AlfalfaGEDB | MsG0780037067.01

M. sativa cultivar ZhongmuNo.1 / MsG0780037067.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037067.01.T01	RHN44864.1	87.966	590	28	3	12	601	12	558	0	1033

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037067.01.T01	A0A396GZG6	87.966	590	28	3	12	601	12	558	0.0	1033

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001130.01	MsG0780037067.01	0.808285	3.337966e-50	1.900984e-47
MsG0380017215.01	MsG0780037067.01	0.817419	3.330157e-52	2.424014e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037067.01.T01	MTR_7g026520	87.797	590	25	3	12	601	12	554	0.0	1032

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037067.01.T01	AT3G26950	56.219	603	202	8	1	598	1	546	0.0	655

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Find 150 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAACCCATCTGGGTGC+TGG	0.493529	7:+18869275	None:intergenic
AAAGCAGCAACCTTCATTTG+AGG	0.506093	7:+18871811	None:intergenic
AAAGTCAGATTTCAGAGTAA+GGG	0.596213	7:-18869306	MsG0780037067.01.T01:CDS
AAATAGGTTGGGGACATGTT+TGG	0.347653	7:-18867887	MsG0780037067.01.T01:CDS
AAGAACCAATATGCCTGGTT+TGG	0.448277	7:+18872921	None:intergenic
AAGACTGCCGAGGCAGGTTT+TGG	0.260908	7:-18873013	MsG0780037067.01.T01:CDS
AAGCACTTGTGGAGACTAAA+TGG	0.336894	7:-18872220	MsG0780037067.01.T01:CDS
AAGCAGCAACCTTCATTTGA+GGG	0.482272	7:+18871812	None:intergenic
AAGCATATATGGGAGGAAAC+TGG	0.476925	7:-18872191	MsG0780037067.01.T01:CDS
AATAGCACCGGTTTGGATGT+CGG	0.585669	7:-18874076	MsG0780037067.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAACAACTAGACATGAA+TGG	+	Chr7:18869930-18869949	None:intergenic	30.0%
AAAGTCAGATTTCAGAGTAA+GGG	-	Chr7:18872665-18872684	MsG0780037067.01.T01:intron	30.0%
AATAAGCTGAAAATCGCTTA+TGG	+	Chr7:18868526-18868545	None:intergenic	30.0%
ACATAAAACATGGAAGTAAC+TGG	-	Chr7:18870588-18870607	MsG0780037067.01.T01:intron	30.0%
ACCACCAAACTAAATATACA+AGG	+	Chr7:18869157-18869176	None:intergenic	30.0%
ACTTATGACATTTCCATAAG+CGG	-	Chr7:18868289-18868308	MsG0780037067.01.T01:intron	30.0%
AGGTGTAGGATTATTGATAA+TGG	-	Chr7:18867789-18867808	MsG0780037067.01.T01:CDS	30.0%
ATATGTATTCTACATGTGTC+TGG	+	Chr7:18871478-18871497	None:intergenic	30.0%
ATCAGGGATTAAACTGAAAA+CGG	+	Chr7:18868381-18868400	None:intergenic	30.0%
ATGAGCTTACAAAATTCATG+GGG	+	Chr7:18871086-18871105	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	18867575	18874418	18867575	ID=MsG0780037067.01;Name=MsG0780037067.01
Chr7	mRNA	18867575	18874418	18867575	ID=MsG0780037067.01.T01;Parent=MsG0780037067.01;Name=MsG0780037067.01.T01;_AED=0.41;_eAED=0.42;_QI=143\|0.83\|0.71\|1\|0.83\|0.71\|7\|75\|601
Chr7	exon	18867575	18867996	18867575	ID=MsG0780037067.01.T01:exon:3481;Parent=MsG0780037067.01.T01
Chr7	exon	18869159	18869381	18869159	ID=MsG0780037067.01.T01:exon:3480;Parent=MsG0780037067.01.T01
Chr7	exon	18870163	18870310	18870163	ID=MsG0780037067.01.T01:exon:3479;Parent=MsG0780037067.01.T01
Chr7	exon	18871643	18871888	18871643	ID=MsG0780037067.01.T01:exon:3478;Parent=MsG0780037067.01.T01
Chr7	exon	18872106	18872356	18872106	ID=MsG0780037067.01.T01:exon:3477;Parent=MsG0780037067.01.T01
Chr7	exon	18872862	18873097	18872862	ID=MsG0780037067.01.T01:exon:3476;Parent=MsG0780037067.01.T01
Chr7	exon	18873921	18874418	18873921	ID=MsG0780037067.01.T01:exon:3475;Parent=MsG0780037067.01.T01
Chr7	five_prime_UTR	18874276	18874418	18874276	ID=MsG0780037067.01.T01:five_prime_utr;Parent=MsG0780037067.01.T01
Chr7	CDS	18873921	18874275	18873921	ID=MsG0780037067.01.T01:cds;Parent=MsG0780037067.01.T01
Chr7	CDS	18872862	18873097	18872862	ID=MsG0780037067.01.T01:cds;Parent=MsG0780037067.01.T01
Chr7	CDS	18872106	18872356	18872106	ID=MsG0780037067.01.T01:cds;Parent=MsG0780037067.01.T01
Chr7	CDS	18871643	18871888	18871643	ID=MsG0780037067.01.T01:cds;Parent=MsG0780037067.01.T01
Chr7	CDS	18870163	18870310	18870163	ID=MsG0780037067.01.T01:cds;Parent=MsG0780037067.01.T01
Chr7	CDS	18869159	18869381	18869159	ID=MsG0780037067.01.T01:cds;Parent=MsG0780037067.01.T01
Chr7	CDS	18867650	18867996	18867650	ID=MsG0780037067.01.T01:cds;Parent=MsG0780037067.01.T01
Chr7	three_prime_UTR	18867575	18867649	18867575	ID=MsG0780037067.01.T01:three_prime_utr;Parent=MsG0780037067.01.T01

Gene Sequence

>MsG0780037067.01.T01

ATGAGATATGGAGGTGGAAGAAGGAGAAGAATGTTACTACAACCATTTCTCGTTACGTGTGCAACGATAACAGGTGTAGGATTATTGATAATGGCATTAAGACCGTTAGATCCACGACCAGGAGCAGTAATTGAAGTTGATTACGCTAGAGATTCTGATGAGTTTCTTGATTTTAATAATAGCACCGGTTTGGATGTCGGTGGCGATGAACCACGTCTGACAACAAAGTTCCCGTCACCGACGTCTAGACCGTGTGCCACGGTGGAAGAGATGGGAAAGGATTTTGAAAATGGGTTTGTTGTTAAGGAGACGTTTAGAGTCAGGAGAATTATTGAGCAGCATTTTGTTTTGAATGGTGCTTCAAGAGTCAGGGATTTGCCCCCTGATAAGTTTTGTAGACATGGATTTGTTCTTGGAAAGACTGCCGAGGCAGGTTTTGGGAATGAAATGTACAAGCTTTTATCAGCTGCAGCGCTCAGTATAATGTTAAACCGGTCCTTGATCATTGGCCAAACCAGGCATATTGGTTCTTTCCCAAGCCTTTCTTTTTTCATTTTTATGAACTTAGTTTTCCACCTTTCTTTTATGTTGATCTATTTATCTTTTCATTGTCTCATTATCGTCTTGGTTCTACATTTCAGAAGCAAATATCCTTTTCAGGATTACATTTCTTATGCCAACTTTACCTTTACCATGAAAGAAATAAAGCACTTGTGGAGACTAAATGGTTGTGAAAGCATATATGGGAGGAAACTGGTTATGAGGACTGATGATTTTGAAAAACCAGGTCAATCAAATGTTCTCTGCAGCAATTGGAAGGAGTGGGAACAACCTATCATTTGGTTTCAAGGAACTAATGATGCTGTGGCGTCTCAATTTTTCTTAAAGAATATACACCCTCAAATGAAGGTTGCTGCTTTTGATTTATTTGGTGATCCGCAAGTTCTTGGATCCCAACCGAATGTATTTGGTGAGCTCATGAGAGTTCTCATATCGCCTTCAAAAGAGGTTGAGGCAGCAGTCAATTGGGTTATTGGTGGCGGGGAGAATCCTGATATCTCGTTGCATATGCGGATGCAAACGAACAGGTCCATAAGGGCTTTGCAGGCTGCATTGCGTTGCATCAGAAAAGCCATCAAGAGTCGACATCTAATGTCAAGACCGAAGGTTGTTGTAGTGTCGGATACACCTTCCCTTGCCAAAAGCATTGCACCCAACATAAGTGAATTTGCAGAGGTTGTTCATTTTGATTATGAAAAGTTCAAAGGAAAAATGTATGATGGTTTGCCAAAGTCAGATTTCAGAGTAAGGGACTGGGGTCCAGCACCCAGATGGGTTGCTTTTGTAGATTTTTTTCTTGCATCTCGCGCTAGATATGCCGTTGTTTCCGGAGCACATAGGCGTGTTGGAACCACCTATGCTCAGTTAATTGCTGCCCTGGCTGCAGCAAACAATCTAGGGGACAACATCAACAACACTTCAGGTCCAAGCTTTTCATTTTTAAGCAGTTTCCAAAGTAATCTATTATCAGATGGATTAAAGAATCAAATAGGTTGGGGACATGTTTGGAACAGATATGCAGGACCATTGAGTTGTCATAACCAAAACAATCAATGTGCATTCACTCCACTTCTCCCACCAGGTTGGTGGGATGGTCTTTGGCAATCACCAATTCCAAGAGATATTAAACGTCTTTCTTTCTATGGTGTTCAACTATCTGGTTTTGGTAATGTAGATACTGATTCACTTCAAAATTATTGTAATTCTAGGAAAACTGTTGTCAAAACTGTCACATATAATTTGTAG

Protein sequence

>MsG0780037067.01.T01

MRYGGGRRRRMLLQPFLVTCATITGVGLLIMALRPLDPRPGAVIEVDYARDSDEFLDFNNSTGLDVGGDEPRLTTKFPSPTSRPCATVEEMGKDFENGFVVKETFRVRRIIEQHFVLNGASRVRDLPPDKFCRHGFVLGKTAEAGFGNEMYKLLSAAALSIMLNRSLIIGQTRHIGSFPSLSFFIFMNLVFHLSFMLIYLSFHCLIIVLVLHFRSKYPFQDYISYANFTFTMKEIKHLWRLNGCESIYGRKLVMRTDDFEKPGQSNVLCSNWKEWEQPIIWFQGTNDAVASQFFLKNIHPQMKVAAFDLFGDPQVLGSQPNVFGELMRVLISPSKEVEAAVNWVIGGGENPDISLHMRMQTNRSIRALQAALRCIRKAIKSRHLMSRPKVVVVSDTPSLAKSIAPNISEFAEVVHFDYEKFKGKMYDGLPKSDFRVRDWGPAPRWVAFVDFFLASRARYAVVSGAHRRVGTTYAQLIAALAAANNLGDNINNTSGPSFSFLSSFQSNLLSDGLKNQIGWGHVWNRYAGPLSCHNQNNQCAFTPLLPPGWWDGLWQSPIPRDIKRLSFYGVQLSGFGNVDTDSLQNYCNSRKTVVKTVTYNL*