AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038459.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038459.01.T01 MTR_3g437420 69.048 84 7 2 17 81 6 89 2.57e-28 97.8
MsG0780038459.01.T01 MTR_7g056250 66.667 84 9 2 17 81 6 89 2.35e-27 95.1
MsG0780038459.01.T01 MTR_3g437420 60.000 65 7 2 17 62 6 70 1.87e-13 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038459.01.T01 AT1G48140 47.619 84 25 2 17 81 6 89 4.93e-20 76.6

Find 28 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGCCATCACTGCTTTA+TGG 0.201906 7:-47138126 MsG0780038459.01.T01:CDS
GTAGATCTTCCCTGAAGTTT+AGG 0.269008 7:-47135074 MsG0780038459.01.T01:three_prime_UTR
ATATTACTATTTAGAGTAAA+AGG 0.291554 7:+47134993 None:intergenic
AATTGCCATCACTGCTTTAT+GGG 0.343013 7:-47138125 MsG0780038459.01.T01:CDS
GGAAGCTAATCCTAAACTTC+AGG 0.363771 7:+47135064 None:intergenic
CCTTTGCTTCAAATATTCCT+TGG 0.386512 7:+47135129 None:intergenic
GCCATCACTGCTTTATGGGT+TGG 0.406869 7:-47138121 MsG0780038459.01.T01:CDS
AAAGAGTATGCATACATTAG+TGG 0.419991 7:+47134952 None:intergenic
ACCAACCAAGTATGACTTTG+AGG 0.427005 7:+47138076 None:intergenic
TCTCAACGGTAATTAATTAC+CGG 0.436592 7:+47135043 None:intergenic
CAAAGTCATACTTGGTTGGT+AGG 0.455382 7:-47138073 MsG0780038459.01.T01:intron
TCATTCCTCAAAGTCATACT+TGG 0.460967 7:-47138081 MsG0780038459.01.T01:CDS
AGAAGCCCTGTTGTTGCAAA+AGG 0.469653 7:-47136901 MsG0780038459.01.T01:intron
CAAGGAATATTTGAAGCAAA+GGG 0.473157 7:-47135128 MsG0780038459.01.T01:CDS
GAATGATAGAAGTTTGTAGA+AGG 0.473750 7:+47138098 None:intergenic
CTTTATAGTGTATATGATGA+TGG 0.474012 7:-47138564 MsG0780038459.01.T01:CDS
CCAGGATATTGTTGAGGCCA+AGG 0.475547 7:-47135146 MsG0780038459.01.T01:intron
GAAGCTAATCCTAAACTTCA+GGG 0.512600 7:+47135065 None:intergenic
TGAAGTTTAGGATTAGCTTC+CGG 0.513285 7:-47135062 MsG0780038459.01.T01:three_prime_UTR
TTCTTTCCAGGATATTGTTG+AGG 0.525026 7:-47135152 MsG0780038459.01.T01:intron
CCAAGGAATATTTGAAGCAA+AGG 0.542512 7:-47135129 MsG0780038459.01.T01:CDS
TCCTCAAAGTCATACTTGGT+TGG 0.545138 7:-47138077 MsG0780038459.01.T01:CDS
GCCAACCCATAAAGCAGTGA+TGG 0.562669 7:+47138120 None:intergenic
AAATCATTCGCAACTCTCAA+CGG 0.573441 7:+47135029 None:intergenic
GATCTACAGAACACATCAGC+TGG 0.577779 7:+47135090 None:intergenic
ATATTGTAAAGTATTGTCGC+TGG 0.622797 7:-47138149 MsG0780038459.01.T01:CDS
TTTATAGTGTATATGATGAT+GGG 0.628906 7:-47138563 MsG0780038459.01.T01:intron
AAGGAATATTTGAAGCAAAG+GGG 0.722853 7:-47135127 MsG0780038459.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTATACAAAAAAATTA+GGG - Chr7:47137503-47137522 MsG0780038459.01.T01:intron 10.0%
!! GTAAATAAAAACAAAAAAAA+AGG + Chr7:47136047-47136066 None:intergenic 10.0%
!! TATCATTATACAAAAAAATT+AGG - Chr7:47137502-47137521 MsG0780038459.01.T01:intron 10.0%
!!! GTAAATGTTATAATTTTTTT+AGG + Chr7:47136232-47136251 None:intergenic 10.0%
!!! TTACTATATTTTCTTATTTT+GGG - Chr7:47136187-47136206 MsG0780038459.01.T01:intron 10.0%
!! AGGAAAACATATATTATTTA+TGG + Chr7:47136113-47136132 None:intergenic 15.0%
!! CAAAATAAAAAAGAATCAAA+AGG + Chr7:47135674-47135693 None:intergenic 15.0%
!! TATATAATATTATGGCATAT+AGG - Chr7:47135926-47135945 MsG0780038459.01.T01:intron 15.0%
!!! AAAATGTTTTCTACAAAAAT+AGG - Chr7:47137686-47137705 MsG0780038459.01.T01:intron 15.0%
!!! AAATATTTTGTTGTGTTTTT+AGG - Chr7:47136352-47136371 MsG0780038459.01.T01:intron 15.0%
!!! ATATTACTATTTAGAGTAAA+AGG + Chr7:47138526-47138545 None:intergenic 15.0%
!!! CTTACTATATTTTCTTATTT+TGG - Chr7:47136186-47136205 MsG0780038459.01.T01:intron 15.0%
!!! CTTTACTTTTAACTTTTTAA+TGG - Chr7:47135483-47135502 MsG0780038459.01.T01:intron 15.0%
!!! TACTATATTTTCTTATTTTG+GGG - Chr7:47136188-47136207 MsG0780038459.01.T01:intron 15.0%
!!! TATAGGAGTATATAATATTA+TGG - Chr7:47135918-47135937 MsG0780038459.01.T01:intron 15.0%
!!! TTTGTATAATGATAAGTTTT+TGG + Chr7:47137496-47137515 None:intergenic 15.0%
!! AATGAAACTAATGCTTTAAT+GGG + Chr7:47135999-47136018 None:intergenic 20.0%
!! ACTGTAAAGAAACAAAAATT+TGG + Chr7:47137064-47137083 None:intergenic 20.0%
!! ATATACTTACCAAAATGTTT+AGG - Chr7:47137335-47137354 MsG0780038459.01.T01:intron 20.0%
!! ATCTGTTTATACTAGTTATA+AGG - Chr7:47135026-47135045 MsG0780038459.01.T01:three_prime_UTR 20.0%
!! ATTTAACCAAGTAAAGATTT+GGG + Chr7:47138190-47138209 None:intergenic 20.0%
!! CAAACTATGATAATCAATAT+GGG + Chr7:47137754-47137773 None:intergenic 20.0%
!! TAAAAAAGAATCAAAAGGTT+CGG + Chr7:47135669-47135688 None:intergenic 20.0%
!! TACAATTGTTGAAATATTTC+AGG - Chr7:47136568-47136587 MsG0780038459.01.T01:intron 20.0%
!! TATGCTTCTTATTACTTATT+CGG - Chr7:47135876-47135895 MsG0780038459.01.T01:intron 20.0%
!! TCAAACTATGATAATCAATA+TGG + Chr7:47137755-47137774 None:intergenic 20.0%
!! TTAGAAATTAGCTATTACTA+AGG - Chr7:47136854-47136873 MsG0780038459.01.T01:intron 20.0%
!! TTTATAGTGTATATGATGAT+GGG - Chr7:47134953-47134972 MsG0780038459.01.T01:three_prime_UTR 20.0%
!!! AATACATTACCTAGAATTTT+AGG + Chr7:47136158-47136177 None:intergenic 20.0%
!!! CAATTGTTTGAAATAATTTC+AGG - Chr7:47136758-47136777 MsG0780038459.01.T01:intron 20.0%
!!! GAAAACGTATATTTTTTTCA+GGG + Chr7:47136136-47136155 None:intergenic 20.0%
!!! GTTCTTGTTATTACTTAATA+AGG - Chr7:47136477-47136496 MsG0780038459.01.T01:intron 20.0%
!!! TAACTTTTTAATGGTTTCTA+TGG - Chr7:47135492-47135511 MsG0780038459.01.T01:intron 20.0%
! AAAAAAAAGGGAGAAATGAA+TGG + Chr7:47136034-47136053 None:intergenic 25.0%
! AATTAGGGACATAAATGTTA+TGG - Chr7:47137518-47137537 MsG0780038459.01.T01:intron 25.0%
! AATTTGTATCCAATTAAGTG+TGG + Chr7:47136810-47136829 None:intergenic 25.0%
! ACAAAATGAGCAACATTATT+TGG + Chr7:47138341-47138360 None:intergenic 25.0%
! ATACAAATTAGCTATTGTTG+AGG - Chr7:47136821-47136840 MsG0780038459.01.T01:intron 25.0%
! ATCACAAAAATTAAGTACGT+GGG + Chr7:47135249-47135268 None:intergenic 25.0%
! ATGCCTATGTATAATATATG+TGG + Chr7:47135794-47135813 None:intergenic 25.0%
! ATTTGTATCCAATTAAGTGT+GGG + Chr7:47136809-47136828 None:intergenic 25.0%
! CAAAATATTTGTACTGCAAA+AGG + Chr7:47136342-47136361 None:intergenic 25.0%
! CAAATCTTTACTTGGTTAAA+TGG - Chr7:47138189-47138208 MsG0780038459.01.T01:intron 25.0%
! CATTTAACCAAGTAAAGATT+TGG + Chr7:47138191-47138210 None:intergenic 25.0%
! CTTTATAGTGTATATGATGA+TGG - Chr7:47134952-47134971 MsG0780038459.01.T01:three_prime_UTR 25.0%
! GAATGAAACTAATGCTTTAA+TGG + Chr7:47136000-47136019 None:intergenic 25.0%
! GTAATAGCTAATTTCTAAAC+TGG + Chr7:47136852-47136871 None:intergenic 25.0%
! TATCACAAAAATTAAGTACG+TGG + Chr7:47135250-47135269 None:intergenic 25.0%
! TCAGTGAATAATAAGTAAGT+TGG + Chr7:47135326-47135345 None:intergenic 25.0%
! TTCTATGGTACAATATTCTT+GGG - Chr7:47135507-47135526 MsG0780038459.01.T01:intron 25.0%
! TTTAACCAAGTAAAGATTTG+GGG + Chr7:47138189-47138208 None:intergenic 25.0%
! TTTCTATGGTACAATATTCT+TGG - Chr7:47135506-47135525 MsG0780038459.01.T01:intron 25.0%
! TTTCTTATTGACAATGGAAT+AGG - Chr7:47137379-47137398 MsG0780038459.01.T01:intron 25.0%
!! AATAATACGGACCTTTTAAA+AGG - Chr7:47137111-47137130 MsG0780038459.01.T01:intron 25.0%
!! ATACGTTTTCCTAAAATTCT+AGG - Chr7:47136146-47136165 MsG0780038459.01.T01:intron 25.0%
!! TCATGTGTATTTTCAAAAAG+AGG + Chr7:47135291-47135310 None:intergenic 25.0%
!!! ATAATACGGACCTTTTAAAA+GGG - Chr7:47137112-47137131 MsG0780038459.01.T01:intron 25.0%
!!! GGAAAACGTATATTTTTTTC+AGG + Chr7:47136137-47136156 None:intergenic 25.0%
!!! TGACTTTTTCTTATTGACAA+TGG - Chr7:47137373-47137392 MsG0780038459.01.T01:intron 25.0%
AAGGTCCGTATTATTATTAG+AGG + Chr7:47137106-47137125 None:intergenic 30.0%
ACAATTGAATTTGAACACAG+TGG + Chr7:47137461-47137480 None:intergenic 30.0%
AGCGAAATAAAAATGGAAGT+GGG + Chr7:47135768-47135787 None:intergenic 30.0%
AGGTCCGTATTATTATTAGA+GGG + Chr7:47137105-47137124 None:intergenic 30.0%
ATGACAACTACAAATCAGTA+TGG + Chr7:47138059-47138078 None:intergenic 30.0%
CAAATCATGTTGCATAAACA+GGG - Chr7:47137562-47137581 MsG0780038459.01.T01:intron 30.0%
CAATTGAATTTGAACACAGT+GGG + Chr7:47137460-47137479 None:intergenic 30.0%
CTGATCAAAATGTTCAATGA+GGG + Chr7:47137850-47137869 None:intergenic 30.0%
CTTATTTGATCAAACTGAGA+AGG + Chr7:47138032-47138051 None:intergenic 30.0%
GAATGATAGAAGTTTGTAGA+AGG + Chr7:47135421-47135440 None:intergenic 30.0%
GAGGAGAATTCTTTGATATT+CGG + Chr7:47136991-47137010 None:intergenic 30.0%
GCACCACATATATTATACAT+AGG - Chr7:47135788-47135807 MsG0780038459.01.T01:intron 30.0%
GCTTCCCTCTAATAATAATA+CGG - Chr7:47137098-47137117 MsG0780038459.01.T01:intron 30.0%
TCAAATCATGTTGCATAAAC+AGG - Chr7:47137561-47137580 MsG0780038459.01.T01:intron 30.0%
TCTCAACGGTAATTAATTAC+CGG + Chr7:47138476-47138495 None:intergenic 30.0%
TCTGATCAAAATGTTCAATG+AGG + Chr7:47137851-47137870 None:intergenic 30.0%
TTACAGTCTACAAATCAGTA+TGG + Chr7:47138150-47138169 None:intergenic 30.0%
TTGTTGAAATATTTCAGGAC+TGG - Chr7:47136573-47136592 MsG0780038459.01.T01:intron 30.0%
! AAAGAGTATGCATACATTAG+TGG + Chr7:47138567-47138586 None:intergenic 30.0%
! AAGGAATATTTGAAGCAAAG+GGG - Chr7:47138389-47138408 MsG0780038459.01.T01:intron 30.0%
! AGAAACAAAAATTTGGTGAC+AGG + Chr7:47137057-47137076 None:intergenic 30.0%
! CAAGGAATATTTGAAGCAAA+GGG - Chr7:47138388-47138407 MsG0780038459.01.T01:intron 30.0%
! GATTATCATAGTTTGAAGCA+TGG - Chr7:47137759-47137778 MsG0780038459.01.T01:intron 30.0%
! GCTGTGCTTTTATAGTTTTT+CGG - Chr7:47136501-47136520 MsG0780038459.01.T01:intron 30.0%
! GTTTGAAATAATTTCAGGAC+TGG - Chr7:47136763-47136782 MsG0780038459.01.T01:intron 30.0%
!! AAGAAGGATGTTGATGATAA+TGG + Chr7:47137822-47137841 None:intergenic 30.0%
!! ATATTGTAAAGTATTGTCGC+TGG - Chr7:47135367-47135386 MsG0780038459.01.T01:intron 30.0%
!! CATTTTGGTAAGTATATACC+TGG + Chr7:47137332-47137351 None:intergenic 30.0%
!! GGATTTTTGGATACAAACTT+TGG - Chr7:47137940-47137959 MsG0780038459.01.T01:intron 30.0%
!! TAACTGCTTAAAGAGCATTT+AGG + Chr7:47138249-47138268 None:intergenic 30.0%
!! TATATGATGATGGGTATGAA+TGG - Chr7:47134962-47134981 MsG0780038459.01.T01:three_prime_UTR 30.0%
!! TGCTTTTATAGTTTTTCGGA+TGG - Chr7:47136505-47136524 MsG0780038459.01.T01:intron 30.0%
!! TGTGATTGGCATATTTTTGA+AGG + Chr7:47136958-47136977 None:intergenic 30.0%
!!! AACGTATATTTTTTTCAGGG+AGG + Chr7:47136133-47136152 None:intergenic 30.0%
!!! AGAGTTGCGAATGATTTTTT+TGG - Chr7:47138493-47138512 MsG0780038459.01.T01:intron 30.0%
!!! GATAAGTTTTTGGTTCTGTA+GGG + Chr7:47137486-47137505 None:intergenic 30.0%
!!! GTTGTGTTTTTAGGATGTTA+CGG - Chr7:47136361-47136380 MsG0780038459.01.T01:intron 30.0%
!!! TCATTTTGTTGTTTCTTTCC+AGG - Chr7:47138352-47138371 MsG0780038459.01.T01:intron 30.0%
!!! TGATAAGTTTTTGGTTCTGT+AGG + Chr7:47137487-47137506 None:intergenic 30.0%
AAAATCCTTACACATTGCAC+TGG + Chr7:47137927-47137946 None:intergenic 35.0%
AAATCATTCGCAACTCTCAA+CGG + Chr7:47138490-47138509 None:intergenic 35.0%
AACAAGAACACTAATGCACA+AGG + Chr7:47136466-47136485 None:intergenic 35.0%
AACTAATATGATCCCGCATT+AGG + Chr7:47138299-47138318 None:intergenic 35.0%
AATCAATATGGGATACCCAA+TGG + Chr7:47137743-47137762 None:intergenic 35.0%
AATTGCCATCACTGCTTTAT+GGG - Chr7:47135391-47135410 MsG0780038459.01.T01:intron 35.0%
ACAATGGAATAGGTATAGAG+GGG - Chr7:47137389-47137408 MsG0780038459.01.T01:intron 35.0%
AGATGATTGTAACCTAATGC+GGG - Chr7:47138284-47138303 MsG0780038459.01.T01:intron 35.0%
AGGATGTTACGGTCTAATAA+TGG - Chr7:47136372-47136391 MsG0780038459.01.T01:intron 35.0%
ATCATAATGCTAACAACCAG+TGG - Chr7:47135708-47135727 MsG0780038459.01.T01:intron 35.0%
CAATAGCCATAAATCCTCAA+GGG + Chr7:47137150-47137169 None:intergenic 35.0%
CAGATGATTGTAACCTAATG+CGG - Chr7:47138283-47138302 MsG0780038459.01.T01:intron 35.0%
CAGCGAAATAAAAATGGAAG+TGG + Chr7:47135769-47135788 None:intergenic 35.0%
CCTTTGCTTCAAATATTCCT+TGG + Chr7:47138390-47138409 None:intergenic 35.0%
CGAAATAAAAATGGAAGTGG+GGG + Chr7:47135766-47135785 None:intergenic 35.0%
CGTATTTCATGTCATAGCTT+TGG + Chr7:47135555-47135574 None:intergenic 35.0%
CTATATGCCAGAAAAGAATG+AGG + Chr7:47135903-47135922 None:intergenic 35.0%
CTTATTCGATCAAACTGAGA+AGG + Chr7:47138123-47138142 None:intergenic 35.0%
GAAGCTAATCCTAAACTTCA+GGG + Chr7:47138454-47138473 None:intergenic 35.0%
GACAAAAGTTAGAATGTCTG+AGG + Chr7:47137010-47137029 None:intergenic 35.0%
GACAATGGAATAGGTATAGA+GGG - Chr7:47137388-47137407 MsG0780038459.01.T01:intron 35.0%
GAGTACTCATTAATCTAGTC+TGG + Chr7:47137891-47137910 None:intergenic 35.0%
GCGAAATAAAAATGGAAGTG+GGG + Chr7:47135767-47135786 None:intergenic 35.0%
GCGTATTCATGGTAAAATAG+AGG + Chr7:47135225-47135244 None:intergenic 35.0%
GTTAGTAGATAAGTTGCACT+CGG - Chr7:47136535-47136554 MsG0780038459.01.T01:intron 35.0%
GTTTAACTCCCACACTTAAT+TGG - Chr7:47136798-47136817 MsG0780038459.01.T01:intron 35.0%
TAATTGCCATCACTGCTTTA+TGG - Chr7:47135390-47135409 MsG0780038459.01.T01:intron 35.0%
TACCAAAATGTTTAGGCTGT+AGG - Chr7:47137342-47137361 MsG0780038459.01.T01:intron 35.0%
TAGGGACATAAATGTTATGG+TGG - Chr7:47137521-47137540 MsG0780038459.01.T01:intron 35.0%
TCAATAGCCATAAATCCTCA+AGG + Chr7:47137151-47137170 None:intergenic 35.0%
TCATTCCTCAAAGTCATACT+TGG - Chr7:47135435-47135454 MsG0780038459.01.T01:intron 35.0%
TCGGTTGAGAAATTTGTGAT+TGG + Chr7:47136972-47136991 None:intergenic 35.0%
TGACAATGGAATAGGTATAG+AGG - Chr7:47137387-47137406 MsG0780038459.01.T01:intron 35.0%
TGAGGATTTATGGCTATTGA+AGG - Chr7:47137151-47137170 MsG0780038459.01.T01:intron 35.0%
TGTTACGGTCTAATAATGGT+TGG - Chr7:47136376-47136395 MsG0780038459.01.T01:intron 35.0%
TTCGGTAGGATTTACTGTTT+CGG - Chr7:47137263-47137282 MsG0780038459.01.T01:intron 35.0%
TTCTTTCCAGGATATTGTTG+AGG - Chr7:47138364-47138383 MsG0780038459.01.T01:intron 35.0%
TTTCTCCTCGTAAAATTGCA+AGG + Chr7:47136911-47136930 None:intergenic 35.0%
TTTGATCAAACTGAGAAGGA+TGG + Chr7:47138028-47138047 None:intergenic 35.0%
! AACAAAAATTTGGTGACAGG+TGG + Chr7:47137054-47137073 None:intergenic 35.0%
! CATAACCTTTTGCAACAACA+GGG + Chr7:47136439-47136458 None:intergenic 35.0%
! CATCTTAGGTCCCTTTTAAA+AGG + Chr7:47137125-47137144 None:intergenic 35.0%
! CCAAGGAATATTTGAAGCAA+AGG - Chr7:47138387-47138406 MsG0780038459.01.T01:intron 35.0%
! CTGTGCTTTTATAGTTCGTA+TGG - Chr7:47136690-47136709 MsG0780038459.01.T01:intron 35.0%
! GATATCCTTGCAATTTTACG+AGG - Chr7:47136903-47136922 MsG0780038459.01.T01:CDS 35.0%
! GTGCAATGTGTAAGGATTTT+TGG - Chr7:47137927-47137946 MsG0780038459.01.T01:intron 35.0%
! TGCAATTTTACGAGGAGAAA+GGG - Chr7:47136911-47136930 MsG0780038459.01.T01:CDS 35.0%
! TTGCAATTTTACGAGGAGAA+AGG - Chr7:47136910-47136929 MsG0780038459.01.T01:CDS 35.0%
! TTTTGCATGACAAGGCAAAA+AGG + Chr7:47137974-47137993 None:intergenic 35.0%
!! AAGGATGTTGATGATAATGG+TGG + Chr7:47137819-47137838 None:intergenic 35.0%
!! CTCATTCTTTTCTGGCATAT+AGG - Chr7:47135901-47135920 MsG0780038459.01.T01:intron 35.0%
!! CTTTTAAAAGGGACCTAAGA+TGG - Chr7:47137123-47137142 MsG0780038459.01.T01:intron 35.0%
!! TAAAGAGCATTTAGGAGGAT+AGG + Chr7:47138241-47138260 None:intergenic 35.0%
!! TGAAGTTTAGGATTAGCTTC+CGG - Chr7:47138454-47138473 MsG0780038459.01.T01:intron 35.0%
!!! ACAGAAGTATGTTTTAGCAG+TGG + Chr7:47136319-47136338 None:intergenic 35.0%
AACAGTAAATCCTACCGAAC+TGG + Chr7:47137262-47137281 None:intergenic 40.0%
AAGAAATCAGACTCCACTTG+TGG - Chr7:47137709-47137728 MsG0780038459.01.T01:intron 40.0%
AATGCAACACTAATGCACAG+AGG + Chr7:47136650-47136669 None:intergenic 40.0%
AATGGAATAGGTATAGAGGG+GGG - Chr7:47137391-47137410 MsG0780038459.01.T01:intron 40.0%
ACATGAAATACGCCTCAATG+TGG - Chr7:47135563-47135582 MsG0780038459.01.T01:intron 40.0%
ACCAACCAAGTATGACTTTG+AGG + Chr7:47135443-47135462 None:intergenic 40.0%
AGCCAGAAAGTTGAGTAGTT+GGG + Chr7:47136293-47136312 None:intergenic 40.0%
ATAATGCTAACAACCAGTGG+CGG - Chr7:47135711-47135730 MsG0780038459.01.T01:intron 40.0%
ATCTGTTGTACGAGGTTCTT+TGG - Chr7:47137227-47137246 MsG0780038459.01.T01:intron 40.0%
ATGGTACAATATTCTTGGGC+TGG - Chr7:47135511-47135530 MsG0780038459.01.T01:intron 40.0%
CAAAGTCATACTTGGTTGGT+AGG - Chr7:47135443-47135462 MsG0780038459.01.T01:intron 40.0%
CAATGGAATAGGTATAGAGG+GGG - Chr7:47137390-47137409 MsG0780038459.01.T01:intron 40.0%
CCTGTTGTTGCAAAAGGTTA+TGG - Chr7:47136437-47136456 MsG0780038459.01.T01:intron 40.0%
CGCATTAGGTTACAATCATC+TGG + Chr7:47138285-47138304 None:intergenic 40.0%
CTTAATGACTCCACCATCAT+GGG - Chr7:47135049-47135068 MsG0780038459.01.T01:three_prime_UTR 40.0%
GCAGATTATAGTCCACATTG+AGG + Chr7:47135578-47135597 None:intergenic 40.0%
GGAAGCTAATCCTAAACTTC+AGG + Chr7:47138455-47138474 None:intergenic 40.0%
GGTCTAATAATGGTTGGAGT+TGG - Chr7:47136382-47136401 MsG0780038459.01.T01:intron 40.0%
GTACAACAGATTCAGCAAGT+AGG + Chr7:47137218-47137237 None:intergenic 40.0%
GTAGATCTTCCCTGAAGTTT+AGG - Chr7:47138442-47138461 MsG0780038459.01.T01:intron 40.0%
GTGGTGCAGCGAAATAAAAA+TGG + Chr7:47135775-47135794 None:intergenic 40.0%
TATACCTGGAAACCATGAGA+TGG + Chr7:47137318-47137337 None:intergenic 40.0%
TCAAGCCCCAAATCTTTACT+TGG - Chr7:47138181-47138200 MsG0780038459.01.T01:intron 40.0%
TCCTCAAAGTCATACTTGGT+TGG - Chr7:47135439-47135458 MsG0780038459.01.T01:intron 40.0%
TCTGTTGTACGAGGTTCTTT+GGG - Chr7:47137228-47137247 MsG0780038459.01.T01:intron 40.0%
TGGTACAATATTCTTGGGCT+GGG - Chr7:47135512-47135531 MsG0780038459.01.T01:intron 40.0%
TGTTCGTAGATAAGTGCACT+CGG - Chr7:47136721-47136740 MsG0780038459.01.T01:intron 40.0%
TTCAATGAGGGAAGTGAAGA+AGG + Chr7:47137838-47137857 None:intergenic 40.0%
TTCGATCAAACTGAGAAGGA+TGG + Chr7:47138119-47138138 None:intergenic 40.0%
TTTCGGTCCAATCCAAAGAT+GGG - Chr7:47137280-47137299 MsG0780038459.01.T01:intron 40.0%
TTTGGGCATCAAATCCAGTT+CGG - Chr7:47137245-47137264 MsG0780038459.01.T01:intron 40.0%
! AAGGTTCGGTTAAGCTGTAA+AGG + Chr7:47135655-47135674 None:intergenic 40.0%
! AGCCTACAGCCTAAACATTT+TGG + Chr7:47137347-47137366 None:intergenic 40.0%
! ATTCGGTCCTCATTCTTTTC+TGG - Chr7:47135893-47135912 MsG0780038459.01.T01:intron 40.0%
! CCATAACCTTTTGCAACAAC+AGG + Chr7:47136440-47136459 None:intergenic 40.0%
! CCATACCTTTTGCAACAACA+GGG + Chr7:47136623-47136642 None:intergenic 40.0%
!! CTGCTTAAAGAGCATTTAGG+AGG + Chr7:47138246-47138265 None:intergenic 40.0%
!!! GAAGTATGTTTTAGCAGTGG+CGG + Chr7:47136316-47136335 None:intergenic 40.0%
AATCCTCAAGGGACCATCTT+AGG + Chr7:47137139-47137158 None:intergenic 45.0%
AATGGAGTGAATGCCACAAG+TGG + Chr7:47137725-47137744 None:intergenic 45.0%
ACTTGTGGCATTCACTCCAT+TGG - Chr7:47137724-47137743 MsG0780038459.01.T01:intron 45.0%
AGAAGCCCTGTTGTTGCAAA+AGG - Chr7:47136431-47136450 MsG0780038459.01.T01:intron 45.0%
CAACACTAATGCACAGAGGT+AGG + Chr7:47136646-47136665 None:intergenic 45.0%
CAACAGATTCAGCAAGTAGG+TGG + Chr7:47137215-47137234 None:intergenic 45.0%
CAGGGCTTCTTGAGACAATT+AGG + Chr7:47136421-47136440 None:intergenic 45.0%
CCACTGAACTGGGTTCATTA+AGG - Chr7:47137619-47137638 MsG0780038459.01.T01:intron 45.0%
CCCTGTTGTTGCAAAAGGTA+TGG - Chr7:47136620-47136639 MsG0780038459.01.T01:intron 45.0%
CCTTAATGAACCCAGTTCAG+TGG + Chr7:47137622-47137641 None:intergenic 45.0%
CTAATGCCATGATCCCATGA+TGG + Chr7:47135065-47135084 None:intergenic 45.0%
CTTGCTGAATCTGTTGTACG+AGG - Chr7:47137219-47137238 MsG0780038459.01.T01:intron 45.0%
CTTGTGGCATTCACTCCATT+GGG - Chr7:47137725-47137744 MsG0780038459.01.T01:intron 45.0%
GAGCCAGAAAGTTGAGTAGT+TGG + Chr7:47136294-47136313 None:intergenic 45.0%
GATCTACAGAACACATCAGC+TGG + Chr7:47138429-47138448 None:intergenic 45.0%
GATGGTCCCTTGAGGATTTA+TGG - Chr7:47137141-47137160 MsG0780038459.01.T01:intron 45.0%
GCTTAATGACTCCACCATCA+TGG - Chr7:47135048-47135067 MsG0780038459.01.T01:three_prime_UTR 45.0%
GGTACAATATTCTTGGGCTG+GGG - Chr7:47135513-47135532 MsG0780038459.01.T01:intron 45.0%
GTTTCGGTCCAATCCAAAGA+TGG - Chr7:47137279-47137298 MsG0780038459.01.T01:intron 45.0%
TAATGAACCCAGTTCAGTGG+TGG + Chr7:47137619-47137638 None:intergenic 45.0%
TAGACTACCAACGAGATTGC+TGG - Chr7:47135605-47135624 MsG0780038459.01.T01:intron 45.0%
TCTTGCCAGTGCAATGTGTA+AGG - Chr7:47137919-47137938 MsG0780038459.01.T01:intron 45.0%
TGAGAAGGATGGTCCATTAC+AGG + Chr7:47138017-47138036 None:intergenic 45.0%
TGCCCAACTACTCAACTTTC+TGG - Chr7:47136288-47136307 MsG0780038459.01.T01:intron 45.0%
TTCGGTCCAATCCAAAGATG+GGG - Chr7:47137281-47137300 MsG0780038459.01.T01:intron 45.0%
! ACATTGCACTGGCAAGACTA+AGG + Chr7:47137916-47137935 None:intergenic 45.0%
! GCAGACACTTTTGCATGACA+AGG + Chr7:47137982-47138001 None:intergenic 45.0%
! GCCATACCTTTTGCAACAAC+AGG + Chr7:47136624-47136643 None:intergenic 45.0%
!! ATGCAAAAGTGTCTGCCATC+TGG - Chr7:47138077-47138096 MsG0780038459.01.T01:CDS 45.0%
!! GTTAAAATAATTTATAATAA+AGG - Chr7:47136876-47136895 MsG0780038459.01.T01:intron 5.0%
!! TAAATAAAAACAAAAAAAAA+GGG + Chr7:47136046-47136065 None:intergenic 5.0%
ACAGGGTAATCCCTGTTAGC+AGG - Chr7:47137579-47137598 MsG0780038459.01.T01:intron 50.0%
ACCTGGAAACCATGAGATGG+AGG + Chr7:47137315-47137334 None:intergenic 50.0%
ACTCCACCATCATGGGATCA+TGG - Chr7:47135056-47135075 MsG0780038459.01.T01:three_prime_UTR 50.0%
AGAGGGGGGACAAAATGTTG+TGG - Chr7:47137405-47137424 MsG0780038459.01.T01:intron 50.0%
AGCTACGTTTGCAACTCTGC+AGG - Chr7:47135734-47135753 MsG0780038459.01.T01:intron 50.0%
AGGGGGGACAAAATGTTGTG+GGG - Chr7:47137407-47137426 MsG0780038459.01.T01:intron 50.0%
AGTACGTGGGTGCGTATTCA+TGG + Chr7:47135236-47135255 None:intergenic 50.0%
ATGCCATGATCCCATGATGG+TGG + Chr7:47135062-47135081 None:intergenic 50.0%
CAAGGAGTTGCCTGCTAACA+GGG + Chr7:47137592-47137611 None:intergenic 50.0%
CAGCAAGTAGGTGGTTGCAT+GGG + Chr7:47137206-47137225 None:intergenic 50.0%
CCAGGATATTGTTGAGGCCA+AGG - Chr7:47138370-47138389 MsG0780038459.01.T01:intron 50.0%
CCATCTGGCACATCCTGTAA+TGG - Chr7:47138092-47138111 MsG0780038459.01.T01:CDS 50.0%
CCATTACAGGATGTGCCAGA+CGG + Chr7:47138004-47138023 None:intergenic 50.0%
CCATTACAGGATGTGCCAGA+TGG + Chr7:47138004-47138023 None:intergenic 50.0%
CCTTGGCCTCAACAATATCC+TGG + Chr7:47138373-47138392 None:intergenic 50.0%
GAGCATTTAGGAGGATAGGC+TGG + Chr7:47138237-47138256 None:intergenic 50.0%
GAGGGGGGACAAAATGTTGT+GGG - Chr7:47137406-47137425 MsG0780038459.01.T01:intron 50.0%
GCCAACCCATAAAGCAGTGA+TGG + Chr7:47135399-47135418 None:intergenic 50.0%
GCCATCACTGCTTTATGGGT+TGG - Chr7:47135395-47135414 MsG0780038459.01.T01:intron 50.0%
GGCATCAAATCCAGTTCGGT+AGG - Chr7:47137249-47137268 MsG0780038459.01.T01:intron 50.0%
GTGTGTGTGTGTGTTGTGTG+TGG + Chr7:47135833-47135852 None:intergenic 50.0%
TCAAGGAGTTGCCTGCTAAC+AGG + Chr7:47137593-47137612 None:intergenic 50.0%
TCAGCAAGTAGGTGGTTGCA+TGG + Chr7:47137207-47137226 None:intergenic 50.0%
TCGGTCCAATCCAAAGATGG+GGG - Chr7:47137282-47137301 MsG0780038459.01.T01:intron 50.0%
TGTTAGCAGGCAACTCCTTG+AGG - Chr7:47137592-47137611 MsG0780038459.01.T01:intron 50.0%
TTGAGGTCCACCACTGAACT+GGG - Chr7:47137609-47137628 MsG0780038459.01.T01:intron 50.0%
TTGCATGGGCAAGGGAAGAA+GGG + Chr7:47137192-47137211 None:intergenic 50.0%
! TTGCACTGGCAAGACTAAGG+AGG + Chr7:47137913-47137932 None:intergenic 50.0%
!! ATGCAAAAGTGTCTGCCGTC+TGG - Chr7:47137986-47138005 MsG0780038459.01.T01:intron 50.0%
ACGCACCCCCATCTTTGGAT+TGG + Chr7:47137290-47137309 None:intergenic 55.0%
AGTAGGTGGTTGCATGGGCA+AGG + Chr7:47137201-47137220 None:intergenic 55.0%
CCATCAGCCAGCAATCTCGT+TGG + Chr7:47135615-47135634 None:intergenic 55.0%
CCGTCTGGCACATCCTGTAA+TGG - Chr7:47138001-47138020 MsG0780038459.01.T01:intron 55.0%
CTTGAGGTCCACCACTGAAC+TGG - Chr7:47137608-47137627 MsG0780038459.01.T01:intron 55.0%
GCCTCCATCTCATGGTTTCC+AGG - Chr7:47137311-47137330 MsG0780038459.01.T01:intron 55.0%
GGACCTAAGATGGTCCCTTG+AGG - Chr7:47137133-47137152 MsG0780038459.01.T01:intron 55.0%
GTAGGTGGTTGCATGGGCAA+GGG + Chr7:47137200-47137219 None:intergenic 55.0%
GTTGCATGGGCAAGGGAAGA+AGG + Chr7:47137193-47137212 None:intergenic 55.0%
! AATCCAAAGATGGGGGTGCG+TGG - Chr7:47137289-47137308 MsG0780038459.01.T01:intron 55.0%
! CCAACGAGATTGCTGGCTGA+TGG - Chr7:47135612-47135631 MsG0780038459.01.T01:intron 55.0%
!! CAGTTCAGTGGTGGACCTCA+AGG + Chr7:47137610-47137629 None:intergenic 55.0%
TGCAAACGTAGCTCCGCCAC+TGG + Chr7:47135727-47135746 None:intergenic 60.0%
AGGCCACGCACCCCCATCTT+TGG + Chr7:47137295-47137314 None:intergenic 65.0%
GGTGCGTGGCCTCCATCTCA+TGG - Chr7:47137303-47137322 MsG0780038459.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 47134949 47138589 47134949 ID=MsG0780038459.01;Name=MsG0780038459.01
Chr7 mRNA 47134949 47138589 47134949 ID=MsG0780038459.01.T01;Parent=MsG0780038459.01;Name=MsG0780038459.01.T01;_AED=0.39;_eAED=0.39;_QI=0|0|0.25|0.5|0|0|4|156|81
Chr7 exon 47134949 47135164 47134949 ID=MsG0780038459.01.T01:exon:5975;Parent=MsG0780038459.01.T01
Chr7 exon 47136902 47136948 47136902 ID=MsG0780038459.01.T01:exon:5974;Parent=MsG0780038459.01.T01
Chr7 exon 47138074 47138186 47138074 ID=MsG0780038459.01.T01:exon:5973;Parent=MsG0780038459.01.T01
Chr7 exon 47138564 47138589 47138564 ID=MsG0780038459.01.T01:exon:5972;Parent=MsG0780038459.01.T01
Chr7 CDS 47138564 47138589 47138564 ID=MsG0780038459.01.T01:cds;Parent=MsG0780038459.01.T01
Chr7 CDS 47138074 47138186 47138074 ID=MsG0780038459.01.T01:cds;Parent=MsG0780038459.01.T01
Chr7 CDS 47136902 47136948 47136902 ID=MsG0780038459.01.T01:cds;Parent=MsG0780038459.01.T01
Chr7 CDS 47135105 47135164 47135105 ID=MsG0780038459.01.T01:cds;Parent=MsG0780038459.01.T01
Chr7 three_prime_UTR 47134949 47135104 47134949 ID=MsG0780038459.01.T01:three_prime_utr;Parent=MsG0780038459.01.T01
Gene Sequence

>MsG0780038459.01.T01

ATGCTTTATAGTGTATATGATGATGGATTGATAAATGAAGCATATTGTAAAGTATTGTCGCTGGTAATTGCCATCACTGCTTTATGGGTTGGCCTTCTACAAACTTCTATCATTCCTCAAAGTCATACTTGGTTGGTAGGACTGGAAACGTGTTTGTGTTTAACAGAAGCCCTGTTGTTGCAAAAGGATATTGTTGAGGCCAAGGAATATTTGAAGCAAAGGGGAGTTGATGTCAGTACCAGCTGA
Protein sequence

>MsG0780038459.01.T01

MLYSVYDDGLINEAYCKVLSLVIAITALWVGLLQTSIIPQSHTWLVGLETCLCLTEALLLQKDIVEAKEYLKQRGVDVSTS*