AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038639.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038639.01.T01 MTR_7g059010 99.322 295 2 0 1 295 1 295 0.0 605
MsG0780038639.01.T01 MTR_7g059010 98.983 295 3 0 1 295 18 312 0.0 602
MsG0780038639.01.T01 MTR_7g058930 76.491 285 67 0 11 295 16 300 1.12e-166 464
MsG0780038639.01.T01 MTR_8g075260 53.731 268 111 3 15 274 32 294 2.63e-94 287
MsG0780038639.01.T01 MTR_2g030510 54.286 245 109 1 15 256 47 291 2.12e-85 268
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038639.01.T01 AT5G48850 65.068 292 95 3 9 295 17 306 3.63e-134 382
MsG0780038639.01.T01 AT1G04770 58.885 287 105 5 19 295 20 303 1.45e-115 335
MsG0780038639.01.T01 AT3G51280 55.385 260 111 2 19 274 30 288 1.51e-93 283
MsG0780038639.01.T01 AT4G20900 53.469 245 106 2 10 248 42 284 2.74e-84 260
MsG0780038639.01.T01 AT4G20900 50.192 261 106 3 10 248 42 300 4.60e-80 249
MsG0780038639.01.T01 AT5G44330 52.489 221 102 1 24 241 49 269 8.76e-68 218
MsG0780038639.01.T01 AT5G22794 65.672 67 23 0 96 162 71 137 5.50e-23 95.1
MsG0780038639.01.T01 AT5G22794 56.716 67 22 1 96 162 71 130 2.56e-16 76.3

Find 68 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAGTTTATGGATGATTT+AGG 0.095537 7:-50281342 MsG0780038639.01.T01:CDS
CTTGCCACAACCTAAGTTTA+TGG 0.146740 7:-50281352 MsG0780038639.01.T01:CDS
CAATTCTTCAGCTCTATTTC+TGG 0.147773 7:+50281395 None:intergenic
CTTTGTCGTCCTTCCATTAA+AGG 0.194578 7:+50282950 None:intergenic
TGGGAGAGATTCAGTGAAAA+TGG 0.247645 7:+50284760 None:intergenic
CTAAGTTTATGGATGATTTA+GGG 0.273109 7:-50281341 MsG0780038639.01.T01:CDS
GTATATATTGTCTTAGGTCT+AGG 0.297722 7:-50281175 MsG0780038639.01.T01:three_prime_UTR
GTTATTCATAAGGTTCCTTA+TGG 0.304411 7:-50284597 MsG0780038639.01.T01:CDS
TACCAAGGTGAGGCCTTTAA+TGG 0.310819 7:-50282963 MsG0780038639.01.T01:CDS
AACTTGTTCAAGAATTAAAT+AGG 0.323980 7:+50281455 None:intergenic
TATGTTGTATATATTGTCTT+AGG 0.330485 7:-50281181 MsG0780038639.01.T01:three_prime_UTR
TTGATGGATTACTTAATGTT+TGG 0.342938 7:-50281293 MsG0780038639.01.T01:CDS
TAGGAAATCGGAGAAGAAAA+TGG 0.356124 7:+50281138 None:intergenic
AAGTTGCTATAGTGTACTTT+TGG 0.357890 7:-50283557 MsG0780038639.01.T01:CDS
AGTACCTACCTGAGCATGTT+TGG 0.360029 7:+50284554 None:intergenic
AAGTACACTATAGCAACTTC+TGG 0.375170 7:+50283561 None:intergenic
GGGAGAGATTCAGTGAAAAT+GGG 0.383949 7:+50284761 None:intergenic
GGATAGTGCTCTAAAGGATA+TGG 0.385948 7:-50283508 MsG0780038639.01.T01:CDS
GCATGTTTGGCTTTGACATA+AGG 0.405107 7:+50284567 None:intergenic
TCTCTATCATGTTATTCATA+AGG 0.406833 7:-50284607 MsG0780038639.01.T01:CDS
AGAAGATATTTCCTCAAAGA+TGG 0.410475 7:+50281245 None:intergenic
ATTGATTGTTTAGGGAAACT+TGG 0.412436 7:-50281613 MsG0780038639.01.T01:intron
TGTTTAGGGAAACTTGGGTT+GGG 0.416088 7:-50281607 MsG0780038639.01.T01:intron
ATCCATCAATTCCTTTCAAA+AGG 0.416312 7:+50281307 None:intergenic
AAGAAGACTTCCCATCTTTG+AGG 0.419105 7:-50281256 MsG0780038639.01.T01:CDS
TATATATTGTCTTAGGTCTA+GGG 0.422466 7:-50281174 MsG0780038639.01.T01:three_prime_UTR
ATAATATATACAAGAAACTT+TGG 0.427982 7:+50284823 None:intergenic
GGAAGTCTTCTTGATCTAGT+TGG 0.437256 7:+50281267 None:intergenic
GGCTAAATTCAAAGCCTTGT+TGG 0.440956 7:+50281512 None:intergenic
CAAAGTGGATAGTGCTCTAA+AGG 0.448477 7:-50283514 MsG0780038639.01.T01:CDS
GCAAGAAACAGCAAGACTAT+TGG 0.460999 7:-50282886 MsG0780038639.01.T01:intron
TCTCTCCCATCTTCATCATA+AGG 0.470766 7:-50284746 MsG0780038639.01.T01:five_prime_UTR
TTTCTTGCTTGATAGAAACT+TGG 0.480530 7:+50282901 None:intergenic
CCTAAATCATCCATAAACTT+AGG 0.481001 7:+50281342 None:intergenic
GTGACATATACAGAGAGAAA+TGG 0.484017 7:-50284676 MsG0780038639.01.T01:exon
AGATTGTCTCATTAAGCATA+AGG 0.492447 7:+50281491 None:intergenic
TGTCAAAGCCAAACATGCTC+AGG 0.496739 7:-50284562 MsG0780038639.01.T01:intron
ATTGTCTTAGGTCTAGGGTT+GGG 0.506851 7:-50281169 MsG0780038639.01.T01:three_prime_UTR
CATGCACCTTATGATGAAGA+TGG 0.506907 7:+50284740 None:intergenic
GCAAAGGAAGAATAGGAAAT+CGG 0.511019 7:+50281126 None:intergenic
ACAAAGACTGCTCGCTCTCA+TGG 0.512305 7:-50282933 MsG0780038639.01.T01:CDS
AATGAGACAATCTCGTTATG+AGG 0.514397 7:-50281481 MsG0780038639.01.T01:CDS
TTGTTTAGGGAAACTTGGGT+TGG 0.515491 7:-50281608 MsG0780038639.01.T01:intron
TCAGAAATGTGGAAGAATAG+AGG 0.535352 7:-50283024 MsG0780038639.01.T01:intron
GAAGATATTTCCTCAAAGAT+GGG 0.535613 7:+50281246 None:intergenic
TGTACTTCTTGATCTTTACA+AGG 0.536497 7:-50283385 MsG0780038639.01.T01:intron
TATTGTCTTAGGTCTAGGGT+TGG 0.544140 7:-50281170 MsG0780038639.01.T01:three_prime_UTR
GACTTGATTTCATCAGAACC+TGG 0.545316 7:+50281417 None:intergenic
TTGATTGTTTAGGGAAACTT+GGG 0.545737 7:-50281612 MsG0780038639.01.T01:intron
AAACTTAGGTTGTGGCAAGT+TGG 0.547589 7:+50281356 None:intergenic
GGAGAGATTCAGTGAAAATG+GGG 0.548864 7:+50284762 None:intergenic
AAGAACATTGACAAGTTGAC+AGG 0.548894 7:+50281021 None:intergenic
ACATAAGGAGTATCACCATA+AGG 0.554287 7:+50284582 None:intergenic
TCATCCATAAACTTAGGTTG+TGG 0.560954 7:+50281348 None:intergenic
GTATTGAAGAAAAGTTCTAA+AGG 0.565096 7:-50284642 MsG0780038639.01.T01:CDS
ATGCACCTTATGATGAAGAT+GGG 0.587704 7:+50284741 None:intergenic
AAACTACATGATGGCTGAGG+TGG 0.597629 7:-50281568 MsG0780038639.01.T01:CDS
GCAAAAGACAAACTACATGA+TGG 0.600357 7:-50281577 MsG0780038639.01.T01:CDS
TTCCATTAAAGGCCTCACCT+TGG 0.605669 7:+50282961 None:intergenic
GATAGATGCTGATGCCAACA+AGG 0.611933 7:-50281526 MsG0780038639.01.T01:CDS
AAGGTGAGGCCTTTAATGGA+AGG 0.621345 7:-50282959 MsG0780038639.01.T01:CDS
AATCAATGCTGGAGACAAAG+TGG 0.650220 7:-50283529 MsG0780038639.01.T01:CDS
CATATACAGAGAGAAATGGA+AGG 0.651435 7:-50284672 MsG0780038639.01.T01:exon
GACAAACTACATGATGGCTG+AGG 0.652612 7:-50281571 MsG0780038639.01.T01:CDS
AAGCTAAGACTTATCTACCA+AGG 0.663143 7:-50282978 MsG0780038639.01.T01:CDS
AAGACTTATCTACCAAGGTG+AGG 0.669025 7:-50282973 MsG0780038639.01.T01:CDS
AGAGATTCAGTGAAAATGGG+GGG 0.681806 7:+50284764 None:intergenic
GAGAGATTCAGTGAAAATGG+GGG 0.712050 7:+50284763 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAAAATAAAATAATA+TGG - Chr7:50283641-50283660 MsG0780038639.01.T01:intron 0.0%
!!! TATTATTTTATTTTAAAATT+TGG + Chr7:50283641-50283660 None:intergenic 0.0%
!! AAAATCAAATACTATATAAA+AGG + Chr7:50283394-50283413 None:intergenic 10.0%
!! AAATTTACTTATATATGAAT+TGG - Chr7:50283367-50283386 MsG0780038639.01.T01:intron 10.0%
!!! AATTTTGTACTAAAAATATT+TGG - Chr7:50281920-50281939 MsG0780038639.01.T01:intron 10.0%
!!! GTTTATCAATATTTTTTTAA+AGG + Chr7:50283489-50283508 None:intergenic 10.0%
!!! TTGTAAAAATGATTATTTTT+GGG - Chr7:50284164-50284183 MsG0780038639.01.T01:intron 10.0%
!!! TTTGTAAAAATGATTATTTT+TGG - Chr7:50284163-50284182 MsG0780038639.01.T01:intron 10.0%
!! AATTTAGAGATCAAATTAAA+AGG + Chr7:50281418-50281437 None:intergenic 15.0%
!! ATAATATATACAAGAAACTT+TGG + Chr7:50281032-50281051 None:intergenic 15.0%
!! ATTTACACAAAAACTAAATT+AGG + Chr7:50282809-50282828 None:intergenic 15.0%
!! ATTTAGAGATCAAATTAAAA+GGG + Chr7:50281417-50281436 None:intergenic 15.0%
!! CAAAATGTAATATATTTACA+AGG + Chr7:50283315-50283334 None:intergenic 15.0%
!! TAAATAAATATTACAACATG+TGG - Chr7:50283443-50283462 MsG0780038639.01.T01:CDS 15.0%
!! TTATATTGTTCAAATATTAC+CGG + Chr7:50283178-50283197 None:intergenic 15.0%
!!! AATGATTCTTTTTTATATCT+AGG - Chr7:50284197-50284216 MsG0780038639.01.T01:intron 15.0%
!!! ATATATAAGTAAATTTTGCA+AGG + Chr7:50283363-50283382 None:intergenic 15.0%
!!! ATTTTGCTTATATTTTGTTA+CGG - Chr7:50281954-50281973 MsG0780038639.01.T01:intron 15.0%
!!! CAAATAAATATTTTTACAAG+AGG - Chr7:50283699-50283718 MsG0780038639.01.T01:intron 15.0%
!!! GAAATACAAAAAATTGTTTT+AGG + Chr7:50283667-50283686 None:intergenic 15.0%
!!! TAATTTTTTAACATTATCAC+CGG + Chr7:50282674-50282693 None:intergenic 15.0%
!!! TTTTAATATTAAAAGAGTGA+GGG + Chr7:50283894-50283913 None:intergenic 15.0%
!!! TTTTTAATATTAAAAGAGTG+AGG + Chr7:50283895-50283914 None:intergenic 15.0%
!! AAAGTAAAAATATTCGTACA+TGG + Chr7:50283288-50283307 None:intergenic 20.0%
!! AATATAATGAAACACATGTT+TGG + Chr7:50282498-50282517 None:intergenic 20.0%
!! ACAACTTTCATATAAAATGT+CGG - Chr7:50282757-50282776 MsG0780038639.01.T01:intron 20.0%
!! ATAGTGCAAATATTCTAAAT+AGG - Chr7:50281684-50281703 MsG0780038639.01.T01:intron 20.0%
!! CTCACAAAAATTTCTTAAAT+GGG + Chr7:50283963-50283982 None:intergenic 20.0%
!! GATGTTCAATTATCATATTA+TGG - Chr7:50282527-50282546 MsG0780038639.01.T01:intron 20.0%
!! TAAAGAAAAACTATGAACAT+AGG + Chr7:50281058-50281077 None:intergenic 20.0%
!! TATATTGTTCAAATATTACC+GGG + Chr7:50283177-50283196 None:intergenic 20.0%
!! TATGTTGTATATATTGTCTT+AGG - Chr7:50284671-50284690 MsG0780038639.01.T01:exon 20.0%
!! TCTCACAAAAATTTCTTAAA+TGG + Chr7:50283964-50283983 None:intergenic 20.0%
!!! AACTTGTTCAAGAATTAAAT+AGG + Chr7:50284400-50284419 None:intergenic 20.0%
!!! AAGATTCTTTTTAAGATTCA+GGG - Chr7:50282051-50282070 MsG0780038639.01.T01:intron 20.0%
!!! ATTTTTTTTCTTCAACACAA+TGG - Chr7:50284115-50284134 MsG0780038639.01.T01:intron 20.0%
!!! TAAGATTCTTTTTAAGATTC+AGG - Chr7:50282050-50282069 MsG0780038639.01.T01:intron 20.0%
!!! TTCTAATTTTTTACCTTCAT+TGG - Chr7:50282149-50282168 MsG0780038639.01.T01:intron 20.0%
! AACTTGAATCAACATATGTT+TGG + Chr7:50283059-50283078 None:intergenic 25.0%
! AATCATGTAATAACCAATGA+AGG + Chr7:50282165-50282184 None:intergenic 25.0%
! CAAATTAAAAGGGATAAAGA+TGG + Chr7:50281407-50281426 None:intergenic 25.0%
! CTAAATAGGTCAAGTAATAT+GGG - Chr7:50281698-50281717 MsG0780038639.01.T01:intron 25.0%
! CTAAGTTTATGGATGATTTA+GGG - Chr7:50284511-50284530 MsG0780038639.01.T01:intron 25.0%
! CTTGTATGATCTATATTGTA+GGG + Chr7:50283210-50283229 None:intergenic 25.0%
! GAATATGATATCAATGTGTA+TGG - Chr7:50282247-50282266 MsG0780038639.01.T01:intron 25.0%
! GTGAGGAAAAAAATAGAATA+AGG - Chr7:50284768-50284787 MsG0780038639.01.T01:five_prime_UTR 25.0%
! TATATATTGTCTTAGGTCTA+GGG - Chr7:50284678-50284697 MsG0780038639.01.T01:exon 25.0%
! TCTAAATAGGTCAAGTAATA+TGG - Chr7:50281697-50281716 MsG0780038639.01.T01:intron 25.0%
! TCTCTATCATGTTATTCATA+AGG - Chr7:50281245-50281264 MsG0780038639.01.T01:CDS 25.0%
! TTAAAAAGACCGTATATAAC+AGG + Chr7:50281990-50282009 None:intergenic 25.0%
! TTAATATGCATCATTGTATG+TGG - Chr7:50281373-50281392 MsG0780038639.01.T01:CDS 25.0%
!! AACACATTGATTGATTGTTT+AGG - Chr7:50284230-50284249 MsG0780038639.01.T01:intron 25.0%
!! ACACATTGATTGATTGTTTA+GGG - Chr7:50284231-50284250 MsG0780038639.01.T01:intron 25.0%
!! AGTTATTGATAGTTGATTAG+TGG - Chr7:50283935-50283954 MsG0780038639.01.T01:intron 25.0%
!! GTATTGAAGAAAAGTTCTAA+AGG - Chr7:50281210-50281229 MsG0780038639.01.T01:exon 25.0%
!! GTTATTGATAGTTGATTAGT+GGG - Chr7:50283936-50283955 MsG0780038639.01.T01:intron 25.0%
!! TTACTATTACCTTTTCAGTA+GGG - Chr7:50281803-50281822 MsG0780038639.01.T01:intron 25.0%
!! TTTACTATTACCTTTTCAGT+AGG - Chr7:50281802-50281821 MsG0780038639.01.T01:intron 25.0%
!! TTTTGTGTAAATCAGAAATG+TGG - Chr7:50282817-50282836 MsG0780038639.01.T01:intron 25.0%
!!! AAAACATTTGACTTTTTACC+TGG + Chr7:50281889-50281908 None:intergenic 25.0%
!!! ATCTTCTTTTAGAGATCAAT+TGG - Chr7:50284623-50284642 MsG0780038639.01.T01:CDS 25.0%
!!! TTGATGGATTACTTAATGTT+TGG - Chr7:50284559-50284578 MsG0780038639.01.T01:intron 25.0%
!!! TTTTTTTCCTCACCATTTTA+AGG + Chr7:50284761-50284780 None:intergenic 25.0%
AAAAAGAGGAGAAACAGAAA+GGG - Chr7:50281142-50281161 MsG0780038639.01.T01:three_prime_UTR 30.0%
AGAAGATATTTCCTCAAAGA+TGG + Chr7:50284610-50284629 None:intergenic 30.0%
AGATTGTCTCATTAAGCATA+AGG + Chr7:50284364-50284383 None:intergenic 30.0%
AGGAAAAAAAACAGTATTGC+AGG + Chr7:50283257-50283276 None:intergenic 30.0%
ATCCATCAATTCCTTTCAAA+AGG + Chr7:50284548-50284567 None:intergenic 30.0%
ATGAAAATCAAAAGCAAAGC+AGG - Chr7:50283511-50283530 MsG0780038639.01.T01:CDS 30.0%
ATGTTACATTGTTTCAGTTC+TGG - Chr7:50281440-50281459 MsG0780038639.01.T01:CDS 30.0%
ATTGATTGTTTAGGGAAACT+TGG - Chr7:50284239-50284258 MsG0780038639.01.T01:intron 30.0%
CCTAAATCATCCATAAACTT+AGG + Chr7:50284513-50284532 None:intergenic 30.0%
CCTAAGTTTATGGATGATTT+AGG - Chr7:50284510-50284529 MsG0780038639.01.T01:intron 30.0%
CCTACAATATAGATCATACA+AGG - Chr7:50283208-50283227 MsG0780038639.01.T01:intron 30.0%
CCTTGTATGATCTATATTGT+AGG + Chr7:50283211-50283230 None:intergenic 30.0%
CTCACTTTATAGCAGAATAT+AGG - Chr7:50281854-50281873 MsG0780038639.01.T01:intron 30.0%
CTCCAATATGAATGAGATAA+AGG - Chr7:50283418-50283437 MsG0780038639.01.T01:CDS 30.0%
CTTTATCTCATTCATATTGG+AGG + Chr7:50283420-50283439 None:intergenic 30.0%
GAAGATATTTCCTCAAAGAT+GGG + Chr7:50284609-50284628 None:intergenic 30.0%
GTATATATTGTCTTAGGTCT+AGG - Chr7:50284677-50284696 MsG0780038639.01.T01:exon 30.0%
GTCCTTTATCTCATTCATAT+TGG + Chr7:50283423-50283442 None:intergenic 30.0%
GTTATTCATAAGGTTCCTTA+TGG - Chr7:50281255-50281274 MsG0780038639.01.T01:CDS 30.0%
TCAACTAGGTCAAGTAATAT+GGG + Chr7:50281485-50281504 None:intergenic 30.0%
TGTACTTCTTGATCTTTACA+AGG - Chr7:50282467-50282486 MsG0780038639.01.T01:intron 30.0%
TTCAACTAGGTCAAGTAATA+TGG + Chr7:50281486-50281505 None:intergenic 30.0%
TTGATTGTTTAGGGAAACTT+GGG - Chr7:50284240-50284259 MsG0780038639.01.T01:intron 30.0%
TTTAAAGGTAGTCAATGCTT+TGG + Chr7:50283474-50283493 None:intergenic 30.0%
TTTCTTGCTTGATAGAAACT+TGG + Chr7:50282954-50282973 None:intergenic 30.0%
! AAGAAATTTTTGTGAGATGC+TGG - Chr7:50283967-50283986 MsG0780038639.01.T01:intron 30.0%
! AAGTTGCTATAGTGTACTTT+TGG - Chr7:50282295-50282314 MsG0780038639.01.T01:intron 30.0%
! AGAAATTTTTGTGAGATGCT+GGG - Chr7:50283968-50283987 MsG0780038639.01.T01:intron 30.0%
! ATTCTTGAACAAGTTTTGCA+AGG - Chr7:50284405-50284424 MsG0780038639.01.T01:intron 30.0%
! GAAGCTATCAAATCTTTTAG+AGG - Chr7:50282408-50282427 MsG0780038639.01.T01:intron 30.0%
! TTTTTCTCCTTAAAATGGTG+AGG - Chr7:50284751-50284770 MsG0780038639.01.T01:five_prime_UTR 30.0%
!! CACCATTTTAAGGAGAAAAA+GGG + Chr7:50284751-50284770 None:intergenic 30.0%
!! CAGTCTATGTTGTTTCATAT+TGG - Chr7:50282588-50282607 MsG0780038639.01.T01:intron 30.0%
!! TCACCATTTTAAGGAGAAAA+AGG + Chr7:50284752-50284771 None:intergenic 30.0%
!!! ATACGGTCTTTTTAAGATTC+AGG - Chr7:50281995-50282014 MsG0780038639.01.T01:intron 30.0%
!!! CCATTTTTGGGTTCTTAAAT+GGG + Chr7:50284064-50284083 None:intergenic 30.0%
!!! GCTTTGCTTTTGATTTTCAT+TGG + Chr7:50283511-50283530 None:intergenic 30.0%
!!! TACGGTCTTTTTAAGATTCA+GGG - Chr7:50281996-50282015 MsG0780038639.01.T01:intron 30.0%
!!! TCCATTTTTGGGTTCTTAAA+TGG + Chr7:50284065-50284084 None:intergenic 30.0%
AAAAAGGGCAAAGGAAGAAT+AGG + Chr7:50284736-50284755 None:intergenic 35.0%
AAAAATGGATGTCTCCATTG+TGG - Chr7:50284076-50284095 MsG0780038639.01.T01:intron 35.0%
AAATAAGTGATGTGTACACG+TGG - Chr7:50284036-50284055 MsG0780038639.01.T01:intron 35.0%
AAGCTAAGACTTATCTACCA+AGG - Chr7:50282874-50282893 MsG0780038639.01.T01:intron 35.0%
AAGTACACTATAGCAACTTC+TGG + Chr7:50282294-50282313 None:intergenic 35.0%
AATAAGTGATGTGTACACGT+GGG - Chr7:50284037-50284056 MsG0780038639.01.T01:intron 35.0%
AATGAGACAATCTCGTTATG+AGG - Chr7:50284371-50284390 MsG0780038639.01.T01:intron 35.0%
ATAGGTCAAGTAATATGGGA+CGG - Chr7:50281702-50281721 MsG0780038639.01.T01:intron 35.0%
ATGCACCTTATGATGAAGAT+GGG + Chr7:50281114-50281133 None:intergenic 35.0%
CAATTCTTCAGCTCTATTTC+TGG + Chr7:50284460-50284479 None:intergenic 35.0%
CATATACAGAGAGAAATGGA+AGG - Chr7:50281180-50281199 MsG0780038639.01.T01:three_prime_UTR 35.0%
CCCATTTAAGAACCCAAAAA+TGG - Chr7:50284061-50284080 MsG0780038639.01.T01:intron 35.0%
GAAAAAGAGGAGAAACAGAA+AGG - Chr7:50281141-50281160 MsG0780038639.01.T01:three_prime_UTR 35.0%
GCAAAAGACAAACTACATGA+TGG - Chr7:50284275-50284294 MsG0780038639.01.T01:intron 35.0%
GCAAAGGAAGAATAGGAAAT+CGG + Chr7:50284729-50284748 None:intergenic 35.0%
GGAGAGATTGAGTTCTTATT+AGG - Chr7:50283993-50284012 MsG0780038639.01.T01:intron 35.0%
GTGACATATACAGAGAGAAA+TGG - Chr7:50281176-50281195 MsG0780038639.01.T01:three_prime_UTR 35.0%
TAGGAAATCGGAGAAGAAAA+TGG + Chr7:50284717-50284736 None:intergenic 35.0%
TATCTTAGACCATCTCCAAT+GGG - Chr7:50283754-50283773 MsG0780038639.01.T01:intron 35.0%
TCAATGTGTATGGAATCAGT+TGG - Chr7:50282257-50282276 MsG0780038639.01.T01:intron 35.0%
TCAGAAATGTGGAAGAATAG+AGG - Chr7:50282828-50282847 MsG0780038639.01.T01:intron 35.0%
TTACTTTGTCCCTACTGAAA+AGG + Chr7:50281815-50281834 None:intergenic 35.0%
TTTAAGGAGAAAAAGGGCAA+AGG + Chr7:50284745-50284764 None:intergenic 35.0%
! AAGAACATTGACAAGTTGAC+AGG + Chr7:50284834-50284853 None:intergenic 35.0%
! ACAATGGAGACATCCATTTT+TGG + Chr7:50284077-50284096 None:intergenic 35.0%
! TCATCCATAAACTTAGGTTG+TGG + Chr7:50284507-50284526 None:intergenic 35.0%
! TGCCCTTTTTCTCCTTAAAA+TGG - Chr7:50284746-50284765 MsG0780038639.01.T01:five_prime_UTR 35.0%
! TGCTATAGTGTACTTTTGGA+AGG - Chr7:50282299-50282318 MsG0780038639.01.T01:intron 35.0%
!! AATTCTAAGAGCATCCACAA+TGG + Chr7:50284093-50284112 None:intergenic 35.0%
!! ACATAAGGAGTATCACCATA+AGG + Chr7:50281273-50281292 None:intergenic 35.0%
!! CAATGGAGACATCCATTTTT+GGG + Chr7:50284076-50284095 None:intergenic 35.0%
!! GACCTTTTGAAAGGAATTGA+TGG - Chr7:50284543-50284562 MsG0780038639.01.T01:intron 35.0%
!! GTAGTTTGTCTTTTGCATGT+AGG + Chr7:50284271-50284290 None:intergenic 35.0%
!! TCTGTTTCTCCTCTTTTTCA+GGG + Chr7:50281140-50281159 None:intergenic 35.0%
!! TTCTGTTTCTCCTCTTTTTC+AGG + Chr7:50281141-50281160 None:intergenic 35.0%
!!! CTTGATGATGACCTTTTGAA+AGG - Chr7:50284534-50284553 MsG0780038639.01.T01:intron 35.0%
!!! TGACACTATTGTTTTAGTCC+CGG - Chr7:50283156-50283175 MsG0780038639.01.T01:intron 35.0%
AAGAAGACTTCCCATCTTTG+AGG - Chr7:50284596-50284615 MsG0780038639.01.T01:CDS 40.0%
AAGACTTATCTACCAAGGTG+AGG - Chr7:50282879-50282898 MsG0780038639.01.T01:intron 40.0%
AATCAATGCTGGAGACAAAG+TGG - Chr7:50282323-50282342 MsG0780038639.01.T01:intron 40.0%
AGAGATTCAGTGAAAATGGG+GGG + Chr7:50281091-50281110 None:intergenic 40.0%
ATGTGTATGGAATCAGTTGG+TGG - Chr7:50282260-50282279 MsG0780038639.01.T01:intron 40.0%
CAAAGTGGATAGTGCTCTAA+AGG - Chr7:50282338-50282357 MsG0780038639.01.T01:intron 40.0%
CAGGGAATCTTTCAGATTCA+AGG - Chr7:50282014-50282033 MsG0780038639.01.T01:intron 40.0%
CATACGTGACAGATTCAACT+AGG + Chr7:50281499-50281518 None:intergenic 40.0%
CATGCACCTTATGATGAAGA+TGG + Chr7:50281115-50281134 None:intergenic 40.0%
CTAGGTCAAGTAATATGGGA+CGG + Chr7:50281481-50281500 None:intergenic 40.0%
CTATCTTAGACCATCTCCAA+TGG - Chr7:50283753-50283772 MsG0780038639.01.T01:intron 40.0%
CTTGCCACAACCTAAGTTTA+TGG - Chr7:50284500-50284519 MsG0780038639.01.T01:intron 40.0%
CTTTGTCGTCCTTCCATTAA+AGG + Chr7:50282905-50282924 None:intergenic 40.0%
GAATATAGGCAGTAAAAGCC+AGG - Chr7:50281868-50281887 MsG0780038639.01.T01:intron 40.0%
GACTTGATTTCATCAGAACC+TGG + Chr7:50284438-50284457 None:intergenic 40.0%
GAGAGATTCAGTGAAAATGG+GGG + Chr7:50281092-50281111 None:intergenic 40.0%
GATGCTACGCCTGTTATATA+CGG - Chr7:50281978-50281997 MsG0780038639.01.T01:intron 40.0%
GCAAGAAACAGCAAGACTAT+TGG - Chr7:50282966-50282985 MsG0780038639.01.T01:CDS 40.0%
GGAAGTCTTCTTGATCTAGT+TGG + Chr7:50284588-50284607 None:intergenic 40.0%
GGAGAGATTCAGTGAAAATG+GGG + Chr7:50281093-50281112 None:intergenic 40.0%
GGCTACAAGCAAAAACAAAG+TGG - Chr7:50283720-50283739 MsG0780038639.01.T01:intron 40.0%
GGGAGAGATTCAGTGAAAAT+GGG + Chr7:50281094-50281113 None:intergenic 40.0%
TCTCTCCCATCTTCATCATA+AGG - Chr7:50281106-50281125 MsG0780038639.01.T01:three_prime_UTR 40.0%
TGGAAAAGATTCTCCCCAAT+GGG + Chr7:50283820-50283839 None:intergenic 40.0%
TGGGAGAGATTCAGTGAAAA+TGG + Chr7:50281095-50281114 None:intergenic 40.0%
TGTTTAGGGAAACTTGGGTT+GGG - Chr7:50284245-50284264 MsG0780038639.01.T01:intron 40.0%
TTGTTTAGGGAAACTTGGGT+TGG - Chr7:50284244-50284263 MsG0780038639.01.T01:intron 40.0%
! AAACTTAGGTTGTGGCAAGT+TGG + Chr7:50284499-50284518 None:intergenic 40.0%
! ATTCGTACATGGACTAAAGC+AGG + Chr7:50283277-50283296 None:intergenic 40.0%
! ATTGGGGAGAATCTTTTCCA+GGG - Chr7:50283820-50283839 MsG0780038639.01.T01:intron 40.0%
! ATTGTCTTAGGTCTAGGGTT+GGG - Chr7:50284683-50284702 MsG0780038639.01.T01:five_prime_UTR 40.0%
! ATTTTTGTGAGATGCTGGGT+TGG - Chr7:50283972-50283991 MsG0780038639.01.T01:intron 40.0%
! GGCTAAATTCAAAGCCTTGT+TGG + Chr7:50284343-50284362 None:intergenic 40.0%
! GGTCTTAACCATTTAAGACC+CGG - Chr7:50283779-50283798 MsG0780038639.01.T01:intron 40.0%
! TATTGTCTTAGGTCTAGGGT+TGG - Chr7:50284682-50284701 MsG0780038639.01.T01:five_prime_UTR 40.0%
! TTTAAGACCCGGTACCTATT+AGG - Chr7:50283790-50283809 MsG0780038639.01.T01:intron 40.0%
!! AATAGGTACCGGGTCTTAAA+TGG + Chr7:50283790-50283809 None:intergenic 40.0%
!! GCATGTTTGGCTTTGACATA+AGG + Chr7:50281288-50281307 None:intergenic 40.0%
!! GGATAGTGCTCTAAAGGATA+TGG - Chr7:50282344-50282363 MsG0780038639.01.T01:intron 40.0%
!! TTAAGACCCCCACTTTTAAG+CGG - Chr7:50283866-50283885 MsG0780038639.01.T01:intron 40.0%
!! TTTTGGAAGGCAATCAATGC+TGG - Chr7:50282312-50282331 MsG0780038639.01.T01:intron 40.0%
AAACTACATGATGGCTGAGG+TGG - Chr7:50284284-50284303 MsG0780038639.01.T01:intron 45.0%
AAAGCCAAACATGCTCAGGT+AGG - Chr7:50281294-50281313 MsG0780038639.01.T01:CDS 45.0%
AAGGTGAGGCCTTTAATGGA+AGG - Chr7:50282893-50282912 MsG0780038639.01.T01:CDS 45.0%
AATGGTTAAGACCCTCCCAT+TGG + Chr7:50283772-50283791 None:intergenic 45.0%
ACCGGACATGATATTGACAC+CGG - Chr7:50282652-50282671 MsG0780038639.01.T01:intron 45.0%
ACCTATTAGGTACCCCCATT+GGG - Chr7:50283803-50283822 MsG0780038639.01.T01:intron 45.0%
AGTACCTACCTGAGCATGTT+TGG + Chr7:50281301-50281320 None:intergenic 45.0%
ATCATGTCCGGTGTCTGTAT+CGG + Chr7:50282644-50282663 None:intergenic 45.0%
CTGGAAAAGATTCTCCCCAA+TGG + Chr7:50283821-50283840 None:intergenic 45.0%
GAAAAGATTCTCCCCAATGG+GGG + Chr7:50283818-50283837 None:intergenic 45.0%
GACAAACTACATGATGGCTG+AGG - Chr7:50284281-50284300 MsG0780038639.01.T01:intron 45.0%
GATAGATGCTGATGCCAACA+AGG - Chr7:50284326-50284345 MsG0780038639.01.T01:intron 45.0%
GCAAAGCAGGTATATTTGCG+AGG - Chr7:50283524-50283543 MsG0780038639.01.T01:CDS 45.0%
GCCATGTGTCATGTCATACA+AGG + Chr7:50282725-50282744 None:intergenic 45.0%
GCCTTGTATGACATGACACA+TGG - Chr7:50282721-50282740 MsG0780038639.01.T01:intron 45.0%
GGAAAAGATTCTCCCCAATG+GGG + Chr7:50283819-50283838 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+GGG - Chr7:50281706-50281725 MsG0780038639.01.T01:intron 45.0%
GTCAAGTAATATGGGACGGA+GGG + Chr7:50281725-50281706 None:intergenic 45.0%
TACCAAGGTGAGGCCTTTAA+TGG - Chr7:50282889-50282908 MsG0780038639.01.T01:CDS 45.0%
TACCTATTAGGTACCCCCAT+TGG - Chr7:50283802-50283821 MsG0780038639.01.T01:intron 45.0%
TGTCAAAGCCAAACATGCTC+AGG - Chr7:50281290-50281309 MsG0780038639.01.T01:CDS 45.0%
TTAGACCATCTCCAATGGGA+GGG - Chr7:50283758-50283777 MsG0780038639.01.T01:intron 45.0%
TTCCATTAAAGGCCTCACCT+TGG + Chr7:50282894-50282913 None:intergenic 45.0%
! ACCGGTGTCAATATCATGTC+CGG + Chr7:50282656-50282675 None:intergenic 45.0%
! CATTGGGGAGAATCTTTTCC+AGG - Chr7:50283819-50283838 MsG0780038639.01.T01:intron 45.0%
! GTTTTGCAAGGAAAGCTTCC+AGG - Chr7:50284417-50284436 MsG0780038639.01.T01:intron 45.0%
! TTCCAGGGTCTTATAAGACC+CGG - Chr7:50283835-50283854 MsG0780038639.01.T01:intron 45.0%
!! TAAGACCCCCACTTTTAAGC+GGG - Chr7:50283867-50283886 MsG0780038639.01.T01:intron 45.0%
!! AATAACTTAAAAATAATAAA+AGG + Chr7:50282115-50282134 None:intergenic 5.0%
!!! ATTAAAAACATATTTTTATA+AGG - Chr7:50283553-50283572 MsG0780038639.01.T01:CDS 5.0%
ACAAAGACTGCTCGCTCTCA+TGG - Chr7:50282919-50282938 MsG0780038639.01.T01:CDS 50.0%
CCTATTAGGTACCCCCATTG+GGG - Chr7:50283804-50283823 MsG0780038639.01.T01:intron 50.0%
CTTAGACCATCTCCAATGGG+AGG - Chr7:50283757-50283776 MsG0780038639.01.T01:intron 50.0%
GGTCAAGTAATATGGGACGG+AGG - Chr7:50281705-50281724 MsG0780038639.01.T01:intron 50.0%
GGTCAAGTAATATGGGACGG+AGG + Chr7:50281724-50281705 None:intergenic 50.0%
GTGCATGTGCCCTGAAAAAG+AGG - Chr7:50281128-50281147 MsG0780038639.01.T01:three_prime_UTR 50.0%
TAAGACCCTCCCATTGGAGA+TGG + Chr7:50283766-50283785 None:intergenic 50.0%
TGAGGGACCCGCTTAAAAGT+GGG + Chr7:50283877-50283896 None:intergenic 50.0%
! TCCAGGGTCTTATAAGACCC+GGG - Chr7:50283836-50283855 MsG0780038639.01.T01:intron 50.0%
!! GAAAGCACCGATACAGACAC+CGG - Chr7:50282634-50282653 MsG0780038639.01.T01:intron 50.0%
!! TGGGGGTACCTAATAGGTAC+CGG + Chr7:50283801-50283820 None:intergenic 50.0%
AGGGACCCGCTTAAAAGTGG+GGG + Chr7:50283875-50283894 None:intergenic 55.0%
GAGGGACCCGCTTAAAAGTG+GGG + Chr7:50283876-50283895 None:intergenic 55.0%
GGGGGTCTTAAGTAAGACCC+CGG + Chr7:50283857-50283876 None:intergenic 55.0%
GGGGTCTTAAGTAAGACCCC+GGG + Chr7:50283856-50283875 None:intergenic 55.0%
GTGAGGGACCCGCTTAAAAG+TGG + Chr7:50283878-50283897 None:intergenic 55.0%
! CCAGGGTCTTATAAGACCCG+GGG - Chr7:50283837-50283856 MsG0780038639.01.T01:intron 55.0%
!! CCCCAATGGGGGTACCTAAT+AGG + Chr7:50283807-50283826 None:intergenic 55.0%
!! GGGGGTACCTAATAGGTACC+GGG + Chr7:50283800-50283819 None:intergenic 55.0%
! CCCCGGGTCTTATAAGACCC+TGG + Chr7:50283840-50283859 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 50281015 50284859 50281015 ID=MsG0780038639.01;Name=MsG0780038639.01
Chr7 mRNA 50281015 50284859 50281015 ID=MsG0780038639.01.T01;Parent=MsG0780038639.01;Name=MsG0780038639.01.T01;_AED=0.48;_eAED=0.48;_QI=180|1|1|1|1|1|4|206|295
Chr7 exon 50281015 50281622 50281015 ID=MsG0780038639.01.T01:exon:14737;Parent=MsG0780038639.01.T01
Chr7 exon 50282887 50283042 50282887 ID=MsG0780038639.01.T01:exon:14736;Parent=MsG0780038639.01.T01
Chr7 exon 50283386 50283598 50283386 ID=MsG0780038639.01.T01:exon:14735;Parent=MsG0780038639.01.T01
Chr7 exon 50284563 50284859 50284563 ID=MsG0780038639.01.T01:exon:14734;Parent=MsG0780038639.01.T01
Chr7 five_prime_UTR 50284680 50284859 50284680 ID=MsG0780038639.01.T01:five_prime_utr;Parent=MsG0780038639.01.T01
Chr7 CDS 50284563 50284679 50284563 ID=MsG0780038639.01.T01:cds;Parent=MsG0780038639.01.T01
Chr7 CDS 50283386 50283598 50283386 ID=MsG0780038639.01.T01:cds;Parent=MsG0780038639.01.T01
Chr7 CDS 50282887 50283042 50282887 ID=MsG0780038639.01.T01:cds;Parent=MsG0780038639.01.T01
Chr7 CDS 50281221 50281622 50281221 ID=MsG0780038639.01.T01:cds;Parent=MsG0780038639.01.T01
Chr7 three_prime_UTR 50281015 50281220 50281015 ID=MsG0780038639.01.T01:three_prime_utr;Parent=MsG0780038639.01.T01
Gene Sequence

>MsG0780038639.01.T01

ATGGAAGGAATTAGTGTATTGAAGAAAAGTTCTAAAGGAAAGAAAGAAGATCTCTATCATGTTATTCATAAGGTTCCTTATGGTGATACTCCTTATGTCAAAGCCAAACATGCTCAGTTGGTGGATAAAGATCCAGAAGTTGCTATAGTGTACTTTTGGAAGGCAATCAATGCTGGAGACAAAGTGGATAGTGCTCTAAAGGATATGGCTGTTGTGATGAAGCAATTAGATAGAGCTGAAGAAGCTATTGAAGCTATCAAATCTTTTAGAGGTCTTTGCAACAAACATTCTCAAGAGTCACTTGATAATGTACTTCTTGATCTTTACAAGAAATGTGGAAGAATAGAGGAGCAAATTGAATTATTGAAAAGAAAGCTAAGACTTATCTACCAAGGTGAGGCCTTTAATGGAAGGACGACAAAGACTGCTCGCTCTCATGGCAAGAAGTTCCAAGTTTCTATCAAGCAAGAAACAGCAAGACTATTGGGAAACTTGGGTTGGGCCTACATGCAAAAGACAAACTACATGATGGCTGAGGTGGTTTTCAAGAAAGCACAAATGATAGATGCTGATGCCAACAAGGCTTTGAATTTAGCCTTATGCTTAATGAGACAATCTCGTTATGAGGAAGCCTATTTAATTCTTGAACAAGTTTTGCAAGGAAAGCTTCCAGGTTCTGATGAAATCAAGTCCAGAAATAGAGCTGAAGAATTGCTTGTTGAATTGAATGCCAACTTGCCACAACCTAAGTTTATGGATGATTTAGGGCTTGATGATGACCTTTTGAAAGGAATTGATGGATTACTTAATGTTTGGAGTCCAACTAGATCAAGAAGACTTCCCATCTTTGAGGAAATATCTTCTTTTAGAGATCAATTGGCATGTTAA
Protein sequence

>MsG0780038639.01.T01

MEGISVLKKSSKGKKEDLYHVIHKVPYGDTPYVKAKHAQLVDKDPEVAIVYFWKAINAGDKVDSALKDMAVVMKQLDRAEEAIEAIKSFRGLCNKHSQESLDNVLLDLYKKCGRIEEQIELLKRKLRLIYQGEAFNGRTTKTARSHGKKFQVSIKQETARLLGNLGWAYMQKTNYMMAEVVFKKAQMIDADANKALNLALCLMRQSRYEEAYLILEQVLQGKLPGSDEIKSRNRAEELLVELNANLPQPKFMDDLGLDDDLLKGIDGLLNVWSPTRSRRLPIFEEISSFRDQLAC*