Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001130.01.T01 | XP_003589656.1 | 97.093 | 172 | 5 | 0 | 8 | 179 | 1 | 172 | 6.60E-117 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001130.01.T01 | Q9S7J9 | 66.864 | 169 | 53 | 2 | 8 | 174 | 1 | 168 | 3.30E-79 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001130.01.T01 | G7I9Z6 | 97.093 | 172 | 5 | 0 | 8 | 179 | 1 | 172 | 3.15e-117 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000483.01 | MsG0180001130.01 | 0.802959 | 4.379359e-49 | 2.173861e-46 |
| MsG0180000977.01 | MsG0180001130.01 | 0.806408 | 8.346149e-50 | 4.526504e-47 |
| MsG0180001130.01 | MsG0180003253.01 | 0.832410 | 9.603124e-56 | 1.072525e-52 |
| MsG0180001130.01 | MsG0180003357.01 | 0.810075 | 1.380234e-50 | 8.241050e-48 |
| MsG0180001130.01 | MsG0180004106.01 | 0.804355 | 2.248255e-49 | 1.156735e-46 |
| MsG0180001130.01 | MsG0180005354.01 | 0.826239 | 3.025498e-54 | 2.821337e-51 |
| MsG0180001130.01 | MsG0180005977.01 | -0.820346 | 7.200435e-53 | 5.682851e-50 |
| MsG0180001130.01 | MsG0180006103.01 | 0.803260 | 3.793977e-49 | 1.897852e-46 |
| MsG0180001130.01 | MsG0180006104.01 | 0.831900 | 1.283988e-55 | 1.412739e-52 |
| MsG0180001130.01 | MsG0280006465.01 | 0.814430 | 1.547191e-51 | 1.037938e-48 |
| MsG0180001130.01 | MsG0280006634.01 | 0.821137 | 4.737518e-53 | 3.822239e-50 |
| MsG0180001130.01 | MsG0280006669.01 | 0.865795 | 4.557318e-65 | 1.501607e-61 |
| MsG0180001130.01 | MsG0280007537.01 | 0.820487 | 6.683439e-53 | 5.295437e-50 |
| MsG0180001130.01 | MsG0280007756.01 | 0.815651 | 8.288754e-52 | 5.748496e-49 |
| MsG0180001130.01 | MsG0280008932.01 | 0.873300 | 1.636312e-67 | 7.065700e-64 |
| MsG0180001130.01 | MsG0280009117.01 | 0.804030 | 2.627118e-49 | 1.340426e-46 |
| MsG0180001130.01 | MsG0280009157.01 | 0.848531 | 5.774856e-60 | 1.063015e-56 |
| MsG0180001130.01 | MsG0280009350.01 | 0.805971 | 1.031841e-49 | 5.534313e-47 |
| MsG0180001130.01 | MsG0280009447.01 | 0.828082 | 1.095691e-54 | 1.077847e-51 |
| MsG0180001130.01 | MsG0280009757.01 | 0.804491 | 2.105847e-49 | 1.087234e-46 |
| MsG0180001130.01 | MsG0280010257.01 | 0.813306 | 2.736623e-51 | 1.780704e-48 |
| MsG0180001130.01 | MsG0280011401.01 | 0.832001 | 1.212462e-55 | 1.337934e-52 |
| MsG0180001130.01 | MsG0380011744.01 | 0.839410 | 1.610883e-57 | 2.222864e-54 |
| MsG0180001130.01 | MsG0380012184.01 | 0.825938 | 3.567876e-54 | 3.298893e-51 |
| MsG0180001130.01 | MsG0380012331.01 | 0.854000 | 1.647142e-61 | 3.626111e-58 |
| MsG0180001130.01 | MsG0380012438.01 | 0.812127 | 4.956464e-51 | 3.125116e-48 |
| MsG0180001130.01 | MsG0380013471.01 | 0.824723 | 6.917197e-54 | 6.178201e-51 |
| MsG0180001130.01 | MsG0380014866.01 | 0.803440 | 3.482102e-49 | 1.749918e-46 |
| MsG0180001130.01 | MsG0380015745.01 | 0.914652 | 1.491344e-84 | 3.746144e-80 |
| MsG0180001130.01 | MsG0380017037.01 | 0.804075 | 2.570691e-49 | 1.313205e-46 |
| MsG0180001130.01 | MsG0380017215.01 | 0.850484 | 1.648746e-60 | 3.234104e-57 |
| MsG0180001130.01 | MsG0380017229.01 | 0.803875 | 2.829636e-49 | 1.438069e-46 |
| MsG0180001130.01 | MsG0480021737.01 | 0.832062 | 1.171358e-55 | 1.294809e-52 |
| MsG0180001130.01 | MsG0480022239.01 | 0.802708 | 4.935647e-49 | 2.434436e-46 |
| MsG0180001130.01 | MsG0480022330.01 | 0.870698 | 1.198892e-66 | 4.707350e-63 |
| MsG0180001130.01 | MsG0480023641.01 | 0.806497 | 7.993347e-50 | 4.345081e-47 |
| MsG0180001130.01 | MsG0480023978.01 | 0.800676 | 1.288979e-48 | 6.038172e-46 |
| MsG0180001130.01 | MsG0580025625.01 | 0.858355 | 8.718877e-63 | 2.218994e-59 |
| MsG0180001130.01 | MsG0580026067.01 | 0.849667 | 2.790505e-60 | 5.329829e-57 |
| MsG0180001130.01 | MsG0580029065.01 | 0.816560 | 5.192587e-52 | 3.691628e-49 |
| MsG0180001130.01 | MsG0680030549.01 | 0.857667 | 1.396021e-62 | 3.472379e-59 |
| MsG0180001130.01 | MsG0680030964.01 | 0.865643 | 5.090015e-65 | 1.668522e-61 |
| MsG0180001130.01 | MsG0680034028.01 | 0.811860 | 5.666524e-51 | 3.546922e-48 |
| MsG0180001130.01 | MsG0680035707.01 | 0.830124 | 3.503152e-55 | 3.657480e-52 |
| MsG0180001130.01 | MsG0780036117.01 | 0.803864 | 2.844651e-49 | 1.445290e-46 |
| MsG0180001130.01 | MsG0780037067.01 | 0.808285 | 3.337966e-50 | 1.900984e-47 |
| MsG0180001130.01 | MsG0780039964.01 | 0.805483 | 1.305951e-49 | 6.917262e-47 |
| MsG0180001130.01 | MsG0780040254.01 | 0.801639 | 8.188230e-49 | 3.930210e-46 |
| MsG0180001130.01 | MsG0780041256.01 | 0.803993 | 2.673944e-49 | 1.363073e-46 |
| MsG0180001130.01 | MsG0780041301.01 | 0.802261 | 6.099912e-49 | 2.974627e-46 |
| MsG0180001130.01 | MsG0880042035.01 | 0.820021 | 8.546564e-53 | 6.685333e-50 |
| MsG0180001130.01 | MsG0880045617.01 | 0.820477 | 6.720437e-53 | 5.323182e-50 |
| MsG0180001130.01 | MsG0880046300.01 | 0.802182 | 6.332873e-49 | 3.081942e-46 |
| MsG0180001130.01 | MsG0880047152.01 | 0.837036 | 6.585530e-57 | 8.450149e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001130.01.T01 | MTR_1g031650 | 97.093 | 172 | 5 | 0 | 8 | 179 | 1 | 172 | 7.99e-121 | 338 |
| MsG0180001130.01.T01 | MTR_1g031650 | 96.269 | 134 | 5 | 0 | 46 | 179 | 2 | 135 | 3.78e-92 | 265 |
| MsG0180001130.01.T01 | MTR_4g084280 | 65.644 | 163 | 55 | 1 | 11 | 173 | 3 | 164 | 4.98e-76 | 225 |
| MsG0180001130.01.T01 | MTR_3g067585 | 62.346 | 162 | 60 | 1 | 11 | 172 | 3 | 163 | 1.56e-73 | 218 |
| MsG0180001130.01.T01 | MTR_8g107340 | 55.866 | 179 | 72 | 2 | 2 | 174 | 4 | 181 | 1.00e-70 | 212 |
| MsG0180001130.01.T01 | MTR_2g011590 | 58.537 | 164 | 67 | 1 | 11 | 174 | 2 | 164 | 1.28e-69 | 209 |
| MsG0180001130.01.T01 | MTR_6g069470 | 55.488 | 164 | 72 | 1 | 11 | 174 | 15 | 177 | 2.58e-64 | 196 |
| MsG0180001130.01.T01 | MTR_8g088320 | 44.937 | 158 | 85 | 2 | 12 | 168 | 164 | 320 | 2.42e-37 | 131 |
| MsG0180001130.01.T01 | MTR_8g038400 | 42.949 | 156 | 87 | 2 | 12 | 166 | 209 | 363 | 4.71e-37 | 131 |
| MsG0180001130.01.T01 | MTR_3g017500 | 43.226 | 155 | 86 | 2 | 13 | 166 | 213 | 366 | 1.90e-34 | 124 |
| MsG0180001130.01.T01 | MTR_3g017500 | 42.949 | 156 | 87 | 2 | 12 | 166 | 242 | 396 | 5.14e-34 | 124 |
| MsG0180001130.01.T01 | MTR_2g030230 | 42.405 | 158 | 89 | 2 | 12 | 168 | 171 | 327 | 8.19e-34 | 122 |
| MsG0180001130.01.T01 | MTR_2g027100 | 42.282 | 149 | 83 | 2 | 13 | 159 | 5 | 152 | 2.11e-30 | 109 |
| MsG0180001130.01.T01 | MTR_2g027360 | 34.118 | 85 | 54 | 2 | 16 | 99 | 3 | 86 | 6.24e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001130.01.T01 | AT1G70790 | 66.864 | 169 | 53 | 2 | 8 | 174 | 1 | 168 | 3.36e-80 | 236 |
| MsG0180001130.01.T01 | AT1G70790 | 66.864 | 169 | 53 | 2 | 8 | 174 | 1 | 168 | 3.36e-80 | 236 |
| MsG0180001130.01.T01 | AT1G70790 | 66.864 | 169 | 53 | 2 | 8 | 174 | 1 | 168 | 3.36e-80 | 236 |
| MsG0180001130.01.T01 | AT2G01540 | 60.355 | 169 | 64 | 2 | 8 | 174 | 1 | 168 | 1.26e-71 | 214 |
| MsG0180001130.01.T01 | AT1G70810 | 60.736 | 163 | 63 | 1 | 12 | 174 | 4 | 165 | 7.45e-70 | 209 |
| MsG0180001130.01.T01 | AT3G17980 | 56.364 | 165 | 71 | 1 | 10 | 174 | 14 | 177 | 2.02e-68 | 206 |
| MsG0180001130.01.T01 | AT1G48590 | 56.970 | 165 | 69 | 2 | 10 | 174 | 7 | 169 | 9.95e-67 | 201 |
| MsG0180001130.01.T01 | AT1G48590 | 56.970 | 165 | 69 | 2 | 10 | 174 | 7 | 169 | 9.95e-67 | 201 |
| MsG0180001130.01.T01 | AT1G48590 | 56.970 | 165 | 69 | 2 | 10 | 174 | 38 | 200 | 1.08e-66 | 202 |
| MsG0180001130.01.T01 | AT1G73580 | 54.545 | 165 | 74 | 1 | 10 | 174 | 5 | 168 | 6.75e-66 | 199 |
| MsG0180001130.01.T01 | AT1G23140 | 56.707 | 164 | 70 | 1 | 11 | 174 | 3 | 165 | 9.26e-64 | 194 |
| MsG0180001130.01.T01 | AT1G70790 | 70.769 | 130 | 36 | 1 | 47 | 174 | 2 | 131 | 2.01e-63 | 192 |
| MsG0180001130.01.T01 | AT1G66360 | 53.374 | 163 | 73 | 2 | 11 | 171 | 3 | 164 | 4.87e-62 | 190 |
| MsG0180001130.01.T01 | AT5G37740 | 51.497 | 167 | 77 | 2 | 11 | 174 | 3 | 168 | 1.09e-61 | 189 |
| MsG0180001130.01.T01 | AT1G70800 | 53.374 | 163 | 75 | 1 | 12 | 174 | 13 | 174 | 1.70e-60 | 186 |
| MsG0180001130.01.T01 | AT5G37740 | 48.295 | 176 | 79 | 2 | 11 | 174 | 3 | 178 | 5.33e-59 | 182 |
| MsG0180001130.01.T01 | AT1G48590 | 44.848 | 165 | 57 | 2 | 10 | 174 | 38 | 168 | 2.40e-46 | 150 |
| MsG0180001130.01.T01 | AT4G05330 | 47.436 | 156 | 80 | 2 | 12 | 166 | 143 | 297 | 8.24e-39 | 134 |
| MsG0180001130.01.T01 | AT4G21160 | 48.077 | 156 | 79 | 2 | 12 | 166 | 179 | 333 | 2.84e-38 | 134 |
| MsG0180001130.01.T01 | AT4G21160 | 48.077 | 156 | 79 | 2 | 12 | 166 | 179 | 333 | 2.84e-38 | 134 |
| MsG0180001130.01.T01 | AT4G21160 | 48.077 | 156 | 79 | 2 | 12 | 166 | 179 | 333 | 2.84e-38 | 134 |
| MsG0180001130.01.T01 | AT4G21160 | 48.077 | 156 | 79 | 2 | 12 | 166 | 179 | 333 | 2.84e-38 | 134 |
| MsG0180001130.01.T01 | AT4G05330 | 47.436 | 156 | 80 | 2 | 12 | 166 | 178 | 332 | 3.34e-38 | 134 |
| MsG0180001130.01.T01 | AT4G05330 | 47.436 | 156 | 80 | 2 | 12 | 166 | 178 | 332 | 3.34e-38 | 134 |
| MsG0180001130.01.T01 | AT3G07940 | 42.484 | 153 | 86 | 2 | 13 | 164 | 228 | 379 | 3.88e-35 | 127 |
| MsG0180001130.01.T01 | AT5G47710 | 40.625 | 160 | 92 | 2 | 13 | 170 | 5 | 163 | 4.63e-35 | 121 |
| MsG0180001130.01.T01 | AT5G47710 | 40.625 | 160 | 92 | 2 | 13 | 170 | 5 | 163 | 4.63e-35 | 121 |
| MsG0180001130.01.T01 | AT5G47710 | 40.625 | 160 | 92 | 2 | 13 | 170 | 5 | 163 | 4.63e-35 | 121 |
| MsG0180001130.01.T01 | AT5G47710 | 40.625 | 160 | 92 | 2 | 13 | 170 | 5 | 163 | 4.63e-35 | 121 |
Find 46 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACTTTATATAATAATTT+AGG | 0.187365 | 1:+16364310 | None:intergenic |
| CCAGGTTGCAAAGGTCTATT+AGG | 0.188697 | 1:-16364434 | MsG0180001130.01.T01:CDS |
| ATCCGTTTGGCAAGTCATTT+TGG | 0.197413 | 1:-16366262 | None:intergenic |
| CTGAAGAGAGCAGTTGTATT+TGG | 0.198293 | 1:-16364547 | MsG0180001130.01.T01:CDS |
| TTTCTCCGTCGACGACAAAA+TGG | 0.198849 | 1:-16364684 | MsG0180001130.01.T01:CDS |
| AAGAATTAACCCTTTCAATA+AGG | 0.243737 | 1:-16365055 | MsG0180001130.01.T01:CDS |
| TCAATCTTAGAATCATTTCT+TGG | 0.308077 | 1:+16364507 | None:intergenic |
| ATTTGTACACATTGAGCATA+TGG | 0.352534 | 1:+16364638 | None:intergenic |
| AGAATTAACCCTTTCAATAA+GGG | 0.363219 | 1:-16365054 | MsG0180001130.01.T01:CDS |
| ATTGAGTGGGTGGATGTTCC+AGG | 0.378200 | 1:-16364452 | MsG0180001130.01.T01:CDS |
| GGCATGGATAATAATGTTCT+TGG | 0.394699 | 1:-16366238 | MsG0180001130.01.T01:CDS |
| CTCTTGATTGCACAACCATT+TGG | 0.400401 | 1:+16364599 | None:intergenic |
| TCAAGAGGGTTCAAGCAAAT+AGG | 0.403301 | 1:-16364583 | MsG0180001130.01.T01:CDS |
| TTCTCCGTCGACGACAAAAT+GGG | 0.428457 | 1:-16364683 | MsG0180001130.01.T01:CDS |
| CTAAAACTTCGTATTAAAAG+AGG | 0.428755 | 1:-16366211 | MsG0180001130.01.T01:CDS |
| TGTCAACATTGGTCATGAAC+AGG | 0.430334 | 1:-16366140 | MsG0180001130.01.T01:intron |
| AAATGTTGAGAGTGGAGAAT+TGG | 0.430897 | 1:-16364483 | MsG0180001130.01.T01:CDS |
| CCAATGTTGACAACAACATA+AGG | 0.434516 | 1:+16366151 | None:intergenic |
| CAGGTTGCAAAGGTCTATTA+GGG | 0.446108 | 1:-16364433 | MsG0180001130.01.T01:CDS |
| AAATGTGATGTAATATATAG+TGG | 0.446651 | 1:-16364248 | MsG0180001130.01.T01:three_prime_UTR |
| CTCTTACATCCCTTATTGAA+AGG | 0.451223 | 1:+16365045 | None:intergenic |
| TAGTCGTTTGATTCATGCAT+TGG | 0.478458 | 1:+16364346 | None:intergenic |
| ATCTTAGAATCATTTCTTGG+AGG | 0.484585 | 1:+16364510 | None:intergenic |
| CCTAATAGACCTTTGCAACC+TGG | 0.491322 | 1:+16364434 | None:intergenic |
| TCTTACATCCCTTATTGAAA+GGG | 0.497303 | 1:+16365046 | None:intergenic |
| TGTAAGAGTTCCAATACGTC+TGG | 0.504818 | 1:-16365030 | MsG0180001130.01.T01:intron |
| GTTAATTCTTCATTCCACTC+AGG | 0.513309 | 1:+16365068 | None:intergenic |
| AAGTTGGATACTCTTCCAAA+TGG | 0.514104 | 1:-16364614 | MsG0180001130.01.T01:CDS |
| TTAATTCTTCATTCCACTCA+GGG | 0.514723 | 1:+16365069 | None:intergenic |
| CCTTATGTTGTTGTCAACAT+TGG | 0.522538 | 1:-16366151 | MsG0180001130.01.T01:CDS |
| CAATGTTGACAACAACATAA+GGG | 0.538879 | 1:+16366152 | None:intergenic |
| AGATTGAGAAATGTTGAGAG+TGG | 0.545029 | 1:-16364491 | MsG0180001130.01.T01:CDS |
| TGAGAGTGGAGAATTGGTTG+TGG | 0.553380 | 1:-16364477 | MsG0180001130.01.T01:CDS |
| TTGATTCATGCATTGGACCT+CGG | 0.559027 | 1:+16364353 | None:intergenic |
| GTGGATGTTCCAGGTTGCAA+AGG | 0.560781 | 1:-16364443 | MsG0180001130.01.T01:CDS |
| GACAACAACATAAGGGTCGC+TGG | 0.561798 | 1:+16366159 | None:intergenic |
| CAAATGGTTGTGCAATCAAG+AGG | 0.565429 | 1:-16364598 | MsG0180001130.01.T01:CDS |
| TCAATGTGTACAAATGAAGT+TGG | 0.578075 | 1:-16364630 | MsG0180001130.01.T01:CDS |
| AAAACAATTGCAACCCTGAG+TGG | 0.600340 | 1:-16365082 | MsG0180001130.01.T01:CDS |
| AATTGGTTGTGGAAATTGAG+TGG | 0.610176 | 1:-16364466 | MsG0180001130.01.T01:CDS |
| GGTTGTGGAAATTGAGTGGG+TGG | 0.614075 | 1:-16364462 | MsG0180001130.01.T01:CDS |
| ATTGGTTGTGGAAATTGAGT+GGG | 0.621207 | 1:-16364465 | MsG0180001130.01.T01:CDS |
| AAATGGTTGTGCAATCAAGA+GGG | 0.626231 | 1:-16364597 | MsG0180001130.01.T01:CDS |
| TACAACTGCTCTCTTCAGCA+AGG | 0.655573 | 1:+16364552 | None:intergenic |
| AAGTCTTATTGTAATATCCG+AGG | 0.666252 | 1:-16364370 | MsG0180001130.01.T01:three_prime_UTR |
| AGGTTGCAAAGGTCTATTAG+GGG | 0.692342 | 1:-16364432 | MsG0180001130.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAGAAATTATTATTAA+CGG | - | Chr1:16365575-16365594 | MsG0180001130.01.T01:intron | 10.0% |
| !! | ACAACTTTATATAATAATTT+AGG | + | Chr1:16366136-16366155 | None:intergenic | 10.0% |
| !!! | TTTTAAGTTAAAATCAATTA+CGG | - | Chr1:16365199-16365218 | MsG0180001130.01.T01:intron | 10.0% |
| !! | ACAATTCAAATGTATAAAAA+AGG | + | Chr1:16365009-16365028 | None:intergenic | 15.0% |
| !! | CAATTCAAATGTATAAAAAA+GGG | + | Chr1:16365008-16365027 | None:intergenic | 15.0% |
| !!! | AACAAAAAATTATTTTTACG+AGG | - | Chr1:16364934-16364953 | MsG0180001130.01.T01:intron | 15.0% |
| !! | AAATGTGATGTAATATATAG+TGG | - | Chr1:16366195-16366214 | MsG0180001130.01.T01:CDS | 20.0% |
| !! | GTTATGCAAAATTATGTTAT+TGG | - | Chr1:16364592-16364611 | MsG0180001130.01.T01:CDS | 20.0% |
| !! | TAAACTGAACAATAAATTTG+AGG | - | Chr1:16365132-16365151 | MsG0180001130.01.T01:intron | 20.0% |
| !!! | AATTCTTTTGACAAAATTAC+CGG | + | Chr1:16364477-16364496 | None:intergenic | 20.0% |
| !!! | AATTTTTTGTTTTTAGACTC+AGG | + | Chr1:16364925-16364944 | None:intergenic | 20.0% |
| !!! | ACTTAACTTTGTAATTTTCA+AGG | + | Chr1:16365657-16365676 | None:intergenic | 20.0% |
| !!! | ATACTATGAATTGATTTTAC+AGG | - | Chr1:16364853-16364872 | MsG0180001130.01.T01:intron | 20.0% |
| !!! | TGTGTTTTATAATTGAAGTT+TGG | - | Chr1:16365028-16365047 | MsG0180001130.01.T01:intron | 20.0% |
| ! | AAGAATTAACCCTTTCAATA+AGG | - | Chr1:16365388-16365407 | MsG0180001130.01.T01:intron | 25.0% |
| ! | AGAATTAACCCTTTCAATAA+GGG | - | Chr1:16365389-16365408 | MsG0180001130.01.T01:intron | 25.0% |
| ! | ATCTGTATTGAATTTACTCT+TGG | + | Chr1:16364701-16364720 | None:intergenic | 25.0% |
| ! | CTAAAACTTCGTATTAAAAG+AGG | - | Chr1:16364232-16364251 | MsG0180001130.01.T01:three_prime_UTR | 25.0% |
| ! | TCAATCTTAGAATCATTTCT+TGG | + | Chr1:16365939-16365958 | None:intergenic | 25.0% |
| ! | TGGTTATGCAATAACAAAAA+TGG | - | Chr1:16365083-16365102 | MsG0180001130.01.T01:CDS | 25.0% |
| !! | AATTTACAACCTTTCGTTTT+TGG | + | Chr1:16364901-16364920 | None:intergenic | 25.0% |
| !! | ATCATTTTACAACCATTTTG+TGG | - | Chr1:16365611-16365630 | MsG0180001130.01.T01:intron | 25.0% |
| !! | ATTCTTTTGACAAAATTACC+GGG | + | Chr1:16364476-16364495 | None:intergenic | 25.0% |
| !! | GTTTTATAATTGAAGTTTGG+TGG | - | Chr1:16365031-16365050 | MsG0180001130.01.T01:CDS | 25.0% |
| !! | TTTGCAAATATCAAGAGTTT+TGG | + | Chr1:16364967-16364986 | None:intergenic | 25.0% |
| AGAGAAAAATAGAGAAAGCA+AGG | + | Chr1:16364335-16364354 | None:intergenic | 30.0% | |
| AGCAGTTGTATTTGGAAAAA+TGG | - | Chr1:16365904-16365923 | MsG0180001130.01.T01:intron | 30.0% | |
| AGTTACCATTTACAAAGCAA+AGG | + | Chr1:16364671-16364690 | None:intergenic | 30.0% | |
| ATATCCAAAACCTTATGGTA+TGG | - | Chr1:16364635-16364654 | MsG0180001130.01.T01:CDS | 30.0% | |
| ATCTTAGAATCATTTCTTGG+AGG | + | Chr1:16365936-16365955 | None:intergenic | 30.0% | |
| ATTTGTACACATTGAGCATA+TGG | + | Chr1:16365808-16365827 | None:intergenic | 30.0% | |
| CAATGTTGACAACAACATAA+GGG | + | Chr1:16364294-16364313 | None:intergenic | 30.0% | |
| TAGGAATATCCAAAACCTTA+TGG | - | Chr1:16364630-16364649 | MsG0180001130.01.T01:CDS | 30.0% | |
| TCAATGTGTACAAATGAAGT+TGG | - | Chr1:16365813-16365832 | MsG0180001130.01.T01:intron | 30.0% | |
| TCTTACATCCCTTATTGAAA+GGG | + | Chr1:16365400-16365419 | None:intergenic | 30.0% | |
| TTAATTCTTCATTCCACTCA+GGG | + | Chr1:16365377-16365396 | None:intergenic | 30.0% | |
| ! | AATCTGAAATCTCCACAAAA+TGG | + | Chr1:16365626-16365645 | None:intergenic | 30.0% |
| ! | CTTTTCCTTTGCTTTGTAAA+TGG | - | Chr1:16364663-16364682 | MsG0180001130.01.T01:CDS | 30.0% |
| ! | TTGGTGATATTGTTAAGAGT+AGG | - | Chr1:16364611-16364630 | MsG0180001130.01.T01:CDS | 30.0% |
| ! | TTGTCATCACATATTCCTTT+TGG | - | Chr1:16364734-16364753 | MsG0180001130.01.T01:intron | 30.0% |
| !! | AAGTCTTATTGTAATATCCG+AGG | - | Chr1:16366073-16366092 | MsG0180001130.01.T01:intron | 30.0% |
| !! | CATTTTAGTCACCATTTTGA+GGG | - | Chr1:16364819-16364838 | MsG0180001130.01.T01:intron | 30.0% |
| !! | GCTTTCTCTATTTTTCTCTA+AGG | - | Chr1:16364336-16364355 | MsG0180001130.01.T01:three_prime_UTR | 30.0% |
| !! | TCATTTTAGTCACCATTTTG+AGG | - | Chr1:16364818-16364837 | MsG0180001130.01.T01:intron | 30.0% |
| !! | TTGATTTTAGTCCCTCAAAA+TGG | + | Chr1:16364833-16364852 | None:intergenic | 30.0% |
| AAAAGCTGAACCATACCATA+AGG | + | Chr1:16364648-16364667 | None:intergenic | 35.0% | |
| AAATGGTTGTGCAATCAAGA+GGG | - | Chr1:16365846-16365865 | MsG0180001130.01.T01:intron | 35.0% | |
| AAATGTTGAGAGTGGAGAAT+TGG | - | Chr1:16365960-16365979 | MsG0180001130.01.T01:intron | 35.0% | |
| AAGTTGGATACTCTTCCAAA+TGG | - | Chr1:16365829-16365848 | MsG0180001130.01.T01:intron | 35.0% | |
| AATTGGTTGTGGAAATTGAG+TGG | - | Chr1:16365977-16365996 | MsG0180001130.01.T01:intron | 35.0% | |
| AGATTGAGAAATGTTGAGAG+TGG | - | Chr1:16365952-16365971 | MsG0180001130.01.T01:intron | 35.0% | |
| ATTGGTTGTGGAAATTGAGT+GGG | - | Chr1:16365978-16365997 | MsG0180001130.01.T01:intron | 35.0% | |
| CCAATGTTGACAACAACATA+AGG | + | Chr1:16364295-16364314 | None:intergenic | 35.0% | |
| CCTTATGTTGTTGTCAACAT+TGG | - | Chr1:16364292-16364311 | MsG0180001130.01.T01:three_prime_UTR | 35.0% | |
| CTCTTACATCCCTTATTGAA+AGG | + | Chr1:16365401-16365420 | None:intergenic | 35.0% | |
| GAACAAAGACCAAAAACGAA+AGG | - | Chr1:16364889-16364908 | MsG0180001130.01.T01:intron | 35.0% | |
| GGCATGGATAATAATGTTCT+TGG | - | Chr1:16364205-16364224 | MsG0180001130.01.T01:three_prime_UTR | 35.0% | |
| GTAATGCATGCTAAGTTAGA+TGG | + | Chr1:16365454-16365473 | None:intergenic | 35.0% | |
| GTTAATTCTTCATTCCACTC+AGG | + | Chr1:16365378-16365397 | None:intergenic | 35.0% | |
| TAATGGTTCGTATGTGTGTT+TGG | - | Chr1:16365063-16365082 | MsG0180001130.01.T01:CDS | 35.0% | |
| TAGTCGTTTGATTCATGCAT+TGG | + | Chr1:16366100-16366119 | None:intergenic | 35.0% | |
| TCATGATTCCGTCAAAATCA+CGG | - | Chr1:16364530-16364549 | MsG0180001130.01.T01:CDS | 35.0% | |
| ! | GTTTTACTTACCAGACGTAT+TGG | + | Chr1:16365426-16365445 | None:intergenic | 35.0% |
| ! | TAAAAACCCCGTGATTTTGA+CGG | + | Chr1:16364541-16364560 | None:intergenic | 35.0% |
| ! | TGAACCATACCATAAGGTTT+TGG | + | Chr1:16364642-16364661 | None:intergenic | 35.0% |
| !! | CACATATTCCTTTTGGTCTT+TGG | - | Chr1:16364741-16364760 | MsG0180001130.01.T01:intron | 35.0% |
| !! | TTTTTGTTTCTTTCCGCAGA+CGG | - | Chr1:16365720-16365739 | MsG0180001130.01.T01:intron | 35.0% |
| AAAACAATTGCAACCCTGAG+TGG | - | Chr1:16365361-16365380 | MsG0180001130.01.T01:intron | 40.0% | |
| AGGTTGCAAAGGTCTATTAG+GGG | - | Chr1:16366011-16366030 | MsG0180001130.01.T01:intron | 40.0% | |
| ATGATTCCGTCAAAATCACG+GGG | - | Chr1:16364532-16364551 | MsG0180001130.01.T01:CDS | 40.0% | |
| CAAATGGTTGTGCAATCAAG+AGG | - | Chr1:16365845-16365864 | MsG0180001130.01.T01:intron | 40.0% | |
| CAGGTTGCAAAGGTCTATTA+GGG | - | Chr1:16366010-16366029 | MsG0180001130.01.T01:intron | 40.0% | |
| CATGATTCCGTCAAAATCAC+GGG | - | Chr1:16364531-16364550 | MsG0180001130.01.T01:CDS | 40.0% | |
| CTCTTGATTGCACAACCATT+TGG | + | Chr1:16365847-16365866 | None:intergenic | 40.0% | |
| CTGAAGAGAGCAGTTGTATT+TGG | - | Chr1:16365896-16365915 | MsG0180001130.01.T01:intron | 40.0% | |
| TCAAGAGGGTTCAAGCAAAT+AGG | - | Chr1:16365860-16365879 | MsG0180001130.01.T01:intron | 40.0% | |
| TCTTTGTCAAAAACCGTCTG+CGG | + | Chr1:16365736-16365755 | None:intergenic | 40.0% | |
| TGTAAGAGTTCCAATACGTC+TGG | - | Chr1:16365413-16365432 | MsG0180001130.01.T01:intron | 40.0% | |
| TGTCAACATTGGTCATGAAC+AGG | - | Chr1:16364303-16364322 | MsG0180001130.01.T01:three_prime_UTR | 40.0% | |
| TTGATTCATGCATTGGACCT+CGG | + | Chr1:16366093-16366112 | None:intergenic | 40.0% | |
| ! | TTTGGTGGCAACACACATAA+TGG | - | Chr1:16365046-16365065 | MsG0180001130.01.T01:CDS | 40.0% |
| ACAGAACGCCAAAGACCAAA+AGG | + | Chr1:16364752-16364771 | None:intergenic | 45.0% | |
| CCAGGTTGCAAAGGTCTATT+AGG | - | Chr1:16366009-16366028 | MsG0180001130.01.T01:intron | 45.0% | |
| CCTAATAGACCTTTGCAACC+TGG | + | Chr1:16366012-16366031 | None:intergenic | 45.0% | |
| TACAACTGCTCTCTTCAGCA+AGG | + | Chr1:16365894-16365913 | None:intergenic | 45.0% | |
| TGAGAGTGGAGAATTGGTTG+TGG | - | Chr1:16365966-16365985 | MsG0180001130.01.T01:intron | 45.0% | |
| TTCTCCGTCGACGACAAAAT+GGG | - | Chr1:16365760-16365779 | MsG0180001130.01.T01:intron | 45.0% | |
| TTTCTCCGTCGACGACAAAA+TGG | - | Chr1:16365759-16365778 | MsG0180001130.01.T01:intron | 45.0% | |
| ! | ATCACCCATTTTGTCGTCGA+CGG | + | Chr1:16365767-16365786 | None:intergenic | 45.0% |
| ATTGAGTGGGTGGATGTTCC+AGG | - | Chr1:16365991-16366010 | MsG0180001130.01.T01:intron | 50.0% | |
| GACAACAACATAAGGGTCGC+TGG | + | Chr1:16364287-16364306 | None:intergenic | 50.0% | |
| GGTTGTGGAAATTGAGTGGG+TGG | - | Chr1:16365981-16366000 | MsG0180001130.01.T01:intron | 50.0% | |
| GTGGATGTTCCAGGTTGCAA+AGG | - | Chr1:16366000-16366019 | MsG0180001130.01.T01:intron | 50.0% | |
| TTGCAGAATCATCGTGTGCC+CGG | - | Chr1:16364455-16364474 | MsG0180001130.01.T01:CDS | 50.0% | |
| !! | GGCAAGTCATTTTGGAGGCA+TGG | - | Chr1:16364189-16364208 | MsG0180001130.01.T01:three_prime_UTR | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 16364187 | 16366278 | 16364187 | ID=MsG0180001130.01;Name=MsG0180001130.01 |
| Chr1 | mRNA | 16364187 | 16366278 | 16364187 | ID=MsG0180001130.01.T01;Parent=MsG0180001130.01;Name=MsG0180001130.01.T01;_AED=0.50;_eAED=0.50;_QI=0|1|0.66|1|1|1|3|234|179 |
| Chr1 | exon | 16364187 | 16364726 | 16364187 | ID=MsG0180001130.01.T01:exon:31375;Parent=MsG0180001130.01.T01 |
| Chr1 | exon | 16365031 | 16365126 | 16365031 | ID=MsG0180001130.01.T01:exon:31374;Parent=MsG0180001130.01.T01 |
| Chr1 | exon | 16366141 | 16366278 | 16366141 | ID=MsG0180001130.01.T01:exon:31373;Parent=MsG0180001130.01.T01 |
| Chr1 | CDS | 16366141 | 16366278 | 16366141 | ID=MsG0180001130.01.T01:cds;Parent=MsG0180001130.01.T01 |
| Chr1 | CDS | 16365031 | 16365126 | 16365031 | ID=MsG0180001130.01.T01:cds;Parent=MsG0180001130.01.T01 |
| Chr1 | CDS | 16364421 | 16364726 | 16364421 | ID=MsG0180001130.01.T01:cds;Parent=MsG0180001130.01.T01 |
| Chr1 | three_prime_UTR | 16364187 | 16364420 | 16364187 | ID=MsG0180001130.01.T01:three_prime_utr;Parent=MsG0180001130.01.T01 |
| Gene Sequence |
| Protein sequence |
