AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042698.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042698.01.T01 MTR_8g019660 95.087 346 10 3 1 344 61 401 0.0 656
MsG0880042698.01.T01 MTR_3g104880 47.186 231 97 7 118 342 160 371 8.52e-38 141
MsG0880042698.01.T01 MTR_4g125620 38.177 351 129 15 7 344 65 340 3.37e-26 108
MsG0880042698.01.T01 MTR_1g015275 39.161 286 116 8 64 334 123 365 3.69e-21 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042698.01.T01 AT3G13980 51.095 274 85 10 75 343 123 352 1.24e-59 199
MsG0880042698.01.T01 AT1G54200 46.763 278 124 7 68 343 110 365 1.55e-52 181
MsG0880042698.01.T01 AT3G42800 31.560 282 150 13 67 343 93 336 9.37e-19 87.8

Find 61 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGATAATTTATCAGTAAT+TGG 0.114503 8:+12807568 MsG0880042698.01.T01:CDS
TTCAATCCCAATAGAGTTAT+TGG 0.119420 8:+12807637 MsG0880042698.01.T01:CDS
ATGTGATGCAAGAGAGTTTA+AGG 0.174902 8:+12807413 MsG0880042698.01.T01:CDS
ACACATTGCCACACAATATC+TGG 0.184668 8:-12809909 None:intergenic
TCAGAAACACTTGTTCTAAT+TGG 0.223959 8:-12806866 None:intergenic
ACCATTTCCAATAACTCTAT+TGG 0.241032 8:-12807644 None:intergenic
CATACAAAATCATCATTAAA+TGG 0.263569 8:-12808282 None:intergenic
AACATTGATTCATTTCAATA+TGG 0.291124 8:+12806896 MsG0880042698.01.T01:CDS
AACTACTACAAATTCTGTTT+TGG 0.296788 8:+12807159 MsG0880042698.01.T01:CDS
GAACAGAATGGTTATGGTTA+TGG 0.298193 8:-12806943 None:intergenic
TCTGATTCAGAATCATTCTA+TGG 0.300272 8:+12806827 MsG0880042698.01.T01:CDS
ACACTTGTTCTAATTGGTTT+TGG 0.300946 8:-12806860 None:intergenic
CCCAATAGAGTTATTGGAAA+TGG 0.315105 8:+12807643 MsG0880042698.01.T01:CDS
TATGGTTATGGTTATAGTTA+TGG 0.322181 8:-12806931 None:intergenic
CCATTTCCAATAACTCTATT+GGG 0.327955 8:-12807643 None:intergenic
AAGCAAGAAAGGTGGAGAAT+TGG 0.331562 8:+12806669 MsG0880042698.01.T01:CDS
AAATGAGTAGTTTCATAAAC+TGG 0.342032 8:-12807616 None:intergenic
CTATACTTGTTCATGGCAAT+TGG 0.346258 8:+12808379 MsG0880042698.01.T01:CDS
TGGATAATTTATCAGTAATT+GGG 0.347307 8:+12807569 MsG0880042698.01.T01:CDS
GAGTTTGAACAGAATGGTTA+TGG 0.352789 8:-12806949 None:intergenic
TATTGAAATGAATCAATGTT+TGG 0.355365 8:-12806893 None:intergenic
TGTCACGGTGACATTAAATC+TGG 0.362678 8:+12809831 MsG0880042698.01.T01:CDS
TCATCAACAATTACACTAAC+AGG 0.363408 8:-12807295 None:intergenic
AGAATTTCTATACTTGTTCA+TGG 0.375809 8:+12808372 MsG0880042698.01.T01:CDS
CACAACACATACAACACATC+TGG 0.376773 8:-12809882 None:intergenic
ATACAAAATTCTCAAAGCTT+TGG 0.378204 8:-12807011 None:intergenic
AGAGTAGTAGTGAAGAATTA+AGG 0.394514 8:+12807386 MsG0880042698.01.T01:CDS
GAATTTGCATGAAGGTGAAA+AGG 0.410666 8:+12807342 MsG0880042698.01.T01:CDS
TAGTTCTGATTTGTTTGAAT+TGG 0.413467 8:+12807549 MsG0880042698.01.T01:CDS
TATCAGTAATTGGGATTGAA+AGG 0.444002 8:+12807578 MsG0880042698.01.T01:CDS
TTAGCACCTGATCTTGATGA+AGG 0.453605 8:-12807253 None:intergenic
GGCAATTGGCAAGAGAAAAG+AGG 0.475396 8:+12808393 MsG0880042698.01.T01:CDS
AAAACTCCTTCATCAAGATC+AGG 0.481984 8:+12807247 MsG0880042698.01.T01:CDS
TCTTCAGAATCAAGTTCAGC+TGG 0.492878 8:+12806791 MsG0880042698.01.T01:CDS
AATTTGCATGAAGGTGAAAA+GGG 0.494062 8:+12807343 MsG0880042698.01.T01:CDS
AAGGGTTCTTCAATCTATGA+TGG 0.496294 8:+12807361 MsG0880042698.01.T01:CDS
AAACTTCAGAAAAGCAAGAA+AGG 0.514735 8:+12806658 MsG0880042698.01.T01:CDS
CACATTGCCACACAATATCT+GGG 0.523912 8:-12809908 None:intergenic
GAAGATGAAGTTGAAAGCAA+AGG 0.530891 8:+12808348 MsG0880042698.01.T01:CDS
TGCAAATTCTTGTGTCCACA+AGG 0.543709 8:-12807328 None:intergenic
TGTGATGCAAGAGAGTTTAA+GGG 0.547284 8:+12807414 MsG0880042698.01.T01:CDS
GATGAAGATGAAGATGATGA+TGG 0.547702 8:+12807514 MsG0880042698.01.T01:CDS
CACAAAGGTGGTGTGTTGTG+TGG 0.552306 8:+12809858 MsG0880042698.01.T01:CDS
TGGAATGAGAAAGTTGTGAA+TGG 0.552681 8:+12806689 MsG0880042698.01.T01:CDS
GCAATTGGCAAGAGAAAAGA+GGG 0.561834 8:+12808394 MsG0880042698.01.T01:CDS
ACAACACATACAACACATCT+GGG 0.574986 8:-12809881 None:intergenic
GTCACGGTGACATTAAATCT+GGG 0.576068 8:+12809832 MsG0880042698.01.T01:CDS
AGAAGATGAACTTGAATGCA+TGG 0.580776 8:-12806771 None:intergenic
CACAACACACCACCTTTGTG+TGG 0.581623 8:-12809855 None:intergenic
TCAGAATCAAGTTCAGCTGG+TGG 0.600576 8:+12806794 MsG0880042698.01.T01:CDS
ATTAAATCTGGGCCACACAA+AGG 0.629925 8:+12809843 MsG0880042698.01.T01:CDS
CTTCAGAAAAGCAAGAAAGG+TGG 0.635352 8:+12806661 MsG0880042698.01.T01:CDS
AAATCTGGGCCACACAAAGG+TGG 0.648147 8:+12809846 MsG0880042698.01.T01:CDS
GATGTGTTGTATGTGTTGTG+TGG 0.649143 8:+12809885 MsG0880042698.01.T01:CDS
ACAAAGCAACCTATTTCACC+TGG 0.653006 8:+12807049 MsG0880042698.01.T01:CDS
GTGTGGCAATGTGTGTTGTG+TGG 0.655397 8:+12809918 MsG0880042698.01.T01:CDS
GATGAAGATTGTAGACCTTG+TGG 0.657954 8:+12807313 MsG0880042698.01.T01:CDS
GGACACAAGAATTTGCATGA+AGG 0.670978 8:+12807334 MsG0880042698.01.T01:CDS
TGTGTGGCCCAGATATTGTG+TGG 0.699295 8:+12809901 MsG0880042698.01.T01:CDS
ACTTGTGTGACATTATGTCA+CGG 0.721234 8:+12809816 MsG0880042698.01.T01:CDS
CAGGTGCTAAAAGATCAGTG+AGG 0.837686 8:+12807266 MsG0880042698.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATAATATTTTATTAAAA+GGG - Chr8:12809587-12809606 None:intergenic 0.0%
!!! TTTTATAATATTTTATTAAA+AGG - Chr8:12809588-12809607 None:intergenic 0.0%
!!! TTTAATTTTAGAGAATTTAA+TGG + Chr8:12807703-12807722 MsG0880042698.01.T01:intron 10.0%
!! AAAAGAAAAACATAGTAAAA+GGG - Chr8:12809028-12809047 None:intergenic 15.0%
!! AAGATTGTTATAGTTAATTA+AGG - Chr8:12809669-12809688 None:intergenic 15.0%
!! AGATTGTTATAGTTAATTAA+GGG - Chr8:12809668-12809687 None:intergenic 15.0%
!! ATTAAAATCTCATATGATTA+GGG - Chr8:12808228-12808247 None:intergenic 15.0%
!! ATTATAAAATTAGAATCTGT+TGG + Chr8:12809599-12809618 MsG0880042698.01.T01:intron 15.0%
!! TAATACAATTGAAAAAGAAA+AGG - Chr8:12807830-12807849 None:intergenic 15.0%
!! TAATATATATTGAACTGATT+TGG - Chr8:12809003-12809022 None:intergenic 15.0%
!! TTTAGTAAAATTATAGTACT+TGG + Chr8:12808615-12808634 MsG0880042698.01.T01:intron 15.0%
!!! AAAAAAAAACAGCTTTATAT+AGG + Chr8:12809219-12809238 MsG0880042698.01.T01:intron 15.0%
!!! AAAAAAAACAGCTTTATATA+GGG + Chr8:12809220-12809239 MsG0880042698.01.T01:intron 15.0%
!!! AATATATATTGAACTGATTT+GGG - Chr8:12809002-12809021 None:intergenic 15.0%
!!! AATCATTTTTTAACATTCTA+AGG - Chr8:12808555-12808574 None:intergenic 15.0%
!!! ATGTAATTTTGAGAAAATAT+GGG + Chr8:12807673-12807692 MsG0880042698.01.T01:intron 15.0%
!!! ATTATATTTTCTTTTATGGT+TGG + Chr8:12807925-12807944 MsG0880042698.01.T01:intron 15.0%
!!! GAAATTTATTAGTTTTTGTA+AGG - Chr8:12809450-12809469 None:intergenic 15.0%
!!! TAACTATAACAATCTTTTAA+TGG + Chr8:12809673-12809692 MsG0880042698.01.T01:intron 15.0%
!!! TATGTAATTTTGAGAAAATA+TGG + Chr8:12807672-12807691 MsG0880042698.01.T01:intron 15.0%
!!! TCTTTTTCAATTGTATTATA+TGG + Chr8:12807832-12807851 MsG0880042698.01.T01:intron 15.0%
!!! TGGTATTATATTTTCTTTTA+TGG + Chr8:12807921-12807940 MsG0880042698.01.T01:intron 15.0%
!!! TTTTGTAAGGAATAATAAAA+GGG - Chr8:12809437-12809456 None:intergenic 15.0%
!!! TTTTTGTAAGGAATAATAAA+AGG - Chr8:12809438-12809457 None:intergenic 15.0%
!! AATAAAGCAAGAGATATATT+AGG - Chr8:12809488-12809507 None:intergenic 20.0%
!! AATGAGAAAGAAAAAAAGTT+AGG - Chr8:12809069-12809088 None:intergenic 20.0%
!! ATGAGAAAGAAAAAAAGTTA+GGG - Chr8:12809068-12809087 None:intergenic 20.0%
!! CAAAAGAAAAACATAGTAAA+AGG - Chr8:12809029-12809048 None:intergenic 20.0%
!! CATACAAAATCATCATTAAA+TGG - Chr8:12808285-12808304 None:intergenic 20.0%
!! GATTAAAATCTCATATGATT+AGG - Chr8:12808229-12808248 None:intergenic 20.0%
!! TATTGAAATGAATCAATGTT+TGG - Chr8:12806896-12806915 None:intergenic 20.0%
!! TCTAAGGAATAAAACAAAAA+AGG - Chr8:12808539-12808558 None:intergenic 20.0%
!! TGGATAATTTATCAGTAATT+GGG + Chr8:12807569-12807588 MsG0880042698.01.T01:CDS 20.0%
!! TGTGAATATGTAAAATTTCT+AGG - Chr8:12808014-12808033 None:intergenic 20.0%
!! TTGGATAATTTATCAGTAAT+TGG + Chr8:12807568-12807587 MsG0880042698.01.T01:CDS 20.0%
!! TTTACATCTGATAATAAGAT+GGG + Chr8:12807734-12807753 MsG0880042698.01.T01:intron 20.0%
!!! AACATTGATTCATTTCAATA+TGG + Chr8:12806896-12806915 MsG0880042698.01.T01:CDS 20.0%
!!! GAGATATATTAGGTTTTTTT+TGG - Chr8:12809478-12809497 None:intergenic 20.0%
!!! TGAAAAGTAAATGACAATTT+TGG - Chr8:12809314-12809333 None:intergenic 20.0%
!!! TGATGGTATTTTTGATTTTT+TGG - Chr8:12807125-12807144 None:intergenic 20.0%
!!! TGTAATTTTGAGAAAATATG+GGG + Chr8:12807674-12807693 MsG0880042698.01.T01:intron 20.0%
!!! TGTTTTTATAGTACTATTCA+TGG + Chr8:12807901-12807920 MsG0880042698.01.T01:intron 20.0%
! AAATGAGTAGTTTCATAAAC+TGG - Chr8:12807619-12807638 None:intergenic 25.0%
! AGAATTTCTATACTTGTTCA+TGG + Chr8:12808372-12808391 MsG0880042698.01.T01:CDS 25.0%
! ATACAAAATTCTCAAAGCTT+TGG - Chr8:12807014-12807033 None:intergenic 25.0%
! ATCAAACTGTTATGATTTAG+TGG - Chr8:12809626-12809645 None:intergenic 25.0%
! CAAAAACCAAAAAATGAGAA+TGG + Chr8:12806971-12806990 MsG0880042698.01.T01:CDS 25.0%
! CATTATCTCGAATCTAATAA+AGG + Chr8:12809250-12809269 MsG0880042698.01.T01:intron 25.0%
! CTAAATTCTTGATGTCAAAT+TGG + Chr8:12808752-12808771 MsG0880042698.01.T01:intron 25.0%
! CTATATATCTCATACTATGA+GGG + Chr8:12809193-12809212 MsG0880042698.01.T01:intron 25.0%
! GTTTACATCTGATAATAAGA+TGG + Chr8:12807733-12807752 MsG0880042698.01.T01:intron 25.0%
! TATATATCTCATACTATGAG+GGG + Chr8:12809194-12809213 MsG0880042698.01.T01:intron 25.0%
! TATGGTTATGGTTATAGTTA+TGG - Chr8:12806934-12806953 None:intergenic 25.0%
! TCTTTGATGAAATAGAGTTA+AGG + Chr8:12809105-12809124 MsG0880042698.01.T01:intron 25.0%
! TTAACTCTATTTCATCAAAG+AGG - Chr8:12809106-12809125 None:intergenic 25.0%
! TTACATCTGATAATAAGATG+GGG + Chr8:12807735-12807754 MsG0880042698.01.T01:intron 25.0%
! TTTAGAGAATTTAATGGTGT+GGG + Chr8:12807709-12807728 MsG0880042698.01.T01:intron 25.0%
!! AACTACTACAAATTCTGTTT+TGG + Chr8:12807159-12807178 MsG0880042698.01.T01:CDS 25.0%
!! GATGATTTTGTATGTGAAAT+GGG + Chr8:12808291-12808310 MsG0880042698.01.T01:CDS 25.0%
!! TGATGATTTTGTATGTGAAA+TGG + Chr8:12808290-12808309 MsG0880042698.01.T01:CDS 25.0%
!!! AAAGCTTTGAGAATTTTGTA+TGG + Chr8:12807013-12807032 MsG0880042698.01.T01:CDS 25.0%
!!! AATTCACTTTTCAATTCTAG+TGG + Chr8:12807094-12807113 MsG0880042698.01.T01:CDS 25.0%
!!! TAGTTCTGATTTGTTTGAAT+TGG + Chr8:12807549-12807568 MsG0880042698.01.T01:CDS 25.0%
!!! TCTTTAGTTTCTAAGACAAA+AGG + Chr8:12809170-12809189 MsG0880042698.01.T01:intron 25.0%
!!! TTTTAGAGAATTTAATGGTG+TGG + Chr8:12807708-12807727 MsG0880042698.01.T01:intron 25.0%
AAAAGTTGAGATGTATAGCA+TGG + Chr8:12808690-12808709 MsG0880042698.01.T01:intron 30.0%
AAACTTCAGAAAAGCAAGAA+AGG + Chr8:12806658-12806677 MsG0880042698.01.T01:CDS 30.0%
AATTTGCATGAAGGTGAAAA+GGG + Chr8:12807343-12807362 MsG0880042698.01.T01:CDS 30.0%
ACCATTTCCAATAACTCTAT+TGG - Chr8:12807647-12807666 None:intergenic 30.0%
ACTATGAACTTTCAAAGTGT+TGG + Chr8:12809702-12809721 MsG0880042698.01.T01:intron 30.0%
AGAGTAGTAGTGAAGAATTA+AGG + Chr8:12807386-12807405 MsG0880042698.01.T01:CDS 30.0%
AGTCAGTAATTTACAGTTGT+TGG + Chr8:12808035-12808054 MsG0880042698.01.T01:intron 30.0%
ATTCTTGATGTCAAATTGGT+TGG + Chr8:12808756-12808775 MsG0880042698.01.T01:intron 30.0%
CAAAATCACTAAAGAAGAGA+TGG + Chr8:12807967-12807986 MsG0880042698.01.T01:intron 30.0%
CAAGACTCTCAAATAATTCA+AGG - Chr8:12808802-12808821 None:intergenic 30.0%
CCAAAAAATGAGAATGGTTT+AGG + Chr8:12806977-12806996 MsG0880042698.01.T01:CDS 30.0%
CCATTTCCAATAACTCTATT+GGG - Chr8:12807646-12807665 None:intergenic 30.0%
GCTATATATCTCATACTATG+AGG + Chr8:12809192-12809211 MsG0880042698.01.T01:intron 30.0%
GTCAGTAATTTACAGTTGTT+GGG + Chr8:12808036-12808055 MsG0880042698.01.T01:intron 30.0%
GTGTTAATTTCAAGCAAAAG+AGG - Chr8:12808446-12808465 None:intergenic 30.0%
TACATCTGATAATAAGATGG+GGG + Chr8:12807736-12807755 MsG0880042698.01.T01:intron 30.0%
TATCAGTAATTGGGATTGAA+AGG + Chr8:12807578-12807597 MsG0880042698.01.T01:CDS 30.0%
TCAGAAACACTTGTTCTAAT+TGG - Chr8:12806869-12806888 None:intergenic 30.0%
TCATCAACAATTACACTAAC+AGG - Chr8:12807298-12807317 None:intergenic 30.0%
TCTGATTCAGAATCATTCTA+TGG + Chr8:12806827-12806846 MsG0880042698.01.T01:CDS 30.0%
TTAGAGAATTTAATGGTGTG+GGG + Chr8:12807710-12807729 MsG0880042698.01.T01:intron 30.0%
TTCAATCCCAATAGAGTTAT+TGG + Chr8:12807637-12807656 MsG0880042698.01.T01:CDS 30.0%
TTGGATTGTAGGAAAAGAAA+AGG + Chr8:12809721-12809740 MsG0880042698.01.T01:intron 30.0%
TTTGCTTTCTCATATGTGAT+GGG + Chr8:12808419-12808438 MsG0880042698.01.T01:intron 30.0%
! AGATATTTTGTCCACATCTT+TGG - Chr8:12808719-12808738 None:intergenic 30.0%
! AGTTTAAAATCAGAGTCGTT+AGG + Chr8:12808111-12808130 MsG0880042698.01.T01:intron 30.0%
! TTCTTTAGTGATTTTGCATG+AGG - Chr8:12807963-12807982 None:intergenic 30.0%
! TTTTCTTTTATGGTTGGACT+TGG + Chr8:12807931-12807950 MsG0880042698.01.T01:intron 30.0%
! TTTTGCTTTCTCATATGTGA+TGG + Chr8:12808418-12808437 MsG0880042698.01.T01:intron 30.0%
!! ACACTTGTTCTAATTGGTTT+TGG - Chr8:12806863-12806882 None:intergenic 30.0%
!!! CCTAAACCATTCTCATTTTT+TGG - Chr8:12806980-12806999 None:intergenic 30.0%
!!! GTTTTTGAGTTTGAACAGAA+TGG - Chr8:12806958-12806977 None:intergenic 30.0%
!!! TTTCTTGCTTTTCTGAAGTT+TGG - Chr8:12806659-12806678 None:intergenic 30.0%
AAAACTCCTTCATCAAGATC+AGG + Chr8:12807247-12807266 MsG0880042698.01.T01:CDS 35.0%
AAGGGTTCTTCAATCTATGA+TGG + Chr8:12807361-12807380 MsG0880042698.01.T01:CDS 35.0%
AATTCAAGGACAAGCTCTTT+GGG - Chr8:12808788-12808807 None:intergenic 35.0%
ACAACACATACAACACATCT+GGG - Chr8:12809884-12809903 None:intergenic 35.0%
ACTTGTGTGACATTATGTCA+CGG + Chr8:12809816-12809835 MsG0880042698.01.T01:CDS 35.0%
AGAAGATGAACTTGAATGCA+TGG - Chr8:12806774-12806793 None:intergenic 35.0%
ATGTGATGCAAGAGAGTTTA+AGG + Chr8:12807413-12807432 MsG0880042698.01.T01:CDS 35.0%
CAAAAAGAGGTCAAATGATG+GGG + Chr8:12808657-12808676 MsG0880042698.01.T01:intron 35.0%
CCAAAAAGAGGTCAAATGAT+GGG + Chr8:12808656-12808675 MsG0880042698.01.T01:intron 35.0%
CCCAATAGAGTTATTGGAAA+TGG + Chr8:12807643-12807662 MsG0880042698.01.T01:CDS 35.0%
CTATACTTGTTCATGGCAAT+TGG + Chr8:12808379-12808398 MsG0880042698.01.T01:CDS 35.0%
GAACAGAATGGTTATGGTTA+TGG - Chr8:12806946-12806965 None:intergenic 35.0%
GAAGATGAAGTTGAAAGCAA+AGG + Chr8:12808348-12808367 MsG0880042698.01.T01:CDS 35.0%
GAATTTGCATGAAGGTGAAA+AGG + Chr8:12807342-12807361 MsG0880042698.01.T01:CDS 35.0%
GAGTTTGAACAGAATGGTTA+TGG - Chr8:12806952-12806971 None:intergenic 35.0%
GATGAAGATGAAGATGATGA+TGG + Chr8:12807514-12807533 MsG0880042698.01.T01:CDS 35.0%
GTCGTTAGGTTAAGATTGAA+CGG + Chr8:12808125-12808144 MsG0880042698.01.T01:intron 35.0%
GTGGACAAAATATCTCTTCA+TGG + Chr8:12808724-12808743 MsG0880042698.01.T01:intron 35.0%
TAATTCAAGGACAAGCTCTT+TGG - Chr8:12808789-12808808 None:intergenic 35.0%
TAGAGAATTTAATGGTGTGG+GGG + Chr8:12807711-12807730 MsG0880042698.01.T01:intron 35.0%
TCTTACAGCTCATAGTTCAA+AGG - Chr8:12808202-12808221 None:intergenic 35.0%
TGGAATGAGAAAGTTGTGAA+TGG + Chr8:12806689-12806708 MsG0880042698.01.T01:CDS 35.0%
TGTGATGCAAGAGAGTTTAA+GGG + Chr8:12807414-12807433 MsG0880042698.01.T01:CDS 35.0%
TTGCTTTCTCATATGTGATG+GGG + Chr8:12808420-12808439 MsG0880042698.01.T01:intron 35.0%
! ATTTTTGCACCAGGTGAAAT+AGG - Chr8:12807061-12807080 None:intergenic 35.0%
!! CATCAGTGTCTTCTTTTTCA+AGG + Chr8:12807212-12807231 MsG0880042698.01.T01:CDS 35.0%
!! CTTTCAAAGTGTTGGATTGT+AGG + Chr8:12809710-12809729 MsG0880042698.01.T01:intron 35.0%
!! GTTTTTGTAGCTGTTGATGA+TGG - Chr8:12807142-12807161 None:intergenic 35.0%
!! TTGAACTGATTTGGGAATGA+AGG - Chr8:12808994-12809013 None:intergenic 35.0%
AAGCAAGAAAGGTGGAGAAT+TGG + Chr8:12806669-12806688 MsG0880042698.01.T01:CDS 40.0%
ACAAAGCAACCTATTTCACC+TGG + Chr8:12807049-12807068 MsG0880042698.01.T01:CDS 40.0%
ACACATTGCCACACAATATC+TGG - Chr8:12809912-12809931 None:intergenic 40.0%
ACAGTTGTTGGGATTAAGAC+TGG + Chr8:12808047-12808066 MsG0880042698.01.T01:intron 40.0%
ATTAAATCTGGGCCACACAA+AGG + Chr8:12809843-12809862 MsG0880042698.01.T01:CDS 40.0%
CACAACACATACAACACATC+TGG - Chr8:12809885-12809904 None:intergenic 40.0%
CACATTGCCACACAATATCT+GGG - Chr8:12809911-12809930 None:intergenic 40.0%
CTAATGCATCACATATGCGT+GGG + Chr8:12808473-12808492 MsG0880042698.01.T01:intron 40.0%
CTTCAGAAAAGCAAGAAAGG+TGG + Chr8:12806661-12806680 MsG0880042698.01.T01:CDS 40.0%
GATGAAGATTGTAGACCTTG+TGG + Chr8:12807313-12807332 MsG0880042698.01.T01:CDS 40.0%
GATGTGTTGTATGTGTTGTG+TGG + Chr8:12809885-12809904 MsG0880042698.01.T01:CDS 40.0%
GCAATTGGCAAGAGAAAAGA+GGG + Chr8:12808394-12808413 MsG0880042698.01.T01:CDS 40.0%
GCCAAAAAGAGGTCAAATGA+TGG + Chr8:12808655-12808674 MsG0880042698.01.T01:intron 40.0%
GGACACAAGAATTTGCATGA+AGG + Chr8:12807334-12807353 MsG0880042698.01.T01:CDS 40.0%
GTACTTGGTAGAGACTATAG+AGG + Chr8:12808630-12808649 MsG0880042698.01.T01:intron 40.0%
GTCACGGTGACATTAAATCT+GGG + Chr8:12809832-12809851 MsG0880042698.01.T01:CDS 40.0%
TCTTCAGAATCAAGTTCAGC+TGG + Chr8:12806791-12806810 MsG0880042698.01.T01:CDS 40.0%
TGCAAATTCTTGTGTCCACA+AGG - Chr8:12807331-12807350 None:intergenic 40.0%
TGTCACGGTGACATTAAATC+TGG + Chr8:12809831-12809850 MsG0880042698.01.T01:CDS 40.0%
TTAGCACCTGATCTTGATGA+AGG - Chr8:12807256-12807275 None:intergenic 40.0%
! AAGCTAGCAATTTTTGCACC+AGG - Chr8:12807070-12807089 None:intergenic 40.0%
! AGGTCAAATGATGGGGTTAA+TGG + Chr8:12808664-12808683 MsG0880042698.01.T01:intron 40.0%
! CCCATCATTTGACCTCTTTT+TGG - Chr8:12808659-12808678 None:intergenic 40.0%
!! ACAGAGAGAGAGTGTCATAA+TGG - Chr8:12809382-12809401 None:intergenic 40.0%
!! AGGTGAAGAGTGTCTTTGTA+GGG + Chr8:12809773-12809792 MsG0880042698.01.T01:intron 40.0%
!! GCTATGCTCTAAAGTGTCAT+AGG + Chr8:12809753-12809772 MsG0880042698.01.T01:intron 40.0%
!! TAGGTGAAGAGTGTCTTTGT+AGG + Chr8:12809772-12809791 MsG0880042698.01.T01:intron 40.0%
CAGGTGCTAAAAGATCAGTG+AGG + Chr8:12807266-12807285 MsG0880042698.01.T01:CDS 45.0%
CCACGCATATGTGATGCATT+AGG - Chr8:12808475-12808494 None:intergenic 45.0%
CCTAATGCATCACATATGCG+TGG + Chr8:12808472-12808491 MsG0880042698.01.T01:intron 45.0%
CTATAGAGGCAGCCAAAAAG+AGG + Chr8:12808644-12808663 MsG0880042698.01.T01:intron 45.0%
GGCAATTGGCAAGAGAAAAG+AGG + Chr8:12808393-12808412 MsG0880042698.01.T01:CDS 45.0%
TAGCATGGTCTCCAAAGATG+TGG + Chr8:12808705-12808724 MsG0880042698.01.T01:intron 45.0%
TCAGAATCAAGTTCAGCTGG+TGG + Chr8:12806794-12806813 MsG0880042698.01.T01:CDS 45.0%
! TTGTAGGGAGTGGCGTTTTA+GGG + Chr8:12809788-12809807 MsG0880042698.01.T01:intron 45.0%
! TTTGTAGGGAGTGGCGTTTT+AGG + Chr8:12809787-12809806 MsG0880042698.01.T01:intron 45.0%
!! AAGAGTGTCTTTGTAGGGAG+TGG + Chr8:12809778-12809797 MsG0880042698.01.T01:intron 45.0%
!!! AACTTAATTTTAAAATATTA+TGG + Chr8:12808157-12808176 MsG0880042698.01.T01:intron 5.0%
AAATCTGGGCCACACAAAGG+TGG + Chr8:12809846-12809865 MsG0880042698.01.T01:CDS 50.0%
CACAAAGGTGGTGTGTTGTG+TGG + Chr8:12809858-12809877 MsG0880042698.01.T01:CDS 50.0%
CACAACACACCACCTTTGTG+TGG - Chr8:12809858-12809877 None:intergenic 50.0%
GTGTGGCAATGTGTGTTGTG+TGG + Chr8:12809918-12809937 MsG0880042698.01.T01:CDS 50.0%
TGTGTGGCCCAGATATTGTG+TGG + Chr8:12809901-12809920 MsG0880042698.01.T01:CDS 50.0%
!!! GGGAGTGGCGTTTTAGGGAT+TGG + Chr8:12809793-12809812 MsG0880042698.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 12806632 12809962 12806632 ID=MsG0880042698.01;Name=MsG0880042698.01
Chr8 mRNA 12806632 12809962 12806632 ID=MsG0880042698.01.T01;Parent=MsG0880042698.01;Name=MsG0880042698.01.T01;_AED=0.34;_eAED=0.40;_QI=0|0|0|0.66|1|1|3|0|450
Chr8 exon 12806632 12807664 12806632 ID=MsG0880042698.01.T01:exon:36728;Parent=MsG0880042698.01.T01
Chr8 exon 12808265 12808415 12808265 ID=MsG0880042698.01.T01:exon:36729;Parent=MsG0880042698.01.T01
Chr8 exon 12809794 12809962 12809794 ID=MsG0880042698.01.T01:exon:36730;Parent=MsG0880042698.01.T01
Chr8 CDS 12806632 12807664 12806632 ID=MsG0880042698.01.T01:cds;Parent=MsG0880042698.01.T01
Chr8 CDS 12808265 12808415 12808265 ID=MsG0880042698.01.T01:cds;Parent=MsG0880042698.01.T01
Chr8 CDS 12809794 12809962 12809794 ID=MsG0880042698.01.T01:cds;Parent=MsG0880042698.01.T01
Gene Sequence

>MsG0880042698.01.T01

ATGAAAAGTGTTGAAGCTGAAAAACCAAACTTCAGAAAAGCAAGAAAGGTGGAGAATTGGAATGAGAAAGTTGTGAATGGAAGAAACTCTTTAACAGAATTCGAAACAAGAACAACAAGAAGCAATTCAAACACACTCTCCATGCATTCAAGTTCATCTTCTTCAGAATCAAGTTCAGCTGGTGGTTTTTCATCATCTGATTCAGAATCATTCTATGGTTTACAAAAACCAAAACCAATTAGAACAAGTGTTTCTGAAAAACCAAACATTGATTCATTTCAATATGGTTATAGTAGAAACCATAACTATAACCATAACCATAACCATTCTGTTCAAACTCAAAAACCAAAAAATGAGAATGGTTTAGGTAAAACAAAGTCCAAAGCTTTGAGAATTTTGTATGGTGATTTGAAGAAAACAAAGCAACCTATTTCACCTGGTGCAAAAATTGCTAGCTTTTTGAATTCACTTTTCAATTCTAGTGGAAATACCAAAAAATCAAAAATACCATCATCAACAGCTACAAAAACTACTACAAATTCTGTTTTGGAAGCAAAATCAGCACAAGCTTCAACATGTTCATCAGTGTCTTCTTTTTCAAGGTCTTGTTTGAGTAAAACTCCTTCATCAAGATCAGGTGCTAAAAGATCAGTGAGGTTTTGTCCTGTTAGTGTAATTGTTGATGAAGATTGTAGACCTTGTGGACACAAGAATTTGCATGAAGGTGAAAAGGGTTCTTCAATCTATGATGGAAAGAGTAGTAGTGAAGAATTAAGGTTGCATGTGATGCAAGAGAGTTTAAGGGTTGAAGAGTTAGCTAGAGACTTGTTGAAGAATTATCAGAAAAAAAATGAAGTTGATTTTAATATGCAATTTGAAGATGATGAAGATGAAGATGATGATGGAGCTAGTTGTGCTAGTTCTGATTTGTTTGAATTGGATAATTTATCAGTAATTGGGATTGAAAGGTATAGAGAAGAATTACCAGTTTATGAAACTACTCATTTCAATCCCAATAGAGTTATTGGAAATGATAAGTACAAGTTTGTACCATTTAATGATGATTTTGTATGTGAAATGGGAAAAGATAGAAAAGCAATTAAAGAGTGTGAAGAAGAAGATGAAGTTGAAAGCAAAGGCAGAATTTCTATACTTGTTCATGGCAATTGGCAAGAGAAAAGAGGGGAGTGGCGTTTTAGGGATTGGACTTGTGTGACATTATGTCACGGTGACATTAAATCTGGGCCACACAAAGGTGGTGTGTTGTGTGGCCCAGATGTGTTGTATGTGTTGTGTGGCCCAGATATTGTGTGGCAATGTGTGTTGTGTGGCTCAGATTTAATGTCACCGTGA

Protein sequence

>MsG0880042698.01.T01

MKSVEAEKPNFRKARKVENWNEKVVNGRNSLTEFETRTTRSNSNTLSMHSSSSSSESSSAGGFSSSDSESFYGLQKPKPIRTSVSEKPNIDSFQYGYSRNHNYNHNHNHSVQTQKPKNENGLGKTKSKALRILYGDLKKTKQPISPGAKIASFLNSLFNSSGNTKKSKIPSSTATKTTTNSVLEAKSAQASTCSSVSSFSRSCLSKTPSSRSGAKRSVRFCPVSVIVDEDCRPCGHKNLHEGEKGSSIYDGKSSSEELRLHVMQESLRVEELARDLLKNYQKKNEVDFNMQFEDDEDEDDDGASCASSDLFELDNLSVIGIERYREELPVYETTHFNPNRVIGNDKYKFVPFNDDFVCEMGKDRKAIKECEEEDEVESKGRISILVHGNWQEKRGEWRFRDWTCVTLCHGDIKSGPHKGGVLCGPDVLYVLCGPDIVWQCVLCGSDLMSP*