Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035596.01.T01 | MCH82813.1 | 41.622 | 370 | 195 | 8 | 52 | 411 | 32 | 390 | 2.32E-80 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035596.01.T01 | P15628 | 33.41 | 437 | 270 | 9 | 1 | 432 | 1 | 421 | 2.72E-61 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035596.01.T01 | A0A392M6R8 | 41.622 | 370 | 195 | 8 | 52 | 411 | 32 | 390 | 1.11e-80 | 265 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380012312.01 | MsG0680035596.01 | 0.849101 | 4.012728e-60 | 7.525311e-57 |
| MsG0380012564.01 | MsG0680035596.01 | 0.803209 | 3.887526e-49 | 1.942114e-46 |
| MsG0380012565.01 | MsG0680035596.01 | 0.814153 | 1.781073e-51 | 1.185864e-48 |
| MsG0680034013.01 | MsG0680035596.01 | 0.808063 | 3.722902e-50 | 2.107736e-47 |
| MsG0680035343.01 | MsG0680035596.01 | 0.824664 | 7.140450e-54 | 6.366937e-51 |
| MsG0680035439.01 | MsG0680035596.01 | 0.881248 | 2.811059e-70 | 1.634705e-66 |
| MsG0680035595.01 | MsG0680035596.01 | 0.823287 | 1.501926e-53 | 1.287684e-50 |
| MsG0680035596.01 | MsG0780036978.01 | 0.800338 | 1.510442e-48 | 7.015342e-46 |
| MsG0680035596.01 | MsG0880042622.01 | 0.817773 | 2.770953e-52 | 2.036660e-49 |
| MsG0480018677.01 | MsG0680035596.01 | 0.820945 | 5.244629e-53 | 4.208974e-50 |
| MsG0580025467.01 | MsG0680035596.01 | 0.805732 | 1.158086e-49 | 6.173873e-47 |
| MsG0480018277.01 | MsG0680035596.01 | 0.808030 | 3.783968e-50 | 2.140405e-47 |
| MsG0580027955.01 | MsG0680035596.01 | 0.827477 | 1.530706e-54 | 1.479497e-51 |
| MsG0580027980.01 | MsG0680035596.01 | 0.805350 | 1.392548e-49 | 7.350697e-47 |
| MsG0280006588.01 | MsG0680035596.01 | 0.803121 | 4.055634e-49 | 2.021438e-46 |
| MsG0280006589.01 | MsG0680035596.01 | 0.803218 | 3.871449e-49 | 1.934515e-46 |
| MsG0280006873.01 | MsG0680035596.01 | 0.812533 | 4.042416e-51 | 2.576762e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035596.01.T01 | MTR_7g015420 | 33.136 | 338 | 177 | 7 | 81 | 414 | 846 | 1138 | 1.41e-40 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCCAACACTTTCTGAATT+TGG | 0.097051 | 6:+108915521 | None:intergenic |
| CACTCCTGTTGAACTTCTTC+TGG | 0.193028 | 6:+108915287 | None:intergenic |
| TTCTTTCTGGAGATTTATTA+TGG | 0.212776 | 6:+108915955 | None:intergenic |
| AGCAATGGTCATTTCTTTAT+AGG | 0.243390 | 6:+108916033 | None:intergenic |
| ACCCCATGTGTGGTATTAAC+TGG | 0.246676 | 6:+108915842 | None:intergenic |
| ATTGCAAGCCTTCATATTAA+TGG | 0.256053 | 6:-108916118 | MsG0680035596.01.T01:CDS |
| ATGACCATTGCTAAAGAAAT+TGG | 0.265484 | 6:-108916022 | MsG0680035596.01.T01:CDS |
| AGCTTCAACATTTATGATCT+TGG | 0.269224 | 6:+108916384 | None:intergenic |
| TTCTACCATTATTAATTATA+AGG | 0.271230 | 6:-108915438 | MsG0680035596.01.T01:CDS |
| TATGATAACCTTATCAGATA+TGG | 0.298938 | 6:-108915461 | MsG0680035596.01.T01:CDS |
| CCAAGAACAGTCATCAAAAT+AGG | 0.302495 | 6:-108915569 | MsG0680035596.01.T01:CDS |
| ACAAAGGGCATATCTGTAAA+TGG | 0.307324 | 6:-108915244 | MsG0680035596.01.T01:CDS |
| ATTAATTCCTTGGATATTCC+TGG | 0.311149 | 6:+108915803 | None:intergenic |
| TGAAAGGCATCTACAACAAC+TGG | 0.348810 | 6:-108916144 | MsG0680035596.01.T01:CDS |
| AAATTCTTTAATTAATTCCT+TGG | 0.355535 | 6:+108915793 | None:intergenic |
| ACTGTATCACCAATCTCTTT+TGG | 0.356945 | 6:+108915695 | None:intergenic |
| ATGACATACACCTTCTTTGC+TGG | 0.368450 | 6:+108916181 | None:intergenic |
| TCCTCTTGCACTGTGATTGT+CGG | 0.370982 | 6:+108915182 | None:intergenic |
| TTCTTTATAGGAGGCCTTGT+AGG | 0.377645 | 6:+108916045 | None:intergenic |
| GTTGGTTCTTCTGTTGCTGT+TGG | 0.395797 | 6:+108916361 | None:intergenic |
| TGCTAATTCTTCTTTGAAGT+TGG | 0.403785 | 6:+108915880 | None:intergenic |
| ACTCCTGTTGAACTTCTTCT+GGG | 0.405825 | 6:+108915288 | None:intergenic |
| AAGGACCTTATAATTAATAA+TGG | 0.408207 | 6:+108915433 | None:intergenic |
| ATGGATAGGTTTGTTCGAAC+TGG | 0.413587 | 6:+108915627 | None:intergenic |
| GGTCCCAGAAGAAGTTCAAC+AGG | 0.418738 | 6:-108915291 | MsG0680035596.01.T01:CDS |
| TTTAATGATTTCCTTGCTAA+AGG | 0.422353 | 6:-108915665 | MsG0680035596.01.T01:CDS |
| GTAAAAGCTAATACGGTTCC+AGG | 0.428477 | 6:-108915821 | MsG0680035596.01.T01:CDS |
| AAGGTGTATGTCATCTTTGA+TGG | 0.451459 | 6:-108916172 | MsG0680035596.01.T01:CDS |
| TTGTTGTAGATGCCTTTCAT+TGG | 0.452259 | 6:+108916148 | None:intergenic |
| ATTTGAAAATGCTCTTAGTC+AGG | 0.453015 | 6:-108915312 | MsG0680035596.01.T01:CDS |
| TGGTAGAACCATATCTGATA+AGG | 0.482750 | 6:+108915453 | None:intergenic |
| GCTGATCTTCCAAAAGAGAT+TGG | 0.485768 | 6:-108915704 | MsG0680035596.01.T01:CDS |
| AATCACAGTGCAAGAGGATA+AGG | 0.485992 | 6:-108915177 | MsG0680035596.01.T01:CDS |
| AATGGTCATTTCTTTATAGG+AGG | 0.503367 | 6:+108916036 | None:intergenic |
| ACATGGGGTAAAAGCTAATA+CGG | 0.510324 | 6:-108915828 | MsG0680035596.01.T01:CDS |
| GTGCAAGAGGATAAGGCAAA+AGG | 0.511382 | 6:-108915170 | MsG0680035596.01.T01:CDS |
| ATCTTTGATGGTCCAATGAA+AGG | 0.512982 | 6:-108916160 | MsG0680035596.01.T01:CDS |
| CCAACACTTTCTGAATTTGG+AGG | 0.514859 | 6:+108915524 | None:intergenic |
| CCCCATGTGTGGTATTAACT+GGG | 0.518291 | 6:+108915843 | None:intergenic |
| AAAACCCTTGATGATTTCAT+GGG | 0.539725 | 6:-108915920 | MsG0680035596.01.T01:CDS |
| CATAATAGAGCGTTTGCTTG+AGG | 0.540516 | 6:+108915351 | None:intergenic |
| AGAAGCAAAAGAAGCCTACA+AGG | 0.540942 | 6:-108916059 | MsG0680035596.01.T01:CDS |
| AAATTTCTCTTCCTTTAGCA+AGG | 0.541093 | 6:+108915654 | None:intergenic |
| AACACTTCTCGAAATACAAA+GGG | 0.542133 | 6:-108915259 | MsG0680035596.01.T01:CDS |
| ACTTTCCCATGAAATCATCA+AGG | 0.543500 | 6:+108915915 | None:intergenic |
| TACCCAGTTAATACCACACA+TGG | 0.547035 | 6:-108915845 | MsG0680035596.01.T01:CDS |
| CTTTCCCATGAAATCATCAA+GGG | 0.547271 | 6:+108915916 | None:intergenic |
| TTGATGATTTCATGGGAAAG+TGG | 0.548389 | 6:-108915913 | MsG0680035596.01.T01:CDS |
| CGAGCTACAACCAGCAAAGA+AGG | 0.548836 | 6:-108916191 | MsG0680035596.01.T01:CDS |
| AAGACTGTGTATCTTGAAGA+AGG | 0.551890 | 6:-108915752 | MsG0680035596.01.T01:CDS |
| CCTCCAAATTCAGAAAGTGT+TGG | 0.556782 | 6:-108915524 | MsG0680035596.01.T01:CDS |
| ACCGACAATCACAGTGCAAG+AGG | 0.557769 | 6:-108915183 | MsG0680035596.01.T01:CDS |
| GCTCGACAACATCGCTTGGT+TGG | 0.568515 | 6:+108916209 | None:intergenic |
| TTGGCCAATTTCTTTAGCAA+TGG | 0.570129 | 6:+108916018 | None:intergenic |
| GGTCTGTGATTCAAAGAGGA+AGG | 0.571186 | 6:-108915387 | MsG0680035596.01.T01:CDS |
| GACAGGTCTCTGTAGTGTAA+AGG | 0.572739 | 6:+108915414 | None:intergenic |
| CAAATTCAGAAAGTGTTGGA+TGG | 0.573012 | 6:-108915520 | MsG0680035596.01.T01:CDS |
| TGAATCACAGACCATGAGAC+AGG | 0.573884 | 6:+108915397 | None:intergenic |
| TGTAGCTCGACAACATCGCT+TGG | 0.577507 | 6:+108916205 | None:intergenic |
| ATTTCATGGGAAAGTGGAGA+TGG | 0.588203 | 6:-108915907 | MsG0680035596.01.T01:CDS |
| CACTACAGAGACCTGTCTCA+TGG | 0.589163 | 6:-108915408 | MsG0680035596.01.T01:CDS |
| CAACACTTCTCGAAATACAA+AGG | 0.592269 | 6:-108915260 | MsG0680035596.01.T01:CDS |
| AAAACAACTCTCTTCAGAGA+GGG | 0.592303 | 6:-108916437 | MsG0680035596.01.T01:CDS |
| AACAACTCTCTTCAGAGAGG+GGG | 0.593737 | 6:-108916435 | MsG0680035596.01.T01:CDS |
| AGTTCGAACAAACCTATCCA+TGG | 0.595175 | 6:-108915625 | MsG0680035596.01.T01:CDS |
| TAAAACAACTCTCTTCAGAG+AGG | 0.597194 | 6:-108916438 | MsG0680035596.01.T01:CDS |
| TTCAAAGAGGAAGGTTTCAG+AGG | 0.605174 | 6:-108915378 | MsG0680035596.01.T01:CDS |
| ACACAAAGCTTATTCAACAA+TGG | 0.605601 | 6:-108916083 | MsG0680035596.01.T01:CDS |
| TACGGTTCCAGGAATATCCA+AGG | 0.613494 | 6:-108915810 | MsG0680035596.01.T01:CDS |
| ACCCAGTTAATACCACACAT+GGG | 0.621693 | 6:-108915844 | MsG0680035596.01.T01:CDS |
| TCATGGTCTGTGATTCAAAG+AGG | 0.633070 | 6:-108915391 | MsG0680035596.01.T01:CDS |
| GTGTATCTTGAAGAAGGAGA+AGG | 0.635111 | 6:-108915746 | MsG0680035596.01.T01:CDS |
| CCCAGTTAATACCACACATG+GGG | 0.643131 | 6:-108915843 | MsG0680035596.01.T01:CDS |
| ACAACTCTCTTCAGAGAGGG+GGG | 0.655436 | 6:-108916434 | MsG0680035596.01.T01:CDS |
| AAACAACTCTCTTCAGAGAG+GGG | 0.673957 | 6:-108916436 | MsG0680035596.01.T01:CDS |
| GAAAGGCATCTACAACAACT+GGG | 0.678456 | 6:-108916143 | MsG0680035596.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAAGAAAATAATTTTA+TGG | - | Chr6:108916074-108916093 | MsG0680035596.01.T01:CDS | 10.0% |
| !! | AAATTCTTTAATTAATTCCT+TGG | + | Chr6:108915884-108915903 | None:intergenic | 15.0% |
| !! | TTCTACCATTATTAATTATA+AGG | - | Chr6:108916236-108916255 | MsG0680035596.01.T01:CDS | 15.0% |
| !!! | ATTAAAGAATTTTATGACTA+TGG | - | Chr6:108915892-108915911 | MsG0680035596.01.T01:CDS | 15.0% |
| !! | AAGGACCTTATAATTAATAA+TGG | + | Chr6:108916244-108916263 | None:intergenic | 20.0% |
| !!! | TTATTTTCTTCAAAAAACCA+TGG | + | Chr6:108916069-108916088 | None:intergenic | 20.0% |
| ! | AAGAAGATACAAAAAAGTCA+TGG | - | Chr6:108915395-108915414 | MsG0680035596.01.T01:CDS | 25.0% |
| ! | AGAAGATACAAAAAAGTCAT+GGG | - | Chr6:108915396-108915415 | MsG0680035596.01.T01:CDS | 25.0% |
| ! | GAAGAAGAAGAATCAAAAAA+TGG | - | Chr6:108915436-108915455 | MsG0680035596.01.T01:CDS | 25.0% |
| ! | TATGATAACCTTATCAGATA+TGG | - | Chr6:108916213-108916232 | MsG0680035596.01.T01:CDS | 25.0% |
| ! | TTTAATGATTTCCTTGCTAA+AGG | - | Chr6:108916009-108916028 | MsG0680035596.01.T01:CDS | 25.0% |
| !! | CATTTTTGCCATTAATATGA+AGG | + | Chr6:108915567-108915586 | None:intergenic | 25.0% |
| !! | TGTTCATTCAAAGTTTTTGT+TGG | + | Chr6:108915334-108915353 | None:intergenic | 25.0% |
| !! | TTCTTTCTGGAGATTTATTA+TGG | + | Chr6:108915722-108915741 | None:intergenic | 25.0% |
| !!! | TTGGCTTATTTTTTTCTTTC+TGG | + | Chr6:108915735-108915754 | None:intergenic | 25.0% |
| AAATTTCTCTTCCTTTAGCA+AGG | + | Chr6:108916023-108916042 | None:intergenic | 30.0% | |
| AACACTTCTCGAAATACAAA+GGG | - | Chr6:108916415-108916434 | MsG0680035596.01.T01:CDS | 30.0% | |
| AATGGTCATTTCTTTATAGG+AGG | + | Chr6:108915641-108915660 | None:intergenic | 30.0% | |
| ACACAAAGCTTATTCAACAA+TGG | - | Chr6:108915591-108915610 | MsG0680035596.01.T01:CDS | 30.0% | |
| AGCAATGGTCATTTCTTTAT+AGG | + | Chr6:108915644-108915663 | None:intergenic | 30.0% | |
| AGCTTCAACATTTATGATCT+TGG | + | Chr6:108915293-108915312 | None:intergenic | 30.0% | |
| ATGACCATTGCTAAAGAAAT+TGG | - | Chr6:108915652-108915671 | MsG0680035596.01.T01:CDS | 30.0% | |
| ATTAATTCCTTGGATATTCC+TGG | + | Chr6:108915874-108915893 | None:intergenic | 30.0% | |
| ATTGCAAGCCTTCATATTAA+TGG | - | Chr6:108915556-108915575 | MsG0680035596.01.T01:CDS | 30.0% | |
| ATTTGAAAATGCTCTTAGTC+AGG | - | Chr6:108916362-108916381 | MsG0680035596.01.T01:CDS | 30.0% | |
| TCAAAGAAAAAGATCTCAGT+GGG | - | Chr6:108915694-108915713 | MsG0680035596.01.T01:CDS | 30.0% | |
| TTCTTCAAAAAACCATGGAT+AGG | + | Chr6:108916064-108916083 | None:intergenic | 30.0% | |
| ! | AAAAACCCTTGATGATTTCA+TGG | - | Chr6:108915753-108915772 | MsG0680035596.01.T01:CDS | 30.0% |
| ! | AAAACCCTTGATGATTTCAT+GGG | - | Chr6:108915754-108915773 | MsG0680035596.01.T01:CDS | 30.0% |
| ! | ATGAAATCATCAAGGGTTTT+TGG | + | Chr6:108915754-108915773 | None:intergenic | 30.0% |
| !! | TGCTAATTCTTCTTTGAAGT+TGG | + | Chr6:108915797-108915816 | None:intergenic | 30.0% |
| !! | TTCTTTGACTCCATTTTTGA+TGG | + | Chr6:108915682-108915701 | None:intergenic | 30.0% |
| !!! | AAGAGAGTTGTTTTAGCTTT+TGG | + | Chr6:108915231-108915250 | None:intergenic | 30.0% |
| !!! | GACTTTTTTGTATCTTCTTC+TGG | + | Chr6:108915394-108915413 | None:intergenic | 30.0% |
| AAAACAACTCTCTTCAGAGA+GGG | - | Chr6:108915237-108915256 | MsG0680035596.01.T01:CDS | 35.0% | |
| AAGACTGTGTATCTTGAAGA+AGG | - | Chr6:108915922-108915941 | MsG0680035596.01.T01:CDS | 35.0% | |
| AAGGTGTATGTCATCTTTGA+TGG | - | Chr6:108915502-108915521 | MsG0680035596.01.T01:CDS | 35.0% | |
| AATTGGCCAACCATCAAAAA+TGG | - | Chr6:108915669-108915688 | MsG0680035596.01.T01:CDS | 35.0% | |
| ACATGGGGTAAAAGCTAATA+CGG | - | Chr6:108915846-108915865 | MsG0680035596.01.T01:CDS | 35.0% | |
| ACTTTCCCATGAAATCATCA+AGG | + | Chr6:108915762-108915781 | None:intergenic | 35.0% | |
| CAACACTTCTCGAAATACAA+AGG | - | Chr6:108916414-108916433 | MsG0680035596.01.T01:CDS | 35.0% | |
| CATCCAACACTTTCTGAATT+TGG | + | Chr6:108916156-108916175 | None:intergenic | 35.0% | |
| CCAAGAACAGTCATCAAAAT+AGG | - | Chr6:108916105-108916124 | MsG0680035596.01.T01:CDS | 35.0% | |
| CTTTCCCATGAAATCATCAA+GGG | + | Chr6:108915761-108915780 | None:intergenic | 35.0% | |
| GTCAAAGAAAAAGATCTCAG+TGG | - | Chr6:108915693-108915712 | MsG0680035596.01.T01:CDS | 35.0% | |
| TAAAACAACTCTCTTCAGAG+AGG | - | Chr6:108915236-108915255 | MsG0680035596.01.T01:CDS | 35.0% | |
| TGGTAGAACCATATCTGATA+AGG | + | Chr6:108916224-108916243 | None:intergenic | 35.0% | |
| TTGGCCAATTTCTTTAGCAA+TGG | + | Chr6:108915659-108915678 | None:intergenic | 35.0% | |
| TTGTTGTAGATGCCTTTCAT+TGG | + | Chr6:108915529-108915548 | None:intergenic | 35.0% | |
| ! | ACAAAGGGCATATCTGTAAA+TGG | - | Chr6:108916430-108916449 | MsG0680035596.01.T01:CDS | 35.0% |
| ! | ACTGTATCACCAATCTCTTT+TGG | + | Chr6:108915982-108916001 | None:intergenic | 35.0% |
| ! | ATCTTTGATGGTCCAATGAA+AGG | - | Chr6:108915514-108915533 | MsG0680035596.01.T01:CDS | 35.0% |
| ! | GTGTGCAAAAAAGAAAGTGT+CGG | - | Chr6:108916452-108916471 | MsG0680035596.01.T01:CDS | 35.0% |
| ! | TTGATGATTTCATGGGAAAG+TGG | - | Chr6:108915761-108915780 | MsG0680035596.01.T01:CDS | 35.0% |
| ! | TTTTCATCAACATCTTCAGC+AGG | - | Chr6:108915361-108915380 | MsG0680035596.01.T01:CDS | 35.0% |
| !! | CAAATTCAGAAAGTGTTGGA+TGG | - | Chr6:108916154-108916173 | MsG0680035596.01.T01:CDS | 35.0% |
| !! | TTGACTCCATTTTTGATGGT+TGG | + | Chr6:108915678-108915697 | None:intergenic | 35.0% |
| !!! | CCTATTTTGATGACTGTTCT+TGG | + | Chr6:108916108-108916127 | None:intergenic | 35.0% |
| AAACAACTCTCTTCAGAGAG+GGG | - | Chr6:108915238-108915257 | MsG0680035596.01.T01:CDS | 40.0% | |
| AATCACAGTGCAAGAGGATA+AGG | - | Chr6:108916497-108916516 | MsG0680035596.01.T01:CDS | 40.0% | |
| ACCCAGTTAATACCACACAT+GGG | - | Chr6:108915830-108915849 | MsG0680035596.01.T01:CDS | 40.0% | |
| ACTCCTGTTGAACTTCTTCT+GGG | + | Chr6:108916389-108916408 | None:intergenic | 40.0% | |
| AGAAGCAAAAGAAGCCTACA+AGG | - | Chr6:108915615-108915634 | MsG0680035596.01.T01:CDS | 40.0% | |
| AGTTCGAACAAACCTATCCA+TGG | - | Chr6:108916049-108916068 | MsG0680035596.01.T01:CDS | 40.0% | |
| ATGACATACACCTTCTTTGC+TGG | + | Chr6:108915496-108915515 | None:intergenic | 40.0% | |
| ATTTCATGGGAAAGTGGAGA+TGG | - | Chr6:108915767-108915786 | MsG0680035596.01.T01:CDS | 40.0% | |
| CCAACACTTTCTGAATTTGG+AGG | + | Chr6:108916153-108916172 | None:intergenic | 40.0% | |
| GCTGATCTTCCAAAAGAGAT+TGG | - | Chr6:108915970-108915989 | MsG0680035596.01.T01:CDS | 40.0% | |
| GTAAAAGCTAATACGGTTCC+AGG | - | Chr6:108915853-108915872 | MsG0680035596.01.T01:CDS | 40.0% | |
| GTGTATCTTGAAGAAGGAGA+AGG | - | Chr6:108915928-108915947 | MsG0680035596.01.T01:CDS | 40.0% | |
| TACCCAGTTAATACCACACA+TGG | - | Chr6:108915829-108915848 | MsG0680035596.01.T01:CDS | 40.0% | |
| TCATGGTCTGTGATTCAAAG+AGG | - | Chr6:108916283-108916302 | MsG0680035596.01.T01:CDS | 40.0% | |
| TTCAAAGAGGAAGGTTTCAG+AGG | - | Chr6:108916296-108916315 | MsG0680035596.01.T01:CDS | 40.0% | |
| ! | ATGGATAGGTTTGTTCGAAC+TGG | + | Chr6:108916050-108916069 | None:intergenic | 40.0% |
| ! | CATAATAGAGCGTTTGCTTG+AGG | + | Chr6:108916326-108916345 | None:intergenic | 40.0% |
| ! | CCTCCAAATTCAGAAAGTGT+TGG | - | Chr6:108916150-108916169 | MsG0680035596.01.T01:CDS | 40.0% |
| ! | TTCTTTATAGGAGGCCTTGT+AGG | + | Chr6:108915632-108915651 | None:intergenic | 40.0% |
| !! | GAAAGGCATCTACAACAACT+GGG | - | Chr6:108915531-108915550 | MsG0680035596.01.T01:CDS | 40.0% |
| !! | TGAAAGGCATCTACAACAAC+TGG | - | Chr6:108915530-108915549 | MsG0680035596.01.T01:CDS | 40.0% |
| !!! | ATTAGCTTTTACCCCATGTG+TGG | + | Chr6:108915845-108915864 | None:intergenic | 40.0% |
| AACAACTCTCTTCAGAGAGG+GGG | - | Chr6:108915239-108915258 | MsG0680035596.01.T01:CDS | 45.0% | |
| ACCCCATGTGTGGTATTAAC+TGG | + | Chr6:108915835-108915854 | None:intergenic | 45.0% | |
| CACTCCTGTTGAACTTCTTC+TGG | + | Chr6:108916390-108916409 | None:intergenic | 45.0% | |
| CCCAGTTAATACCACACATG+GGG | - | Chr6:108915831-108915850 | MsG0680035596.01.T01:CDS | 45.0% | |
| CCCCATGTGTGGTATTAACT+GGG | + | Chr6:108915834-108915853 | None:intergenic | 45.0% | |
| GACAGGTCTCTGTAGTGTAA+AGG | + | Chr6:108916263-108916282 | None:intergenic | 45.0% | |
| GGTCTGTGATTCAAAGAGGA+AGG | - | Chr6:108916287-108916306 | MsG0680035596.01.T01:CDS | 45.0% | |
| GTGCAAGAGGATAAGGCAAA+AGG | - | Chr6:108916504-108916523 | MsG0680035596.01.T01:CDS | 45.0% | |
| TACGGTTCCAGGAATATCCA+AGG | - | Chr6:108915864-108915883 | MsG0680035596.01.T01:CDS | 45.0% | |
| TCCTCTTGCACTGTGATTGT+CGG | + | Chr6:108916495-108916514 | None:intergenic | 45.0% | |
| TGAATCACAGACCATGAGAC+AGG | + | Chr6:108916280-108916299 | None:intergenic | 45.0% | |
| ! | GTTGGTTCTTCTGTTGCTGT+TGG | + | Chr6:108915316-108915335 | None:intergenic | 45.0% |
| ACAACTCTCTTCAGAGAGGG+GGG | - | Chr6:108915240-108915259 | MsG0680035596.01.T01:CDS | 50.0% | |
| ACCGACAATCACAGTGCAAG+AGG | - | Chr6:108916491-108916510 | MsG0680035596.01.T01:CDS | 50.0% | |
| CACTACAGAGACCTGTCTCA+TGG | - | Chr6:108916266-108916285 | MsG0680035596.01.T01:CDS | 50.0% | |
| CGAGCTACAACCAGCAAAGA+AGG | - | Chr6:108915483-108915502 | MsG0680035596.01.T01:CDS | 50.0% | |
| GGTCCCAGAAGAAGTTCAAC+AGG | - | Chr6:108916383-108916402 | MsG0680035596.01.T01:CDS | 50.0% | |
| TGTAGCTCGACAACATCGCT+TGG | + | Chr6:108915472-108915491 | None:intergenic | 50.0% | |
| GCTCGACAACATCGCTTGGT+TGG | + | Chr6:108915468-108915487 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 108915160 | 108916536 | 108915160 | ID=MsG0680035596.01;Name=MsG0680035596.01 |
| Chr6 | mRNA | 108915160 | 108916536 | 108915160 | ID=MsG0680035596.01.T01;Parent=MsG0680035596.01;Name=MsG0680035596.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|458 |
| Chr6 | exon | 108915160 | 108916536 | 108915160 | ID=MsG0680035596.01.T01:exon:8426;Parent=MsG0680035596.01.T01 |
| Chr6 | CDS | 108915160 | 108916536 | 108915160 | ID=MsG0680035596.01.T01:cds;Parent=MsG0680035596.01.T01 |
| Gene Sequence |
| Protein sequence |
