AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038389.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038389.01.T01 MTR_7g053220 97.115 104 2 1 12 114 100 203 1.77e-68 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038389.01.T01 AT5G48545 65.625 96 29 2 3 95 91 185 3.63e-37 125
MsG0780038389.01.T01 AT5G48545 70.588 51 12 1 5 52 93 143 4.42e-17 72.0

Find 53 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCATTTATTGAGTTTC+AGG 0.118332 7:-45655482 None:intergenic
AATCTTCATTCTTACTTTCT+TGG 0.136622 7:-45655363 None:intergenic
CCCGACCCGTTTCACTTATT+CGG 0.272018 7:+45651226 MsG0780038389.01.T01:five_prime_UTR
CCTCGTTGCTTCTTCTTCAA+TGG 0.291301 7:-45651171 None:intergenic
ACAAGCAATCATACGCTTTA+CGG 0.303782 7:-45655148 None:intergenic
ACAATTGTTATTATCATTAT+CGG 0.319384 7:-45651288 None:intergenic
TCTTCAATGGACATCTTTGT+TGG 0.320112 7:-45651158 None:intergenic
CTTCAATGGACATCTTTGTT+GGG 0.344856 7:-45651157 None:intergenic
CAAGCAATCATACGCTTTAC+GGG 0.359785 7:-45655147 None:intergenic
ATGATGTATGCACAAAATAT+TGG 0.360144 7:-45655585 None:intergenic
TTCTCATCGTCTAAATTAAG+TGG 0.402095 7:-45655286 None:intergenic
GCAACGACCACTTCACGCTT+TGG 0.404258 7:-45651086 None:intergenic
TGACACGTGCCTATGCATAT+TGG 0.417310 7:+45652401 MsG0780038389.01.T01:exon
CCGAATAAGTGAAACGGGTC+GGG 0.420785 7:-45651226 None:intergenic
GTTATTATCATTATCGGAAT+CGG 0.429563 7:-45651282 None:intergenic
CATGATTGCATTGCTAATGA+AGG 0.431158 7:-45654527 None:intergenic
CATTCATTTATTGAGTTTCA+GGG 0.441017 7:-45655481 None:intergenic
TTCAACGTGTTAATTAATAA+CGG 0.453375 7:+45654968 MsG0780038389.01.T01:CDS
AAACTCAATAAATGAATGGT+TGG 0.458008 7:+45655486 MsG0780038389.01.T01:three_prime_UTR
AACTCAATAAATGAATGGTT+GGG 0.460989 7:+45655487 MsG0780038389.01.T01:three_prime_UTR
ATTAATAACGGAGCAGCTGC+TGG 0.481158 7:+45654980 MsG0780038389.01.T01:CDS
CTGAACCAAGTTAAAAGCAA+TGG 0.483940 7:-45655520 None:intergenic
TGGATCCGAATAAGTGAAAC+GGG 0.490928 7:-45651231 None:intergenic
CCTGAAACTCAATAAATGAA+TGG 0.498326 7:+45655482 MsG0780038389.01.T01:three_prime_UTR
CGGTCAATCTCCTGCCGTCA+AGG 0.507319 7:+45651331 MsG0780038389.01.T01:five_prime_UTR
TGAAACGGGTCGGGTTGAGA+TGG 0.507454 7:-45651217 None:intergenic
ATGTATTCAAGAACAGTTGT+CGG 0.515703 7:+45655327 MsG0780038389.01.T01:CDS
ATTGCTAATGAAGGGCACTT+TGG 0.521261 7:-45654518 None:intergenic
CTTTCAAACATGGCGAAGCA+TGG 0.523532 7:+45651120 MsG0780038389.01.T01:five_prime_UTR
AATGCAATCATGAAGGCTAC+TGG 0.526214 7:+45654538 MsG0780038389.01.T01:CDS
GATACAAATCCGTTGAGTCA+TGG 0.529942 7:+45652423 MsG0780038389.01.T01:CDS
GAAACGGGTCGGGTTGAGAT+GGG 0.530864 7:-45651216 None:intergenic
GTGGATCCGAATAAGTGAAA+CGG 0.534278 7:-45651232 None:intergenic
ATACAAATCCGTTGAGTCAT+GGG 0.535594 7:+45652424 MsG0780038389.01.T01:CDS
TGATTGCTTGTGGGCTTCTG+AGG 0.543946 7:+45655160 MsG0780038389.01.T01:CDS
TAAAGCGTATGATTGCTTGT+GGG 0.547167 7:+45655151 MsG0780038389.01.T01:CDS
GTAAAGCGTATGATTGCTTG+TGG 0.552392 7:+45655150 MsG0780038389.01.T01:CDS
ATGATTGCATTGCTAATGAA+GGG 0.560959 7:-45654526 None:intergenic
GTTGAGATGGGAGGACAAAA+CGG 0.561384 7:-45651204 None:intergenic
TGTTTATATAGAGTTTGCTA+AGG 0.574559 7:+45655260 MsG0780038389.01.T01:intron
TCCGAATAAGTGAAACGGGT+CGG 0.585162 7:-45651227 None:intergenic
GAACAAAGCGAAGCGGAGAG+TGG 0.585556 7:-45651251 None:intergenic
CATTAGCAATGCAATCATGA+AGG 0.598672 7:+45654531 MsG0780038389.01.T01:CDS
AAACAAACCAAAGCGTGAAG+TGG 0.600624 7:+45651079 MsG0780038389.01.T01:five_prime_UTR
ATTCAACAAATGAGTAGTTG+AGG 0.601883 7:-45655548 None:intergenic
ATACCTTACCCATGACTCAA+CGG 0.607923 7:-45652432 None:intergenic
GATTTGTATCCAATATGCAT+AGG 0.618001 7:-45652410 None:intergenic
ACGGGTCGGGTTGAGATGGG+AGG 0.629360 7:-45651213 None:intergenic
TTGAAGAAGAAGCAACGAGG+AGG 0.674890 7:+45651174 MsG0780038389.01.T01:five_prime_UTR
AAGCAATCATACGCTTTACG+GGG 0.681544 7:-45655146 None:intergenic
AGCAGCTGAACAAAGCGAAG+CGG 0.683111 7:-45651258 None:intergenic
TGTGTGTGAGGGATTACTAG+AGG 0.701472 7:+45655670 MsG0780038389.01.T01:three_prime_UTR
CCATTGAAGAAGAAGCAACG+AGG 0.740873 7:+45651171 MsG0780038389.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATATTAAAATTTAAAT+TGG - Chr7:45654423-45654442 None:intergenic 0.0%
!! GATATATTTAATATTTCTTA+AGG + Chr7:45653991-45654010 MsG0780038389.01.T01:intron 10.0%
!! TTAATCAATTTAAATTAACA+TGG + Chr7:45653969-45653988 MsG0780038389.01.T01:intron 10.0%
!!! AGATTTTTTTTTATTTTTTC+AGG - Chr7:45651411-45651430 None:intergenic 10.0%
!!! ATCTAAATTTTCATTTAATT+TGG + Chr7:45651462-45651481 MsG0780038389.01.T01:intron 10.0%
!!! TCTAAATTTTCATTTAATTT+GGG + Chr7:45651463-45651482 MsG0780038389.01.T01:intron 10.0%
!!! TTTATATATTCAAGTTAATT+TGG + Chr7:45653152-45653171 MsG0780038389.01.T01:intron 10.0%
!! AAAAGACAAATGAAAAAAAA+AGG - Chr7:45654190-45654209 None:intergenic 15.0%
!!! AACATAATATTTTCATTTAG+AGG + Chr7:45655426-45655445 MsG0780038389.01.T01:three_prime_UTR 15.0%
!!! ACAATTGTTATTATCATTAT+CGG - Chr7:45651291-45651310 None:intergenic 15.0%
!!! CTAAATTTTCATTTAATTTG+GGG + Chr7:45651464-45651483 MsG0780038389.01.T01:intron 15.0%
!! AAAATATAAACATGTTTGGA+AGG - Chr7:45652212-45652231 None:intergenic 20.0%
!! AATAGATATAAGAAGATTGA+GGG + Chr7:45653477-45653496 MsG0780038389.01.T01:intron 20.0%
!! ACTTTGTACTAAATAGTAAA+TGG - Chr7:45652689-45652708 None:intergenic 20.0%
!! ATAAGGGTAATAAAAATAGT+TGG + Chr7:45654127-45654146 MsG0780038389.01.T01:intron 20.0%
!! ATATAATAAATACGTGTATC+AGG + Chr7:45652590-45652609 MsG0780038389.01.T01:intron 20.0%
!! ATATCTTCATAGTAATTCAT+AGG + Chr7:45654922-45654941 MsG0780038389.01.T01:intron 20.0%
!! ATTGAAAAACTTGATTCATT+AGG - Chr7:45653619-45653638 None:intergenic 20.0%
!! GTTGAAAATATAAACATGTT+TGG - Chr7:45652216-45652235 None:intergenic 20.0%
!! TAAGGGTAATAAAAATAGTT+GGG + Chr7:45654128-45654147 MsG0780038389.01.T01:intron 20.0%
!! TATTGAAAATTACTTACTGT+TGG - Chr7:45653461-45653480 None:intergenic 20.0%
!! TCAAAAACTGCTTATATATT+TGG - Chr7:45653817-45653836 None:intergenic 20.0%
!! TGGTTCTTATATATTTGAAT+AGG + Chr7:45654610-45654629 MsG0780038389.01.T01:intron 20.0%
!! TTAAAACAAGTATTATCTGT+TGG + Chr7:45653562-45653581 MsG0780038389.01.T01:intron 20.0%
!! TTCAACGTGTTAATTAATAA+CGG + Chr7:45654968-45654987 MsG0780038389.01.T01:CDS 20.0%
!! TTCTTATATTTATGATCAGA+GGG + Chr7:45651433-45651452 MsG0780038389.01.T01:intron 20.0%
!! TTTCTTATATTTATGATCAG+AGG + Chr7:45651432-45651451 MsG0780038389.01.T01:intron 20.0%
!!! AAATGGAATAATGGATATTT+CGG - Chr7:45653218-45653237 None:intergenic 20.0%
!!! ACTCTTTAAACTTTTAAACA+AGG - Chr7:45651964-45651983 None:intergenic 20.0%
!!! GAATCATGAATAGAAATTTT+AGG + Chr7:45652972-45652991 MsG0780038389.01.T01:intron 20.0%
!!! GTTGAAAATACTGATTAAAT+TGG + Chr7:45651982-45652001 MsG0780038389.01.T01:intron 20.0%
!!! TATCGTAGAAAAGTATTTAA+AGG - Chr7:45654900-45654919 None:intergenic 20.0%
!!! TTATATATTTGGTTTACCAT+GGG - Chr7:45653806-45653825 None:intergenic 20.0%
!!! TTTTTTCTTTCTTTCAAACA+TGG + Chr7:45651110-45651129 MsG0780038389.01.T01:five_prime_UTR 20.0%
!!! TTTTTTTCTCACTTTTATAC+TGG + Chr7:45653858-45653877 MsG0780038389.01.T01:intron 20.0%
! AAAATTCATGTTAAGCACAA+TGG - Chr7:45652238-45652257 None:intergenic 25.0%
! AAACAGAAAGATATGCAAAA+TGG + Chr7:45654379-45654398 MsG0780038389.01.T01:intron 25.0%
! AAACTCAATAAATGAATGGT+TGG + Chr7:45655486-45655505 MsG0780038389.01.T01:three_prime_UTR 25.0%
! AAATTGAATTGTCAACTTGT+AGG - Chr7:45653312-45653331 None:intergenic 25.0%
! AACTCAATAAATGAATGGTT+GGG + Chr7:45655487-45655506 MsG0780038389.01.T01:three_prime_UTR 25.0%
! AACTGTTTAACTACTACAAA+TGG - Chr7:45654761-45654780 None:intergenic 25.0%
! AAGATAACAAGTAGATTCAA+AGG + Chr7:45652916-45652935 MsG0780038389.01.T01:intron 25.0%
! AATCTTCATTCTTACTTTCT+TGG - Chr7:45655366-45655385 None:intergenic 25.0%
! ACAAGTCAACGAATAAATAA+TGG - Chr7:45651369-45651388 None:intergenic 25.0%
! AGCAAACTCTATATAAACAA+GGG - Chr7:45655259-45655278 None:intergenic 25.0%
! ATAGTAATTCATAGGATGTT+TGG + Chr7:45654930-45654949 MsG0780038389.01.T01:intron 25.0%
! ATGATGTATGCACAAAATAT+TGG - Chr7:45655588-45655607 None:intergenic 25.0%
! ATGGTAAATATAGTGAAACA+AGG - Chr7:45654230-45654249 None:intergenic 25.0%
! ATTCACTCAAAATGGAATAA+TGG - Chr7:45653227-45653246 None:intergenic 25.0%
! ATTTATAAGTCTTAGACATC+AGG - Chr7:45651665-45651684 None:intergenic 25.0%
! CAATAGATATAAGAAGATTG+AGG + Chr7:45653476-45653495 MsG0780038389.01.T01:intron 25.0%
! CATTCATTTATTGAGTTTCA+GGG - Chr7:45655484-45655503 None:intergenic 25.0%
! GTTATTATCATTATCGGAAT+CGG - Chr7:45651285-45651304 None:intergenic 25.0%
! TACATAAGCATTAAAGCTAA+TGG - Chr7:45652149-45652168 None:intergenic 25.0%
! TACCATAAATTACAAGACAT+AGG + Chr7:45654244-45654263 MsG0780038389.01.T01:intron 25.0%
! TAGCAAACTCTATATAAACA+AGG - Chr7:45655260-45655279 None:intergenic 25.0%
! TATAACTATGTTACATGATG+TGG + Chr7:45654725-45654744 MsG0780038389.01.T01:intron 25.0%
! TATGTTGTTAGATGTTCTAA+GGG + Chr7:45652885-45652904 MsG0780038389.01.T01:intron 25.0%
! TCAGGAATGTTGTTAAATAA+CGG + Chr7:45652608-45652627 MsG0780038389.01.T01:intron 25.0%
! TTCCTATGTCTTGTAATTTA+TGG - Chr7:45654249-45654268 None:intergenic 25.0%
!! AAAAATAGTTGGGAAGTTTT+TGG + Chr7:45654138-45654157 MsG0780038389.01.T01:intron 25.0%
!! CTGAAATGAACATGTTTTAT+AGG - Chr7:45655108-45655127 None:intergenic 25.0%
!! CTTATATATTTGGTTTACCA+TGG - Chr7:45653807-45653826 None:intergenic 25.0%
!! TAACGCTATTAACTTTTACT+TGG - Chr7:45655394-45655413 None:intergenic 25.0%
!! TACTTCTGACATCTATATTT+TGG + Chr7:45653376-45653395 MsG0780038389.01.T01:intron 25.0%
!! TTTCTCATTTTGCCAAAAAA+AGG - Chr7:45654682-45654701 None:intergenic 25.0%
!! TTTGCAGCTATATTAGTTTA+GGG + Chr7:45651894-45651913 MsG0780038389.01.T01:intron 25.0%
!!! AGAAAAGTATTTAAAGGAGT+TGG - Chr7:45654894-45654913 None:intergenic 25.0%
!!! CTAGTTTTCTTTCCAATTTT+TGG + Chr7:45652031-45652050 MsG0780038389.01.T01:intron 25.0%
!!! GAATAGAAATTTTAGGAACA+GGG + Chr7:45652979-45652998 MsG0780038389.01.T01:intron 25.0%
!!! TACAAAGTGTTGTTAAATAG+TGG + Chr7:45652701-45652720 MsG0780038389.01.T01:intron 25.0%
!!! TGAATAGAAATTTTAGGAAC+AGG + Chr7:45652978-45652997 MsG0780038389.01.T01:intron 25.0%
!!! TGTTTATATAGAGTTTGCTA+AGG + Chr7:45655260-45655279 MsG0780038389.01.T01:intron 25.0%
!!! TTATTCCATTTTGAGTGAAT+TGG + Chr7:45653227-45653246 MsG0780038389.01.T01:intron 25.0%
!!! TTTCATTTAATTTGGGGTTT+GGG + Chr7:45651470-45651489 MsG0780038389.01.T01:intron 25.0%
!!! TTTTCATTTAATTTGGGGTT+TGG + Chr7:45651469-45651488 MsG0780038389.01.T01:intron 25.0%
!!! TTTTGCAGCTATATTAGTTT+AGG + Chr7:45651893-45651912 MsG0780038389.01.T01:intron 25.0%
AAAGTGAGAAAAAAAGACTC+AGG - Chr7:45653853-45653872 None:intergenic 30.0%
AACACAGACAAAAAGGAAAT+GGG - Chr7:45652831-45652850 None:intergenic 30.0%
AATAACACAACATTACACAG+TGG - Chr7:45652478-45652497 None:intergenic 30.0%
AATGAAGGGTAATGAGATTT+CGG - Chr7:45653425-45653444 None:intergenic 30.0%
ACTTGACATTGAAAGAAACT+AGG - Chr7:45654340-45654359 None:intergenic 30.0%
ATGATTGCATTGCTAATGAA+GGG - Chr7:45654529-45654548 None:intergenic 30.0%
ATGTATTCAAGAACAGTTGT+CGG + Chr7:45655327-45655346 MsG0780038389.01.T01:CDS 30.0%
ATTCAACAAATGAGTAGTTG+AGG - Chr7:45655551-45655570 None:intergenic 30.0%
CAAGTAGATTCAAAGGAAAA+AGG + Chr7:45652923-45652942 MsG0780038389.01.T01:intron 30.0%
CAATGTGTTTATATGTCATC+AGG - Chr7:45654294-45654313 None:intergenic 30.0%
CCATTCATTTATTGAGTTTC+AGG - Chr7:45655485-45655504 None:intergenic 30.0%
CCTGAAACTCAATAAATGAA+TGG + Chr7:45655482-45655501 MsG0780038389.01.T01:three_prime_UTR 30.0%
CTTGACATTGAAAGAAACTA+GGG - Chr7:45654339-45654358 None:intergenic 30.0%
GATTTGTATCCAATATGCAT+AGG - Chr7:45652413-45652432 None:intergenic 30.0%
GTATGTTGTTAGATGTTCTA+AGG + Chr7:45652884-45652903 MsG0780038389.01.T01:intron 30.0%
TAATTGTAAATGCGAGACAA+TGG + Chr7:45654438-45654457 MsG0780038389.01.T01:intron 30.0%
TACAAAAATGACAATGTGCA+GGG - Chr7:45654871-45654890 None:intergenic 30.0%
TGAAAATTACTTACTGTTGG+AGG - Chr7:45653458-45653477 None:intergenic 30.0%
TGTAACACAACAAGAAAAGA+AGG - Chr7:45653110-45653129 None:intergenic 30.0%
TTCTCATCGTCTAAATTAAG+TGG - Chr7:45655289-45655308 None:intergenic 30.0%
TTGACATTGAAAGAAACTAG+GGG - Chr7:45654338-45654357 None:intergenic 30.0%
TTTAGTAATGACTAGTGACT+AGG - Chr7:45652302-45652321 None:intergenic 30.0%
TTTCCTAAGCTGATTACTTA+TGG + Chr7:45654471-45654490 MsG0780038389.01.T01:intron 30.0%
TTTGATACACTGCATGAAAA+TGG - Chr7:45654809-45654828 None:intergenic 30.0%
! ACAATTTTCCTTGTGGAAAA+AGG - Chr7:45653915-45653934 None:intergenic 30.0%
! ATGTTGTTAGATGTTCTAAG+GGG + Chr7:45652886-45652905 MsG0780038389.01.T01:intron 30.0%
! ATTAGGCTGTTTCGTAAAAT+TGG - Chr7:45653602-45653621 None:intergenic 30.0%
! TAATTTGGAACAGAAGAGAA+AGG + Chr7:45653167-45653186 MsG0780038389.01.T01:intron 30.0%
! TCGTAAAACAATTTTCCTTG+TGG - Chr7:45653922-45653941 None:intergenic 30.0%
! TCTTGAAGCTACATTTTGTT+TGG + Chr7:45651803-45651822 MsG0780038389.01.T01:intron 30.0%
! TGATAAATCCTTTTTCCACA+AGG + Chr7:45653904-45653923 MsG0780038389.01.T01:intron 30.0%
!! AGGCAATATTGTGTTGATTT+AGG + Chr7:45651744-45651763 MsG0780038389.01.T01:intron 30.0%
!! ATATTGTGTTGATTTAGGAC+AGG + Chr7:45651749-45651768 MsG0780038389.01.T01:intron 30.0%
!! CTTAACCATTGCTTTTAACT+TGG + Chr7:45655515-45655534 MsG0780038389.01.T01:three_prime_UTR 30.0%
!! TTCATTTAATTTGGGGTTTG+GGG + Chr7:45651471-45651490 MsG0780038389.01.T01:intron 30.0%
!!! ACTTTTTCAACTATTCTGCA+TGG + Chr7:45653338-45653357 MsG0780038389.01.T01:intron 30.0%
AAACAGTTACCAACAGAAGT+TGG + Chr7:45653653-45653672 MsG0780038389.01.T01:intron 35.0%
AACAGTTACCAACAGAAGTT+GGG + Chr7:45653654-45653673 MsG0780038389.01.T01:intron 35.0%
AAGCTGATTACTTATGGTAC+AGG + Chr7:45654477-45654496 MsG0780038389.01.T01:intron 35.0%
ACAAGCAATCATACGCTTTA+CGG - Chr7:45655151-45655170 None:intergenic 35.0%
AGAACTTGAGTTTGATTCCT+GGG + Chr7:45651547-45651566 MsG0780038389.01.T01:intron 35.0%
ATACAAATCCGTTGAGTCAT+GGG + Chr7:45652424-45652443 MsG0780038389.01.T01:CDS 35.0%
ATGAAGGGTAATGAGATTTC+GGG - Chr7:45653424-45653443 None:intergenic 35.0%
ATGTCACAACACAGACAAAA+AGG - Chr7:45652838-45652857 None:intergenic 35.0%
CAACACAGACAAAAAGGAAA+TGG - Chr7:45652832-45652851 None:intergenic 35.0%
CATACATGTCAACTTGACTT+TGG - Chr7:45652869-45652888 None:intergenic 35.0%
CATGATTGCATTGCTAATGA+AGG - Chr7:45654530-45654549 None:intergenic 35.0%
CATTAGCAATGCAATCATGA+AGG + Chr7:45654531-45654550 MsG0780038389.01.T01:CDS 35.0%
CTATATATAGCATTGCTGAG+TGG + Chr7:45652724-45652743 MsG0780038389.01.T01:intron 35.0%
CTGAACCAAGTTAAAAGCAA+TGG - Chr7:45655523-45655542 None:intergenic 35.0%
CTTCAATGGACATCTTTGTT+GGG - Chr7:45651160-45651179 None:intergenic 35.0%
GAAATCTCATTACCCTTCAT+TGG + Chr7:45653424-45653443 MsG0780038389.01.T01:intron 35.0%
GAACAGAAGAGAAAGGATAA+TGG + Chr7:45653174-45653193 MsG0780038389.01.T01:intron 35.0%
GCATGTCAGACACTAAATAT+GGG - Chr7:45653745-45653764 None:intergenic 35.0%
GGAAATGGGAGAAAAAATAG+AGG - Chr7:45652817-45652836 None:intergenic 35.0%
GGAAGAAAAAGAAACCTTGA+CGG - Chr7:45651348-45651367 None:intergenic 35.0%
GTACAAAAATGACAATGTGC+AGG - Chr7:45654872-45654891 None:intergenic 35.0%
GTACCATAAGTAATCAGCTT+AGG - Chr7:45654477-45654496 None:intergenic 35.0%
GTCAACCAATTCACTCAAAA+TGG - Chr7:45653235-45653254 None:intergenic 35.0%
GTCCCTTAAATGATTAAGCA+CGG - Chr7:45654046-45654065 None:intergenic 35.0%
GTCCGTGCTTAATCATTTAA+GGG + Chr7:45654041-45654060 MsG0780038389.01.T01:intron 35.0%
GTTAGGTAGGTGGTTTATAA+GGG + Chr7:45654111-45654130 MsG0780038389.01.T01:intron 35.0%
TAAAGCGTATGATTGCTTGT+GGG + Chr7:45655151-45655170 MsG0780038389.01.T01:CDS 35.0%
TCTCGAATCACAGAAAATAG+CGG - Chr7:45652762-45652781 None:intergenic 35.0%
TCTTCAATGGACATCTTTGT+TGG - Chr7:45651161-45651180 None:intergenic 35.0%
TGTCCGTGCTTAATCATTTA+AGG + Chr7:45654040-45654059 MsG0780038389.01.T01:intron 35.0%
TTTGGTAGAACTGAAAGAGA+GGG + Chr7:45651821-45651840 MsG0780038389.01.T01:intron 35.0%
! ATTTTTGCTGCCTGTACATT+TGG + Chr7:45652503-45652522 MsG0780038389.01.T01:intron 35.0%
! GCTGCAAAAAGTTTAAGTTC+TGG - Chr7:45651882-45651901 None:intergenic 35.0%
! GTCTTTTGCAACATTATTCG+CGG + Chr7:45651311-45651330 MsG0780038389.01.T01:five_prime_UTR 35.0%
! TTTTGCTGGTAGATATCCTA+CGG + Chr7:45654643-45654662 MsG0780038389.01.T01:intron 35.0%
!! AATTTTAGGAACAGGGTTTG+TGG + Chr7:45652986-45653005 MsG0780038389.01.T01:intron 35.0%
!! ATTTTAGGAACAGGGTTTGT+GGG + Chr7:45652987-45653006 MsG0780038389.01.T01:intron 35.0%
!! GGGTTTGTTTGATTGTGTTT+TGG + Chr7:45653497-45653516 MsG0780038389.01.T01:intron 35.0%
!! TAGGAATCACTCATTTTTGC+TGG + Chr7:45654629-45654648 MsG0780038389.01.T01:intron 35.0%
!!! ACATCTATATTTTGGTCACC+AGG + Chr7:45653384-45653403 MsG0780038389.01.T01:intron 35.0%
!!! AGTCATTTTTGTGTGTGTGA+GGG + Chr7:45655659-45655678 MsG0780038389.01.T01:three_prime_UTR 35.0%
!!! TACCTTGCAATGCCTTTTTT+TGG + Chr7:45654667-45654686 MsG0780038389.01.T01:intron 35.0%
AAACAAACCAAAGCGTGAAG+TGG + Chr7:45651079-45651098 MsG0780038389.01.T01:five_prime_UTR 40.0%
AAGCAATCATACGCTTTACG+GGG - Chr7:45655149-45655168 None:intergenic 40.0%
AATGCAATCATGAAGGCTAC+TGG + Chr7:45654538-45654557 MsG0780038389.01.T01:CDS 40.0%
AATGCATCGCAGCCAAAAAT+TGG - Chr7:45652046-45652065 None:intergenic 40.0%
AATGTGAGAGCAAACTTGGT+TGG - Chr7:45652339-45652358 None:intergenic 40.0%
ACACAACAAGAAAAGAAGGC+AGG - Chr7:45653106-45653125 None:intergenic 40.0%
ACATAGGAAATGCGCGAATA+TGG + Chr7:45654260-45654279 MsG0780038389.01.T01:intron 40.0%
ACATTTCATTCCACCAAGGA+AGG - Chr7:45651706-45651725 None:intergenic 40.0%
ACTCGGATGATGTATGAGTA+AGG - Chr7:45654579-45654598 None:intergenic 40.0%
ACTTATGGGAATCCTACTCA+AGG - Chr7:45653767-45653786 None:intergenic 40.0%
AGTCAATGTGAGAGCAAACT+TGG - Chr7:45652343-45652362 None:intergenic 40.0%
ATACCTTACCCATGACTCAA+CGG - Chr7:45652435-45652454 None:intergenic 40.0%
ATCAGCTGTCTGCAAATGTT+AGG + Chr7:45652092-45652111 MsG0780038389.01.T01:intron 40.0%
ATTCACGTCTTTGATTGCCA+GGG - Chr7:45651638-45651657 None:intergenic 40.0%
CAAGCAATCATACGCTTTAC+GGG - Chr7:45655150-45655169 None:intergenic 40.0%
CACAACAAGAAAAGAAGGCA+GGG - Chr7:45653105-45653124 None:intergenic 40.0%
CATTGAAAGAAACTAGGGGT+AGG - Chr7:45654334-45654353 None:intergenic 40.0%
CCATGTATGTCCAAATGTAC+AGG - Chr7:45652516-45652535 None:intergenic 40.0%
CCTGTACATTTGGACATACA+TGG + Chr7:45652513-45652532 MsG0780038389.01.T01:intron 40.0%
CTCTCACAGTTGAAACAGTA+GGG - Chr7:45654091-45654110 None:intergenic 40.0%
CTGATTACTTATGGTACAGG+TGG + Chr7:45654480-45654499 MsG0780038389.01.T01:intron 40.0%
GAACCAAACAAAGCAAGACT+CGG - Chr7:45654596-45654615 None:intergenic 40.0%
GAATCAAACTCAAGTTCTCC+TGG - Chr7:45651545-45651564 None:intergenic 40.0%
GAGAACTTGAGTTTGATTCC+TGG + Chr7:45651546-45651565 MsG0780038389.01.T01:intron 40.0%
GATACAAATCCGTTGAGTCA+TGG + Chr7:45652423-45652442 MsG0780038389.01.T01:CDS 40.0%
GCATTAAAGCTAATGGCAGA+TGG - Chr7:45652142-45652161 None:intergenic 40.0%
GGCATGTCAGACACTAAATA+TGG - Chr7:45653746-45653765 None:intergenic 40.0%
GGTAAACCAATGTTCGAATC+TGG + Chr7:45653707-45653726 MsG0780038389.01.T01:intron 40.0%
GGTTAGGTAGGTGGTTTATA+AGG + Chr7:45654110-45654129 MsG0780038389.01.T01:intron 40.0%
GTAAAGCGTATGATTGCTTG+TGG + Chr7:45655150-45655169 MsG0780038389.01.T01:CDS 40.0%
GTGGATCCGAATAAGTGAAA+CGG - Chr7:45651235-45651254 None:intergenic 40.0%
GTTTGGTAGAACTGAAAGAG+AGG + Chr7:45651820-45651839 MsG0780038389.01.T01:intron 40.0%
TCTCACAGTTGAAACAGTAG+GGG - Chr7:45654090-45654109 None:intergenic 40.0%
TGGATCCGAATAAGTGAAAC+GGG - Chr7:45651234-45651253 None:intergenic 40.0%
TGTTTCAACTGTGAGAGGTT+AGG + Chr7:45654094-45654113 MsG0780038389.01.T01:intron 40.0%
! AGAAATACCTTGCTATGTGC+TGG + Chr7:45654017-45654036 MsG0780038389.01.T01:intron 40.0%
! GTTGATTTAGGACAGGTTGA+TGG + Chr7:45651756-45651775 MsG0780038389.01.T01:intron 40.0%
!! ATTGCTAATGAAGGGCACTT+TGG - Chr7:45654521-45654540 None:intergenic 40.0%
!! TGCCAAAAAAAGGCATTGCA+AGG - Chr7:45654672-45654691 None:intergenic 40.0%
!! TTTTAGGAACAGGGTTTGTG+GGG + Chr7:45652988-45653007 MsG0780038389.01.T01:intron 40.0%
!!! CAGTCATTTTTGTGTGTGTG+AGG + Chr7:45655658-45655677 MsG0780038389.01.T01:three_prime_UTR 40.0%
AACAAGAAAAGAAGGCAGGG+TGG - Chr7:45653102-45653121 None:intergenic 45.0%
AACCAATGTTCGAATCTGGC+TGG + Chr7:45653711-45653730 MsG0780038389.01.T01:intron 45.0%
AATCCGTTGAGTCATGGGTA+AGG + Chr7:45652429-45652448 MsG0780038389.01.T01:intron 45.0%
ACCAATGTTCGAATCTGGCT+GGG + Chr7:45653712-45653731 MsG0780038389.01.T01:intron 45.0%
ACCATCTAAGTGAATCGTCC+AGG + Chr7:45651524-45651543 MsG0780038389.01.T01:intron 45.0%
ACTTGAGTTTGATTCCTGGG+TGG + Chr7:45651550-45651569 MsG0780038389.01.T01:intron 45.0%
AGAAGTTGGGTCTAGTGGAA+GGG + Chr7:45653667-45653686 MsG0780038389.01.T01:intron 45.0%
AGGGTTAGACTCTCACAACA+TGG + Chr7:45653686-45653705 MsG0780038389.01.T01:intron 45.0%
ATCCTACTCGAGGGAACTTA+TGG - Chr7:45653782-45653801 None:intergenic 45.0%
CACGACATTTCATTCCACCA+AGG - Chr7:45651710-45651729 None:intergenic 45.0%
CAGCACGCATTTGACAAAGT+TGG - Chr7:45653271-45653290 None:intergenic 45.0%
CATTCACGTCTTTGATTGCC+AGG - Chr7:45651639-45651658 None:intergenic 45.0%
CCATTGAAGAAGAAGCAACG+AGG + Chr7:45651171-45651190 MsG0780038389.01.T01:five_prime_UTR 45.0%
CCTACTGTTTCAACTGTGAG+AGG + Chr7:45654089-45654108 MsG0780038389.01.T01:intron 45.0%
CCTCGTTGCTTCTTCTTCAA+TGG - Chr7:45651174-45651193 None:intergenic 45.0%
CCTCTCACAGTTGAAACAGT+AGG - Chr7:45654092-45654111 None:intergenic 45.0%
CTGTCTGCAAATGTTAGGCA+AGG + Chr7:45652097-45652116 MsG0780038389.01.T01:intron 45.0%
CTTTCAAACATGGCGAAGCA+TGG + Chr7:45651120-45651139 MsG0780038389.01.T01:five_prime_UTR 45.0%
GAAAAAGAAACCTTGACGGC+AGG - Chr7:45651344-45651363 None:intergenic 45.0%
GAGGAGTAGCATCCAATGAA+GGG - Chr7:45653439-45653458 None:intergenic 45.0%
GGCAATCAAAGACGTGAATG+AGG + Chr7:45651639-45651658 MsG0780038389.01.T01:intron 45.0%
GTTGAGATGGGAGGACAAAA+CGG - Chr7:45651207-45651226 None:intergenic 45.0%
TCAACTGTGAGAGGTTAGGT+AGG + Chr7:45654098-45654117 MsG0780038389.01.T01:intron 45.0%
TCCGAATAAGTGAAACGGGT+CGG - Chr7:45651230-45651249 None:intergenic 45.0%
TCCTACTCGAGGGAACTTAT+GGG - Chr7:45653781-45653800 None:intergenic 45.0%
TCCTGGACGATTCACTTAGA+TGG - Chr7:45651528-45651547 None:intergenic 45.0%
TCTGCAAATGTTAGGCAAGG+CGG + Chr7:45652100-45652119 MsG0780038389.01.T01:intron 45.0%
TGACACGTGCCTATGCATAT+TGG + Chr7:45652401-45652420 MsG0780038389.01.T01:exon 45.0%
TGTCAACTTGACTTTGGCGT+AGG - Chr7:45652863-45652882 None:intergenic 45.0%
TGTGTGTGAGGGATTACTAG+AGG + Chr7:45655670-45655689 MsG0780038389.01.T01:three_prime_UTR 45.0%
TTGAAGAAGAAGCAACGAGG+AGG + Chr7:45651174-45651193 MsG0780038389.01.T01:five_prime_UTR 45.0%
! ATTAATAACGGAGCAGCTGC+TGG + Chr7:45654980-45654999 MsG0780038389.01.T01:CDS 45.0%
! CATCCGAGTCTTGCTTTGTT+TGG + Chr7:45654590-45654609 MsG0780038389.01.T01:intron 45.0%
! CTACTAGTTCTTTCAAGCCG+TGG + Chr7:45652068-45652087 MsG0780038389.01.T01:intron 45.0%
! GTCGTGCTACTAAATTGCGA+AGG + Chr7:45651724-45651743 MsG0780038389.01.T01:intron 45.0%
! TTTGCAGACAGCTGATTCCA+CGG - Chr7:45652088-45652107 None:intergenic 45.0%
!! ATTAAAAAATAAATAAAACT+AGG - Chr7:45653065-45653084 None:intergenic 5.0%
ACCATGGGAATCCTACTCGA+GGG - Chr7:45653791-45653810 None:intergenic 50.0%
ACCCAGCCAGATTCGAACAT+TGG - Chr7:45653716-45653735 None:intergenic 50.0%
ACGTCTTTGATTGCCAGGGA+AGG - Chr7:45651634-45651653 None:intergenic 50.0%
ACTGTGAGAGGTTAGGTAGG+TGG + Chr7:45654101-45654120 MsG0780038389.01.T01:intron 50.0%
AGCAGCTGAACAAAGCGAAG+CGG - Chr7:45651261-45651280 None:intergenic 50.0%
CACAGTTGAAACAGTAGGGG+TGG - Chr7:45654087-45654106 None:intergenic 50.0%
CAGAAGTTGGGTCTAGTGGA+AGG + Chr7:45653666-45653685 MsG0780038389.01.T01:intron 50.0%
CCAACAGAAGTTGGGTCTAG+TGG + Chr7:45653662-45653681 MsG0780038389.01.T01:intron 50.0%
CCACTAGACCCAACTTCTGT+TGG - Chr7:45653665-45653684 None:intergenic 50.0%
CCCGACCCGTTTCACTTATT+CGG + Chr7:45651226-45651245 MsG0780038389.01.T01:five_prime_UTR 50.0%
CCGAATAAGTGAAACGGGTC+GGG - Chr7:45651229-45651248 None:intergenic 50.0%
CGTCTTTGATTGCCAGGGAA+GGG - Chr7:45651633-45651652 None:intergenic 50.0%
GACAGGCTATGCTTACCTCA+CGG + Chr7:45651584-45651603 MsG0780038389.01.T01:intron 50.0%
GATGCAAAAGCCTTCCTTGG+TGG + Chr7:45651693-45651712 MsG0780038389.01.T01:intron 50.0%
GCAGATGCAAAAGCCTTCCT+TGG + Chr7:45651690-45651709 MsG0780038389.01.T01:intron 50.0%
GGAGGAGTAGCATCCAATGA+AGG - Chr7:45653440-45653459 None:intergenic 50.0%
GTCTTTGATTGCCAGGGAAG+GGG - Chr7:45651632-45651651 None:intergenic 50.0%
GTGTCTGACATGCCTTGAGT+AGG + Chr7:45653752-45653771 MsG0780038389.01.T01:intron 50.0%
TACCATGGGAATCCTACTCG+AGG - Chr7:45653792-45653811 None:intergenic 50.0%
TCCCATAAGTTCCCTCGAGT+AGG + Chr7:45653777-45653796 MsG0780038389.01.T01:intron 50.0%
TCTTTGATTGCCAGGGAAGG+GGG - Chr7:45651631-45651650 None:intergenic 50.0%
TGATTGCTTGTGGGCTTCTG+AGG + Chr7:45655160-45655179 MsG0780038389.01.T01:CDS 50.0%
TTCCTGGGTGGAACGATTCT+TGG + Chr7:45651562-45651581 MsG0780038389.01.T01:intron 50.0%
! AGGCATTGCAAGGTATCCGT+AGG - Chr7:45654662-45654681 None:intergenic 50.0%
! GGGGGGGTGTGAAATAGAAA+GGG + Chr7:45653022-45653041 MsG0780038389.01.T01:intron 50.0%
! TAATCTGGAGTTCGACCGTG+AGG - Chr7:45651602-45651621 None:intergenic 50.0%
AACAGGGTTTGTGGGGTGGT+GGG + Chr7:45652995-45653014 MsG0780038389.01.T01:intron 55.0%
ACGGACACCAGCACATAGCA+AGG - Chr7:45654027-45654046 None:intergenic 55.0%
CGGTCGAACTCCAGATTACC+AGG + Chr7:45651604-45651623 MsG0780038389.01.T01:intron 55.0%
GAACAAAGCGAAGCGGAGAG+TGG - Chr7:45651254-45651273 None:intergenic 55.0%
GCAACGACCACTTCACGCTT+TGG - Chr7:45651089-45651108 None:intergenic 55.0%
GGGTGGAACGATTCTTGGAC+AGG + Chr7:45651567-45651586 MsG0780038389.01.T01:intron 55.0%
GTCCAAGAATCGTTCCACCC+AGG - Chr7:45651567-45651586 None:intergenic 55.0%
TAGGAACAGGGTTTGTGGGG+TGG + Chr7:45652991-45653010 MsG0780038389.01.T01:intron 55.0%
TCCCTCGAGTAGGATTCCCA+TGG + Chr7:45653787-45653806 MsG0780038389.01.T01:intron 55.0%
! GGGGGGGGTGTGAAATAGAA+AGG + Chr7:45653021-45653040 MsG0780038389.01.T01:intron 55.0%
!! CGGGATAATGAGAGAGTGCC+TGG - Chr7:45653405-45653424 None:intergenic 55.0%
!! GAAACGGGTCGGGTTGAGAT+GGG - Chr7:45651219-45651238 None:intergenic 55.0%
!! TGAAACGGGTCGGGTTGAGA+TGG - Chr7:45651220-45651239 None:intergenic 55.0%
ATTACCAGGTCCCCCTTCCC+TGG + Chr7:45651618-45651637 MsG0780038389.01.T01:intron 60.0%
CGGTCAATCTCCTGCCGTCA+AGG + Chr7:45651331-45651350 MsG0780038389.01.T01:five_prime_UTR 60.0%
GAACAGGGTTTGTGGGGTGG+TGG + Chr7:45652994-45653013 MsG0780038389.01.T01:intron 60.0%
GGAAGGGGGACCTGGTAATC+TGG - Chr7:45651617-45651636 None:intergenic 60.0%
ATTGCCAGGGAAGGGGGACC+TGG - Chr7:45651625-45651644 None:intergenic 65.0%
!! ACGGGTCGGGTTGAGATGGG+AGG - Chr7:45651216-45651235 None:intergenic 65.0%
!! AGGGTTTGTGGGGTGGTGGG+TGG + Chr7:45652998-45653017 MsG0780038389.01.T01:intron 65.0%
!! GGGTTTGTGGGGTGGTGGGT+GGG + Chr7:45652999-45653018 MsG0780038389.01.T01:intron 65.0%
!! GGTTTGTGGGGTGGTGGGTG+GGG + Chr7:45653000-45653019 MsG0780038389.01.T01:intron 65.0%
!! GTTTGTGGGGTGGTGGGTGG+GGG + Chr7:45653001-45653020 MsG0780038389.01.T01:intron 65.0%
!! TTTGTGGGGTGGTGGGTGGG+GGG + Chr7:45653002-45653021 MsG0780038389.01.T01:intron 65.0%
!! TTGTGGGGTGGTGGGTGGGG+GGG + Chr7:45653003-45653022 MsG0780038389.01.T01:intron 70.0%
!! TGTGGGGTGGTGGGTGGGGG+GGG + Chr7:45653004-45653023 MsG0780038389.01.T01:intron 75.0%
!!! GTGGGGTGGTGGGTGGGGGG+GGG + Chr7:45653005-45653024 MsG0780038389.01.T01:intron 80.0%
!!! TGGGGTGGTGGGTGGGGGGG+GGG + Chr7:45653006-45653025 MsG0780038389.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr7 gene 45651041 45655734 45651041 ID=MsG0780038389.01;Name=MsG0780038389.01
Chr7 mRNA 45651041 45655734 45651041 ID=MsG0780038389.01.T01;Parent=MsG0780038389.01;Name=MsG0780038389.01.T01;_AED=0.40;_eAED=0.40;_QI=335|0.8|1|1|0.8|0.66|6|329|114
Chr7 exon 45651041 45651352 45651041 ID=MsG0780038389.01.T01:exon:13990;Parent=MsG0780038389.01.T01
Chr7 exon 45652390 45652445 45652390 ID=MsG0780038389.01.T01:exon:13991;Parent=MsG0780038389.01.T01
Chr7 exon 45654499 45654565 45654499 ID=MsG0780038389.01.T01:exon:13992;Parent=MsG0780038389.01.T01
Chr7 exon 45654963 45655018 45654963 ID=MsG0780038389.01.T01:exon:13993;Parent=MsG0780038389.01.T01
Chr7 exon 45655128 45655181 45655128 ID=MsG0780038389.01.T01:exon:13994;Parent=MsG0780038389.01.T01
Chr7 exon 45655271 45655734 45655271 ID=MsG0780038389.01.T01:exon:13995;Parent=MsG0780038389.01.T01
Chr7 five_prime_UTR 45651041 45651352 45651041 ID=MsG0780038389.01.T01:five_prime_utr;Parent=MsG0780038389.01.T01
Chr7 five_prime_UTR 45652390 45652412 45652390 ID=MsG0780038389.01.T01:five_prime_utr;Parent=MsG0780038389.01.T01
Chr7 CDS 45652413 45652445 45652413 ID=MsG0780038389.01.T01:cds;Parent=MsG0780038389.01.T01
Chr7 CDS 45654499 45654565 45654499 ID=MsG0780038389.01.T01:cds;Parent=MsG0780038389.01.T01
Chr7 CDS 45654963 45655018 45654963 ID=MsG0780038389.01.T01:cds;Parent=MsG0780038389.01.T01
Chr7 CDS 45655128 45655181 45655128 ID=MsG0780038389.01.T01:cds;Parent=MsG0780038389.01.T01
Chr7 CDS 45655271 45655405 45655271 ID=MsG0780038389.01.T01:cds;Parent=MsG0780038389.01.T01
Chr7 three_prime_UTR 45655406 45655734 45655406 ID=MsG0780038389.01.T01:three_prime_utr;Parent=MsG0780038389.01.T01
Gene Sequence

>MsG0780038389.01.T01

ATGCATATTGGATACAAATCCGTTGAGTCATGGGTGGTAGCTGCAATGAGTTCCAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCAATTCATTCAACGTGTTAATTAATAACGGAGCAGCTGCTGGTCAAGTAATATTTCATACTCATATGCACATAATTCCCCGTAAAGCGTATGATTGCTTGTGGGCTTCTGAGAGTTTGCTAAGGCGTCCACTTAATTTAGACGATGAGAAAGTTTCTCAACTCGCTGCATGTATTCAAGAACAGTTGTCGGTATCAGACATTTGCCAAGAAAGTAAGAATGAAGATTTTTGTCCAAGTAAAAGTTAA
Protein sequence

>MsG0780038389.01.T01

MHIGYKSVESWVVAAMSSKVPFISNAIMKATGCNSFNVLINNGAAAGQVIFHTHMHIIPRKAYDCLWASESLLRRPLNLDDEKVSQLAACIQEQLSVSDICQESKNEDFCPSKS*