AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017551.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017551.01.T01 MTR_3g108900 91.848 184 15 0 1 184 23 206 9.68e-117 330
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017551.01.T01 AT5G10700 60.335 179 54 3 6 184 24 185 1.33e-72 217
MsG0380017551.01.T01 AT5G10700 60.335 179 54 3 6 184 24 185 1.38e-72 218

Find 51 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTTGACTCATTGAGTTAA+AGG 0.322492 3:+97786113 None:intergenic
CTGATCGATACTTGGCCATT+AGG 0.378184 3:-97786000 MsG0380017551.01.T01:CDS
ACGCTTCTGTTTCCGCGGTT+TGG 0.395935 3:-97785954 MsG0380017551.01.T01:CDS
ATCTGAAACAGCCATAGTTT+AGG 0.421027 3:+97782820 None:intergenic
AGTGGTGGAATCGGTGGAGG+CGG 0.421097 3:+97786092 None:intergenic
TGAGTAACCACACTGCCTAA+TGG 0.453176 3:+97785985 None:intergenic
GGTGACAGGATCGTCTTTGT+TGG 0.456796 3:+97785930 None:intergenic
TACGAAGATACAATTGACTT+AGG 0.468453 3:+97782903 None:intergenic
TGGTCCAATACGTGGTGCTC+CGG 0.468634 3:-97786029 MsG0380017551.01.T01:CDS
GATACAATTGACTTAGGGTA+AGG 0.468771 3:+97782909 None:intergenic
TTGTCTGAGAAGCTGACATC+TGG 0.475783 3:-97782996 MsG0380017551.01.T01:CDS
GAGAGTGGTGGAATCGGTGG+AGG 0.477145 3:+97786089 None:intergenic
TAAAGGTGAGCTGACTCGTC+CGG 0.477990 3:+97786130 None:intergenic
CTCCACATCAACTGATTCGC+CGG 0.486687 3:-97786067 MsG0380017551.01.T01:CDS
CACGCCGGAGCACCACGTAT+TGG 0.503895 3:+97786025 None:intergenic
GGCGTGATCTGATCGATACT+TGG 0.507820 3:-97786008 MsG0380017551.01.T01:CDS
ACGTAGACTGTGAACATTTG+CGG 0.514078 3:+97786272 None:intergenic
CTACAATAATCAACGGTGAC+AGG 0.516772 3:+97785916 None:intergenic
TGAGAAGGCGAGGTACGAAC+GGG 0.519329 3:+97786197 None:intergenic
GTGGTGGAATCGGTGGAGGC+GGG 0.520690 3:+97786093 None:intergenic
TTGAGAAGGCGAGGTACGAA+CGG 0.522363 3:+97786196 None:intergenic
ACGAAGATACAATTGACTTA+GGG 0.534074 3:+97782904 None:intergenic
TGTGGAGAGAGTGGTGGAAT+CGG 0.534342 3:+97786083 None:intergenic
TCTACGTGTCAGTCTGTCAA+TGG 0.550680 3:-97786256 MsG0380017551.01.T01:exon
AGGCGAGGTACGAACGGGAG+GGG 0.553596 3:+97786202 None:intergenic
TTAGGTCACACTTGAAGTGA+AGG 0.554959 3:-97783039 MsG0380017551.01.T01:intron
TTCCGGCGAATCAGTTGATG+TGG 0.555932 3:+97786065 None:intergenic
GTGGGATCATTCATAAAGTG+TGG 0.560984 3:-97782974 MsG0380017551.01.T01:CDS
GGGTTGAAGAGACGAAGCGT+AGG 0.561056 3:+97786222 None:intergenic
TTAGGCAGTGTGGTTACTCA+AGG 0.562328 3:-97785982 MsG0380017551.01.T01:CDS
GAAGGCGAGGTACGAACGGG+AGG 0.562660 3:+97786200 None:intergenic
GGAGAGAGTGGTGGAATCGG+TGG 0.566146 3:+97786086 None:intergenic
AAGGCGAGGTACGAACGGGA+GGG 0.566860 3:+97786201 None:intergenic
TCTGAGAAGCTGACATCTGG+TGG 0.567728 3:-97782993 MsG0380017551.01.T01:CDS
GCCGGAAAACGTCGATGTTG+TGG 0.569743 3:-97786049 MsG0380017551.01.T01:CDS
TGAAGAGACGAAGCGTAGGA+AGG 0.573707 3:+97786226 None:intergenic
ACTAAACTTCGTTCTTGAGA+AGG 0.577942 3:+97786182 None:intergenic
GAAGAGACGAAGCGTAGGAA+GGG 0.601157 3:+97786227 None:intergenic
GTCGGGGCTACAATAATCAA+CGG 0.604557 3:+97785909 None:intergenic
TAGGTCACACTTGAAGTGAA+GGG 0.618162 3:-97783038 MsG0380017551.01.T01:CDS
ACTTCGTTCTTGAGAAGGCG+AGG 0.622634 3:+97786187 None:intergenic
CTGAGAAGCTGACATCTGGT+GGG 0.629502 3:-97782992 MsG0380017551.01.T01:CDS
TTGTCACGCTTCTGTTTCCG+CGG 0.641384 3:-97785959 MsG0380017551.01.T01:CDS
ATCAGTTGATGTGGAGAGAG+TGG 0.646257 3:+97786074 None:intergenic
CGATGTTGTGGTCCAATACG+TGG 0.652164 3:-97786037 MsG0380017551.01.T01:CDS
GTCTTTGTTGGACCAAACCG+CGG 0.653891 3:+97785942 None:intergenic
AGTTGATGTGGAGAGAGTGG+TGG 0.659985 3:+97786077 None:intergenic
TACTTGGCCATTAGGCAGTG+TGG 0.667910 3:-97785992 MsG0380017551.01.T01:CDS
TGGGATCATTCATAAAGTGT+GGG 0.672024 3:-97782973 MsG0380017551.01.T01:CDS
GTTTAGTGTCACTTTACACG+CGG 0.717247 3:-97786166 MsG0380017551.01.T01:CDS
AAGTATCGATCAGATCACGC+CGG 0.740521 3:+97786010 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTAAATAAAAAATCATA+AGG - Chr3:97785955-97785974 MsG0380017551.01.T01:CDS 10.0%
!! AAAAATATTGTCTTTCTTAT+TGG - Chr3:97784370-97784389 MsG0380017551.01.T01:intron 15.0%
!! AAATAAAAAATAAAGAAGAG+AGG + Chr3:97783246-97783265 None:intergenic 15.0%
!! AGTTTAAATAAAAAATCACA+AGG + Chr3:97785246-97785265 None:intergenic 15.0%
!! ATAAGACAAAAAAAAAAATG+AGG + Chr3:97784861-97784880 None:intergenic 15.0%
!! ATGTTTATTATATATACTGT+TGG - Chr3:97784947-97784966 MsG0380017551.01.T01:intron 15.0%
!! TTATAATGAAGTTAATATTG+CGG - Chr3:97785703-97785722 MsG0380017551.01.T01:intron 15.0%
!! ACATTCATTTATCATATACA+TGG + Chr3:97784104-97784123 None:intergenic 20.0%
!! ATGTTTATGAATATAGTTAC+AGG + Chr3:97784723-97784742 None:intergenic 20.0%
!! GTAACTATATTCATAAACAT+AGG - Chr3:97784723-97784742 MsG0380017551.01.T01:intron 20.0%
!! TTAACATACAATTAGCAATT+TGG - Chr3:97785997-97786016 MsG0380017551.01.T01:CDS 20.0%
!!! ATGCAATCTGTTTAATTTTA+GGG - Chr3:97783306-97783325 MsG0380017551.01.T01:intron 20.0%
!!! TATGCAATCTGTTTAATTTT+AGG - Chr3:97783305-97783324 MsG0380017551.01.T01:intron 20.0%
!!! TTTTTTTTCTTCCTAAACTA+TGG - Chr3:97786260-97786279 MsG0380017551.01.T01:five_prime_UTR 20.0%
! AAAAAATGAGGATATCATTG+TGG + Chr3:97784849-97784868 None:intergenic 25.0%
! AAACTTCATTTGTTCAACTA+TGG - Chr3:97785261-97785280 MsG0380017551.01.T01:intron 25.0%
! AAACTTCATTTGTTCAACTA+TGG + Chr3:97785280-97785261 None:intergenic 25.0%
! AATACTTTACATAAACCACA+CGG - Chr3:97783445-97783464 MsG0380017551.01.T01:intron 25.0%
! AATTTGTAGTTAGCTCATTT+AGG + Chr3:97784917-97784936 None:intergenic 25.0%
! CAGTTATCCATAAGTTTATT+CGG - Chr3:97785836-97785855 MsG0380017551.01.T01:intron 25.0%
! CTGTCAATTAGAATTTAGAA+GGG - Chr3:97784222-97784241 MsG0380017551.01.T01:intron 25.0%
! TAGTTTACTGAGTGTTTAAT+TGG - Chr3:97783596-97783615 MsG0380017551.01.T01:intron 25.0%
! TCTAAATTCTAATTGACAGA+GGG + Chr3:97784221-97784240 None:intergenic 25.0%
! TCTGTCAATTAGAATTTAGA+AGG - Chr3:97784221-97784240 MsG0380017551.01.T01:intron 25.0%
! TGATGGTATATTAAAGTTGA+AGG - Chr3:97785674-97785693 MsG0380017551.01.T01:intron 25.0%
! TGTCAATTAGAATTTAGAAG+GGG - Chr3:97784223-97784242 MsG0380017551.01.T01:intron 25.0%
! TTCTAAATTCTAATTGACAG+AGG + Chr3:97784222-97784241 None:intergenic 25.0%
! TTTGCCAATGCAAAATAAAA+TGG - Chr3:97783528-97783547 MsG0380017551.01.T01:intron 25.0%
!! TAATTTGTCCAGATAAACTA+AGG - Chr3:97785117-97785136 MsG0380017551.01.T01:intron 25.0%
!!! GAATCCATTTTATTTTGCAT+TGG + Chr3:97783535-97783554 None:intergenic 25.0%
!!! TCAAACATGTGATTTTTAGT+CGG - Chr3:97783553-97783572 MsG0380017551.01.T01:intron 25.0%
!!! TCAATGTTCTAAAAATCAAC+TGG + Chr3:97785342-97785361 None:intergenic 25.0%
!!! TCTTATTTTCTGTTCAATGT+AGG - Chr3:97783272-97783291 MsG0380017551.01.T01:intron 25.0%
!!! TTTGTTCATTTTTGTACATG+CGG - Chr3:97784123-97784142 MsG0380017551.01.T01:intron 25.0%
AAACAGAAGCAAAAAAAGCA+GGG + Chr3:97784294-97784313 None:intergenic 30.0%
AAACCAATGTCTTAAGGTTT+GGG + Chr3:97783716-97783735 None:intergenic 30.0%
AATTTGGTCTACGAATTAAC+TGG - Chr3:97786013-97786032 MsG0380017551.01.T01:CDS 30.0%
ACCAAAACTCTCTTAAGTTT+AGG - Chr3:97785001-97785020 MsG0380017551.01.T01:intron 30.0%
AGAAAACATGAAATCCTAGA+AGG + Chr3:97785740-97785759 None:intergenic 30.0%
ATCTAAATTCTCGAAACTGA+AGG + Chr3:97785625-97785644 None:intergenic 30.0%
ATTAGGTACTAGTTGACATT+TGG - Chr3:97784493-97784512 MsG0380017551.01.T01:intron 30.0%
CATAAGAAAAGCAAACTCAA+AGG + Chr3:97785578-97785597 None:intergenic 30.0%
CCAAAACTCTCTTAAGTTTA+GGG - Chr3:97785002-97785021 MsG0380017551.01.T01:intron 30.0%
CTAAATTCTAATTGACAGAG+GGG + Chr3:97784220-97784239 None:intergenic 30.0%
GGGTTGTTCTGATAAATATA+GGG + Chr3:97784169-97784188 None:intergenic 30.0%
GTCTATCAGTTAGTTAACAA+GGG - Chr3:97785139-97785158 MsG0380017551.01.T01:intron 30.0%
TAAACCAATGTCTTAAGGTT+TGG + Chr3:97783717-97783736 None:intergenic 30.0%
TAAATTCTAATTGACAGAGG+GGG + Chr3:97784219-97784238 None:intergenic 30.0%
TAAGCAGTGAAGTAAAAACT+TGG - Chr3:97783407-97783426 MsG0380017551.01.T01:intron 30.0%
TGACTTATCTGCTATTGTTA+TGG - Chr3:97785773-97785792 MsG0380017551.01.T01:intron 30.0%
TTACAGGTGATGAATATGAT+GGG + Chr3:97784707-97784726 None:intergenic 30.0%
TTCTTCTTCTTCATGCTAAA+TGG - Chr3:97785384-97785403 MsG0380017551.01.T01:intron 30.0%
TTGATTCTATGCACAAAGTA+AGG - Chr3:97783209-97783228 MsG0380017551.01.T01:intron 30.0%
TTTGGGAGAAACAAAACATT+TGG - Chr3:97784311-97784330 MsG0380017551.01.T01:intron 30.0%
! ACGAAGATACAATTGACTTA+GGG + Chr3:97786190-97786209 None:intergenic 30.0%
! GATCTTTAACCTGAAAGTTT+TGG - Chr3:97784655-97784674 MsG0380017551.01.T01:intron 30.0%
! GTGCATAGAATCAATTTTGT+CGG + Chr3:97783203-97783222 None:intergenic 30.0%
! GTTAGTTTGATAGCATTAGA+AGG - Chr3:97784889-97784908 MsG0380017551.01.T01:intron 30.0%
! TACGAAGATACAATTGACTT+AGG + Chr3:97786191-97786210 None:intergenic 30.0%
! TAGGTCTTTTGTACTTTCTT+GGG - Chr3:97784452-97784471 MsG0380017551.01.T01:intron 30.0%
! TGCATAGAATCAATTTTGTC+GGG + Chr3:97783202-97783221 None:intergenic 30.0%
!! AACCTTAAGACATTGGTTTA+TGG - Chr3:97783717-97783736 MsG0380017551.01.T01:intron 30.0%
!! AACTTTCAGGTTAAAGATCT+AGG + Chr3:97784654-97784673 None:intergenic 30.0%
!! ACCTTAAGACATTGGTTTAT+GGG - Chr3:97783718-97783737 MsG0380017551.01.T01:intron 30.0%
!! GAAAAGTGCTAGAATTAAAC+TGG + Chr3:97783483-97783502 None:intergenic 30.0%
!! GGAATCATAGAAGTATCAAT+CGG - Chr3:97784514-97784533 MsG0380017551.01.T01:intron 30.0%
!! TGAGTTTGCTTTTCTTATGT+TGG - Chr3:97785579-97785598 MsG0380017551.01.T01:intron 30.0%
!!! AACTCAAAGGTTGATGTTTT+AGG + Chr3:97785565-97785584 None:intergenic 30.0%
!!! ACACTTTTTGGAACTTACTT+TGG - Chr3:97785532-97785551 MsG0380017551.01.T01:intron 30.0%
!!! ACTTTTTGGAACTTACTTTG+GGG - Chr3:97785534-97785553 MsG0380017551.01.T01:intron 30.0%
!!! CAAACATGTGATTTTTAGTC+GGG - Chr3:97783554-97783573 MsG0380017551.01.T01:intron 30.0%
!!! CACTTTTTGGAACTTACTTT+GGG - Chr3:97785533-97785552 MsG0380017551.01.T01:intron 30.0%
!!! TGCTTTTTTTGCTTCTGTTT+GGG - Chr3:97784294-97784313 MsG0380017551.01.T01:intron 30.0%
AAATTCTAATTGACAGAGGG+GGG + Chr3:97784218-97784237 None:intergenic 35.0%
AAGTCTCAAGAGCAACTATT+TGG + Chr3:97785453-97785472 None:intergenic 35.0%
ACATCTGATCCAAAACTTTC+AGG + Chr3:97784667-97784686 None:intergenic 35.0%
ACATGCACAAATAGATGTGA+TGG - Chr3:97785657-97785676 MsG0380017551.01.T01:intron 35.0%
ACCCATAAACCAATGTCTTA+AGG + Chr3:97783722-97783741 None:intergenic 35.0%
ACTAAACTTCGTTCTTGAGA+AGG + Chr3:97782912-97782931 None:intergenic 35.0%
AGTATGCTATGGATGTCTTA+GGG + Chr3:97784564-97784583 None:intergenic 35.0%
ATGGAAATATGCTCACATCA+TGG - Chr3:97785403-97785422 MsG0380017551.01.T01:intron 35.0%
ATGTCAACTAGTACCTAATC+AGG + Chr3:97784492-97784511 None:intergenic 35.0%
CAAACAGAAGCAAAAAAAGC+AGG + Chr3:97784295-97784314 None:intergenic 35.0%
CATCTTAACCCAAAACCTTA+AGG + Chr3:97783983-97784002 None:intergenic 35.0%
CTGATAGACCTTAGTTTATC+TGG + Chr3:97785128-97785147 None:intergenic 35.0%
GACACTACCGAATAAACTTA+TGG + Chr3:97785846-97785865 None:intergenic 35.0%
GCATATGCAGTTTCAATTCA+AGG - Chr3:97785877-97785896 MsG0380017551.01.T01:intron 35.0%
GGGGTTGTTCTGATAAATAT+AGG + Chr3:97784170-97784189 None:intergenic 35.0%
GGTCTATCAGTTAGTTAACA+AGG - Chr3:97785138-97785157 MsG0380017551.01.T01:intron 35.0%
GGTTGCTGAACTTAAACTTT+AGG - Chr3:97786034-97786053 MsG0380017551.01.T01:CDS 35.0%
GTATTGAGATAGCTCAATCA+AGG + Chr3:97784611-97784630 None:intergenic 35.0%
GTTACAGGTGATGAATATGA+TGG + Chr3:97784708-97784727 None:intergenic 35.0%
TACTGAGTGTTTAATTGGTC+CGG - Chr3:97783601-97783620 MsG0380017551.01.T01:intron 35.0%
TCCATAAATCCAATGCCTTA+AGG - Chr3:97783965-97783984 MsG0380017551.01.T01:intron 35.0%
TGGGATCATTCATAAAGTGT+GGG - Chr3:97786118-97786137 MsG0380017551.01.T01:CDS 35.0%
TGTCAACTAGTACCTAATCA+GGG + Chr3:97784491-97784510 None:intergenic 35.0%
TTGAGCTACATATTAGAGAG+AGG - Chr3:97783941-97783960 MsG0380017551.01.T01:intron 35.0%
TTGTTCAACAGTATGACATG+AGG + Chr3:97784749-97784768 None:intergenic 35.0%
! AAATCAACTGGTCATTGACT+TGG + Chr3:97785330-97785349 None:intergenic 35.0%
! AATCCAATGCCTTAAGGTTT+TGG - Chr3:97783971-97783990 MsG0380017551.01.T01:intron 35.0%
! ATCCAATGCCTTAAGGTTTT+GGG - Chr3:97783972-97783991 MsG0380017551.01.T01:intron 35.0%
! ATCTGAAACAGCCATAGTTT+AGG + Chr3:97786274-97786293 None:intergenic 35.0%
! CCCTAAACTTAAGAGAGTTT+TGG + Chr3:97785005-97785024 None:intergenic 35.0%
! CTAGGTCTTTTGTACTTTCT+TGG - Chr3:97784451-97784470 MsG0380017551.01.T01:intron 35.0%
! CTCAGACAAGTTTTTGATCT+GGG + Chr3:97786084-97786103 None:intergenic 35.0%
! CTTTTGTACTTTCTTGGGTA+TGG - Chr3:97784457-97784476 MsG0380017551.01.T01:intron 35.0%
! GAAAGTACAAAAGACCTAGT+TGG + Chr3:97784450-97784469 None:intergenic 35.0%
! GACAGTTTAAAGTTCCACAT+TGG - Chr3:97783904-97783923 MsG0380017551.01.T01:intron 35.0%
! GATACAATTGACTTAGGGTA+AGG + Chr3:97786185-97786204 None:intergenic 35.0%
! GCATAGAATCAATTTTGTCG+GGG + Chr3:97783201-97783220 None:intergenic 35.0%
! GGTTGACTATGTTATTTGCT+TGG + Chr3:97784633-97784652 None:intergenic 35.0%
! GTTTAAAGTTCCACATTGGA+TGG - Chr3:97783908-97783927 MsG0380017551.01.T01:intron 35.0%
! TCAGACAAGTTTTTGATCTG+GGG + Chr3:97786083-97786102 None:intergenic 35.0%
! TCTCAGACAAGTTTTTGATC+TGG + Chr3:97786085-97786104 None:intergenic 35.0%
! TGATGAATATGATGGGATAC+TGG + Chr3:97784700-97784719 None:intergenic 35.0%
! TTGGTGACAAACAACTAGTA+CGG + Chr3:97784986-97785005 None:intergenic 35.0%
!! ACCTTAAGGCATTGGATTTA+TGG + Chr3:97783969-97783988 None:intergenic 35.0%
!! CGATTTGTTATCTAGTGTTG+TGG - Chr3:97783373-97783392 MsG0380017551.01.T01:intron 35.0%
!!! CTGCTTTTTTTGCTTCTGTT+TGG - Chr3:97784293-97784312 MsG0380017551.01.T01:intron 35.0%
!!! TAAGGTTTTGGGTTAAGATG+TGG - Chr3:97783983-97784002 MsG0380017551.01.T01:intron 35.0%
AAAGTTCCACATTGGATGGA+AGG - Chr3:97783912-97783931 MsG0380017551.01.T01:intron 40.0%
AACCCAAAACCTTAAGGCAT+TGG + Chr3:97783977-97783996 None:intergenic 40.0%
AACTATGGCTCAATCGTAGT+TGG - Chr3:97785276-97785295 MsG0380017551.01.T01:intron 40.0%
AACTATGGCTCAATCGTAGT+TGG + Chr3:97785295-97785276 None:intergenic 40.0%
AATACCATTGTTGGGTCATG+AGG + Chr3:97783789-97783808 None:intergenic 40.0%
AATCGATCATGTCTATGCAC+TGG + Chr3:97783358-97783377 None:intergenic 40.0%
AATTCTAATTGACAGAGGGG+GGG + Chr3:97784217-97784236 None:intergenic 40.0%
ACAACAACCCTGATGTCAAA+TGG + Chr3:97785805-97785824 None:intergenic 40.0%
ACGTAGACTGTGAACATTTG+CGG + Chr3:97782822-97782841 None:intergenic 40.0%
ACTGAGTGTTTAATTGGTCC+GGG - Chr3:97783602-97783621 MsG0380017551.01.T01:intron 40.0%
ATACCATTGTTGGGTCATGA+GGG + Chr3:97783788-97783807 None:intergenic 40.0%
ATCAAAACATCTCTCCCTTG+AGG + Chr3:97783875-97783894 None:intergenic 40.0%
CATCCATAGCATACTCTATG+CGG - Chr3:97784569-97784588 MsG0380017551.01.T01:intron 40.0%
CTACAATAATCAACGGTGAC+AGG + Chr3:97783178-97783197 None:intergenic 40.0%
CTGTTCAATGTAGGCTTTCT+AGG - Chr3:97783281-97783300 MsG0380017551.01.T01:intron 40.0%
GAAGTTAATATTGCGGCACT+TGG - Chr3:97785710-97785729 MsG0380017551.01.T01:intron 40.0%
GAGGATATCATTGTGGTTGT+GGG + Chr3:97784842-97784861 None:intergenic 40.0%
GAGTATGCTATGGATGTCTT+AGG + Chr3:97784565-97784584 None:intergenic 40.0%
GTAAGAACAACCACACAAGT+CGG - Chr3:97783672-97783691 MsG0380017551.01.T01:intron 40.0%
GTACTTTCTTGGGTATGGAA+AGG - Chr3:97784462-97784481 MsG0380017551.01.T01:intron 40.0%
GTATGCTATGGATGTCTTAG+GGG + Chr3:97784563-97784582 None:intergenic 40.0%
GTGGGATCATTCATAAAGTG+TGG - Chr3:97786117-97786136 MsG0380017551.01.T01:CDS 40.0%
TAATCCCCACCAAGTCTAAT+CGG + Chr3:97783817-97783836 None:intergenic 40.0%
TAGGTCACACTTGAAGTGAA+GGG - Chr3:97786053-97786072 MsG0380017551.01.T01:CDS 40.0%
TATTAGAGCCCGATTAGACT+TGG - Chr3:97783805-97783824 MsG0380017551.01.T01:intron 40.0%
TCACCCAAACCTTAAGACAT+TGG - Chr3:97783710-97783729 MsG0380017551.01.T01:intron 40.0%
TCTCGAAACTGAAGGCAAAA+AGG + Chr3:97785617-97785636 None:intergenic 40.0%
TGAGGATATCATTGTGGTTG+TGG + Chr3:97784843-97784862 None:intergenic 40.0%
TGTGTGTGTGTGTAAACACT+TGG + Chr3:97785075-97785094 None:intergenic 40.0%
TTAGGTCACACTTGAAGTGA+AGG - Chr3:97786052-97786071 MsG0380017551.01.T01:CDS 40.0%
TTTAATTGGTCCGGGATGTT+GGG - Chr3:97783610-97783629 MsG0380017551.01.T01:intron 40.0%
TTTCCGCATAGAGTATGCTA+TGG + Chr3:97784575-97784594 None:intergenic 40.0%
! AAAAGTGTGTGACGTGTTGA+TGG + Chr3:97785520-97785539 None:intergenic 40.0%
! AGGCAAGTAGGTATGTTTTC+AGG + Chr3:97786152-97786171 None:intergenic 40.0%
! GGGTTGACTCATTGAGTTAA+AGG + Chr3:97782981-97783000 None:intergenic 40.0%
! TCAACACGTCACACACTTTT+TGG - Chr3:97785520-97785539 MsG0380017551.01.T01:intron 40.0%
! TTTAGAAGGGGTGCATTTCA+AGG - Chr3:97784235-97784254 MsG0380017551.01.T01:intron 40.0%
!! GATTGTGCCATTTGACATCA+GGG - Chr3:97785795-97785814 MsG0380017551.01.T01:intron 40.0%
!! GTTTAGTGTCACTTTACACG+CGG - Chr3:97782925-97782944 MsG0380017551.01.T01:CDS 40.0%
!! TAGGGTAAGGTTTTGTAGCA+AGG + Chr3:97786172-97786191 None:intergenic 40.0%
!! TGGACTAGTGAATTGCAAAC+TGG - Chr3:97785296-97785315 MsG0380017551.01.T01:intron 40.0%
!! TGGACTAGTGAATTGCAAAC+TGG + Chr3:97785315-97785296 None:intergenic 40.0%
!! TTTTTAGTCGGGTTTGCGTT+GGG - Chr3:97783565-97783584 MsG0380017551.01.T01:intron 40.0%
!!! ATTTTTAGTCGGGTTTGCGT+TGG - Chr3:97783564-97783583 MsG0380017551.01.T01:intron 40.0%
!!! GTACACATTAGCTGGTTTTC+AGG + Chr3:97785037-97785056 None:intergenic 40.0%
AAGCACCTAGAGTCATGTGT+TGG + Chr3:97784080-97784099 None:intergenic 45.0%
AATCCCCACCAAGTCTAATC+GGG + Chr3:97783816-97783835 None:intergenic 45.0%
ATGGAAAGGACTCCCTGATT+AGG - Chr3:97784476-97784495 MsG0380017551.01.T01:intron 45.0%
ATGGATGTCTTAGGGGAAAC+TGG + Chr3:97784556-97784575 None:intergenic 45.0%
ATTCTAATTGACAGAGGGGG+GGG + Chr3:97784216-97784235 None:intergenic 45.0%
CTGATCGATACTTGGCCATT+AGG - Chr3:97783091-97783110 MsG0380017551.01.T01:intron 45.0%
GAGCAACCAAACAAGTGAGT+TGG + Chr3:97784012-97784031 None:intergenic 45.0%
GCTAATGTGTACATCAGTGC+TGG - Chr3:97785045-97785064 MsG0380017551.01.T01:intron 45.0%
GTCGGGGCTACAATAATCAA+CGG + Chr3:97783185-97783204 None:intergenic 45.0%
GTGCTGAAAAGCTTCCAACT+AGG - Chr3:97784433-97784452 MsG0380017551.01.T01:intron 45.0%
GTTTAATTGGTCCGGGATGT+TGG - Chr3:97783609-97783628 MsG0380017551.01.T01:intron 45.0%
TACCATTGTTGGGTCATGAG+GGG + Chr3:97783787-97783806 None:intergenic 45.0%
TCTACGTGTCAGTCTGTCAA+TGG - Chr3:97782835-97782854 MsG0380017551.01.T01:three_prime_UTR 45.0%
TGAGTAACCACACTGCCTAA+TGG + Chr3:97783109-97783128 None:intergenic 45.0%
TGGAGACATTTACTACCGTG+TGG + Chr3:97783463-97783482 None:intergenic 45.0%
TGGTGTCCAACTCACTTGTT+TGG - Chr3:97784003-97784022 MsG0380017551.01.T01:intron 45.0%
TGTGACGATCCAATCCAGTT+AGG - Chr3:97784041-97784060 MsG0380017551.01.T01:intron 45.0%
TGTGATGATCGAACCTAGTG+AGG + Chr3:97783648-97783667 None:intergenic 45.0%
TTAAGGTTTGGGTGAAGACG+TGG + Chr3:97783705-97783724 None:intergenic 45.0%
TTAGGCAGTGTGGTTACTCA+AGG - Chr3:97783109-97783128 MsG0380017551.01.T01:intron 45.0%
TTGTCTGAGAAGCTGACATC+TGG - Chr3:97786095-97786114 MsG0380017551.01.T01:CDS 45.0%
! ACCACAACATCGACGTTTTC+CGG + Chr3:97783046-97783065 None:intergenic 45.0%
! ACCTTGTTTGCTCACAGATG+CGG - Chr3:97783845-97783864 MsG0380017551.01.T01:intron 45.0%
! ACTCGTCCGGTTTGAAAAAG+AGG + Chr3:97782951-97782970 None:intergenic 45.0%
! ACTGGATTGGATCGTCACAT+TGG + Chr3:97784040-97784059 None:intergenic 45.0%
! ATCAGTTGATGTGGAGAGAG+TGG + Chr3:97783020-97783039 None:intergenic 45.0%
! CGGGCTCTAATACCATTGTT+GGG + Chr3:97783797-97783816 None:intergenic 45.0%
! GCACTGATGTACACATTAGC+TGG + Chr3:97785045-97785064 None:intergenic 45.0%
! TCGGGCTCTAATACCATTGT+TGG + Chr3:97783798-97783817 None:intergenic 45.0%
!! AAGTATCGATCAGATCACGC+CGG + Chr3:97783084-97783103 None:intergenic 45.0%
!! ACTGGTCATTGACTTGGTGA+AGG + Chr3:97785324-97785343 None:intergenic 45.0%
!! GATTAGACTTGGTGGGGATT+AGG - Chr3:97783816-97783835 MsG0380017551.01.T01:intron 45.0%
!! GGATTGTGCCATTTGACATC+AGG - Chr3:97785794-97785813 MsG0380017551.01.T01:intron 45.0%
!! GGTTTTGTAGCAAGGCAAGT+AGG + Chr3:97786164-97786183 None:intergenic 45.0%
AATCTCCCAAACCATGCTCG+AGG - Chr3:97784777-97784796 MsG0380017551.01.T01:intron 50.0%
ACTTCGTTCTTGAGAAGGCG+AGG + Chr3:97782907-97782926 None:intergenic 50.0%
AGGGGTAGTTTGACCGTACA+GGG - Chr3:97784797-97784816 MsG0380017551.01.T01:intron 50.0%
ATCTCCCAAACCATGCTCGA+GGG - Chr3:97784778-97784797 MsG0380017551.01.T01:intron 50.0%
CCACATTGGATGGAAGGTTG+AGG - Chr3:97783918-97783937 MsG0380017551.01.T01:intron 50.0%
CCTCAACCTTCCATCCAATG+TGG + Chr3:97783921-97783940 None:intergenic 50.0%
CGATGTTGTGGTCCAATACG+TGG - Chr3:97783054-97783073 MsG0380017551.01.T01:intron 50.0%
CGGCACTTGGTAAACCTTCT+AGG - Chr3:97785723-97785742 MsG0380017551.01.T01:intron 50.0%
CTCACTTGTGTGGTTGCTCT+TGG - Chr3:97783746-97783765 MsG0380017551.01.T01:intron 50.0%
CTGAGAAGCTGACATCTGGT+GGG - Chr3:97786099-97786118 MsG0380017551.01.T01:CDS 50.0%
GAACAACCACACAAGTCGGT+TGG - Chr3:97783676-97783695 MsG0380017551.01.T01:intron 50.0%
GAAGAGACGAAGCGTAGGAA+GGG + Chr3:97782867-97782886 None:intergenic 50.0%
GAGCAACCACACAAGTGAGT+CGG + Chr3:97783745-97783764 None:intergenic 50.0%
GATTGGGAGCCTAACTGGAT+TGG + Chr3:97784053-97784072 None:intergenic 50.0%
GCAATAAGGCAAGCCTCACT+AGG - Chr3:97783632-97783651 MsG0380017551.01.T01:intron 50.0%
GGCGTGATCTGATCGATACT+TGG - Chr3:97783083-97783102 MsG0380017551.01.T01:intron 50.0%
GGTGACAGGATCGTCTTTGT+TGG + Chr3:97783164-97783183 None:intergenic 50.0%
GTCTTTGTTGGACCAAACCG+CGG + Chr3:97783152-97783171 None:intergenic 50.0%
TACTTGGCCATTAGGCAGTG+TGG - Chr3:97783099-97783118 MsG0380017551.01.T01:intron 50.0%
TAGAGCCCGATTAGACTTGG+TGG - Chr3:97783808-97783827 MsG0380017551.01.T01:intron 50.0%
TAGTTTGACCGTACAGGGCA+GGG - Chr3:97784802-97784821 MsG0380017551.01.T01:intron 50.0%
TCCAGTTAGGCTCCCAATCA+CGG - Chr3:97784054-97784073 MsG0380017551.01.T01:intron 50.0%
TCCGCATCTGTGAGCAAACA+AGG + Chr3:97783849-97783868 None:intergenic 50.0%
TCTGAGAAGCTGACATCTGG+TGG - Chr3:97786098-97786117 MsG0380017551.01.T01:CDS 50.0%
TGAAGAGACGAAGCGTAGGA+AGG + Chr3:97782868-97782887 None:intergenic 50.0%
TTGAGAAGGCGAGGTACGAA+CGG + Chr3:97782898-97782917 None:intergenic 50.0%
TTGTCACGCTTCTGTTTCCG+CGG - Chr3:97783132-97783151 MsG0380017551.01.T01:intron 50.0%
! AGAGCCCGATTAGACTTGGT+GGG - Chr3:97783809-97783828 MsG0380017551.01.T01:intron 50.0%
! AGTCATGTGTTGGCCGTGAT+TGG + Chr3:97784070-97784089 None:intergenic 50.0%
! AGTTGATGTGGAGAGAGTGG+TGG + Chr3:97783017-97783036 None:intergenic 50.0%
! GTCATGTGTTGGCCGTGATT+GGG + Chr3:97784069-97784088 None:intergenic 50.0%
! TGCCTTATTGCCCAACATCC+CGG + Chr3:97783623-97783642 None:intergenic 50.0%
! TGTGGAGAGAGTGGTGGAAT+CGG + Chr3:97783011-97783030 None:intergenic 50.0%
! TTCCGGCGAATCAGTTGATG+TGG + Chr3:97783029-97783048 None:intergenic 50.0%
!! CTCCACATCAACTGATTCGC+CGG - Chr3:97783024-97783043 MsG0380017551.01.T01:CDS 50.0%
!! TAAAGGTGAGCTGACTCGTC+CGG + Chr3:97782964-97782983 None:intergenic 50.0%
!!! ACGCGGCCTCTTTTTCAAAC+CGG - Chr3:97782942-97782961 MsG0380017551.01.T01:CDS 50.0%
ACAGATGCGGAGAGCCTCAA+GGG - Chr3:97783858-97783877 MsG0380017551.01.T01:intron 55.0%
ACGCTTCTGTTTCCGCGGTT+TGG - Chr3:97783137-97783156 MsG0380017551.01.T01:intron 55.0%
ACTACCCCTCGAGCATGGTT+TGG + Chr3:97784786-97784805 None:intergenic 55.0%
AGGGGACTAAGGGAGAGAGT+GGG + Chr3:97784190-97784209 None:intergenic 55.0%
ATGGGTCCGACTCACTTGTG+TGG - Chr3:97783736-97783755 MsG0380017551.01.T01:intron 55.0%
CACGGCCAACACATGACTCT+AGG - Chr3:97784072-97784091 MsG0380017551.01.T01:intron 55.0%
CATGAGGGGAGTCTAGGCAT+TGG + Chr3:97783773-97783792 None:intergenic 55.0%
CTACCCCTCGAGCATGGTTT+GGG + Chr3:97784785-97784804 None:intergenic 55.0%
CTCCCCTCATGACCCAACAA+TGG - Chr3:97783782-97783801 MsG0380017551.01.T01:intron 55.0%
GAGGGGTAGTTTGACCGTAC+AGG - Chr3:97784796-97784815 MsG0380017551.01.T01:intron 55.0%
GCCGGAAAACGTCGATGTTG+TGG - Chr3:97783042-97783061 MsG0380017551.01.T01:intron 55.0%
GGGTTGAAGAGACGAAGCGT+AGG + Chr3:97782872-97782891 None:intergenic 55.0%
GGTTGTGGGTATGTCTCTCG+AGG + Chr3:97784828-97784847 None:intergenic 55.0%
GTAGTTTGACCGTACAGGGC+AGG - Chr3:97784801-97784820 MsG0380017551.01.T01:intron 55.0%
GTCAAACTACCCCTCGAGCA+TGG + Chr3:97784791-97784810 None:intergenic 55.0%
GTCCGGGATGTTGGGCAATA+AGG - Chr3:97783618-97783637 MsG0380017551.01.T01:intron 55.0%
TCTCCCAAACCATGCTCGAG+GGG - Chr3:97784779-97784798 MsG0380017551.01.T01:intron 55.0%
TGAGAAGGCGAGGTACGAAC+GGG + Chr3:97782897-97782916 None:intergenic 55.0%
TGGTCCAATACGTGGTGCTC+CGG - Chr3:97783062-97783081 MsG0380017551.01.T01:intron 55.0%
TTGGGTCATGAGGGGAGTCT+AGG + Chr3:97783779-97783798 None:intergenic 55.0%
!! GAGCCCGATTAGACTTGGTG+GGG - Chr3:97783810-97783829 MsG0380017551.01.T01:intron 55.0%
!! TGGTGTCCAACCGACTTGTG+TGG + Chr3:97783685-97783704 None:intergenic 55.0%
AAGGCGAGGTACGAACGGGA+GGG + Chr3:97782893-97782912 None:intergenic 60.0%
CACAGATGCGGAGAGCCTCA+AGG - Chr3:97783857-97783876 MsG0380017551.01.T01:intron 60.0%
CTAATTGACAGAGGGGGGGG+AGG + Chr3:97784213-97784232 None:intergenic 60.0%
GAGGGGACTAAGGGAGAGAG+TGG + Chr3:97784191-97784210 None:intergenic 60.0%
GCCGTGATTGGGAGCCTAAC+TGG + Chr3:97784058-97784077 None:intergenic 60.0%
GGGGACTAAGGGAGAGAGTG+GGG + Chr3:97784189-97784208 None:intergenic 60.0%
! AGTGGTGGAATCGGTGGAGG+CGG + Chr3:97783002-97783021 None:intergenic 60.0%
! GAGAGTGGTGGAATCGGTGG+AGG + Chr3:97783005-97783024 None:intergenic 60.0%
! GGAGAGAGTGGTGGAATCGG+TGG + Chr3:97783008-97783027 None:intergenic 60.0%
AGGCGAGGTACGAACGGGAG+GGG + Chr3:97782892-97782911 None:intergenic 65.0%
ATTGACAGAGGGGGGGGAGG+AGG + Chr3:97784210-97784229 None:intergenic 65.0%
GAAGGCGAGGTACGAACGGG+AGG + Chr3:97782894-97782913 None:intergenic 65.0%
TCTCGAGGCCCTGCCCTGTA+CGG + Chr3:97784813-97784832 None:intergenic 65.0%
TTGACAGAGGGGGGGGAGGA+GGG + Chr3:97784209-97784228 None:intergenic 65.0%
! CACGCCGGAGCACCACGTAT+TGG + Chr3:97783069-97783088 None:intergenic 65.0%
! GTGGTGGAATCGGTGGAGGC+GGG + Chr3:97783001-97783020 None:intergenic 65.0%
GGGGGGGAGGAGGGGACTAA+GGG + Chr3:97784200-97784219 None:intergenic 70.0%
TGACAGAGGGGGGGGAGGAG+GGG + Chr3:97784208-97784227 None:intergenic 70.0%
GGGGGGGGAGGAGGGGACTA+AGG + Chr3:97784201-97784220 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 97782818 97786295 97782818 ID=MsG0380017551.01;Name=MsG0380017551.01
Chr3 mRNA 97782818 97786295 97782818 ID=MsG0380017551.01.T01;Parent=MsG0380017551.01;Name=MsG0380017551.01.T01;_AED=0.46;_eAED=0.46;_QI=36|1|1|1|1|1|2|57|184
Chr3 exon 97782818 97783057 97782818 ID=MsG0380017551.01.T01:exon:21367;Parent=MsG0380017551.01.T01
Chr3 exon 97785888 97786295 97785888 ID=MsG0380017551.01.T01:exon:21366;Parent=MsG0380017551.01.T01
Chr3 five_prime_UTR 97786260 97786295 97786260 ID=MsG0380017551.01.T01:five_prime_utr;Parent=MsG0380017551.01.T01
Chr3 CDS 97785888 97786259 97785888 ID=MsG0380017551.01.T01:cds;Parent=MsG0380017551.01.T01
Chr3 CDS 97782875 97783057 97782875 ID=MsG0380017551.01.T01:cds;Parent=MsG0380017551.01.T01
Chr3 three_prime_UTR 97782818 97782874 97782818 ID=MsG0380017551.01.T01:three_prime_utr;Parent=MsG0380017551.01.T01
Gene Sequence

>MsG0380017551.01.T01

ATGGCTTACACCCTTCCTACGCTTCGTCTCTTCAACCCCTCCCGTTCGTACCTCGCCTTCTCAAGAACGAAGTTTAGTGTCACTTTACACGCGGCCTCTTTTTCAAACCGGACGAGTCAGCTCACCTTTAACTCAATGAGTCAACCCGCCTCCACCGATTCCACCACTCTCTCCACATCAACTGATTCGCCGGAAAACGTCGATGTTGTGGTCCAATACGTGGTGCTCCGGCGTGATCTGATCGATACTTGGCCATTAGGCAGTGTGGTTACTCAAGGTTGTCACGCTTCTGTTTCCGCGGTTTGGTCCAACAAAGACGATCCTGTCACCGTTGATTATTGTAGCCCCGACAAAATTGATTCTATGCACAAAGTCACACTTGAAGTGAAGGGAGAACCCCAGATCAAAAACTTGTCTGAGAAGCTGACATCTGGTGGGATCATTCATAAAGTGTGGGTTGAGCAACCTGAAAACATACCTACTTGCCTTGCTACAAAACCTTACCCTAAGTCAATTGTATCTTCGTATTTTAAGAAGTTGAAACTCTGCAAGTGA

Protein sequence

>MsG0380017551.01.T01

MAYTLPTLRLFNPSRSYLAFSRTKFSVTLHAASFSNRTSQLTFNSMSQPASTDSTTLSTSTDSPENVDVVVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWSNKDDPVTVDYCSPDKIDSMHKVTLEVKGEPQIKNLSEKLTSGGIIHKVWVEQPENIPTCLATKPYPKSIVSSYFKKLKLCK*