AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780035941.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035941.01.T01 MTR_7g006260 98.141 269 5 0 28 296 119 387 0.0 541
MsG0780035941.01.T01 MTR_7g006260 85.161 310 5 1 28 296 119 428 0.0 522
MsG0780035941.01.T01 MTR_7g006100 75.648 193 47 0 24 216 64 256 3.10e-99 309
MsG0780035941.01.T01 MTR_7g005745 86.567 134 6 1 80 213 68 189 1.67e-74 228
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035941.01.T01 AT2G43180 64.706 306 74 4 24 298 128 430 8.45e-132 383
MsG0780035941.01.T01 AT2G43180 64.474 304 74 4 24 296 128 428 6.74e-131 380
MsG0780035941.01.T01 AT2G43180 64.686 303 74 4 24 296 128 427 2.64e-130 379
MsG0780035941.01.T01 AT2G43180 64.474 304 74 4 24 296 128 428 4.81e-130 379
MsG0780035941.01.T01 AT1G21440 39.732 224 124 6 42 259 114 332 2.11e-43 152
MsG0780035941.01.T01 AT1G21440 39.732 224 124 6 42 259 114 332 2.11e-43 152
MsG0780035941.01.T01 AT1G77060 36.555 238 141 6 28 259 101 334 1.91e-42 149

Find 66 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGATCCACTCTCATTTC+TGG 0.228975 7:+372426 None:intergenic
GCCTATCCCCTTTCTTTGAT+TGG 0.231701 7:-372068 MsG0780035941.01.T01:CDS
CGGGACCAGATTCCAGAAAA+AGG 0.258570 7:+370406 None:intergenic
TCAAAAGTTGGCATGCTTCC+TGG 0.263871 7:+371182 None:intergenic
TCTGTGGATATTCCTGTTAT+TGG 0.335613 7:-373960 MsG0780035941.01.T01:CDS
TCCTTAATTTCTTCAAAAGT+TGG 0.367129 7:+371170 None:intergenic
GTTATTGGTGATGCTGATAA+TGG 0.368766 7:-373945 MsG0780035941.01.T01:CDS
GAATGTTAAGAGAACTGTTA+AGG 0.376366 7:-373907 MsG0780035941.01.T01:CDS
GATGCGCTGACTGCTATTAA+AGG 0.377255 7:-371221 MsG0780035941.01.T01:CDS
TGGAGAGTGTGATCACTTAC+AGG 0.379186 7:+370325 None:intergenic
TGGTATCATTCTTGAGGATC+AGG 0.384723 7:-373862 MsG0780035941.01.T01:intron
AAAAGCTTCCATCTCTTGTC+TGG 0.386562 7:+372285 None:intergenic
AATGTTAAGAGAACTGTTAA+GGG 0.392156 7:-373906 MsG0780035941.01.T01:CDS
TTCTCTTAAATTTGTTCAGT+TGG 0.403051 7:+370305 None:intergenic
TGTGTGTGACCACACGCTTT+TGG 0.411006 7:+372508 None:intergenic
TAGGAGAATTCAGCATGTTT+CGG 0.438463 7:-374404 MsG0780035941.01.T01:CDS
TTATCAGCATCACCAATAAC+AGG 0.448452 7:+373948 None:intergenic
TGTGATCACTTACAGGAATT+CGG 0.452397 7:+370332 None:intergenic
CCTCATCAAGAGACAGGGCT+TGG 0.459572 7:+372374 None:intergenic
GTTAAGGGTTATGTTAATGC+TGG 0.465951 7:-373891 MsG0780035941.01.T01:CDS
ATTAAAATCACTGGCAGAGA+TGG 0.467353 7:-370373 MsG0780035941.01.T01:CDS
TAGAAACTCCAATCAAAGAA+AGG 0.467444 7:+372060 None:intergenic
AGAAACTCCAATCAAAGAAA+GGG 0.470371 7:+372061 None:intergenic
TCAAGGGCATTTGCTGATGC+TGG 0.476092 7:-372340 MsG0780035941.01.T01:CDS
GGTGATGCTGATAATGGTTA+TGG 0.483159 7:-373939 MsG0780035941.01.T01:CDS
AGAGTGCCTCATCAAGAGAC+AGG 0.495586 7:+372368 None:intergenic
AATATGGTGCAGATGGTTCA+AGG 0.496146 7:-370432 MsG0780035941.01.T01:intron
GTGTAGGCTAATATGCTTGA+AGG 0.500548 7:-372152 MsG0780035941.01.T01:intron
CTCTTGATGAGGCACTCTAT+AGG 0.504181 7:-372363 MsG0780035941.01.T01:CDS
ACAAATTTAAGAGAAAATGA+TGG 0.516451 7:-370297 None:intergenic
GCTAATATGCTTGAAGGAGG+AGG 0.526816 7:-372146 MsG0780035941.01.T01:CDS
CCAAGCCCTGTCTCTTGATG+AGG 0.536017 7:-372374 MsG0780035941.01.T01:CDS
CCTCTTGAACTTGAAGACAT+TGG 0.540684 7:-372104 MsG0780035941.01.T01:CDS
AGTTTCTATACAAGCAATGC+AGG 0.543042 7:-372045 MsG0780035941.01.T01:intron
AGACAGGGCTTGGCGCGCAT+CGG 0.543526 7:+372384 None:intergenic
GTTGGCATGCTTCCTGGAGG+AGG 0.545154 7:+371188 None:intergenic
GGAGGTCGTATTCCTCCTCC+AGG 0.553198 7:-371200 MsG0780035941.01.T01:CDS
CTCAGCGAAATCGTCGAACA+AGG 0.556138 7:-373999 MsG0780035941.01.T01:CDS
ATGAGGCACTCTATAGGTCA+AGG 0.559464 7:-372357 MsG0780035941.01.T01:CDS
CCAATGTCTTCAAGTTCAAG+AGG 0.560685 7:+372104 None:intergenic
ACTCTGAGAATTAAAATCAC+TGG 0.562400 7:-370382 MsG0780035941.01.T01:CDS
ACTTGCTTCCAGACAAGAGA+TGG 0.577927 7:-372293 MsG0780035941.01.T01:CDS
TGGATCTGATATTGTGATTG+TGG 0.581868 7:-372413 MsG0780035941.01.T01:CDS
TCGTCTTATTACTCAATCTG+TGG 0.608199 7:-373976 MsG0780035941.01.T01:CDS
TCTCTTTGAAAGCAGCTGAT+CGG 0.610609 7:+371094 None:intergenic
AAAGCGTGTGGTCACACACA+GGG 0.610994 7:-372505 MsG0780035941.01.T01:CDS
TCACACACAGGGGAGGAAAG+TGG 0.615212 7:-372494 MsG0780035941.01.T01:CDS
AAAAGCGTGTGGTCACACAC+AGG 0.622362 7:-372506 MsG0780035941.01.T01:CDS
GAAACTCCAATCAAAGAAAG+GGG 0.623602 7:+372062 None:intergenic
GAAAGTGGTATCGAGAGAAG+AGG 0.623798 7:-372479 MsG0780035941.01.T01:CDS
TCCAATCAAAGAAAGGGGAT+AGG 0.626385 7:+372067 None:intergenic
AGTTCAAGAGGAGTGAGTAT+CGG 0.627598 7:+372116 None:intergenic
GATCAGCTGCTTTCAAAGAG+AGG 0.629756 7:-371092 MsG0780035941.01.T01:intron
TCTCCTATGTGTTCTAGATG+CGG 0.643358 7:+374420 None:intergenic
ATATGGTGCAGATGGTTCAA+GGG 0.645347 7:-370431 MsG0780035941.01.T01:intron
TGAGGCACTCTATAGGTCAA+GGG 0.655122 7:-372356 MsG0780035941.01.T01:CDS
GCGCTGACTGCTATTAAAGG+AGG 0.657198 7:-371218 MsG0780035941.01.T01:CDS
TAGGCTAATATGCTTGAAGG+AGG 0.663696 7:-372149 MsG0780035941.01.T01:CDS
CGTGTGGTCACACACAGGGG+AGG 0.673900 7:-372501 MsG0780035941.01.T01:CDS
AAAGTTGGCATGCTTCCTGG+AGG 0.678103 7:+371185 None:intergenic
GAGTGCCTCATCAAGAGACA+GGG 0.678992 7:+372369 None:intergenic
TCACCGCATCTAGAACACAT+AGG 0.693922 7:-374423 MsG0780035941.01.T01:CDS
GTTGATGCCAGAAATGAGAG+TGG 0.697095 7:-372433 MsG0780035941.01.T01:CDS
TAGGTATCTCCAAAAGCGTG+TGG 0.697406 7:-372517 MsG0780035941.01.T01:CDS
AGTCATGCGAATCAAAGCTG+CGG 0.698225 7:-372455 MsG0780035941.01.T01:CDS
AAGCGTGTGGTCACACACAG+GGG 0.719574 7:-372504 MsG0780035941.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATTAATGATTATCA+AGG + Chr7:372732-372751 None:intergenic 10.0%
!! ATCAAACAATTAAATTTAAA+TGG - Chr7:370514-370533 MsG0780035941.01.T01:intron 10.0%
!! GATTAAATATTATTTATCTT+CGG - Chr7:370605-370624 MsG0780035941.01.T01:intron 10.0%
!! TATGAAATTGTAAAATAATT+AGG - Chr7:371410-371429 MsG0780035941.01.T01:intron 10.0%
!!! AAAAATTGAAATTTTTAGTT+TGG + Chr7:370393-370412 None:intergenic 10.0%
!!! ATTTTATGATTTATGATTTT+GGG + Chr7:373217-373236 None:intergenic 10.0%
!!! TTTTAAAATTCAATTCATTT+AGG - Chr7:371325-371344 MsG0780035941.01.T01:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+CGG - Chr7:373821-373840 MsG0780035941.01.T01:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - Chr7:373821-373840 MsG0780035941.01.T01:intron 100.0%
!! ATAAATCATAAAATCATACT+TGG - Chr7:373223-373242 MsG0780035941.01.T01:intron 15.0%
!! GTATATTTAATAATTCAGTT+TGG - Chr7:371833-371852 MsG0780035941.01.T01:intron 15.0%
!! TCTAATAAAAATTTCATTCT+GGG + Chr7:373132-373151 None:intergenic 15.0%
!!! AAATAATTAGGTTTGTTTTT+CGG - Chr7:371422-371441 MsG0780035941.01.T01:intron 15.0%
!!! ACTAAAAATTTCAATTTTTC+CGG - Chr7:370394-370413 MsG0780035941.01.T01:CDS 15.0%
!!! ATTTTTTGAACAATTTGTTT+TGG + Chr7:370553-370572 None:intergenic 15.0%
!!! GATTTTATGATTTATGATTT+TGG + Chr7:373218-373237 None:intergenic 15.0%
!!! TTATTAGCTTTGTATTTTAT+TGG - Chr7:373954-373973 MsG0780035941.01.T01:CDS 15.0%
!!! TTGTAATTTTAATACATTCA+TGG - Chr7:371956-371975 MsG0780035941.01.T01:intron 15.0%
!!! TTTTATGATTTATGATTTTG+GGG + Chr7:373216-373235 None:intergenic 15.0%
!! AAAAAGTAATAAGCAAACAA+CGG - Chr7:373682-373701 MsG0780035941.01.T01:intron 20.0%
!! AAACAATGGTTTACTTTATT+TGG - Chr7:371992-372011 MsG0780035941.01.T01:intron 20.0%
!! ACAAGTAATTTAATCAAAAC+GGG - Chr7:370676-370695 MsG0780035941.01.T01:intron 20.0%
!! CTAATAAAAATTTCATTCTG+GGG + Chr7:373131-373150 None:intergenic 20.0%
!! GACAAGTAATTTAATCAAAA+CGG - Chr7:370675-370694 MsG0780035941.01.T01:intron 20.0%
!! GATAATAGTAAAAGAAGAAA+GGG - Chr7:372518-372537 MsG0780035941.01.T01:intron 20.0%
!! GCTATACTAATATTTATGTA+TGG - Chr7:372550-372569 MsG0780035941.01.T01:intron 20.0%
!! GTCTAATAAAAATTTCATTC+TGG + Chr7:373133-373152 None:intergenic 20.0%
!! TATCTTCTGTTAGTAATTTA+TGG + Chr7:371923-371942 None:intergenic 20.0%
!! TGAAGTAATTTAAAGAAAGT+TGG + Chr7:372173-372192 None:intergenic 20.0%
!! TGAATATGATCATTAACATT+CGG + Chr7:373321-373340 None:intergenic 20.0%
!! TGATAATAGTAAAAGAAGAA+AGG - Chr7:372517-372536 MsG0780035941.01.T01:CDS 20.0%
!!! ATGACTATATGATTTTAACT+TGG - Chr7:373187-373206 MsG0780035941.01.T01:intron 20.0%
!!! ATTTTGAAATATTGACAATG+TGG - Chr7:372026-372045 MsG0780035941.01.T01:intron 20.0%
!!! CATCATAATGCTATTTTTAT+TGG + Chr7:371242-371261 None:intergenic 20.0%
!!! GAAGAAATTAAGGATATTTT+AGG - Chr7:373566-373585 MsG0780035941.01.T01:intron 20.0%
!!! TAATAGAAACATACCATTTT+TGG + Chr7:372489-372508 None:intergenic 20.0%
!!! TATTTTATTGGCTTGAAAAT+AGG - Chr7:373966-373985 MsG0780035941.01.T01:CDS 20.0%
!!! TTATCTGTTTTACTTCTAAA+GGG - Chr7:374053-374072 MsG0780035941.01.T01:intron 20.0%
!!! TTTATCTGTTTTACTTCTAA+AGG - Chr7:374052-374071 MsG0780035941.01.T01:intron 20.0%
! AAATCATACTTGGTTGTTTA+TGG - Chr7:373233-373252 MsG0780035941.01.T01:intron 25.0%
! AATGTTAAGAGAACTGTTAA+GGG - Chr7:370821-370840 MsG0780035941.01.T01:intron 25.0%
! ACATTTATCGTGTGAATATT+AGG + Chr7:374107-374126 None:intergenic 25.0%
! AGTAACAAAACTCAACTATT+AGG + Chr7:373784-373803 None:intergenic 25.0%
! ATATTTATGTATGGTTGTGT+AGG - Chr7:372559-372578 MsG0780035941.01.T01:intron 25.0%
! ATGTATGTGATTTGACAAAT+TGG + Chr7:373280-373299 None:intergenic 25.0%
! CAACATGTCAAGTTATAATA+AGG + Chr7:372140-372159 None:intergenic 25.0%
! CAAGTAATTTAATCAAAACG+GGG - Chr7:370677-370696 MsG0780035941.01.T01:intron 25.0%
! CAATTCATTTATGTTAATGC+TGG - Chr7:371107-371126 MsG0780035941.01.T01:CDS 25.0%
! CACAATTATAAACATGCTAA+AGG - Chr7:373011-373030 MsG0780035941.01.T01:intron 25.0%
! GAGTATTATATTAGTCAGTT+TGG - Chr7:371606-371625 MsG0780035941.01.T01:intron 25.0%
! GATTATCAAGGTTAAAGAAA+GGG + Chr7:372720-372739 None:intergenic 25.0%
! GTGAAAAAACTTTACACTAT+TGG - Chr7:371282-371301 MsG0780035941.01.T01:intron 25.0%
! TAGGAACTTACATATTAATG+TGG - Chr7:370994-371013 MsG0780035941.01.T01:intron 25.0%
! TCCTTAATTTCTTCAAAAGT+TGG + Chr7:373560-373579 None:intergenic 25.0%
! TGATAATAGATCTTAACAGA+AGG - Chr7:371722-371741 MsG0780035941.01.T01:intron 25.0%
! TGATTATCAAGGTTAAAGAA+AGG + Chr7:372721-372740 None:intergenic 25.0%
! TTTGAACTAACTATATCTCT+AGG - Chr7:373906-373925 MsG0780035941.01.T01:CDS 25.0%
!! AAATTGGTAACCATTTGAAA+TGG + Chr7:373264-373283 None:intergenic 25.0%
!! CTTCTTTTACTATTATCACT+TGG + Chr7:372515-372534 None:intergenic 25.0%
!! TAATACATTCATGGACTAAA+GGG - Chr7:371965-371984 MsG0780035941.01.T01:intron 25.0%
!! TTAATACATTCATGGACTAA+AGG - Chr7:371964-371983 MsG0780035941.01.T01:intron 25.0%
!! TTCTCTTAAATTTGTTCAGT+TGG + Chr7:374425-374444 None:intergenic 25.0%
!!! AGGATTTAAGTTGTATACAT+TGG - Chr7:371166-371185 MsG0780035941.01.T01:CDS 25.0%
!!! ATTTTAATCCTAGAATCTCT+GGG - Chr7:371780-371799 MsG0780035941.01.T01:intron 25.0%
!!! CAAATACAGTGCATTTTTTT+GGG - Chr7:373728-373747 MsG0780035941.01.T01:intron 25.0%
!!! TCAAATACAGTGCATTTTTT+TGG - Chr7:373727-373746 MsG0780035941.01.T01:intron 25.0%
!!! TTTGTTACTTTACTACCATA+AGG - Chr7:373795-373814 MsG0780035941.01.T01:intron 25.0%
AATAGATCATTGAATGTGTG+AGG - Chr7:371534-371553 MsG0780035941.01.T01:intron 30.0%
AGAAACTCCAATCAAAGAAA+GGG + Chr7:372669-372688 None:intergenic 30.0%
ATACTACAACACTCTTACAT+TGG + Chr7:373378-373397 None:intergenic 30.0%
CAACTCCAAACTAAAAGTTT+CGG - Chr7:370436-370455 MsG0780035941.01.T01:intron 30.0%
CAAGATTACAACAACTTACT+TGG - Chr7:371581-371600 MsG0780035941.01.T01:intron 30.0%
CCATATTTATTGTACACATC+AGG + Chr7:374282-374301 None:intergenic 30.0%
CCTGATGTGTACAATAAATA+TGG - Chr7:374279-374298 MsG0780035941.01.T01:intron 30.0%
GAATGTTAAGAGAACTGTTA+AGG - Chr7:370820-370839 MsG0780035941.01.T01:intron 30.0%
GACGTTAAGTTTGTAATGTT+GGG - Chr7:371468-371487 MsG0780035941.01.T01:intron 30.0%
GCATTATGATGTGATTTGAT+TGG - Chr7:371251-371270 MsG0780035941.01.T01:intron 30.0%
TAATCATAGATAGTTAGTCG+TGG - Chr7:373997-374016 MsG0780035941.01.T01:CDS 30.0%
TACAATAAATATGGTGCAGA+TGG - Chr7:374288-374307 MsG0780035941.01.T01:intron 30.0%
TACTCATCACAAATCCTTAA+TGG - Chr7:373348-373367 MsG0780035941.01.T01:intron 30.0%
TAGAAACTCCAATCAAAGAA+AGG + Chr7:372670-372689 None:intergenic 30.0%
TAGTAATTTATGGACCAAAC+TGG + Chr7:371913-371932 None:intergenic 30.0%
TATAGTTAGTTCAAACCAAC+AGG + Chr7:373901-373920 None:intergenic 30.0%
TATGATGTGATTTGATTGGA+TGG - Chr7:371255-371274 MsG0780035941.01.T01:intron 30.0%
TGACGTTAAGTTTGTAATGT+TGG - Chr7:371467-371486 MsG0780035941.01.T01:intron 30.0%
TTGAAATATTGACAATGTGG+AGG - Chr7:372029-372048 MsG0780035941.01.T01:intron 30.0%
TTTAATCAAAACGGGGATTT+AGG - Chr7:370684-370703 MsG0780035941.01.T01:intron 30.0%
! ACTCTGAGAATTAAAATCAC+TGG - Chr7:374345-374364 MsG0780035941.01.T01:intron 30.0%
! ATGTCTATGATTTTCTGTGT+AGG - Chr7:373484-373503 MsG0780035941.01.T01:intron 30.0%
!! AATTAGGTTTGTTTTTCGGT+TGG - Chr7:371426-371445 MsG0780035941.01.T01:intron 30.0%
!! CATTTTAATCCTAGAATCTC+TGG - Chr7:371779-371798 MsG0780035941.01.T01:intron 30.0%
!! GCCAACTTTTGAAGAAATTA+AGG - Chr7:373556-373575 MsG0780035941.01.T01:intron 30.0%
!! TTTTTCGGTTGGTATTTGTA+GGG - Chr7:371437-371456 MsG0780035941.01.T01:intron 30.0%
!!! TGATTTTAATTCTCAGAGTC+CGG + Chr7:374344-374363 None:intergenic 30.0%
!!! TTTTAGTTTGGAGTTGGATT+TGG + Chr7:370432-370451 None:intergenic 30.0%
AATGTATTACTGCGATAGCT+AGG + Chr7:372909-372928 None:intergenic 35.0%
ACTAACGAAAGACACATGTA+AGG + Chr7:371633-371652 None:intergenic 35.0%
ACTTTACTACCATAAGGCTT+GGG - Chr7:373801-373820 MsG0780035941.01.T01:intron 35.0%
AGTTTCTATACAAGCAATGC+AGG - Chr7:372682-372701 MsG0780035941.01.T01:intron 35.0%
ATTAAAATCACTGGCAGAGA+TGG - Chr7:374354-374373 MsG0780035941.01.T01:intron 35.0%
ATTAGCAGAAGTAACATCCT+AGG + Chr7:373169-373188 None:intergenic 35.0%
ATTTCACCTATGCTGGAATT+GGG + Chr7:372858-372877 None:intergenic 35.0%
CTAACGAAAGACACATGTAA+GGG + Chr7:371632-371651 None:intergenic 35.0%
GAAACTCCAATCAAAGAAAG+GGG + Chr7:372668-372687 None:intergenic 35.0%
GACTAAAGGGATCAAAACAA+TGG - Chr7:371978-371997 MsG0780035941.01.T01:intron 35.0%
GCAAAACAATATCCAAGAAC+TGG - Chr7:372931-372950 MsG0780035941.01.T01:intron 35.0%
GTGATGAATTCGAATGATGT+CGG - Chr7:371692-371711 MsG0780035941.01.T01:intron 35.0%
GTTAAGGGTTATGTTAATGC+TGG - Chr7:370836-370855 MsG0780035941.01.T01:intron 35.0%
TACTTTACTACCATAAGGCT+TGG - Chr7:373800-373819 MsG0780035941.01.T01:intron 35.0%
TAGGAGAATTCAGCATGTTT+CGG - Chr7:370323-370342 MsG0780035941.01.T01:CDS 35.0%
TATCAAGGTTAAAGAAAGGG+AGG + Chr7:372717-372736 None:intergenic 35.0%
TATGGCAGATCCATTTCAAA+TGG - Chr7:373251-373270 MsG0780035941.01.T01:intron 35.0%
TCTGTGGATATTCCTGTTAT+TGG - Chr7:370767-370786 MsG0780035941.01.T01:intron 35.0%
TGAAACTGAGTGGATAATGT+CGG - Chr7:371498-371517 MsG0780035941.01.T01:intron 35.0%
TGATTCAGTAAAGCCAAAGT+GGG - Chr7:370346-370365 MsG0780035941.01.T01:CDS 35.0%
TGGATCTGATATTGTGATTG+TGG - Chr7:372314-372333 MsG0780035941.01.T01:CDS 35.0%
TGTGATCACTTACAGGAATT+CGG + Chr7:374398-374417 None:intergenic 35.0%
TTAGGTGCTTGAAATTGTTG+TGG - Chr7:371343-371362 MsG0780035941.01.T01:intron 35.0%
TTATCAGCATCACCAATAAC+AGG + Chr7:370782-370801 None:intergenic 35.0%
TTCATCACCTAACCTACATA+CGG + Chr7:371680-371699 None:intergenic 35.0%
TTCTCCTCTTGTTCCAAAAA+TGG - Chr7:372473-372492 MsG0780035941.01.T01:CDS 35.0%
TTGAAAACAGAACCAGTTCT+TGG + Chr7:372946-372965 None:intergenic 35.0%
TTGTATCATTCTCGAAGATC+AGG - Chr7:371136-371155 MsG0780035941.01.T01:CDS 35.0%
TTTGTTTCCTATACTGCTCA+TGG + Chr7:373076-373095 None:intergenic 35.0%
! AATTTCATTCTGGGGAAAAG+TGG + Chr7:373123-373142 None:intergenic 35.0%
! AGGTGTTATAACTTCCACAA+CGG + Chr7:374262-374281 None:intergenic 35.0%
! ATTTGTGAAGGTGGTGTTTT+AGG - Chr7:370975-370994 MsG0780035941.01.T01:intron 35.0%
! CTTTCTGGAGAAAACTGAAA+AGG + Chr7:373877-373896 None:intergenic 35.0%
! CTTTTCAGTTTTCTCCAGAA+AGG - Chr7:373875-373894 MsG0780035941.01.T01:CDS 35.0%
! TATCAAGCTAACCAGTGTTT+TGG + Chr7:372884-372903 None:intergenic 35.0%
! TCGTCTTATTACTCAATCTG+TGG - Chr7:370751-370770 MsG0780035941.01.T01:intron 35.0%
! TTTTGCTGGTATCATTCTTG+AGG - Chr7:370859-370878 MsG0780035941.01.T01:intron 35.0%
!! CATCACCGAAACTTTTAGTT+TGG + Chr7:370444-370463 None:intergenic 35.0%
!! GTTATTGGTGATGCTGATAA+TGG - Chr7:370782-370801 MsG0780035941.01.T01:intron 35.0%
!! GTTTTTCGGTTGGTATTTGT+AGG - Chr7:371436-371455 MsG0780035941.01.T01:intron 35.0%
!!! CATACCATTTTTGGAACAAG+AGG + Chr7:372480-372499 None:intergenic 35.0%
!!! CATTTTGCTGTTTCATTGCT+AGG - Chr7:372191-372210 MsG0780035941.01.T01:intron 35.0%
!!! CGAAACTTTTAGTTTGGAGT+TGG + Chr7:370438-370457 None:intergenic 35.0%
!!! GATTTTAATTCTCAGAGTCC+GGG + Chr7:374343-374362 None:intergenic 35.0%
!!! TATGTTAATGCTGGTTTTGC+TGG - Chr7:370845-370864 MsG0780035941.01.T01:intron 35.0%
AAAAGCTTCCATCTCTTGTC+TGG + Chr7:372445-372464 None:intergenic 40.0%
AAACTGAGTGGATAATGTCG+GGG - Chr7:371500-371519 MsG0780035941.01.T01:intron 40.0%
AATAAGCAAACAACGGCAGT+AGG - Chr7:373689-373708 MsG0780035941.01.T01:intron 40.0%
AATATGGTGCAGATGGTTCA+AGG - Chr7:374295-374314 MsG0780035941.01.T01:intron 40.0%
AGATCATTGAATGTGTGAGG+TGG - Chr7:371537-371556 MsG0780035941.01.T01:intron 40.0%
AGTTCAAGAGGAGTGAGTAT+CGG + Chr7:372614-372633 None:intergenic 40.0%
ATACGGTTCAACAGTTTCAG+GGG - Chr7:372061-372080 MsG0780035941.01.T01:CDS 40.0%
ATATGGTGCAGATGGTTCAA+GGG - Chr7:374296-374315 MsG0780035941.01.T01:intron 40.0%
ATCAGATCCACTCTCATTTC+TGG + Chr7:372304-372323 None:intergenic 40.0%
ATCATATCACACTGTGTGTG+TGG - Chr7:370950-370969 MsG0780035941.01.T01:intron 40.0%
ATGATACCCAATTCCAGCAT+AGG - Chr7:372849-372868 MsG0780035941.01.T01:intron 40.0%
CATCACAAATCCTTAATGGC+AGG - Chr7:373352-373371 MsG0780035941.01.T01:intron 40.0%
CATTTCACCTATGCTGGAAT+TGG + Chr7:372859-372878 None:intergenic 40.0%
CCTCTTGAACTTGAAGACAT+TGG - Chr7:372623-372642 MsG0780035941.01.T01:intron 40.0%
CTCAGACTACTACAGTAAAG+TGG + Chr7:372803-372822 None:intergenic 40.0%
CTTTACTACCATAAGGCTTG+GGG - Chr7:373802-373821 MsG0780035941.01.T01:intron 40.0%
GAAACTGAGTGGATAATGTC+GGG - Chr7:371499-371518 MsG0780035941.01.T01:intron 40.0%
GATACGGTTCAACAGTTTCA+GGG - Chr7:372060-372079 MsG0780035941.01.T01:CDS 40.0%
GGTGAAATGAACCAAAACAC+TGG - Chr7:372870-372889 MsG0780035941.01.T01:intron 40.0%
GTGATTCAGTAAAGCCAAAG+TGG - Chr7:370345-370364 MsG0780035941.01.T01:CDS 40.0%
GTGTAGGCTAATATGCTTGA+AGG - Chr7:372575-372594 MsG0780035941.01.T01:intron 40.0%
GTGTGTGTGGATATTTGTGA+AGG - Chr7:370963-370982 MsG0780035941.01.T01:intron 40.0%
TACTACAGTAAAGTGGCTCT+TGG + Chr7:372796-372815 None:intergenic 40.0%
TAGGCTAATATGCTTGAAGG+AGG - Chr7:372578-372597 MsG0780035941.01.T01:intron 40.0%
TATTGACAATGTGGAGGACT+AGG - Chr7:372035-372054 MsG0780035941.01.T01:intron 40.0%
TCCAATCAAAGAAAGGGGAT+AGG + Chr7:372663-372682 None:intergenic 40.0%
TGATACGGTTCAACAGTTTC+AGG - Chr7:372059-372078 MsG0780035941.01.T01:CDS 40.0%
TGGTATCATTCTTGAGGATC+AGG - Chr7:370865-370884 MsG0780035941.01.T01:intron 40.0%
TGTGTGGATATTTGTGAAGG+TGG - Chr7:370966-370985 MsG0780035941.01.T01:intron 40.0%
TTATGGACCAAACTGGCTAA+CGG + Chr7:371906-371925 None:intergenic 40.0%
TTGATACACCCAGAGATTCT+AGG + Chr7:371791-371810 None:intergenic 40.0%
TTGGTTCATTTCACCTATGC+TGG + Chr7:372865-372884 None:intergenic 40.0%
TTGTCTGCTCTGTATCAACT+TGG + Chr7:374221-374240 None:intergenic 40.0%
TTTACTACCATAAGGCTTGG+GGG - Chr7:373803-373822 MsG0780035941.01.T01:intron 40.0%
! CCAATGTCTTCAAGTTCAAG+AGG + Chr7:372626-372645 None:intergenic 40.0%
! CTTGAGGATCAGGTTAGTTA+AGG - Chr7:370875-370894 MsG0780035941.01.T01:intron 40.0%
! GATTTGGAGATTGAAAGCAC+CGG + Chr7:370416-370435 None:intergenic 40.0%
! GGGATGAATTTGAAACTGAG+TGG - Chr7:371488-371507 MsG0780035941.01.T01:intron 40.0%
! GGTGTTATAACTTCCACAAC+GGG + Chr7:374261-374280 None:intergenic 40.0%
! TCTCCTATGTGTTCTAGATG+CGG + Chr7:370310-370329 None:intergenic 40.0%
! TCTCTTTGAAAGCAGCTGAT+CGG + Chr7:373636-373655 None:intergenic 40.0%
!! AAAAGTGGACTAACACTGGT+TGG + Chr7:373108-373127 None:intergenic 40.0%
!! GGTGATGCTGATAATGGTTA+TGG - Chr7:370788-370807 MsG0780035941.01.T01:intron 40.0%
AACTATCGAAGATCCCGTTG+TGG - Chr7:374245-374264 MsG0780035941.01.T01:intron 45.0%
ACGCAATCCATGAGCAGTAT+AGG - Chr7:373066-373085 MsG0780035941.01.T01:intron 45.0%
ACTTGCTTCCAGACAAGAGA+TGG - Chr7:372434-372453 MsG0780035941.01.T01:CDS 45.0%
AGACTAGAATAGATGCGCCT+AGG - Chr7:373149-373168 MsG0780035941.01.T01:intron 45.0%
AGTCATGCGAATCAAAGCTG+CGG - Chr7:372272-372291 MsG0780035941.01.T01:CDS 45.0%
CATACGTGTCTTCCGTATGT+AGG - Chr7:371665-371684 MsG0780035941.01.T01:intron 45.0%
GCCTATCCCCTTTCTTTGAT+TGG - Chr7:372659-372678 MsG0780035941.01.T01:intron 45.0%
GCTAATATGCTTGAAGGAGG+AGG - Chr7:372581-372600 MsG0780035941.01.T01:intron 45.0%
GGGACCAGATTCCAGAAAAA+GGG + Chr7:374323-374342 None:intergenic 45.0%
GTGTCTTCCGTATGTAGGTT+AGG - Chr7:371670-371689 MsG0780035941.01.T01:intron 45.0%
GTTGATGCCAGAAATGAGAG+TGG - Chr7:372294-372313 MsG0780035941.01.T01:CDS 45.0%
TACAAGCAATGCAGGTGACA+TGG - Chr7:372690-372709 MsG0780035941.01.T01:intron 45.0%
TCAAAAGTTGGCATGCTTCC+TGG + Chr7:373548-373567 None:intergenic 45.0%
TCATGAAGCTGTTCCCACTT+TGG + Chr7:370362-370381 None:intergenic 45.0%
TTACTACCATAAGGCTTGGG+GGG - Chr7:373804-373823 MsG0780035941.01.T01:intron 45.0%
TTCAAACCAACAGGCCTTTC+TGG + Chr7:373892-373911 None:intergenic 45.0%
! AGCTGCTTTCAAAGAGAGGT+TGG - Chr7:373639-373658 MsG0780035941.01.T01:intron 45.0%
! ATGAGGCACTCTATAGGTCA+AGG - Chr7:372370-372389 MsG0780035941.01.T01:CDS 45.0%
! CTCGAAGATCAGGTTAGCTA+AGG - Chr7:371146-371165 MsG0780035941.01.T01:CDS 45.0%
! CTCTTGATGAGGCACTCTAT+AGG - Chr7:372364-372383 MsG0780035941.01.T01:CDS 45.0%
! CTTACATTGGCCTGCCATTA+AGG + Chr7:373365-373384 None:intergenic 45.0%
! GAAAGTGGTATCGAGAGAAG+AGG - Chr7:372248-372267 MsG0780035941.01.T01:intron 45.0%
! GATCAGCTGCTTTCAAAGAG+AGG - Chr7:373635-373654 MsG0780035941.01.T01:intron 45.0%
! TAGGTATCTCCAAAAGCGTG+TGG - Chr7:372210-372229 MsG0780035941.01.T01:intron 45.0%
! TCACCGCATCTAGAACACAT+AGG - Chr7:370304-370323 MsG0780035941.01.T01:CDS 45.0%
! TGAGGCACTCTATAGGTCAA+GGG - Chr7:372371-372390 MsG0780035941.01.T01:CDS 45.0%
! TGGAGAGTGTGATCACTTAC+AGG + Chr7:374405-374424 None:intergenic 45.0%
! TTTTCTCCAGAAAGGCCTGT+TGG - Chr7:373883-373902 MsG0780035941.01.T01:CDS 45.0%
!! GATGCGCTGACTGCTATTAA+AGG - Chr7:373506-373525 MsG0780035941.01.T01:intron 45.0%
!! TGTGGAGGACTAGGTTGATA+CGG - Chr7:372044-372063 MsG0780035941.01.T01:intron 45.0%
!!! CTTTTTCTGGAATCTGGTCC+CGG - Chr7:374322-374341 MsG0780035941.01.T01:intron 45.0%
AAAGCGTGTGGTCACACACA+GGG - Chr7:372222-372241 MsG0780035941.01.T01:intron 50.0%
AAAGTTGGCATGCTTCCTGG+AGG + Chr7:373545-373564 None:intergenic 50.0%
CGGGACCAGATTCCAGAAAA+AGG + Chr7:374324-374343 None:intergenic 50.0%
CTCAGCGAAATCGTCGAACA+AGG - Chr7:370728-370747 MsG0780035941.01.T01:intron 50.0%
GAGTGCCTCATCAAGAGACA+GGG + Chr7:372361-372380 None:intergenic 50.0%
GTGTCTTCCGTTAGCCAGTT+TGG - Chr7:371896-371915 MsG0780035941.01.T01:intron 50.0%
TACTACCATAAGGCTTGGGG+GGG - Chr7:373805-373824 MsG0780035941.01.T01:intron 50.0%
! AAAAGCGTGTGGTCACACAC+AGG - Chr7:372221-372240 MsG0780035941.01.T01:intron 50.0%
! AGAGTGCCTCATCAAGAGAC+AGG + Chr7:372362-372381 None:intergenic 50.0%
! GGTTCAAGGGACCCTTTTTC+TGG - Chr7:374309-374328 MsG0780035941.01.T01:intron 50.0%
! GTGGACTAACACTGGTTGGA+TGG + Chr7:373104-373123 None:intergenic 50.0%
! TGTGTGTGACCACACGCTTT+TGG + Chr7:372222-372241 None:intergenic 50.0%
!! GAGGTGGTGCTATAGTCTCT+GGG - Chr7:371553-371572 MsG0780035941.01.T01:intron 50.0%
!! GCGCTGACTGCTATTAAAGG+AGG - Chr7:373509-373528 MsG0780035941.01.T01:intron 50.0%
!! GGGGAAAAGTGGACTAACAC+TGG + Chr7:373112-373131 None:intergenic 50.0%
!! TCAAGGGCATTTGCTGATGC+TGG - Chr7:372387-372406 MsG0780035941.01.T01:CDS 50.0%
!! TGAGGTGGTGCTATAGTCTC+TGG - Chr7:371552-371571 MsG0780035941.01.T01:intron 50.0%
!!! GGGACCCTTTTTCTGGAATC+TGG - Chr7:374316-374335 MsG0780035941.01.T01:intron 50.0%
AAGCGTGTGGTCACACACAG+GGG - Chr7:372223-372242 MsG0780035941.01.T01:intron 55.0%
ACTACCATAAGGCTTGGGGG+GGG - Chr7:373806-373825 MsG0780035941.01.T01:intron 55.0%
CCAAGCCCTGTCTCTTGATG+AGG - Chr7:372353-372372 MsG0780035941.01.T01:CDS 55.0%
CCTCATCAAGAGACAGGGCT+TGG + Chr7:372356-372375 None:intergenic 55.0%
TCACACACAGGGGAGGAAAG+TGG - Chr7:372233-372252 MsG0780035941.01.T01:intron 55.0%
CTACCATAAGGCTTGGGGGG+GGG - Chr7:373807-373826 MsG0780035941.01.T01:intron 60.0%
GGAGGTCGTATTCCTCCTCC+AGG - Chr7:373527-373546 MsG0780035941.01.T01:intron 60.0%
GTTGGCATGCTTCCTGGAGG+AGG + Chr7:373542-373561 None:intergenic 60.0%
TACCATAAGGCTTGGGGGGG+GGG - Chr7:373808-373827 MsG0780035941.01.T01:intron 60.0%
ACCATAAGGCTTGGGGGGGG+GGG - Chr7:373809-373828 MsG0780035941.01.T01:intron 65.0%
AGACAGGGCTTGGCGCGCAT+CGG + Chr7:372346-372365 None:intergenic 65.0%
CGTGTGGTCACACACAGGGG+AGG - Chr7:372226-372245 MsG0780035941.01.T01:intron 65.0%
ATAAGGCTTGGGGGGGGGGG+GGG - Chr7:373812-373831 MsG0780035941.01.T01:intron 70.0%
CATAAGGCTTGGGGGGGGGG+GGG - Chr7:373811-373830 MsG0780035941.01.T01:intron 70.0%
CCATAAGGCTTGGGGGGGGG+GGG - Chr7:373810-373829 MsG0780035941.01.T01:intron 70.0%
CCCCCCCCCCCCAAGCCTTA+TGG + Chr7:373813-373832 None:intergenic 75.0%
GGGGGGGGCGGCTATGTGCA+GGG - Chr7:373849-373868 MsG0780035941.01.T01:intron 75.0%
TAAGGCTTGGGGGGGGGGGG+GGG - Chr7:373813-373832 MsG0780035941.01.T01:intron 75.0%
! AAGGCTTGGGGGGGGGGGGG+GGG - Chr7:373814-373833 MsG0780035941.01.T01:intron 80.0%
! GGGGGGGGGCGGCTATGTGC+AGG - Chr7:373848-373867 MsG0780035941.01.T01:intron 80.0%
! AGGCTTGGGGGGGGGGGGGG+GGG - Chr7:373815-373834 MsG0780035941.01.T01:intron 85.0%
! CTTGGGGGGGGGGGGGGGGG+GGG - Chr7:373818-373837 MsG0780035941.01.T01:intron 90.0%
! GCTTGGGGGGGGGGGGGGGG+GGG - Chr7:373817-373836 MsG0780035941.01.T01:intron 90.0%
! GGCTTGGGGGGGGGGGGGGG+GGG - Chr7:373816-373835 MsG0780035941.01.T01:intron 90.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - Chr7:373819-373838 MsG0780035941.01.T01:intron 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - Chr7:373820-373839 MsG0780035941.01.T01:intron 95.0%
Chromosome Type Strat End Strand Name
Chr7 gene 370300 374449 370300 ID=MsG0780035941.01;Name=MsG0780035941.01
Chr7 mRNA 370300 374449 370300 ID=MsG0780035941.01.T01;Parent=MsG0780035941.01;Name=MsG0780035941.01.T01;_AED=0.49;_eAED=0.55;_QI=0|0|0|1|1|1|6|0|310
Chr7 exon 374397 374449 374397 ID=MsG0780035941.01.T01:exon:15452;Parent=MsG0780035941.01.T01
Chr7 exon 373863 374043 373863 ID=MsG0780035941.01.T01:exon:15451;Parent=MsG0780035941.01.T01
Chr7 exon 372255 372536 372255 ID=MsG0780035941.01.T01:exon:15450;Parent=MsG0780035941.01.T01
Chr7 exon 372046 372168 372046 ID=MsG0780035941.01.T01:exon:15449;Parent=MsG0780035941.01.T01
Chr7 exon 371093 371243 371093 ID=MsG0780035941.01.T01:exon:15448;Parent=MsG0780035941.01.T01
Chr7 exon 370300 370442 370300 ID=MsG0780035941.01.T01:exon:15447;Parent=MsG0780035941.01.T01
Chr7 CDS 374397 374449 374397 ID=MsG0780035941.01.T01:cds;Parent=MsG0780035941.01.T01
Chr7 CDS 373863 374043 373863 ID=MsG0780035941.01.T01:cds;Parent=MsG0780035941.01.T01
Chr7 CDS 372255 372536 372255 ID=MsG0780035941.01.T01:cds;Parent=MsG0780035941.01.T01
Chr7 CDS 372046 372168 372046 ID=MsG0780035941.01.T01:cds;Parent=MsG0780035941.01.T01
Chr7 CDS 371093 371243 371093 ID=MsG0780035941.01.T01:cds;Parent=MsG0780035941.01.T01
Chr7 CDS 370300 370442 370300 ID=MsG0780035941.01.T01:cds;Parent=MsG0780035941.01.T01
Gene Sequence

>MsG0780035941.01.T01

ATGGTCACCGCATCTAGAACACATAGGAGAATTCAGCATGTTTCGGTGATTCAGAGTACTTTAGCTAAAGTAAAACTCAGCGAAATCGTCGAACAAGGTCGTCTTATTACTCAATCTGTGGATATTCCTGTTATTGGTGATGCTGATAATGGTTATGGTAATGCTATGAATGTTAAGAGAACTGTTAAGGGTTATGTTAATGCTGGTTTTGCTGGTATCATTCTTGAGGATCAGGTATCTCCAAAAGCGTGTGGTCACACACAGGGGAGGAAAGTGGTATCGAGAGAAGAGGCAGTCATGCGAATCAAAGCTGCGGTTGATGCCAGAAATGAGAGTGGATCTGATATTGTGATTGTGGCTCGCACCGATGCGCGCCAAGCCCTGTCTCTTGATGAGGCACTCTATAGGTCAAGGGCATTTGCTGATGCTGGAGCTGATGTTGTTTTTATAGACGCACTTGCTTCCAGACAAGAGATGGAAGCTTTTTGTCAAGTTTCTCCTCTTGTTCCAAAAATGGCTAATATGCTTGAAGGAGGAGGCAAAACACCGATACTCACTCCTCTTGAACTTGAAGACATTGGTTATAAAATTGTTGCCTATCCCCTTTCTTTGATTGGAGTTTCTATACAAGCAATGCAGGATGCGCTGACTGCTATTAAAGGAGGTCGTATTCCTCCTCCAGGAAGCATGCCAACTTTTGAAGAAATTAAGGATATTTTAGGTTTCAACGCATATTATGAAGAAGAGAAGCGTTATGCTACAAGTACCGATCAGCTGCTTTCAAAGAGAGATGGTTCAAGGGACCCTTTTTCTGGAATCTGGTCCCGGACTCTGAGAATTAAAATCACTGGCAGAGATGGAGTCGAGAAACTTGATCTCCGAATTCCTGTAAGTGATCACACTCTCCAACTGAACAAATTTAAGAGAAAATGA
Protein sequence

>MsG0780035941.01.T01

MVTASRTHRRIQHVSVIQSTLAKVKLSEIVEQGRLITQSVDIPVIGDADNGYGNAMNVKRTVKGYVNAGFAGIILEDQVSPKACGHTQGRKVVSREEAVMRIKAAVDARNESGSDIVIVARTDARQALSLDEALYRSRAFADAGADVVFIDALASRQEMEAFCQVSPLVPKMANMLEGGGKTPILTPLELEDIGYKIVAYPLSLIGVSIQAMQDALTAIKGGRIPPPGSMPTFEEIKDILGFNAYYEEEKRYATSTDQLLSKRDGSRDPFSGIWSRTLRIKITGRDGVEKLDLRIPVSDHTLQLNKFKRK*