AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035343.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035343.01.T01 MTR_6g082340 49.708 171 68 3 37 197 49 211 5.40e-43 144
MsG0680035343.01.T01 MTR_6g082260 49.383 162 63 7 38 188 50 203 1.70e-32 116
MsG0680035343.01.T01 MTR_6g082310 45.963 161 68 5 38 187 50 202 3.05e-31 113
MsG0680035343.01.T01 MTR_5g093740 38.462 169 86 4 38 196 54 214 1.50e-29 114
MsG0680035343.01.T01 MTR_5g093740 32.468 154 81 4 46 189 313 453 1.94e-12 65.9
MsG0680035343.01.T01 MTR_3g061070 34.591 159 88 5 38 187 81 232 4.78e-19 84.7
MsG0680035343.01.T01 MTR_2g027540 31.361 169 99 4 29 187 78 239 4.37e-17 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035343.01.T01 AT5G56075 37.342 158 75 4 41 192 116 255 2.47e-19 83.6
MsG0680035343.01.T01 AT4G26485 34.337 166 104 4 29 189 43 208 1.24e-18 80.5
MsG0680035343.01.T01 AT5G56060 36.943 157 77 6 33 177 3 149 4.49e-18 78.6

Find 40 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCGATCTGTCTGGATTT+GGG 0.238235 6:+102791179 None:intergenic
TTTGGCGATCTGTCTGGATT+TGG 0.271401 6:+102791178 None:intergenic
TTGATCTTCCACTCAGTAAA+TGG 0.272354 6:+102788388 None:intergenic
TGTTATCATAGTTTCCCTAT+TGG 0.304013 6:-102788264 MsG0680035343.01.T01:CDS
TGTGCATAACTTACAGAATC+TGG 0.305326 6:+102788636 None:intergenic
AAAGTACTACTCTTTCCAAT+AGG 0.320713 6:+102788249 None:intergenic
GAGTTTCTAGTGCGGAAGTA+TGG 0.345670 6:-102788820 MsG0680035343.01.T01:CDS
TTGATTGAACTTGAGGGTCT+TGG 0.397209 6:-102788787 MsG0680035343.01.T01:CDS
TGTAGCCGGTGGCGGTTGTA+AGG 0.400513 6:-102788186 None:intergenic
ATTTATTATTCTTGAGATGC+TGG 0.407798 6:+102788719 None:intergenic
TATAATAACAAGAGAGGATC+TGG 0.413996 6:-102788294 MsG0680035343.01.T01:CDS
ATTGGAGTTTATTGAAGAAG+TGG 0.422371 6:-102788343 MsG0680035343.01.T01:CDS
AAGTACTACTCTTTCCAATA+GGG 0.433046 6:+102788250 None:intergenic
CTGGCAAAAGATGGAGGGAT+TGG 0.448039 6:-102788361 MsG0680035343.01.T01:CDS
CTGGATTTGGGGTTGCTCAT+CGG 0.461422 6:+102791191 None:intergenic
ATTGAAGAAGTGGAGTTTCA+AGG 0.461497 6:-102788333 MsG0680035343.01.T01:CDS
CCTCTCTTGTTATTATAACC+TGG 0.475242 6:+102788300 None:intergenic
ATCAAGGATCTGGCAAAAGA+TGG 0.508707 6:-102788370 MsG0680035343.01.T01:CDS
TAGCAACTTGATTGAACTTG+AGG 0.511290 6:-102788794 MsG0680035343.01.T01:CDS
TGAGTGGAAGATCAAGGATC+TGG 0.521381 6:-102788380 MsG0680035343.01.T01:CDS
TTATTGATTGTAGCCGGTGG+CGG 0.526880 6:-102788194 MsG0680035343.01.T01:CDS
CCGGGCCTTACAACCGCCAC+CGG 0.536377 6:+102788181 None:intergenic
AGCAACTTGATTGAACTTGA+GGG 0.556641 6:-102788793 MsG0680035343.01.T01:CDS
ATTTACTGAGTGGAAGATCA+AGG 0.558209 6:-102788386 MsG0680035343.01.T01:CDS
TGGCGATCTGTCTGGATTTG+GGG 0.559164 6:+102791180 None:intergenic
AACATTCACTTCGTGCAAGA+TGG 0.561233 6:+102788759 None:intergenic
ACAAAATTGCAGGCTTCATG+AGG 0.564315 6:-102788494 MsG0680035343.01.T01:intron
AGGATCGGTGTGGATTTCTA+CGG 0.578193 6:-102788474 MsG0680035343.01.T01:CDS
TAGTACTTTCAAATTTGCCA+AGG 0.578937 6:-102788235 MsG0680035343.01.T01:CDS
ATGAGGTTATTGATTGTAGC+CGG 0.578986 6:-102788200 MsG0680035343.01.T01:CDS
AAGGATCTGGCAAAAGATGG+AGG 0.599691 6:-102788367 MsG0680035343.01.T01:CDS
CCAGGTTATAATAACAAGAG+AGG 0.602479 6:-102788300 MsG0680035343.01.T01:CDS
CGAAGTGAATGTTCACAACA+TGG 0.605758 6:-102788749 MsG0680035343.01.T01:CDS
ATTGCAGGCTTCATGAGGAT+CGG 0.618213 6:-102788489 MsG0680035343.01.T01:intron
GTAAAATTGAAACCAGCATG+TGG 0.621947 6:+102788673 None:intergenic
AGGTTATTGATTGTAGCCGG+TGG 0.629115 6:-102788197 MsG0680035343.01.T01:CDS
AGGATCTGGCAAAAGATGGA+GGG 0.639531 6:-102788366 MsG0680035343.01.T01:CDS
TAACTTACAGAATCTGGCAA+TGG 0.641546 6:+102788642 None:intergenic
CAACACATCCATTTACTGAG+TGG 0.685186 6:-102788396 MsG0680035343.01.T01:CDS
AGGCTTCATGAGGATCGGTG+TGG 0.708399 6:-102788484 MsG0680035343.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATATTAAATAAATA+GGG - Chr6:102790253-102790272 MsG0680035343.01.T01:intron 0.0%
!! TAAAAATATATTAAATAAAT+AGG - Chr6:102790252-102790271 MsG0680035343.01.T01:intron 0.0%
!!! ATTTTTTAAAATTATAATTA+TGG + Chr6:102789478-102789497 None:intergenic 0.0%
!!! TTTATTTAATATATTTTTAT+TGG + Chr6:102790251-102790270 None:intergenic 0.0%
!! AACTAAAAAAAACTAATAAA+TGG - Chr6:102790043-102790062 MsG0680035343.01.T01:intron 10.0%
!! TAAAAAAAATATTCTTTAGT+TGG - Chr6:102790398-102790417 MsG0680035343.01.T01:intron 10.0%
!!! TTAAATTTTAATGAATGTTT+TGG - Chr6:102788822-102788841 MsG0680035343.01.T01:CDS 10.0%
!! TATCCAAGTTTATTAAAATA+TGG + Chr6:102790380-102790399 None:intergenic 15.0%
!!! AATATATATTGTCATCTTTT+AGG + Chr6:102788281-102788300 None:intergenic 15.0%
!!! ATATAATCTGAACTATTTTT+TGG + Chr6:102789266-102789285 None:intergenic 15.0%
!!! TATAATCTGAACTATTTTTT+GGG + Chr6:102789265-102789284 None:intergenic 15.0%
!! AAAAAACTAATAAATGGCTT+TGG - Chr6:102790049-102790068 MsG0680035343.01.T01:intron 20.0%
!! AAAATGTGAATACTATTGAT+TGG - Chr6:102789493-102789512 MsG0680035343.01.T01:intron 20.0%
!! AACAACGTAAAATAATATCA+TGG + Chr6:102788774-102788793 None:intergenic 20.0%
!! TTAAAAAATCATTGTAACAC+CGG + Chr6:102790862-102790881 None:intergenic 20.0%
!! TTTATTGGATAAAACACTTA+CGG + Chr6:102790236-102790255 None:intergenic 20.0%
!!! AATTCGCACAAAAAATATTT+TGG + Chr6:102788219-102788238 None:intergenic 20.0%
!!! ACTCCATATTTTAATAAACT+TGG - Chr6:102790374-102790393 MsG0680035343.01.T01:intron 20.0%
!!! AGTGACTTTATAAATTTGTT+TGG + Chr6:102789436-102789455 None:intergenic 20.0%
!!! ATAATCTGAACTATTTTTTG+GGG + Chr6:102789264-102789283 None:intergenic 20.0%
!!! ATCGATTACAATATGATTTT+GGG - Chr6:102789204-102789223 MsG0680035343.01.T01:intron 20.0%
!!! ATGAATATATAGACACATTT+TGG + Chr6:102789559-102789578 None:intergenic 20.0%
!!! GATTTTTTAAACAAAATTGC+AGG - Chr6:102790872-102790891 MsG0680035343.01.T01:intron 20.0%
!!! GTGACTTTATAAATTTGTTT+GGG + Chr6:102789435-102789454 None:intergenic 20.0%
!!! TTCCAATTAAACATTTTATG+CGG - Chr6:102789517-102789536 MsG0680035343.01.T01:intron 20.0%
!!! TTTTATACATTTCGTATGTA+TGG + Chr6:102788344-102788363 None:intergenic 20.0%
! AAGAAATGAAACATATCAAG+AGG - Chr6:102790164-102790183 MsG0680035343.01.T01:intron 25.0%
! AGAATCATGTTCTCTATATT+TGG - Chr6:102788605-102788624 MsG0680035343.01.T01:intron 25.0%
! AGTAACCTATGTAACAAAAT+AGG + Chr6:102790008-102790027 None:intergenic 25.0%
! ATATCAAGAGGAATTGAAAA+TGG - Chr6:102790176-102790195 MsG0680035343.01.T01:intron 25.0%
! ATGGAATGAAACATATTATC+AGG - Chr6:102790195-102790214 MsG0680035343.01.T01:intron 25.0%
! ATTTATTATTCTTGAGATGC+TGG + Chr6:102790660-102790679 None:intergenic 25.0%
! ATTTCGGAAATACATTTGTT+TGG + Chr6:102789292-102789311 None:intergenic 25.0%
! CTTTCTATATAAGTTACAGA+TGG - Chr6:102789964-102789983 MsG0680035343.01.T01:intron 25.0%
! GAATCATGTTCTCTATATTT+GGG - Chr6:102788606-102788625 MsG0680035343.01.T01:intron 25.0%
! GTTATATCTTCCCTAATTAA+TGG - Chr6:102790441-102790460 MsG0680035343.01.T01:intron 25.0%
! TACGAAATGTATAAAAGAGA+AGG - Chr6:102788348-102788367 MsG0680035343.01.T01:CDS 25.0%
!! AAGATGAGAAGATTTAAGTT+TGG - Chr6:102788743-102788762 MsG0680035343.01.T01:CDS 25.0%
!! ATTGTTATGTTACTTCTTCT+AGG + Chr6:102788579-102788598 None:intergenic 25.0%
!! TCCAATTAAACATTTTATGC+GGG - Chr6:102789518-102789537 MsG0680035343.01.T01:intron 25.0%
!!! AACTATTTTTTGGGGATTTT+TGG + Chr6:102789256-102789275 None:intergenic 25.0%
!!! CATCGATTACAATATGATTT+TGG - Chr6:102789203-102789222 MsG0680035343.01.T01:intron 25.0%
!!! TAAACTCATATGAAAGTGTT+CGG - Chr6:102788549-102788568 MsG0680035343.01.T01:intron 25.0%
!!! TACAATATGATTTTGGGTTT+TGG - Chr6:102789210-102789229 MsG0680035343.01.T01:intron 25.0%
!!! TATATTTTGAATGCTCAACT+TGG - Chr6:102790337-102790356 MsG0680035343.01.T01:intron 25.0%
!!! TTTAGCTCATTTTCAACAAA+TGG + Chr6:102789911-102789930 None:intergenic 25.0%
AAAACACAGCACCATTAATT+AGG + Chr6:102790455-102790474 None:intergenic 30.0%
AAAATATACCTCTACTATCG+AGG + Chr6:102790325-102790344 None:intergenic 30.0%
AAACACAGCACCATTAATTA+GGG + Chr6:102790454-102790473 None:intergenic 30.0%
AAATATACCTCTACTATCGA+GGG + Chr6:102790324-102790343 None:intergenic 30.0%
AAATTGTTGTGCAGTTTATG+TGG - Chr6:102789149-102789168 MsG0680035343.01.T01:intron 30.0%
AAGTACTACTCTTTCCAATA+GGG + Chr6:102791129-102791148 None:intergenic 30.0%
AATGTGTTGTATCAAACATG+AGG + Chr6:102789867-102789886 None:intergenic 30.0%
AATTGTTGTGCAGTTTATGT+GGG - Chr6:102789150-102789169 MsG0680035343.01.T01:intron 30.0%
ACATCCAAAGAAATTGTAGA+AGG + Chr6:102789086-102789105 None:intergenic 30.0%
ATGTATTTCCGAAATTGAGT+AGG - Chr6:102789297-102789316 MsG0680035343.01.T01:intron 30.0%
ATTGGAGTTTATTGAAGAAG+TGG - Chr6:102791033-102791052 MsG0680035343.01.T01:intron 30.0%
CATGAATGTTTAGAAGATGA+AGG + Chr6:102788253-102788272 None:intergenic 30.0%
GAACTCATTTCAGACTATTT+CGG + Chr6:102788910-102788929 None:intergenic 30.0%
GCACATAAGTCATATTATCA+TGG - Chr6:102790091-102790110 MsG0680035343.01.T01:intron 30.0%
GGATGTAGGTTATTATATCA+TGG - Chr6:102789100-102789119 MsG0680035343.01.T01:intron 30.0%
TAGTACTTTCAAATTTGCCA+AGG - Chr6:102791141-102791160 MsG0680035343.01.T01:intron 30.0%
TATAATAACAAGAGAGGATC+TGG - Chr6:102791082-102791101 MsG0680035343.01.T01:intron 30.0%
TATAGTCTAGGAATGTTCTA+TGG - Chr6:102789043-102789062 MsG0680035343.01.T01:intron 30.0%
TCGGATTATATGATCTGAAT+CGG + Chr6:102788891-102788910 None:intergenic 30.0%
TCTACAATTTCTTTGGATGT+AGG - Chr6:102789086-102789105 MsG0680035343.01.T01:intron 30.0%
TGTATTTCCGAAATTGAGTA+GGG - Chr6:102789298-102789317 MsG0680035343.01.T01:intron 30.0%
TGTTATCATAGTTTCCCTAT+TGG - Chr6:102791112-102791131 MsG0680035343.01.T01:intron 30.0%
TTTGACTGTAGTTATAGTCT+AGG - Chr6:102789031-102789050 MsG0680035343.01.T01:intron 30.0%
! AAAAACATGCTTTCTTTTGG+AGG - Chr6:102790934-102790953 MsG0680035343.01.T01:intron 30.0%
! AAAGTACTACTCTTTCCAAT+AGG + Chr6:102791130-102791149 None:intergenic 30.0%
! AAATCATTGTTGACTAGTCA+AGG - Chr6:102788405-102788424 MsG0680035343.01.T01:CDS 30.0%
! AATAAAGTTTGATTCGACCT+AGG - Chr6:102788693-102788712 MsG0680035343.01.T01:CDS 30.0%
! AATAAATAGGGAAAAGCATG+TGG - Chr6:102790265-102790284 MsG0680035343.01.T01:intron 30.0%
! AATCATTGTTGACTAGTCAA+GGG - Chr6:102788406-102788425 MsG0680035343.01.T01:CDS 30.0%
! ATTTTTATGAAAGACCAACG+AGG - Chr6:102788298-102788317 MsG0680035343.01.T01:CDS 30.0%
! CCAATTAAACATTTTATGCG+GGG - Chr6:102789519-102789538 MsG0680035343.01.T01:intron 30.0%
! GATCACCTATTTTGTTACAT+AGG - Chr6:102790000-102790019 MsG0680035343.01.T01:intron 30.0%
! GCTAAAAACATGCTTTCTTT+TGG - Chr6:102790931-102790950 MsG0680035343.01.T01:intron 30.0%
! TATCCTTTTCTCTACCATTT+TGG + Chr6:102789634-102789653 None:intergenic 30.0%
! TCATGTTCTTTTCAACTAAG+TGG - Chr6:102790115-102790134 MsG0680035343.01.T01:intron 30.0%
! TTTCAAGGATCATTTTATCC+AGG - Chr6:102791058-102791077 MsG0680035343.01.T01:intron 30.0%
! TTTTTATGAAAGACCAACGA+GGG - Chr6:102788299-102788318 MsG0680035343.01.T01:CDS 30.0%
!! ATATAGACACATTTTGGTGT+TGG + Chr6:102789553-102789572 None:intergenic 30.0%
!! ATCTTTAATTTTCCACATGC+TGG - Chr6:102790691-102790710 MsG0680035343.01.T01:intron 30.0%
!!! ATTTGCCAAGGAGAATTTTT+TGG - Chr6:102791153-102791172 MsG0680035343.01.T01:intron 30.0%
!!! ATTTTGAAGAGTTTCTAGTG+CGG - Chr6:102790548-102790567 MsG0680035343.01.T01:intron 30.0%
!!! ATTTTTTGTGCGAATTTGCA+AGG - Chr6:102788223-102788242 MsG0680035343.01.T01:CDS 30.0%
AAGCACTTGAATTGCCAAAA+TGG - Chr6:102789617-102789636 MsG0680035343.01.T01:intron 35.0%
AGATTAAACATGCGTCTGTA+TGG - Chr6:102790820-102790839 MsG0680035343.01.T01:intron 35.0%
AGCAACTTGATTGAACTTGA+GGG - Chr6:102790583-102790602 MsG0680035343.01.T01:intron 35.0%
ATCCAGACTTTAGATACATG+TGG - Chr6:102789784-102789803 MsG0680035343.01.T01:intron 35.0%
ATCTTGAAATGACTAGACCA+AGG + Chr6:102788669-102788688 None:intergenic 35.0%
ATTGAAGAAGTGGAGTTTCA+AGG - Chr6:102791043-102791062 MsG0680035343.01.T01:intron 35.0%
ATTTACTGAGTGGAAGATCA+AGG - Chr6:102790990-102791009 MsG0680035343.01.T01:intron 35.0%
CCAGGTTATAATAACAAGAG+AGG - Chr6:102791076-102791095 MsG0680035343.01.T01:intron 35.0%
CCCCGCATAAAATGTTTAAT+TGG + Chr6:102789522-102789541 None:intergenic 35.0%
CTCATCCAAAAAATTCTCCT+TGG + Chr6:102791161-102791180 None:intergenic 35.0%
CTTTCATATGAGTTTACCGA+CGG + Chr6:102788545-102788564 None:intergenic 35.0%
GCATCCTTCTACAATTTCTT+TGG - Chr6:102789079-102789098 MsG0680035343.01.T01:intron 35.0%
GTAAAATTGAAACCAGCATG+TGG + Chr6:102790706-102790725 None:intergenic 35.0%
GTAACAAAATAGGTGATCAG+TGG + Chr6:102789998-102790017 None:intergenic 35.0%
TAACTTACAGAATCTGGCAA+TGG + Chr6:102790737-102790756 None:intergenic 35.0%
TAGCAACTTGATTGAACTTG+AGG - Chr6:102790582-102790601 MsG0680035343.01.T01:intron 35.0%
TCATATTGTAATCGATGCGA+AGG + Chr6:102789200-102789219 None:intergenic 35.0%
TGTGCATAACTTACAGAATC+TGG + Chr6:102790743-102790762 None:intergenic 35.0%
TTGATCTTCCACTCAGTAAA+TGG + Chr6:102790991-102791010 None:intergenic 35.0%
TTGCCAAAATGGTAGAGAAA+AGG - Chr6:102789628-102789647 MsG0680035343.01.T01:intron 35.0%
! ATCATTGTTGACTAGTCAAG+GGG - Chr6:102788407-102788426 MsG0680035343.01.T01:CDS 35.0%
! ATGAGGTTATTGATTGTAGC+CGG - Chr6:102791176-102791195 MsG0680035343.01.T01:CDS 35.0%
! CTCTCACAAATTTTGCTTGT+GGG - Chr6:102789668-102789687 MsG0680035343.01.T01:intron 35.0%
!! CCTCTCTTGTTATTATAACC+TGG + Chr6:102791079-102791098 None:intergenic 35.0%
!! TTTGGGTAGTGTAGTTCTAA+AGG - Chr6:102788623-102788642 MsG0680035343.01.T01:intron 35.0%
!!! AAATATTTTGGCGATCTGTC+TGG + Chr6:102788207-102788226 None:intergenic 35.0%
!!! CAAGGAGAATTTTTTGGATG+AGG - Chr6:102791159-102791178 MsG0680035343.01.T01:CDS 35.0%
AACATTCACTTCGTGCAAGA+TGG + Chr6:102790620-102790639 None:intergenic 40.0%
AACCACACAAAGACACAAGA+GGG - Chr6:102788495-102788514 MsG0680035343.01.T01:intron 40.0%
ACAAAATTGCAGGCTTCATG+AGG - Chr6:102790882-102790901 MsG0680035343.01.T01:intron 40.0%
AGTCAACACACCACAAAACA+GGG + Chr6:102788985-102789004 None:intergenic 40.0%
ATAGTCCACATAGCTCAACA+TGG - Chr6:102790292-102790311 MsG0680035343.01.T01:intron 40.0%
ATCAAGGATCTGGCAAAAGA+TGG - Chr6:102791006-102791025 MsG0680035343.01.T01:intron 40.0%
CAACACATCCATTTACTGAG+TGG - Chr6:102790980-102790999 MsG0680035343.01.T01:intron 40.0%
CGAAGTGAATGTTCACAACA+TGG - Chr6:102790627-102790646 MsG0680035343.01.T01:intron 40.0%
CTAGGATCTACGAAGAAATC+AGG - Chr6:102788711-102788730 MsG0680035343.01.T01:CDS 40.0%
CTGATTTCTTCGTAGATCCT+AGG + Chr6:102788713-102788732 None:intergenic 40.0%
GCTCAACTTGGCACAATATA+TGG - Chr6:102790349-102790368 MsG0680035343.01.T01:intron 40.0%
GGTTGAGACGACTGTTAATT+TGG + Chr6:102788479-102788498 None:intergenic 40.0%
TACCTCTTTGGATAGTAGCA+GGG - Chr6:102789757-102789776 MsG0680035343.01.T01:intron 40.0%
TGTTAAATATCGTCGTCCGT+CGG - Chr6:102788526-102788545 MsG0680035343.01.T01:intron 40.0%
TTATCCATCCGTTACAAGCA+AGG + Chr6:102789389-102789408 None:intergenic 40.0%
TTGATTGAACTTGAGGGTCT+TGG - Chr6:102790589-102790608 MsG0680035343.01.T01:intron 40.0%
TTTCTCCTTCTCACTTTGCT+TGG - Chr6:102789700-102789719 MsG0680035343.01.T01:intron 40.0%
! ACAAATTTTGCTTGTGGGAG+AGG - Chr6:102789673-102789692 MsG0680035343.01.T01:intron 40.0%
! CAAATTTTGCTTGTGGGAGA+GGG - Chr6:102789674-102789693 MsG0680035343.01.T01:intron 40.0%
! CTCAAGTTGTAGCACAATCT+GGG - Chr6:102788864-102788883 MsG0680035343.01.T01:CDS 40.0%
! CTCCACATGTATCTAAAGTC+TGG + Chr6:102789789-102789808 None:intergenic 40.0%
! GACTGTTAATTTGGTTCAGC+TGG + Chr6:102788470-102788489 None:intergenic 40.0%
! GCTCTCACAAATTTTGCTTG+TGG - Chr6:102789667-102789686 MsG0680035343.01.T01:intron 40.0%
! TGCTACAACTTGAGGTTTTG+AGG + Chr6:102788858-102788877 None:intergenic 40.0%
!!! AAGCAAGGTTCCCTTGTTTT+GGG + Chr6:102789374-102789393 None:intergenic 40.0%
!!! AGACACATTTTGGTGTTGGA+AGG + Chr6:102789549-102789568 None:intergenic 40.0%
AAGGATCTGGCAAAAGATGG+AGG - Chr6:102791009-102791028 MsG0680035343.01.T01:intron 45.0%
ACAGGGAACCTTGCTTGTAA+CGG + Chr6:102788968-102788987 None:intergenic 45.0%
ACCTCTTTGGATAGTAGCAG+GGG - Chr6:102789758-102789777 MsG0680035343.01.T01:intron 45.0%
AGGATCGGTGTGGATTTCTA+CGG - Chr6:102790902-102790921 MsG0680035343.01.T01:intron 45.0%
AGGATCTGGCAAAAGATGGA+GGG - Chr6:102791010-102791029 MsG0680035343.01.T01:intron 45.0%
AGGGCGCATGAGAAGAAAAT+AGG - Chr6:102789317-102789336 MsG0680035343.01.T01:intron 45.0%
ATACCTCTACTATCGAGGGA+TGG + Chr6:102790320-102790339 None:intergenic 45.0%
ATCCCTCTTGTGTCTTTGTG+TGG + Chr6:102788500-102788519 None:intergenic 45.0%
ATTGCAGGCTTCATGAGGAT+CGG - Chr6:102790887-102790906 MsG0680035343.01.T01:intron 45.0%
CAACCACACAAAGACACAAG+AGG - Chr6:102788494-102788513 MsG0680035343.01.T01:intron 45.0%
CAAGGGAACCTTGCTTGTAA+CGG - Chr6:102789378-102789397 MsG0680035343.01.T01:intron 45.0%
CAGTCAACACACCACAAAAC+AGG + Chr6:102788986-102789005 None:intergenic 45.0%
CCAGATTGTGCTACAACTTG+AGG + Chr6:102788866-102788885 None:intergenic 45.0%
CTACCTCTTTGGATAGTAGC+AGG - Chr6:102789756-102789775 MsG0680035343.01.T01:intron 45.0%
CTTCTCACTTTGCTTGGCAA+AGG - Chr6:102789706-102789725 MsG0680035343.01.T01:intron 45.0%
CTTTGCCAAGCAAAGTGAGA+AGG + Chr6:102789708-102789727 None:intergenic 45.0%
GAACATGACTGCTACCTCTT+TGG - Chr6:102789745-102789764 MsG0680035343.01.T01:intron 45.0%
GGGCGCATGAGAAGAAAATA+GGG - Chr6:102789318-102789337 MsG0680035343.01.T01:intron 45.0%
TCATGCGCCCTACTCAATTT+CGG + Chr6:102789308-102789327 None:intergenic 45.0%
TGAGTGGAAGATCAAGGATC+TGG - Chr6:102790996-102791015 MsG0680035343.01.T01:intron 45.0%
TGGATCCATGTTGAGCTATG+TGG + Chr6:102790300-102790319 None:intergenic 45.0%
TTGGCGATCTGTCTGGATTT+GGG + Chr6:102788200-102788219 None:intergenic 45.0%
TTTGGCGATCTGTCTGGATT+TGG + Chr6:102788201-102788220 None:intergenic 45.0%
! AAGCAAGGTTCCCTGTTTTG+TGG - Chr6:102788972-102788991 MsG0680035343.01.T01:intron 45.0%
! AGGTTATTGATTGTAGCCGG+TGG - Chr6:102791179-102791198 MsG0680035343.01.T01:CDS 45.0%
! CCTCAAGTTGTAGCACAATC+TGG - Chr6:102788863-102788882 MsG0680035343.01.T01:CDS 45.0%
! TTATTGATTGTAGCCGGTGG+CGG - Chr6:102791182-102791201 MsG0680035343.01.T01:CDS 45.0%
! TTCTAAAGGACCAGTCGAGT+AGG - Chr6:102788637-102788656 MsG0680035343.01.T01:intron 45.0%
!! CAAGCAAGGTTCCCTTGTTT+TGG + Chr6:102789375-102789394 None:intergenic 45.0%
!! CTTTGCTTGGCAAAGGCATT+TGG - Chr6:102789713-102789732 MsG0680035343.01.T01:intron 45.0%
!! GAGTTTCTAGTGCGGAAGTA+TGG - Chr6:102790556-102790575 MsG0680035343.01.T01:intron 45.0%
!! TGGTATCGACATTGAGACAC+CGG - Chr6:102790840-102790859 MsG0680035343.01.T01:intron 45.0%
!!! AAGGTTCCCTTGTTTTGGGA+CGG + Chr6:102789370-102789389 None:intergenic 45.0%
AACGGCATGGTAGATGGTCT+CGG + Chr6:102788950-102788969 None:intergenic 50.0%
ACTCCATCCGTCCCAAAACA+AGG - Chr6:102789360-102789379 MsG0680035343.01.T01:intron 50.0%
CTACCATGCCGTTACAAGCA+AGG - Chr6:102788957-102788976 MsG0680035343.01.T01:intron 50.0%
CTCCATCCGTCCCAAAACAA+GGG - Chr6:102789361-102789380 MsG0680035343.01.T01:intron 50.0%
CTGGCAAAAGATGGAGGGAT+TGG - Chr6:102791015-102791034 MsG0680035343.01.T01:intron 50.0%
GAACCTTGCTTGTAACGGCA+TGG + Chr6:102788963-102788982 None:intergenic 50.0%
GATCCATCCCTCGATAGTAG+AGG - Chr6:102790314-102790333 MsG0680035343.01.T01:intron 50.0%
GCTTGTAACGGCATGGTAGA+TGG + Chr6:102788956-102788975 None:intergenic 50.0%
TCTTTGGATAGTAGCAGGGG+CGG - Chr6:102789761-102789780 MsG0680035343.01.T01:intron 50.0%
TGATGTCAACGTTCCCTCGT+TGG + Chr6:102788315-102788334 None:intergenic 50.0%
TGGCGATCTGTCTGGATTTG+GGG + Chr6:102788199-102788218 None:intergenic 50.0%
! GGAACCTTGCTTGTAACGGA+TGG - Chr6:102789382-102789401 MsG0680035343.01.T01:intron 50.0%
!!! TTCCCTTGTTTTGGGACGGA+TGG + Chr6:102789366-102789385 None:intergenic 50.0%
AGGCTTCATGAGGATCGGTG+TGG - Chr6:102790892-102790911 MsG0680035343.01.T01:intron 55.0%
AGTCGAGTAGGACGCTTCCT+TGG - Chr6:102788649-102788668 MsG0680035343.01.T01:intron 55.0%
GCCCCTGCTACTATCCAAAG+AGG + Chr6:102789762-102789781 None:intergenic 55.0%
!! AAGGAAGCGTCCTACTCGAC+TGG + Chr6:102788650-102788669 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 102788188 102791210 102788188 ID=MsG0680035343.01;Name=MsG0680035343.01
Chr6 mRNA 102788188 102791210 102788188 ID=MsG0680035343.01.T01;Parent=MsG0680035343.01;Name=MsG0680035343.01.T01;_AED=0.30;_eAED=0.47;_QI=0|0|0|0.66|1|1|3|0|204
Chr6 exon 102791154 102791210 102791154 ID=MsG0680035343.01.T01:exon:21028;Parent=MsG0680035343.01.T01
Chr6 exon 102788650 102788890 102788650 ID=MsG0680035343.01.T01:exon:21027;Parent=MsG0680035343.01.T01
Chr6 exon 102788188 102788504 102788188 ID=MsG0680035343.01.T01:exon:21026;Parent=MsG0680035343.01.T01
Chr6 CDS 102791154 102791210 102791154 ID=MsG0680035343.01.T01:cds;Parent=MsG0680035343.01.T01
Chr6 CDS 102788650 102788890 102788650 ID=MsG0680035343.01.T01:cds;Parent=MsG0680035343.01.T01
Chr6 CDS 102788188 102788504 102788188 ID=MsG0680035343.01.T01:cds;Parent=MsG0680035343.01.T01
Gene Sequence

>MsG0680035343.01.T01

ATGAGCAACCCCAAATCCAGACAGATCGCCAAAATATTTTTTGTGCGAATTTGCAAGATTCAACTAATTGAGTTTATTTATTTTGCAAAATACTACAATTTTGAAGAGTTTCTAGTGCGGAAGTATGGATCTAGCAACTTGATTGAACTTGAGGGTCTTGGCTGTACCATCTTGCACGAAGTGAATGTTCACAACATGGCTCAAGACCAGCATCTCAAGAATAATAAATTTGATCGAATAATCTTTAATTTTCCACATGCTGGTTTCAATTTTACGAATTTCACCATTGCCAGATTCTGCTTCATGAGGATCGGTGTGGATTTCTACGGAATTATGCTAAAAACATGCTTTCTTTTGGAGGAGAAATTCATATTTCTCACAAGACAACACATCCATTTACTGAGTGGAAGATCAAGGATCTGGCAAAAGATGGAGGGATTGGAGTTTATTGAAGAAGTGGAGTTTCAAGGATCATTTTATCCAGGTTATAATAACAAGAGAGGATCTGGTTCTAAATGTTATCATAGTTTCCCTATTGGAAAGAGTAGTACTTTCAAATTTGCCAAGGAGAATTTTTTGGATGAGGTTATTGATTGTAGCCGGTGGCGGTTGTAA
Protein sequence

>MsG0680035343.01.T01

MSNPKSRQIAKIFFVRICKIQLIEFIYFAKYYNFEEFLVRKYGSSNLIELEGLGCTILHEVNVHNMAQDQHLKNNKFDRIIFNFPHAGFNFTNFTIARFCFMRIGVDFYGIMLKTCFLLEEKFIFLTRQHIHLLSGRSRIWQKMEGLEFIEEVEFQGSFYPGYNNKRGSGSKCYHSFPIGKSSTFKFAKENFLDEVIDCSRWRL*