenic 20.0%
!!! ATTGTTTAGATACTTTTTCT+TGG - Chr3:93416351-93416370 None:intergenic 20.0%
!!! CATTCTTACTATATTTTGTT+AGG + Chr3:93416585-93416604 MsG0380017215.01.T01:intron 20.0%
!!! CTCTATTTTTTTCTTTCTAT+GGG - Chr3:93415046-93415065 None:intergenic 20.0%
!!! TGTATTTTTACTTATAGTAG+AGG + Chr3:93415371-93415390 MsG0380017215.01.T01:intron 20.0%
!!! TTGTTTAGATACTTTTTCTT+GGG - Chr3:93416350-93416369 None:intergenic 20.0%
!!! TTTTTCCTAATAATTTAGTC+CGG - Chr3:93415269-93415288 None:intergenic 20.0%
! AAAAACATAAAAGGAGAACA+GGG - Chr3:93414287-93414306 None:intergenic 25.0%
! AAAACAAATAAATCACAGCA+TGG - Chr3:93413940-93413959 None:intergenic 25.0%
! AATAAAAAAGGGATCAAAGA+AGG + Chr3:93413999-93414018 MsG0380017215.01.T01:CDS 25.0%
! AATTTCACACTTATTAAGGA+TGG - Chr3:93415350-93415369 None:intergenic 25.0%
! AGCTGTCAAAAAATAAAGTA+GGG - Chr3:93416980-93416999 None:intergenic 25.0%
! AGGAATACAAATCTATATGT+AGG - Chr3:93415453-93415472 None:intergenic 25.0%
! ATTTAGTCAAAATCTACCAA+TGG - Chr3:93414058-93414077 None:intergenic 25.0%
! GAAAGTTACATATTCTTACA+AGG + Chr3:93415691-93415710 MsG0380017215.01.T01:CDS 25.0%
! GCATGGAAAATAAAATCAAT+AGG - Chr3:93415506-93415525 None:intergenic 25.0%
! GTGTTAGAAGTAAAAATGTT+CGG + Chr3:93414223-93414242 MsG0380017215.01.T01:intron 25.0%
! TAATTAAGTGATTTAAGCAG+TGG - Chr3:93414849-93414868 None:intergenic 25.0%
! TACAAATCTATATGTAGGAT+AGG - Chr3:93415448-93415467 None:intergenic 25.0%
! TAGCTGTCAAAAAATAAAGT+AGG - Chr3:93416981-93417000 None:intergenic 25.0%
! TGTCTTGCTTCAATAAAAAA+GGG + Chr3:93413988-93414007 MsG0380017215.01.T01:CDS 25.0%
! TTGGGATTCAATTATTCATT+TGG + Chr3:93416855-93416874 MsG0380017215.01.T01:CDS 25.0%
!! ATGTAATCCCACTTATATTT+TGG + Chr3:93415134-93415153 MsG0380017215.01.T01:intron 25.0%
!! TAATTTAAGGTTTAGAGTCT+TGG + Chr3:93415197-93415216 MsG0380017215.01.T01:intron 25.0%
!! TTGATCAATTTGAAACTGTT+TGG + Chr3:93414933-93414952 MsG0380017215.01.T01:intron 25.0%
!!! ATTTTAACAGATGCATACAT+TGG - Chr3:93414455-93414474 None:intergenic 25.0%
!!! TTTTGTTCCTTTAATTTGAC+TGG + Chr3:93416728-93416747 MsG0380017215.01.T01:intron 25.0%
AAATGCTACTGTACATCATA+CGG - Chr3:93416647-93416666 None:intergenic 30.0%
AACAGCAACCAAAATATAAG+TGG - Chr3:93415145-93415164 None:intergenic 30.0%
AAGAATATGTAACTTTCCTG+TGG - Chr3:93415688-93415707 None:intergenic 30.0%
AAGGAATCCAGTCAAATTAA+AGG - Chr3:93416738-93416757 None:intergenic 30.0%
AATCTATATGTAGGATAGGT+AGG - Chr3:93415444-93415463 None:intergenic 30.0%
ACAGCAACCAAAATATAAGT+GGG - Chr3:93415144-93415163 None:intergenic 30.0%
ACTTATGAATAAGAGTCAGA+AGG + Chr3:93415904-93415923 MsG0380017215.01.T01:intron 30.0%
AGAAACTAAAGACATCTTGT+AGG - Chr3:93416325-93416344 None:intergenic 30.0%
AGAAAGATCTTAATAGTCAG+AGG + Chr3:93415782-93415801 MsG0380017215.01.T01:CDS 30.0%
AGTTCAATAGCCTATTTATC+CGG + Chr3:93415526-93415545 MsG0380017215.01.T01:intron 30.0%
ATCTATATGTAGGATAGGTA+GGG - Chr3:93415443-93415462 None:intergenic 30.0%
CAAAAACATAAAAGGAGAAC+AGG - Chr3:93414288-93414307 None:intergenic 30.0%
CATACATTGGAACCTAATTT+GGG - Chr3:93414442-93414461 None:intergenic 30.0%
CCAATCTTCATTGAAATTTC+AGG - Chr3:93415973-93415992 None:intergenic 30.0%
CCTGAAATTTCAATGAAGAT+TGG + Chr3:93415970-93415989 MsG0380017215.01.T01:intron 30.0%
CTGACTATTAAGATCTTTCT+TGG - Chr3:93415782-93415801 None:intergenic 30.0%
CTGTCTTGCTTCAATAAAAA+AGG + Chr3:93413987-93414006 MsG0380017215.01.T01:CDS 30.0%
GAAATTTCAATGAAGATTGG+TGG + Chr3:93415973-93415992 MsG0380017215.01.T01:intron 30.0%
GGAAAATAAAATCAATAGGC+TGG - Chr3:93415502-93415521 None:intergenic 30.0%
TATATGAGTTACATCGTCTA+TGG - Chr3:93414881-93414900 None:intergenic 30.0%
TCAATGCAAAAATCTTTCTG+TGG + Chr3:93415735-93415754 MsG0380017215.01.T01:CDS 30.0%
TCCTTATTGTTGAATCAACA+GGG + Chr3:93416753-93416772 MsG0380017215.01.T01:intron 30.0%
TGAAGCTGAATTCAAAACAT+TGG + Chr3:93414685-93414704 MsG0380017215.01.T01:CDS 30.0%
TGAATTCAAAACATTGGCAA+AGG + Chr3:93414691-93414710 MsG0380017215.01.T01:CDS 30.0%
TGGGATTACATTTCTCTTAA+GGG - Chr3:93415125-93415144 None:intergenic 30.0%
TTCATTAAACATATGCAGGT+TGG + Chr3:93416176-93416195 MsG0380017215.01.T01:intron 30.0%
TTCCTTATTGTTGAATCAAC+AGG + Chr3:93416752-93416771 MsG0380017215.01.T01:intron 30.0%
! ATATGATGCAGTGCTTTATT+TGG + Chr3:93416836-93416855 MsG0380017215.01.T01:CDS 30.0%
! ATTTCATCCATTAGGTTGTT+TGG + Chr3:93414128-93414147 MsG0380017215.01.T01:intron 30.0%
! CATCCATATTGACTGAATAA+TGG - Chr3:93416791-93416810 None:intergenic 30.0%
! CTAAATAAGTCTTGTGATGT+CGG + Chr3:93416412-93416431 MsG0380017215.01.T01:intron 30.0%
! TATTGATAAATTTTCGACCG+AGG + Chr3:93415624-93415643 MsG0380017215.01.T01:CDS 30.0%
! TGATCTTTTATTGTCATGCT+AGG + Chr3:93415936-93415955 MsG0380017215.01.T01:intron 30.0%
!! TATGATGCAGTGCTTTATTT+GGG + Chr3:93416837-93416856 MsG0380017215.01.T01:CDS 30.0%
!! TATTTTAGATTTACTCCCTC+CGG + Chr3:93415247-93415266 MsG0380017215.01.T01:intron 30.0%
!! TCATTTTTGTGTATAGTTGC+TGG + Chr3:93414331-93414350 MsG0380017215.01.T01:intron 30.0%
!!! GAGATATCTTGGATTTTTTG+AGG + Chr3:93415815-93415834 MsG0380017215.01.T01:CDS 30.0%
!!! TTGGATTTTTTGAGGTATGT+TGG + Chr3:93415823-93415842 MsG0380017215.01.T01:intron 30.0%
AAATAAAGGGAAGACAAAGG+TGG - Chr3:93414558-93414577 None:intergenic 35.0%
AAATAGGCTATTGAACTGCA+TGG - Chr3:93415523-93415542 None:intergenic 35.0%
AAGAGGGTCAGAAAAACAAA+AGG - Chr3:93416276-93416295 None:intergenic 35.0%
AAGCTGAAGCGGTAAATAAA+GGG - Chr3:93414571-93414590 None:intergenic 35.0%
AATCCAAGATATCTCTGAAC+AGG - Chr3:93415810-93415829 None:intergenic 35.0%
AATTTCATCAAGCACTTCCT+TGG + Chr3:93416146-93416165 MsG0380017215.01.T01:intron 35.0%
AGATGCAAGAGTTATCTCTT+TGG - Chr3:93414031-93414050 None:intergenic 35.0%
ATCAGCAGATAACAAGTGAA+AGG - Chr3:93416461-93416480 None:intergenic 35.0%
ATCTAGAAGACCGGATAAAT+AGG - Chr3:93415539-93415558 None:intergenic 35.0%
ATGCAAAAATCTTTCTGTGG+AGG + Chr3:93415738-93415757 MsG0380017215.01.T01:CDS 35.0%
CTTGGCTATAATCACTTTGT+TGG + Chr3:93414358-93414377 MsG0380017215.01.T01:CDS 35.0%
GATGAGACATGAGTTTAAGT+GGG + Chr3:93416807-93416826 MsG0380017215.01.T01:CDS 35.0%
GCAGTTATTAATTAGCCAGA+AGG - Chr3:93414621-93414640 None:intergenic 35.0%
GCATACATTGGAACCTAATT+TGG - Chr3:93414443-93414462 None:intergenic 35.0%
GCTATAATCACTTTGTTGGA+GGG + Chr3:93414362-93414381 MsG0380017215.01.T01:CDS 35.0%
GGCAATCTATTCTATAGACT+AGG + Chr3:93415218-93415237 MsG0380017215.01.T01:intron 35.0%
GGTAAATAAAGGGAAGACAA+AGG - Chr3:93414561-93414580 None:intergenic 35.0%
GTCTTCTAGATAAAGAAGAC+AGG + Chr3:93415548-93415567 MsG0380017215.01.T01:CDS 35.0%
GTCTTCTTTATCTAGAAGAC+CGG - Chr3:93415548-93415567 None:intergenic 35.0%
GTGGGATTACATTTCTCTTA+AGG - Chr3:93415126-93415145 None:intergenic 35.0%
TAAAGAGTGATAAGCTGAAG+CGG - Chr3:93414582-93414601 None:intergenic 35.0%
TAACACGAGATTCTCCAAAT+GGG - Chr3:93414209-93414228 None:intergenic 35.0%
TAAGCTGAAGCGGTAAATAA+AGG - Chr3:93414572-93414591 None:intergenic 35.0%
TAGATAAAATGTACTCCCTC+TGG - Chr3:93415397-93415416 None:intergenic 35.0%
TCCTAATAATTTAGTCCGGA+GGG - Chr3:93415265-93415284 None:intergenic 35.0%
TCTATATGTAGGATAGGTAG+GGG - Chr3:93415442-93415461 None:intergenic 35.0%
TGGCTAATTAATAACTGCTG+TGG + Chr3:93414623-93414642 MsG0380017215.01.T01:CDS 35.0%
TTCCTAATAATTTAGTCCGG+AGG - Chr3:93415266-93415285 None:intergenic 35.0%
! AGAAGTAAAAATGTTCGGTG+AGG + Chr3:93414228-93414247 MsG0380017215.01.T01:intron 35.0%
! CTTTTATTGTCATGCTAGGA+TGG + Chr3:93415940-93415959 MsG0380017215.01.T01:intron 35.0%
! GAATAACACTTCACGCATTT+TGG + Chr3:93415015-93415034 MsG0380017215.01.T01:intron 35.0%
! GTTTGGAGTTTCACACAATA+GGG + Chr3:93414950-93414969 MsG0380017215.01.T01:intron 35.0%
! TGTTTGGAGTTTCACACAAT+AGG + Chr3:93414949-93414968 MsG0380017215.01.T01:intron 35.0%
!! TGTCGATTTATACCTCTTAC+CGG - Chr3:93414789-93414808 None:intergenic 35.0%
!!! CACCAATTCAGTTTTGAACA+AGG + Chr3:93416516-93416535 MsG0380017215.01.T01:intron 35.0%
!!! CTGGCTCTAATTTTTGAGAT+TGG + Chr3:93415598-93415617 MsG0380017215.01.T01:CDS 35.0%
!!! GATTTTTTGAGGTATGTTGG+TGG + Chr3:93415826-93415845 MsG0380017215.01.T01:intron 35.0%
AAAAATCTTTCTGTGGAGGC+TGG + Chr3:93415742-93415761 MsG0380017215.01.T01:CDS 40.0%
AAATCAATAGGCTGGAACCA+AGG - Chr3:93415494-93415513 None:intergenic 40.0%
AACAATGTCCATCATGCTTC+CGG + Chr3:93414767-93414786 MsG0380017215.01.T01:CDS 40.0%
AACACGAGATTCTCCAAATG+GGG - Chr3:93414208-93414227 None:intergenic 40.0%
AAGTCGTTGTCCTAATACCA+CGG - Chr3:93416302-93416321 None:intergenic 40.0%
AATGGCGAACATAGAATGTC+TGG + Chr3:93416368-93416387 MsG0380017215.01.T01:intron 40.0%
AGAAGAAACAGAGCGATCAA+TGG + Chr3:93414393-93414412 MsG0380017215.01.T01:CDS 40.0%
AGCGATCAATGGACATAATG+TGG + Chr3:93414404-93414423 MsG0380017215.01.T01:CDS 40.0%
AGTGAAAGGAGAAAATCCAG+CGG - Chr3:93416447-93416466 None:intergenic 40.0%
ATCACTACATCCAACTGTCA+AGG - Chr3:93414154-93414173 None:intergenic 40.0%
ATCACTTGCATTCTTAGCCT+CGG - Chr3:93415644-93415663 None:intergenic 40.0%
ATTCAGCTTCAGATTGCCTA+CGG - Chr3:93414676-93414695 None:intergenic 40.0%
CATTGGAACCTAATTTGGGA+TGG - Chr3:93414438-93414457 None:intergenic 40.0%
CGGCCATTATTCAGTCAATA+TGG + Chr3:93416785-93416804 MsG0380017215.01.T01:CDS 40.0%
CTAACACGAGATTCTCCAAA+TGG - Chr3:93414210-93414229 None:intergenic 40.0%
CTCAATGCCATAGATGATGT+AGG + Chr3:93414822-93414841 MsG0380017215.01.T01:intron 40.0%
GAACCTGTTCAGAGATATCT+TGG + Chr3:93415804-93415823 MsG0380017215.01.T01:CDS 40.0%
GAAGAATCTGTTACCCCATT+TGG + Chr3:93414192-93414211 MsG0380017215.01.T01:CDS 40.0%
GCTTCAGCTTATCACTCTTT+AGG + Chr3:93414581-93414600 MsG0380017215.01.T01:intron 40.0%
GGATGAGACATGAGTTTAAG+TGG + Chr3:93416806-93416825 MsG0380017215.01.T01:CDS 40.0%
GGCTATAATCACTTTGTTGG+AGG + Chr3:93414361-93414380 MsG0380017215.01.T01:CDS 40.0%
GGGGTTCATTAAACATATGC+AGG + Chr3:93416172-93416191 MsG0380017215.01.T01:intron 40.0%
TACTTATAGTAGAGGCCAGA+GGG + Chr3:93415379-93415398 MsG0380017215.01.T01:intron 40.0%
TATTGTTGAATCAACAGGGC+AGG + Chr3:93416757-93416776 MsG0380017215.01.T01:intron 40.0%
TCAAGAAGAGAGTAAACCAC+AGG + Chr3:93415669-93415688 MsG0380017215.01.T01:CDS 40.0%
TCCCTCCGGACTAAATTATT+AGG + Chr3:93415261-93415280 MsG0380017215.01.T01:intron 40.0%
TCCTCTGCACGTAAAAGAAT+AGG - Chr3:93416487-93416506 None:intergenic 40.0%
TTACTTATAGTAGAGGCCAG+AGG + Chr3:93415378-93415397 MsG0380017215.01.T01:intron 40.0%
! ACAAGCTTTTGACAGCAACT+AGG - Chr3:93416234-93416253 None:intergenic 40.0%
! ACCTATTCTTTTACGTGCAG+AGG + Chr3:93416483-93416502 MsG0380017215.01.T01:intron 40.0%
! TAGAATGTCTGGTGGTGAAA+AGG + Chr3:93416379-93416398 MsG0380017215.01.T01:intron 40.0%
! TGCGTGAAGTGTTATTCTAG+TGG - Chr3:93415012-93415031 None:intergenic 40.0%
!! GCCCTGTTGATTCAACAATA+AGG - Chr3:93416757-93416776 None:intergenic 40.0%
!! GGCCTTGTTCAAAACTGAAT+TGG - Chr3:93416521-93416540 None:intergenic 40.0%
!! TTCCTTGTGTAGCTGTTTCT+TGG + Chr3:93415468-93415487 MsG0380017215.01.T01:intron 40.0%
!!! ATTCAGTTTTGAACAAGGCC+AGG + Chr3:93416521-93416540 MsG0380017215.01.T01:intron 40.0%
AATCAACAGGGCAGGAACTT+CGG + Chr3:93416765-93416784 MsG0380017215.01.T01:intron 45.0%
ACCGCTGCTTATTGAGTAAC+TGG - Chr3:93416549-93416568 None:intergenic 45.0%
ACTCTTGCATCTCAAGCCAT+TGG + Chr3:93414039-93414058 MsG0380017215.01.T01:CDS 45.0%
AGGTCAGTAAGAATTGCTGC+TGG + Chr3:93415568-93415587 MsG0380017215.01.T01:CDS 45.0%
ATTCTCTACAGACATCGTCG+TGG + Chr3:93415998-93416017 MsG0380017215.01.T01:intron 45.0%
CAGTGGTCCTACATCATCTA+TGG - Chr3:93414832-93414851 None:intergenic 45.0%
CCCAGTTACTCAATAAGCAG+CGG + Chr3:93416545-93416564 MsG0380017215.01.T01:intron 45.0%
CCGCTGCTTATTGAGTAACT+GGG - Chr3:93416548-93416567 None:intergenic 45.0%
CGAAGTAGATTCGCGTACTA+CGG + Chr3:93416940-93416959 MsG0380017215.01.T01:three_prime_UTR 45.0%
CGAGTGATCCATCCCAAATT+AGG + Chr3:93414427-93414446 MsG0380017215.01.T01:CDS 45.0%
CTTATTGAGTAACTGGGTCC+TGG - Chr3:93416542-93416561 None:intergenic 45.0%
GAGTTACATCGTCTATGGAC+TGG - Chr3:93414876-93414895 None:intergenic 45.0%
GCATAAATGACAGCGAAGCA+AGG - Chr3:93416673-93416692 None:intergenic 45.0%
GTAGTTGCAGTCAAACCTTC+TGG + Chr3:93414603-93414622 MsG0380017215.01.T01:CDS 45.0%
GTCAAGGCCAAACAACCTAA+TGG - Chr3:93414138-93414157 None:intergenic 45.0%
GTCGTGGTCTCAAATGATAC+AGG + Chr3:93416014-93416033 MsG0380017215.01.T01:intron 45.0%
TAAGCAGCGGTTACAATCTG+AGG + Chr3:93416558-93416577 MsG0380017215.01.T01:intron 45.0%
TCATCAAGCACTTCCTTGGA+GGG + Chr3:93416150-93416169 MsG0380017215.01.T01:intron 45.0%
TGTATAGTTGCTGGACTGCT+TGG + Chr3:93414340-93414359 MsG0380017215.01.T01:intron 45.0%
TTCATCAAGCACTTCCTTGG+AGG + Chr3:93416149-93416168 MsG0380017215.01.T01:intron 45.0%
! AGGGACATAGAGAGCTTTGT+TGG + Chr3:93414969-93414988 MsG0380017215.01.T01:intron 45.0%
! TAAGTCTTGTGATGTCGGTG+AGG + Chr3:93416417-93416436 MsG0380017215.01.T01:intron 45.0%
AATCTTTCTGTGGAGGCTGG+TGG + Chr3:93415745-93415764 MsG0380017215.01.T01:CDS 50.0%
AATTGCTGCTGGTGAAGCAC+TGG + Chr3:93415579-93415598 MsG0380017215.01.T01:CDS 50.0%
ATCAAGCACTTCCTTGGAGG+GGG + Chr3:93416152-93416171 MsG0380017215.01.T01:intron 50.0%
CATCAAGCACTTCCTTGGAG+GGG + Chr3:93416151-93416170 MsG0380017215.01.T01:intron 50.0%
CCAGACAACACAGCAATCAG+CGG - Chr3:93416898-93416917 None:intergenic 50.0%
CCTAATACCACGGAGGAAGA+GGG - Chr3:93416292-93416311 None:intergenic 50.0%
GGCCAAGAAACAGCTACACA+AGG - Chr3:93415473-93415492 None:intergenic 50.0%
GGCGAACATAGAATGTCTGG+TGG + Chr3:93416371-93416390 MsG0380017215.01.T01:intron 50.0%
GTTTAATGAACCCCCCTCCA+AGG - Chr3:93416166-93416185 None:intergenic 50.0%
TAACTGCTGTGGTGTCTGCA+TGG + Chr3:93414634-93414653 MsG0380017215.01.T01:CDS 50.0%
TCAGATTGCCTACGGTAGAG+AGG - Chr3:93414668-93414687 None:intergenic 50.0%
TCCATCATGCTTCCGGTAAG+AGG + Chr3:93414774-93414793 MsG0380017215.01.T01:CDS 50.0%
TCCTAATACCACGGAGGAAG+AGG - Chr3:93416293-93416312 None:intergenic 50.0%
TCGTTGTCCTAATACCACGG+AGG - Chr3:93416299-93416318 None:intergenic 50.0%
TCTGTTCTCCTCTCTACCGT+AGG + Chr3:93414657-93414676 MsG0380017215.01.T01:CDS 50.0%
! ACCTCTTACCGGAAGCATGA+TGG - Chr3:93414778-93414797 None:intergenic 50.0%
!! GGTTGTTTGGCCTTGACAGT+TGG + Chr3:93414141-93414160 MsG0380017215.01.T01:intron 50.0%
!! GTGTAGCTGTTTCTTGGCCT+TGG + Chr3:93415474-93415493 MsG0380017215.01.T01:intron 50.0%
CCCTCTTCCTCCGTGGTATT+AGG + Chr3:93416289-93416308 MsG0380017215.01.T01:intron 55.0%
TCAAGCACTTCCTTGGAGGG+GGG + Chr3:93416153-93416172 MsG0380017215.01.T01:intron 55.0%
TCTGTGGAGGCTGGTGGAAA+AGG + Chr3:93415751-93415770 MsG0380017215.01.T01:CDS 55.0%
TTTCTGACCCTCTTCCTCCG+TGG + Chr3:93416282-93416301 MsG0380017215.01.T01:intron 55.0%
! CCGCTGATTGCTGTGTTGTC+TGG + Chr3:93416895-93416914 MsG0380017215.01.T01:CDS 55.0%
ATGTCGGTGAGGACTTCCGC+TGG + Chr3:93416428-93416447 MsG0380017215.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 93413931 93417067 93413931 ID=MsG0380017215.01;Name=MsG0380017215.01
Chr3 mRNA 93413931 93417067 93413931 ID=MsG0380017215.01.T01;Parent=MsG0380017215.01;Name=MsG0380017215.01.T01;_AED=0.37;_eAED=0.41;_QI=0|0.2|0.33|1|0.2|0.16|6|140|325
Chr3 exon 93413931 93414060 93413931 ID=MsG0380017215.01.T01:exon:25335;Parent=MsG0380017215.01.T01
Chr3 exon 93414142 93414231 93414142 ID=MsG0380017215.01.T01:exon:25336;Parent=MsG0380017215.01.T01
Chr3 exon 93414347 93414448 93414347 ID=MsG0380017215.01.T01:exon:25337;Parent=MsG0380017215.01.T01
Chr3 exon 93414603 93414795 93414603 ID=MsG0380017215.01.T01:exon:25338;Parent=MsG0380017215.01.T01
Chr3 exon 93415528 93415836 93415528 ID=MsG0380017215.01.T01:exon:25339;Parent=MsG0380017215.01.T01
Chr3 exon 93416774 93417067 93416774 ID=MsG0380017215.01.T01:exon:25340;Parent=MsG0380017215.01.T01
Chr3 CDS 93413931 93414060 93413931 ID=MsG0380017215.01.T01:cds;Parent=MsG0380017215.01.T01
Chr3 CDS 93414142 93414231 93414142 ID=MsG0380017215.01.T01:cds;Parent=MsG0380017215.01.T01
Chr3 CDS 93414347 93414448 93414347 ID=MsG0380017215.01.T01:cds;Parent=MsG0380017215.01.T01
Chr3 CDS 93414603 93414795 93414603 ID=MsG0380017215.01.T01:cds;Parent=MsG0380017215.01.T01
Chr3 CDS 93415528 93415836 93415528 ID=MsG0380017215.01.T01:cds;Parent=MsG0380017215.01.T01
Chr3 CDS 93416774 93416927 93416774 ID=MsG0380017215.01.T01:cds;Parent=MsG0380017215.01.T01
Chr3 three_prime_UTR 93416928 93417067 93416928 ID=MsG0380017215.01.T01:three_prime_utr;Parent=MsG0380017215.01.T01
Gene Sequence

>MsG0380017215.01.T01

TTGAAACCATGCTGTGATTTATTTGTTTTTATCAGATTTGCTACTTTGTTACATAGCTGTCTTGCTTCAATAAAAAAGGGATCAAAGAAGGCATCTGCCAAAGAGATAACTCTTGCATCTCAAGCCATTGGTTGTTTGGCCTTGACAGTTGGATGTAGTGATAATGCACGCGAGATTTTTGAAGAATCTGTTACCCCATTTGGAGAATCTCGTGTTAGAATTGCTGGACTGCTTGGCTATAATCACTTTGTTGGAGGGAATGATCAAGAAGAAACAGAGCGATCAATGGACATAATGTGGCGAGTGATCCATCCCAAATTAGGTAGTTGCAGTCAAACCTTCTGGCTAATTAATAACTGCTGTGGTGTCTGCATGGTCTGTTCTCCTCTCTACCGTAGGCAATCTGAAGCTGAATTCAAAACATTGGCAAAGGCAAGCACAGTTTATTCTTTTGTTTGCATTGTGATTTCATTTGCTCTACTTAGTAACAATGTCCATCATGCTTCCGGTAAGAGTTCAATAGCCTATTTATCCGGTCTTCTAGATAAAGAAGACAGGTCAGTAAGAATTGCTGCTGGTGAAGCACTGGCTCTAATTTTTGAGATTGGAGCTATTGATAAATTTTCGACCGAGGCTAAGAATGCAAGTGATGCAACTCAAGAAGAGAGTAAACCACAGGAAAGTTACATATTCTTACAAGGATTAAAAGGAAAAGTGATAAATCAATGCAAAAATCTTTCTGTGGAGGCTGGTGGAAAAGGATCTGCCAAGAAAGATCTTAATAGTCAGAGGAACCTGTTCAGAGATATCTTGGATTTTTTGAGGGCAGGAACTTCGGCCATTATTCAGTCAATATGGATGAGACATGAGTTTAAGTGGGAACAAAATATGATGCAGTGCTTTATTTGGGATTCAATTATTCATTTGGACATGTATTTATTGTGTCCGCTGATTGCTGTGTTGTCTGGAAATGTTTGA

Protein sequence

>MsG0380017215.01.T01

LKPCCDLFVFIRFATLLHSCLASIKKGSKKASAKEITLASQAIGCLALTVGCSDNAREIFEESVTPFGESRVRIAGLLGYNHFVGGNDQEETERSMDIMWRVIHPKLGSCSQTFWLINNCCGVCMVCSPLYRRQSEAEFKTLAKASTVYSFVCIVISFALLSNNVHHASGKSSIAYLSGLLDKEDRSVRIAAGEALALIFEIGAIDKFSTEAKNASDATQEESKPQESYIFLQGLKGKVINQCKNLSVEAGGKGSAKKDLNSQRNLFRDILDFLRAGTSAIIQSIWMRHEFKWEQNMMQCFIWDSIIHLDMYLLCPLIAVLSGNV*