AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036905.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036905.01.T01 MTR_7g023350 98.810 252 3 0 1 252 1 252 5.34e-178 489
MsG0780036905.01.T01 MTR_1g115405 85.317 252 37 0 1 252 1 252 5.76e-155 431
MsG0780036905.01.T01 MTR_4g063090 77.778 252 56 0 1 252 1 252 5.62e-133 375
MsG0780036905.01.T01 MTR_7g103030 69.444 252 75 2 1 252 1 250 3.45e-109 315
MsG0780036905.01.T01 MTR_1g077540 53.488 258 114 1 1 252 1 258 5.89e-98 287
MsG0780036905.01.T01 MTR_2g101370 60.324 247 96 2 6 252 5 249 1.05e-94 278
MsG0780036905.01.T01 MTR_8g013680 59.109 247 99 2 6 252 4 248 2.12e-93 275
MsG0780036905.01.T01 MTR_6g069040 56.078 255 109 1 1 252 1 255 7.89e-93 274
MsG0780036905.01.T01 MTR_1g006490 52.227 247 113 3 5 251 3 244 1.45e-81 245
MsG0780036905.01.T01 MTR_5g012810 54.032 248 111 2 5 252 3 247 1.03e-77 235
MsG0780036905.01.T01 MTR_1g006590 50.617 243 115 3 5 247 3 240 1.37e-76 232
MsG0780036905.01.T01 MTR_2g060360 40.167 239 136 2 13 251 11 242 2.63e-57 183
MsG0780036905.01.T01 MTR_2g094270 39.583 240 120 7 21 240 40 274 2.11e-39 138
MsG0780036905.01.T01 MTR_7g101190 39.331 239 127 7 13 235 31 267 2.33e-36 130
MsG0780036905.01.T01 MTR_3g118010 37.555 229 129 5 21 238 37 262 2.02e-35 127
MsG0780036905.01.T01 MTR_4g059390 36.820 239 127 7 21 240 39 272 4.29e-32 119
MsG0780036905.01.T01 MTR_5g010150 35.656 244 137 7 10 239 41 278 4.47e-32 119
MsG0780036905.01.T01 MTR_8g098375 35.124 242 141 6 10 239 41 278 6.40e-32 119
MsG0780036905.01.T01 MTR_1g095070 41.436 181 94 4 69 238 25 204 2.59e-30 112
MsG0780036905.01.T01 MTR_5g063930 34.874 238 138 6 17 248 33 259 4.74e-30 113
MsG0780036905.01.T01 MTR_4g415300 36.864 236 122 8 21 239 56 281 9.89e-30 113
MsG0780036905.01.T01 MTR_5g082070 34.568 243 132 7 10 234 44 277 4.36e-28 108
MsG0780036905.01.T01 MTR_3g070210 33.195 241 138 6 10 234 44 277 5.89e-28 108
MsG0780036905.01.T01 MTR_2g094270 37.864 206 106 6 21 209 40 240 1.51e-27 107
MsG0780036905.01.T01 MTR_4g084880 33.333 246 156 3 9 251 20 260 7.08e-26 102
MsG0780036905.01.T01 MTR_3g008920 32.479 234 141 4 20 250 25 244 9.24e-23 94.0
MsG0780036905.01.T01 MTR_1g097840 33.906 233 124 8 25 246 78 291 1.98e-22 94.0
MsG0780036905.01.T01 MTR_5g079570 33.333 219 132 3 20 235 39 246 2.62e-22 92.8
MsG0780036905.01.T01 MTR_2g017620 32.906 234 144 6 20 250 23 246 2.81e-21 90.1
MsG0780036905.01.T01 MTR_2g017620 32.906 234 144 6 20 250 37 260 4.29e-21 89.7
MsG0780036905.01.T01 MTR_2g017620 34.857 175 110 3 78 251 9 180 1.43e-20 86.7
MsG0780036905.01.T01 MTR_2g017590 31.602 231 151 3 20 250 35 258 2.62e-20 87.8
MsG0780036905.01.T01 MTR_2g104940 29.956 227 151 4 25 251 84 302 9.58e-20 86.7
MsG0780036905.01.T01 MTR_1g095070 38.365 159 86 4 69 216 25 182 1.29e-19 84.0
MsG0780036905.01.T01 MTR_4g006730 29.817 218 145 3 25 242 79 288 2.03e-19 85.9
MsG0780036905.01.T01 MTR_8g087710 30.303 231 154 3 20 250 38 261 1.31e-18 83.2
MsG0780036905.01.T01 MTR_2g017660 30.702 228 148 4 13 237 28 248 1.46e-18 82.8
MsG0780036905.01.T01 MTR_7g010650 31.718 227 141 5 21 245 37 251 2.36e-18 82.4
MsG0780036905.01.T01 MTR_3g070210 30.088 226 135 6 10 219 44 262 1.82e-17 80.1
MsG0780036905.01.T01 MTR_8g087720 29.741 232 156 2 20 251 37 261 2.15e-17 79.7
MsG0780036905.01.T01 MTR_4g006730 29.187 209 140 3 34 242 1 201 3.08e-17 78.2
MsG0780036905.01.T01 MTR_4g006630 29.187 209 140 3 34 242 1 201 4.92e-17 77.8
MsG0780036905.01.T01 MTR_2g017610 32.701 211 129 5 20 227 37 237 1.37e-16 77.4
MsG0780036905.01.T01 MTR_5g010150 32.203 177 108 4 10 179 41 212 2.16e-16 75.9
MsG0780036905.01.T01 MTR_4g059390 33.918 171 96 5 21 179 39 204 2.71e-16 75.5
MsG0780036905.01.T01 MTR_2g017570 32.227 211 130 5 20 227 37 237 3.43e-16 76.3
MsG0780036905.01.T01 MTR_4g075590 32.461 191 103 8 69 239 82 266 2.38e-15 74.7
MsG0780036905.01.T01 MTR_1g070385 30.488 164 111 2 79 242 115 275 3.99e-15 75.1
MsG0780036905.01.T01 MTR_8g098375 30.857 175 113 3 10 179 41 212 4.51e-15 72.8
MsG0780036905.01.T01 MTR_4g075570 31.088 193 103 9 69 239 96 280 7.84e-15 73.2
MsG0780036905.01.T01 MTR_4g415300 33.728 169 93 5 21 179 56 215 1.19e-14 71.2
MsG0780036905.01.T01 MTR_3g070210 31.210 157 92 4 21 168 55 204 1.72e-12 65.1
MsG0780036905.01.T01 MTR_8g468730 34.000 100 47 2 139 238 1 81 2.82e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036905.01.T01 AT4G01470 83.730 252 41 0 1 252 1 252 8.86e-154 428
MsG0780036905.01.T01 AT2G36830 72.222 252 69 1 1 252 1 251 1.07e-127 362
MsG0780036905.01.T01 AT3G26520 70.356 253 74 1 1 252 1 253 3.81e-122 348
MsG0780036905.01.T01 AT3G16240 55.061 247 111 0 6 252 4 250 2.27e-92 273
MsG0780036905.01.T01 AT1G17810 54.688 256 104 2 9 252 12 267 1.62e-89 266
MsG0780036905.01.T01 AT1G73190 54.086 257 105 2 9 252 12 268 2.88e-89 265
MsG0780036905.01.T01 AT5G47450 54.251 247 111 1 5 251 3 247 6.03e-89 264
MsG0780036905.01.T01 AT4G17340 53.659 246 114 0 5 250 3 248 2.47e-80 242
MsG0780036905.01.T01 AT2G25810 51.004 249 117 3 3 251 1 244 1.15e-76 233
MsG0780036905.01.T01 AT3G47440 39.316 234 141 1 18 251 20 252 3.29e-52 170
MsG0780036905.01.T01 AT3G54820 36.100 241 138 6 13 238 30 269 1.57e-36 130
MsG0780036905.01.T01 AT3G53420 38.696 230 125 6 21 235 39 267 1.20e-34 126
MsG0780036905.01.T01 AT3G53420 38.696 230 125 6 21 235 39 267 1.20e-34 126
MsG0780036905.01.T01 AT2G37170 37.391 230 128 6 21 235 37 265 4.95e-34 124
MsG0780036905.01.T01 AT4G35100 37.118 229 130 5 21 238 38 263 7.76e-34 124
MsG0780036905.01.T01 AT4G35100 37.118 229 130 5 21 238 38 263 7.76e-34 124
MsG0780036905.01.T01 AT2G37170 36.777 242 136 7 21 247 80 319 8.89e-34 124
MsG0780036905.01.T01 AT2G16850 36.681 229 131 5 21 238 36 261 1.64e-33 122
MsG0780036905.01.T01 AT2G37180 36.957 230 129 6 21 235 37 265 3.32e-33 122
MsG0780036905.01.T01 AT5G60660 36.481 233 132 6 21 238 39 270 3.53e-32 119
MsG0780036905.01.T01 AT2G39010 36.087 230 131 5 21 235 38 266 8.81e-32 118
MsG0780036905.01.T01 AT4G00430 35.628 247 132 8 10 239 42 278 4.53e-30 114
MsG0780036905.01.T01 AT4G23400 35.776 232 130 7 21 239 53 278 1.68e-29 112
MsG0780036905.01.T01 AT2G45960 35.685 241 131 7 10 234 41 273 1.53e-28 110
MsG0780036905.01.T01 AT1G01620 34.914 232 125 7 21 235 52 274 2.25e-28 109
MsG0780036905.01.T01 AT3G61430 35.498 231 123 7 21 234 52 273 2.96e-28 109
MsG0780036905.01.T01 AT3G61430 35.498 231 123 7 21 234 52 273 2.96e-28 109
MsG0780036905.01.T01 AT1G01620 38.503 187 93 6 66 235 21 202 7.44e-27 103
MsG0780036905.01.T01 AT1G80760 30.802 237 146 5 21 252 80 303 4.29e-22 93.2
MsG0780036905.01.T01 AT5G37810 34.595 185 117 2 68 250 83 265 5.04e-21 89.7
MsG0780036905.01.T01 AT5G37820 34.054 185 118 2 68 250 119 301 1.06e-20 89.7
MsG0780036905.01.T01 AT5G37820 34.054 185 118 2 68 250 83 265 1.25e-20 89.0
MsG0780036905.01.T01 AT3G06100 29.091 220 149 4 18 237 43 255 2.96e-19 84.7
MsG0780036905.01.T01 AT2G45960 32.340 235 125 8 10 218 41 267 9.63e-19 84.0
MsG0780036905.01.T01 AT4G10380 30.043 233 153 5 16 246 71 295 2.72e-18 82.8
MsG0780036905.01.T01 AT3G06100 31.492 181 122 2 57 237 29 207 2.88e-18 81.3
MsG0780036905.01.T01 AT1G52180 52.703 74 35 0 143 216 51 124 3.35e-18 78.6
MsG0780036905.01.T01 AT2G45960 32.735 223 126 7 10 216 41 255 9.17e-18 80.9
MsG0780036905.01.T01 AT4G19030 28.452 239 155 5 20 250 54 284 1.13e-17 80.9
MsG0780036905.01.T01 AT4G18910 30.939 181 114 3 78 250 104 281 2.36e-17 80.1
MsG0780036905.01.T01 AT2G39010 35.443 158 89 5 21 168 38 192 5.76e-16 75.1
MsG0780036905.01.T01 AT1G31885 31.674 221 125 8 20 227 42 249 5.02e-15 73.9
MsG0780036905.01.T01 AT1G31885 33.520 179 102 4 68 234 29 202 1.03e-14 72.4
MsG0780036905.01.T01 AT3G06100 33.835 133 86 2 105 237 44 174 4.76e-14 68.9
MsG0780036905.01.T01 AT4G00430 33.136 169 94 5 10 168 42 201 9.68e-14 68.9

Find 59 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATTGCTGCACCAATAAA+TGG 0.171426 7:+16035452 None:intergenic
ATGAATCCAGCTGTTTCTTT+TGG 0.180792 7:-16035527 MsG0780036905.01.T01:CDS
TATTGGGTCGGCCCATTTAT+TGG 0.230799 7:-16035464 MsG0780036905.01.T01:CDS
GGACTCATCATTGGGTCTAT+TGG 0.266787 7:-16035481 MsG0780036905.01.T01:CDS
GAGATCCAATTGCAATTCTA+TGG 0.275529 7:+16038065 None:intergenic
GCAGGCAAACTTACCAATAA+TGG 0.309935 7:-16036450 MsG0780036905.01.T01:intron
AGGTGTTGCAGGGCCATTAT+TGG 0.322904 7:+16036437 None:intergenic
ATGAGGCCAGCAGGTGTTGC+AGG 0.333483 7:+16036426 None:intergenic
GTCACATTTGGTGCCTTCAT+TGG 0.342791 7:-16036318 MsG0780036905.01.T01:CDS
TTTGAAATTGTGATGACATT+TGG 0.356984 7:-16035680 MsG0780036905.01.T01:CDS
ATCTATGATAATATCTTCAT+TGG 0.367388 7:-16035422 MsG0780036905.01.T01:CDS
CTATTTGTTGCTGTTTCTGT+TGG 0.374459 7:-16036375 MsG0780036905.01.T01:CDS
TATTGGATTGCACAGTTACT+TGG 0.387123 7:-16036264 MsG0780036905.01.T01:CDS
TTGGGCCTGCTGTTGTTAGT+TGG 0.390659 7:-16035508 MsG0780036905.01.T01:CDS
AGAATTGCAATTGGATCTCC+TGG 0.392229 7:-16038061 MsG0780036905.01.T01:CDS
GTTGGACATGGACTCATCAT+TGG 0.396977 7:-16035490 MsG0780036905.01.T01:CDS
GACTCATCATTGGGTCTATT+GGG 0.404201 7:-16035480 MsG0780036905.01.T01:CDS
ATTATTGCTCCAATTGCAAT+TGG 0.414156 7:-16035602 MsG0780036905.01.T01:CDS
TCTGTTGGAGCAAACATCTC+TGG 0.415262 7:-16036360 MsG0780036905.01.T01:CDS
TTAGCTGGTGGAGCATTTGA+TGG 0.419968 7:-16035557 MsG0780036905.01.T01:CDS
GCATCACTATCTCATGCATT+TGG 0.425431 7:-16036399 MsG0780036905.01.T01:CDS
ATTGCAATTGGTGTTATTGT+TGG 0.426769 7:-16035590 MsG0780036905.01.T01:CDS
ATTCTTCTTAAGTCCGCTTC+TGG 0.426936 7:-16036225 MsG0780036905.01.T01:CDS
ACAATAACACCAATTGCAAT+TGG 0.431013 7:+16035593 None:intergenic
GCAATCCATAGAATTGCAAT+TGG 0.439495 7:-16038070 MsG0780036905.01.T01:CDS
TATCCTCAGATATATCAGTA+TGG 0.456437 7:-16035715 MsG0780036905.01.T01:CDS
CTGCTGTTGTTAGTTGGACA+TGG 0.469672 7:-16035502 MsG0780036905.01.T01:CDS
ATTGGATCTCCTGGAGAGGC+TGG 0.474353 7:-16038052 MsG0780036905.01.T01:CDS
TGCTGGTCAAGGATCTGGCA+TGG 0.480748 7:-16037969 MsG0780036905.01.T01:CDS
TTGGACATGGACTCATCATT+GGG 0.484496 7:-16035489 MsG0780036905.01.T01:CDS
CAATTGCTGCACCAATAAAT+GGG 0.486680 7:+16035453 None:intergenic
AATATCTTCATTGGTGATGA+TGG 0.487502 7:-16035413 MsG0780036905.01.T01:CDS
GTGAACCCTGCAGTCACATT+TGG 0.490396 7:-16036330 MsG0780036905.01.T01:CDS
AATGGCCCTGCAACACCTGC+TGG 0.497081 7:-16036432 MsG0780036905.01.T01:CDS
ACATTTGGTGCCTTCATTGG+AGG 0.511728 7:-16036315 MsG0780036905.01.T01:CDS
AATGCAGCTCTAATTGCATC+AGG 0.511913 7:+16038025 None:intergenic
TCAGGTTGACCAGCCTCTCC+AGG 0.514269 7:+16038043 None:intergenic
GTTGGTGCAAATATCTTAGC+TGG 0.517744 7:-16035572 MsG0780036905.01.T01:CDS
CTAGAAATCACTGTTTGAGA+GGG 0.520248 7:+16035382 None:intergenic
AAGGCACCAAATGTGACTGC+AGG 0.524218 7:+16036324 None:intergenic
TGTAATGTTTCCTCCAATGA+AGG 0.525031 7:+16036305 None:intergenic
AATTGTGATGACATTTGGAT+TGG 0.527517 7:-16035675 MsG0780036905.01.T01:CDS
CTTCTTAAGTCCGCTTCTGG+TGG 0.531923 7:-16036222 MsG0780036905.01.T01:CDS
GCAGGCCCAAAAGAAACAGC+TGG 0.539419 7:+16035521 None:intergenic
CATGTCCAACTAACAACAGC+AGG 0.542428 7:+16035503 None:intergenic
TAAGTCCGCTTCTGGTGGAA+TGG 0.553430 7:-16036217 MsG0780036905.01.T01:intron
GATGCAGCTATGAGGCCAGC+AGG 0.554925 7:+16036417 None:intergenic
CATCATTGGGTCTATTGGGT+CGG 0.557396 7:-16035476 MsG0780036905.01.T01:CDS
GAGATAGTGATGCAGCTATG+AGG 0.568245 7:+16036409 None:intergenic
TGAGGCCAGCAGGTGTTGCA+GGG 0.569015 7:+16036427 None:intergenic
TCTAGAAATCACTGTTTGAG+AGG 0.582825 7:+16035381 None:intergenic
GTTGGAGCAAACATCTCTGG+TGG 0.599963 7:-16036357 MsG0780036905.01.T01:CDS
GGTTACCATTCCACCAGAAG+CGG 0.604749 7:+16036212 None:intergenic
CACAGTTTATGCAACAGCAG+TGG 0.610906 7:-16035648 MsG0780036905.01.T01:CDS
TAGAAATCACTGTTTGAGAG+GGG 0.619749 7:+16035383 None:intergenic
TGCAATTGGATCTCCTGGAG+AGG 0.626286 7:-16038056 MsG0780036905.01.T01:CDS
AGGCACCAAATGTGACTGCA+GGG 0.650741 7:+16036325 None:intergenic
ATTCCATACTGATATATCTG+AGG 0.654480 7:+16035712 None:intergenic
GGTGCAAATATCTTAGCTGG+TGG 0.673366 7:-16035569 MsG0780036905.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATTAAATAACAAACAA+AGG - Chr7:16035922-16035941 MsG0780036905.01.T01:intron 15.0%
!! CATTAAAAAAGTAAATAGAA+TGG + Chr7:16035580-16035599 None:intergenic 15.0%
!! TTACTTTCTTGAAATATTAT+CGG + Chr7:16037360-16037379 None:intergenic 15.0%
!! TTAGAAAATAAAATTGGAAA+TGG - Chr7:16036361-16036380 MsG0780036905.01.T01:CDS 15.0%
!! TTCATTTCTCAAATTATTAT+CGG - Chr7:16035744-16035763 MsG0780036905.01.T01:intron 15.0%
!!! ATACTTTCTTGAAATATTTT+CGG + Chr7:16037463-16037482 None:intergenic 15.0%
!!! GCTAAATTTTTTAAACTATA+TGG - Chr7:16036901-16036920 MsG0780036905.01.T01:intron 15.0%
!!! TTTTGAGAAGTATTTTATAT+TGG - Chr7:16037174-16037193 MsG0780036905.01.T01:intron 15.0%
!! AAAAAAGTAAATAGAATGGA+TGG + Chr7:16035576-16035595 None:intergenic 20.0%
!! AAAAAGTAAATAGAATGGAT+GGG + Chr7:16035575-16035594 None:intergenic 20.0%
!! AATGTTATGTAGCAAAAATT+AGG + Chr7:16036327-16036346 None:intergenic 20.0%
!! ATACACTTTCTTTATAATGA+AGG - Chr7:16036046-16036065 MsG0780036905.01.T01:intron 20.0%
!! ATCTATGATAATATCTTCAT+TGG - Chr7:16038033-16038052 MsG0780036905.01.T01:CDS 20.0%
!! ATCTTAATAATGCATCAAAA+TGG + Chr7:16036953-16036972 None:intergenic 20.0%
!! ATTAGACACAAATACAATAT+AGG - Chr7:16037523-16037542 MsG0780036905.01.T01:intron 20.0%
!! GTAGACATCTATAATAATTT+AGG - Chr7:16037584-16037603 MsG0780036905.01.T01:intron 20.0%
!! TAAAAAGTAAATGTTTACGA+TGG + Chr7:16035836-16035855 None:intergenic 20.0%
!!! ATTCCTATATTTCCTTTTTT+TGG + Chr7:16037835-16037854 None:intergenic 20.0%
!!! TTATTTTACAATCACCTTTA+AGG - Chr7:16036418-16036437 MsG0780036905.01.T01:CDS 20.0%
! AAAAGTAAATAGAATGGATG+GGG + Chr7:16035574-16035593 None:intergenic 25.0%
! AGTGACTAAAGTGAAAATAA+AGG + Chr7:16035999-16036018 None:intergenic 25.0%
! GAACTAAAAAATTGTATTGG+AGG - Chr7:16036607-16036626 MsG0780036905.01.T01:intron 25.0%
! GAGGAACTAAAAAATTGTAT+TGG - Chr7:16036604-16036623 MsG0780036905.01.T01:intron 25.0%
! GATCCAAAAAAAGGAAATAT+AGG - Chr7:16037829-16037848 MsG0780036905.01.T01:intron 25.0%
! GTGACTAAAGTGAAAATAAA+GGG + Chr7:16035998-16036017 None:intergenic 25.0%
! TAAAAAATTGTATTGGAGGA+GGG - Chr7:16036611-16036630 MsG0780036905.01.T01:intron 25.0%
! TAATAATGCATCAAAATGGA+TGG + Chr7:16036949-16036968 None:intergenic 25.0%
!! TAAAGAAAGTGTATGAACAT+AGG + Chr7:16036040-16036059 None:intergenic 25.0%
!! TGTGTCAAGTATACTTTTAT+CGG + Chr7:16037559-16037578 None:intergenic 25.0%
!! TTTGAAATTGTGATGACATT+TGG - Chr7:16037775-16037794 MsG0780036905.01.T01:intron 25.0%
!!! TTTACTTTTTACCTATGTTC+CGG - Chr7:16035845-16035864 MsG0780036905.01.T01:intron 25.0%
AAAGAACATAGATGTTCATG+AGG + Chr7:16036183-16036202 None:intergenic 30.0%
AATTGTGATGACATTTGGAT+TGG - Chr7:16037780-16037799 MsG0780036905.01.T01:intron 30.0%
ACAATAACACCAATTGCAAT+TGG + Chr7:16037865-16037884 None:intergenic 30.0%
AGAATGACAGATACAAACAT+TGG - Chr7:16037312-16037331 MsG0780036905.01.T01:intron 30.0%
AGCAAAAACAAAAATGAGCA+TGG + Chr7:16035470-16035489 None:intergenic 30.0%
ATTATTGCTCCAATTGCAAT+TGG - Chr7:16037853-16037872 MsG0780036905.01.T01:intron 30.0%
ATTCCATACTGATATATCTG+AGG + Chr7:16037746-16037765 None:intergenic 30.0%
CTAAAAAATTGTATTGGAGG+AGG - Chr7:16036610-16036629 MsG0780036905.01.T01:intron 30.0%
CTAGTAAAATGACTGATTGT+TGG - Chr7:16036974-16036993 MsG0780036905.01.T01:intron 30.0%
GCTGTTTATCTTTAAACTAG+TGG + Chr7:16036215-16036234 None:intergenic 30.0%
TATCCTCAGATATATCAGTA+TGG - Chr7:16037740-16037759 MsG0780036905.01.T01:intron 30.0%
TGCTTAAAGCTGAAGATTAA+TGG + Chr7:16037267-16037286 None:intergenic 30.0%
TGGAAGAAATAGAGGAAAAT+GGG - Chr7:16036525-16036544 MsG0780036905.01.T01:intron 30.0%
! AAGTGAGTTGTTTAGTTTAG+AGG + Chr7:16035879-16035898 None:intergenic 30.0%
! TTTTGCAAATTGAACATTGC+AGG - Chr7:16037699-16037718 MsG0780036905.01.T01:intron 30.0%
!! AATATCTTCATTGGTGATGA+TGG - Chr7:16038042-16038061 MsG0780036905.01.T01:CDS 30.0%
!! ATTGCAATTGGTGTTATTGT+TGG - Chr7:16037865-16037884 MsG0780036905.01.T01:intron 30.0%
!! ATTTTGACCTTGTAACCTTA+AGG + Chr7:16036853-16036872 None:intergenic 30.0%
!! TGACTGATTGTTGGTTATTT+TGG - Chr7:16036983-16037002 MsG0780036905.01.T01:intron 30.0%
!! TTAATGAAAGATTGACTCGA+TGG - Chr7:16035594-16035613 MsG0780036905.01.T01:CDS 30.0%
!!! ATGCTCATTTTTGTTTTTGC+TGG - Chr7:16035469-16035488 MsG0780036905.01.T01:CDS 30.0%
!!! ATTTTTGTTTTTGCTGGTCA+AGG - Chr7:16035475-16035494 MsG0780036905.01.T01:CDS 30.0%
!!! TTTTTTAGTTCCTCCAAATG+AGG + Chr7:16036598-16036617 None:intergenic 30.0%
AACAAAGCCTTAAGGTTACA+AGG - Chr7:16036843-16036862 MsG0780036905.01.T01:intron 35.0%
AATACAAAACCCTCCTCATT+TGG - Chr7:16036582-16036601 MsG0780036905.01.T01:intron 35.0%
CAAACAAAGGAAGATATCGT+AGG - Chr7:16035935-16035954 MsG0780036905.01.T01:intron 35.0%
CAATTGCTGCACCAATAAAT+GGG + Chr7:16038005-16038024 None:intergenic 35.0%
CTAGAAATCACTGTTTGAGA+GGG + Chr7:16038076-16038095 None:intergenic 35.0%
CTGTGTCAATGCTTCATAAA+TGG - Chr7:16035782-16035801 MsG0780036905.01.T01:intron 35.0%
GAACCAACATTTCAGATTGT+AGG - Chr7:16035628-16035647 MsG0780036905.01.T01:CDS 35.0%
GAGATCCAATTGCAATTCTA+TGG + Chr7:16035393-16035412 None:intergenic 35.0%
GCAATCCATAGAATTGCAAT+TGG - Chr7:16035385-16035404 MsG0780036905.01.T01:CDS 35.0%
GTGGAAGAAATAGAGGAAAA+TGG - Chr7:16036524-16036543 MsG0780036905.01.T01:intron 35.0%
TAGAAATCACTGTTTGAGAG+GGG + Chr7:16038075-16038094 None:intergenic 35.0%
TATTGGATTGCACAGTTACT+TGG - Chr7:16037191-16037210 MsG0780036905.01.T01:intron 35.0%
TGTAATGTTTCCTCCAATGA+AGG + Chr7:16037153-16037172 None:intergenic 35.0%
TTTCACTTTAGTCACTTCAG+AGG - Chr7:16036003-16036022 MsG0780036905.01.T01:intron 35.0%
! GTTGTTTAGTTTAGAGGAAC+CGG + Chr7:16035873-16035892 None:intergenic 35.0%
!! CTATTTGTTGCTGTTTCTGT+TGG - Chr7:16037080-16037099 MsG0780036905.01.T01:intron 35.0%
!! GTAACCTTAAGGCTTTGTTT+GGG + Chr7:16036842-16036861 None:intergenic 35.0%
!! TGTAACCTTAAGGCTTTGTT+TGG + Chr7:16036843-16036862 None:intergenic 35.0%
!!! ATGAATCCAGCTGTTTCTTT+TGG - Chr7:16037928-16037947 MsG0780036905.01.T01:intron 35.0%
!!! TGAATCCAGCTGTTTCTTTT+GGG - Chr7:16037929-16037948 MsG0780036905.01.T01:intron 35.0%
!!! TGATTGTTGGTTATTTTGGC+AGG - Chr7:16036987-16037006 MsG0780036905.01.T01:intron 35.0%
AAACTCGCAAACAAAGCCTA+AGG + Chr7:16036460-16036479 None:intergenic 40.0%
AACTCCCAAACAAAGCCTTA+AGG - Chr7:16036835-16036854 MsG0780036905.01.T01:intron 40.0%
AACTCGCAAACAAAGCCTAA+GGG + Chr7:16036459-16036478 None:intergenic 40.0%
ACAGCAGTGGATCCAAAAAA+AGG - Chr7:16037820-16037839 MsG0780036905.01.T01:intron 40.0%
AGAATTGCAATTGGATCTCC+TGG - Chr7:16035394-16035413 MsG0780036905.01.T01:CDS 40.0%
ATTCTTCTTAAGTCCGCTTC+TGG - Chr7:16037230-16037249 MsG0780036905.01.T01:intron 40.0%
GAAATAGAGGAAAATGGGAG+AGG - Chr7:16036530-16036549 MsG0780036905.01.T01:intron 40.0%
GACTCATCATTGGGTCTATT+GGG - Chr7:16037975-16037994 MsG0780036905.01.T01:CDS 40.0%
GCAATTGCTGCACCAATAAA+TGG + Chr7:16038006-16038025 None:intergenic 40.0%
GCAGGCAAACTTACCAATAA+TGG - Chr7:16037005-16037024 MsG0780036905.01.T01:intron 40.0%
GCATCACTATCTCATGCATT+TGG - Chr7:16037056-16037075 MsG0780036905.01.T01:intron 40.0%
GGATGGGGCAAATTAAGATA+GGG + Chr7:16035559-16035578 None:intergenic 40.0%
GTTGGTGCAAATATCTTAGC+TGG - Chr7:16037883-16037902 MsG0780036905.01.T01:intron 40.0%
TAGACACGACACTGAAACAT+AGG - Chr7:16037435-16037454 MsG0780036905.01.T01:intron 40.0%
TGGATGGGGCAAATTAAGAT+AGG + Chr7:16035560-16035579 None:intergenic 40.0%
TTAGTTCCTCCAAATGAGGA+GGG + Chr7:16036594-16036613 None:intergenic 40.0%
TTGGACATGGACTCATCATT+GGG - Chr7:16037966-16037985 MsG0780036905.01.T01:CDS 40.0%
! AAGGAAAGGAAAGGCTTTGA+GGG + Chr7:16036807-16036826 None:intergenic 40.0%
! AATGCAGCTCTAATTGCATC+AGG + Chr7:16035433-16035452 None:intergenic 40.0%
! ACGCCTACAATCTGAAATGT+TGG + Chr7:16035634-16035653 None:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG - Chr7:16036617-16036636 MsG0780036905.01.T01:intron 40.0%
! CTTTGTTTGGGAGTTTGGAT+GGG + Chr7:16036830-16036849 None:intergenic 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG - Chr7:16036618-16036637 MsG0780036905.01.T01:intron 40.0%
! TTTAGTTCCTCCAAATGAGG+AGG + Chr7:16036595-16036614 None:intergenic 40.0%
! TTTGAGGGGTGCAAAATATG+AGG + Chr7:16036792-16036811 None:intergenic 40.0%
! TTTTACCTATGTTCCGGATC+CGG - Chr7:16035851-16035870 MsG0780036905.01.T01:intron 40.0%
!! GATTGACTCGATGGACATTT+AGG - Chr7:16035603-16035622 MsG0780036905.01.T01:CDS 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG + Chr7:16036835-16036854 None:intergenic 40.0%
!! TTAGGCTTTGTTTGCGAGTT+TGG - Chr7:16036459-16036478 MsG0780036905.01.T01:intron 40.0%
!!! ATTTTAGAACCGTTCCTCAG+GGG - Chr7:16036102-16036121 MsG0780036905.01.T01:intron 40.0%
!!! CATTTTAGAACCGTTCCTCA+GGG - Chr7:16036101-16036120 MsG0780036905.01.T01:intron 40.0%
!!! TCATTTTAGAACCGTTCCTC+AGG - Chr7:16036100-16036119 MsG0780036905.01.T01:intron 40.0%
ACAAAACCCTCCTCATTTGG+AGG - Chr7:16036585-16036604 MsG0780036905.01.T01:intron 45.0%
ACCAAAGTTCAAATCCCCTG+AGG + Chr7:16036119-16036138 None:intergenic 45.0%
AGTTCAAATCCCCTGAGGAA+CGG + Chr7:16036114-16036133 None:intergenic 45.0%
ATAGAGGAAAATGGGAGAGG+AGG - Chr7:16036533-16036552 MsG0780036905.01.T01:intron 45.0%
CACAGTTTATGCAACAGCAG+TGG - Chr7:16037807-16037826 MsG0780036905.01.T01:intron 45.0%
CATCATTGGGTCTATTGGGT+CGG - Chr7:16037979-16037998 MsG0780036905.01.T01:CDS 45.0%
CATGTCCAACTAACAACAGC+AGG + Chr7:16037955-16037974 None:intergenic 45.0%
CGGAGTTCACATCTCCTTAA+AGG + Chr7:16036435-16036454 None:intergenic 45.0%
CTGCTGTTGTTAGTTGGACA+TGG - Chr7:16037953-16037972 MsG0780036905.01.T01:intron 45.0%
GAAGGAAAGGAAAGGCTTTG+AGG + Chr7:16036808-16036827 None:intergenic 45.0%
GAAGGCTTGGGAAAAAAGGA+AGG - Chr7:16036496-16036515 MsG0780036905.01.T01:intron 45.0%
GAGATAGTGATGCAGCTATG+AGG + Chr7:16037049-16037068 None:intergenic 45.0%
GGAAAAAAGGAAGGAGCAAG+TGG - Chr7:16036505-16036524 MsG0780036905.01.T01:intron 45.0%
GGACTCATCATTGGGTCTAT+TGG - Chr7:16037974-16037993 MsG0780036905.01.T01:CDS 45.0%
GGAGCAAGTGGAAGAAATAG+AGG - Chr7:16036517-16036536 MsG0780036905.01.T01:intron 45.0%
GGTGCAAATATCTTAGCTGG+TGG - Chr7:16037886-16037905 MsG0780036905.01.T01:intron 45.0%
GTTGGACATGGACTCATCAT+TGG - Chr7:16037965-16037984 MsG0780036905.01.T01:CDS 45.0%
TAGAGGAAAATGGGAGAGGA+GGG - Chr7:16036534-16036553 MsG0780036905.01.T01:intron 45.0%
TAGTTTAGAGGAACCGGATC+CGG + Chr7:16035867-16035886 None:intergenic 45.0%
TATTGGGTCGGCCCATTTAT+TGG - Chr7:16037991-16038010 MsG0780036905.01.T01:CDS 45.0%
TCCTCAGGGGATTTGAACTT+TGG - Chr7:16036115-16036134 MsG0780036905.01.T01:intron 45.0%
TCTGTTGGAGCAAACATCTC+TGG - Chr7:16037095-16037114 MsG0780036905.01.T01:intron 45.0%
TGGACACGACACTGAAACAT+AGG - Chr7:16037332-16037351 MsG0780036905.01.T01:intron 45.0%
TTGGATGGGAAGGAAAGGAA+AGG + Chr7:16036816-16036835 None:intergenic 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG - Chr7:16036464-16036483 MsG0780036905.01.T01:intron 45.0%
! GTTTTTGCTGGTCAAGGATC+TGG - Chr7:16035481-16035500 MsG0780036905.01.T01:CDS 45.0%
! TGTATTGGAGGAGGGTTTTG+GGG - Chr7:16036619-16036638 MsG0780036905.01.T01:intron 45.0%
! TTAGCTGGTGGAGCATTTGA+TGG - Chr7:16037898-16037917 MsG0780036905.01.T01:intron 45.0%
! TTCATGAGGTGTTTGCTCAG+TGG + Chr7:16036169-16036188 None:intergenic 45.0%
!! ACATTTGGTGCCTTCATTGG+AGG - Chr7:16037140-16037159 MsG0780036905.01.T01:intron 45.0%
!! AGGAAAGGAAAGGCTTTGAG+GGG + Chr7:16036806-16036825 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG - Chr7:16036463-16036482 MsG0780036905.01.T01:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+TGG + Chr7:16036831-16036850 None:intergenic 45.0%
!! GTCACATTTGGTGCCTTCAT+TGG - Chr7:16037137-16037156 MsG0780036905.01.T01:intron 45.0%
!!! TTTTTTTTAGAAAATAAAAT+TGG - Chr7:16036355-16036374 MsG0780036905.01.T01:CDS 5.0%
AAAATGGGAGAGGAGGGCTT+TGG - Chr7:16036540-16036559 MsG0780036905.01.T01:intron 50.0%
AAATGGGAGAGGAGGGCTTT+GGG - Chr7:16036541-16036560 MsG0780036905.01.T01:intron 50.0%
AGATGTGAACTCCGTCCCTT+AGG - Chr7:16036441-16036460 MsG0780036905.01.T01:CDS 50.0%
AGGCACCAAATGTGACTGCA+GGG + Chr7:16037133-16037152 None:intergenic 50.0%
AGGGGAAGGCTTGGGAAAAA+AGG - Chr7:16036492-16036511 MsG0780036905.01.T01:intron 50.0%
CGCAAACAAAGCCTAAGGGA+CGG + Chr7:16036455-16036474 None:intergenic 50.0%
CTTCTTAAGTCCGCTTCTGG+TGG - Chr7:16037233-16037252 MsG0780036905.01.T01:intron 50.0%
GGAGTTTGGATGGGAAGGAA+AGG + Chr7:16036821-16036840 None:intergenic 50.0%
GGTTACCATTCCACCAGAAG+CGG + Chr7:16037246-16037265 None:intergenic 50.0%
GTGAACCCTGCAGTCACATT+TGG - Chr7:16037125-16037144 MsG0780036905.01.T01:intron 50.0%
GTTGGAGCAAACATCTCTGG+TGG - Chr7:16037098-16037117 MsG0780036905.01.T01:intron 50.0%
GTTTGGGAGTTTGGATGGGA+AGG + Chr7:16036826-16036845 None:intergenic 50.0%
TAAGTCCGCTTCTGGTGGAA+TGG - Chr7:16037238-16037257 MsG0780036905.01.T01:intron 50.0%
TGCAATTGGATCTCCTGGAG+AGG - Chr7:16035399-16035418 MsG0780036905.01.T01:CDS 50.0%
TGCGAGTGTCTGACATGTGT+TGG + Chr7:16037655-16037674 None:intergenic 50.0%
TTGGGCCTGCTGTTGTTAGT+TGG - Chr7:16037947-16037966 MsG0780036905.01.T01:intron 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG - Chr7:16036469-16036488 MsG0780036905.01.T01:intron 50.0%
! AAGGCACCAAATGTGACTGC+AGG + Chr7:16037134-16037153 None:intergenic 50.0%
! AGGTGTTGCAGGGCCATTAT+TGG + Chr7:16037021-16037040 None:intergenic 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG - Chr7:16036462-16036481 MsG0780036905.01.T01:intron 50.0%
!! GTATTGGAGGAGGGTTTTGG+GGG - Chr7:16036620-16036639 MsG0780036905.01.T01:intron 50.0%
!!! AGGGTTTTGGGGGGTTTTGA+AGG - Chr7:16036630-16036649 MsG0780036905.01.T01:intron 50.0%
!!! GGGTTTTGGGGGGTTTTGAA+GGG - Chr7:16036631-16036650 MsG0780036905.01.T01:intron 50.0%
!!! TATTGGAGGAGGGTTTTGGG+GGG - Chr7:16036621-16036640 MsG0780036905.01.T01:intron 50.0%
AATGGGAGAGGAGGGCTTTG+GGG - Chr7:16036542-16036561 MsG0780036905.01.T01:intron 55.0%
AGGAACCGGATCCGGAACAT+AGG + Chr7:16035859-16035878 None:intergenic 55.0%
ATTGGATCTCCTGGAGAGGC+TGG - Chr7:16035403-16035422 MsG0780036905.01.T01:CDS 55.0%
GCAGGCCCAAAAGAAACAGC+TGG + Chr7:16037937-16037956 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG - Chr7:16036468-16036487 MsG0780036905.01.T01:intron 55.0%
TGCTGGTCAAGGATCTGGCA+TGG - Chr7:16035486-16035505 MsG0780036905.01.T01:CDS 55.0%
AATGGCCCTGCAACACCTGC+TGG - Chr7:16037023-16037042 MsG0780036905.01.T01:intron 60.0%
CGAGTTTGGAGGGGAAGGGA+GGG - Chr7:16036473-16036492 MsG0780036905.01.T01:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - Chr7:16036474-16036493 MsG0780036905.01.T01:intron 60.0%
GATGCAGCTATGAGGCCAGC+AGG + Chr7:16037041-16037060 None:intergenic 60.0%
! ATGAGGCCAGCAGGTGTTGC+AGG + Chr7:16037032-16037051 None:intergenic 60.0%
! ATGGGAGAGGAGGGCTTTGG+GGG - Chr7:16036543-16036562 MsG0780036905.01.T01:intron 60.0%
! TGAGGCCAGCAGGTGTTGCA+GGG + Chr7:16037031-16037050 None:intergenic 60.0%
!! TCAGGTTGACCAGCCTCTCC+AGG + Chr7:16035415-16035434 None:intergenic 60.0%
GCGAGTTTGGAGGGGAAGGG+AGG - Chr7:16036472-16036491 MsG0780036905.01.T01:intron 65.0%
GGGAAGGGAGGGGAAGGCTT+GGG - Chr7:16036484-16036503 MsG0780036905.01.T01:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+AGG - Chr7:16036478-16036497 MsG0780036905.01.T01:intron 65.0%
!! TGGGAGAGGAGGGCTTTGGG+GGG - Chr7:16036544-16036563 MsG0780036905.01.T01:intron 65.0%
GGGGAAGGGAGGGGAAGGCT+TGG - Chr7:16036483-16036502 MsG0780036905.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 16035382 16038095 16035382 ID=MsG0780036905.01;Name=MsG0780036905.01
Chr7 mRNA 16035382 16038095 16035382 ID=MsG0780036905.01.T01;Parent=MsG0780036905.01;Name=MsG0780036905.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|3|0|252
Chr7 exon 16037963 16038095 16037963 ID=MsG0780036905.01.T01:exon:2665;Parent=MsG0780036905.01.T01
Chr7 exon 16036218 16036468 16036218 ID=MsG0780036905.01.T01:exon:2664;Parent=MsG0780036905.01.T01
Chr7 exon 16035382 16035756 16035382 ID=MsG0780036905.01.T01:exon:2663;Parent=MsG0780036905.01.T01
Chr7 CDS 16037963 16038095 16037963 ID=MsG0780036905.01.T01:cds;Parent=MsG0780036905.01.T01
Chr7 CDS 16036218 16036468 16036218 ID=MsG0780036905.01.T01:cds;Parent=MsG0780036905.01.T01
Chr7 CDS 16035382 16035756 16035382 ID=MsG0780036905.01.T01:cds;Parent=MsG0780036905.01.T01
Gene Sequence

>MsG0780036905.01.T01

ATGGCAATCCATAGAATTGCAATTGGATCTCCTGGAGAGGCTGGTCAACCTGATGCAATTAGAGCTGCATTTGCTGAATTCTTTTCCATGCTCATTTTTGTTTTTGCTGGTCAAGGATCTGGCATGGCTTACAGCAAACTTACCAATAATGGCCCTGCAACACCTGCTGGCCTCATAGCTGCATCACTATCTCATGCATTTGGACTATTTGTTGCTGTTTCTGTTGGAGCAAACATCTCTGGTGGACATGTGAACCCTGCAGTCACATTTGGTGCCTTCATTGGAGGAAACATTACACTTTTGAGAAGTATTTTATATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCTTGCATTCTTCTTAAGTCCGCTTCTGGTGGAATGGAGACATCAGCATTTGCAATATCCTCAGATATATCAGTATGGAATGCACTTCTTTTTGAAATTGTGATGACATTTGGATTGGTATACACAGTTTATGCAACAGCAGTGGATCCAAAAAAAGGAAATATAGGAATTATTGCTCCAATTGCAATTGGTGTTATTGTTGGTGCAAATATCTTAGCTGGTGGAGCATTTGATGGTGCTTCAATGAATCCAGCTGTTTCTTTTGGGCCTGCTGTTGTTAGTTGGACATGGACTCATCATTGGGTCTATTGGGTCGGCCCATTTATTGGTGCAGCAATTGCTGCTATTATCTATGATAATATCTTCATTGGTGATGATGGTCATGAACCCCTCTCAAACAGTGATTTCTAG
Protein sequence

>MsG0780036905.01.T01

MAIHRIAIGSPGEAGQPDAIRAAFAEFFSMLIFVFAGQGSGMAYSKLTNNGPATPAGLIAASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSASGGMETSAFAISSDISVWNALLFEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGVIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTHHWVYWVGPFIGAAIAAIIYDNIFIGDDGHEPLSNSDF*