Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038786.01.T01 | XP_013448876.1 | 96.797 | 281 | 9 | 0 | 8 | 288 | 21 | 301 | 0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038786.01.T01 | Q09893 | 39.683 | 126 | 72 | 3 | 8 | 130 | 11 | 135 | 8.31E-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038786.01.T01 | I3S857 | 96.797 | 281 | 9 | 0 | 8 | 288 | 21 | 301 | 0.0 | 567 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005758.01 | MsG0780038786.01 | -0.814030 | 1.896018e-51 | 1.258218e-48 |
| MsG0380016975.01 | MsG0780038786.01 | 0.804057 | 2.592671e-49 | 1.323843e-46 |
| MsG0280007902.01 | MsG0780038786.01 | 0.828584 | 8.290310e-55 | 8.275186e-52 |
| MsG0780038786.01 | MsG0780039634.01 | 0.818156 | 2.270022e-52 | 1.686030e-49 |
| MsG0780038786.01 | MsG0880042921.01 | 0.811276 | 7.591571e-51 | 4.678952e-48 |
| MsG0780038786.01 | MsG0880045772.01 | 0.840567 | 8.046964e-58 | 1.150782e-54 |
| MsG0780038786.01 | MsG0880046227.01 | -0.800473 | 1.417702e-48 | 6.606865e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0780038786.01 | MsG0180005624.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038786.01.T01 | MTR_7g062150 | 96.797 | 281 | 9 | 0 | 8 | 288 | 21 | 301 | 0.0 | 567 |
| MsG0780038786.01.T01 | MTR_4g021800 | 84.752 | 282 | 35 | 3 | 8 | 288 | 22 | 296 | 4.72e-170 | 473 |
| MsG0780038786.01.T01 | MTR_4g021800 | 85.659 | 258 | 29 | 3 | 32 | 288 | 1 | 251 | 4.23e-156 | 435 |
| MsG0780038786.01.T01 | MTR_4g021825 | 74.823 | 282 | 70 | 1 | 8 | 288 | 43 | 324 | 7.24e-154 | 432 |
| MsG0780038786.01.T01 | MTR_7g062150 | 95.714 | 210 | 9 | 0 | 8 | 217 | 21 | 230 | 1.16e-151 | 424 |
| MsG0780038786.01.T01 | MTR_4g021800 | 83.886 | 211 | 29 | 2 | 8 | 217 | 22 | 228 | 1.00e-122 | 350 |
| MsG0780038786.01.T01 | MTR_2g097520 | 54.965 | 282 | 116 | 2 | 8 | 288 | 20 | 291 | 8.02e-105 | 307 |
| MsG0780038786.01.T01 | MTR_4g064380 | 55.319 | 282 | 104 | 4 | 8 | 288 | 21 | 281 | 1.18e-104 | 306 |
| MsG0780038786.01.T01 | MTR_1g085570 | 49.291 | 282 | 95 | 2 | 7 | 288 | 17 | 250 | 1.63e-93 | 277 |
| MsG0780038786.01.T01 | MTR_1g085570 | 49.466 | 281 | 94 | 2 | 8 | 288 | 25 | 257 | 2.18e-93 | 277 |
| MsG0780038786.01.T01 | MTR_1g085570 | 49.466 | 281 | 94 | 2 | 8 | 288 | 17 | 249 | 3.50e-93 | 276 |
| MsG0780038786.01.T01 | MTR_1g085570 | 49.138 | 232 | 70 | 2 | 8 | 239 | 17 | 200 | 3.84e-74 | 226 |
| MsG0780038786.01.T01 | MTR_1g104610 | 44.906 | 265 | 102 | 3 | 8 | 270 | 16 | 238 | 8.91e-73 | 224 |
| MsG0780038786.01.T01 | MTR_1g104610 | 46.983 | 232 | 81 | 2 | 8 | 239 | 16 | 205 | 8.47e-65 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038786.01.T01 | AT5G02230 | 69.149 | 282 | 64 | 2 | 8 | 288 | 21 | 280 | 5.91e-132 | 375 |
| MsG0780038786.01.T01 | AT5G02230 | 69.149 | 282 | 64 | 2 | 8 | 288 | 21 | 280 | 5.91e-132 | 375 |
| MsG0780038786.01.T01 | AT5G02230 | 69.149 | 282 | 64 | 2 | 8 | 288 | 58 | 317 | 1.78e-131 | 375 |
| MsG0780038786.01.T01 | AT5G59480 | 55.197 | 279 | 104 | 2 | 8 | 284 | 21 | 280 | 8.78e-108 | 314 |
| MsG0780038786.01.T01 | AT5G59480 | 55.197 | 279 | 104 | 2 | 8 | 284 | 21 | 280 | 8.78e-108 | 314 |
| MsG0780038786.01.T01 | AT5G59480 | 55.197 | 279 | 104 | 2 | 8 | 284 | 21 | 280 | 8.78e-108 | 314 |
| MsG0780038786.01.T01 | AT5G59480 | 55.197 | 279 | 104 | 2 | 8 | 284 | 21 | 280 | 8.78e-108 | 314 |
| MsG0780038786.01.T01 | AT5G59480 | 55.197 | 279 | 103 | 3 | 8 | 284 | 21 | 279 | 9.39e-106 | 309 |
| MsG0780038786.01.T01 | AT5G59490 | 54.895 | 286 | 88 | 4 | 8 | 288 | 17 | 266 | 4.19e-97 | 286 |
| MsG0780038786.01.T01 | AT3G62040 | 51.538 | 260 | 75 | 5 | 32 | 288 | 1 | 212 | 2.69e-83 | 249 |
| MsG0780038786.01.T01 | AT2G32150 | 46.360 | 261 | 99 | 3 | 8 | 268 | 12 | 231 | 6.13e-79 | 240 |
| MsG0780038786.01.T01 | AT5G59490 | 56.034 | 232 | 66 | 3 | 8 | 239 | 17 | 212 | 2.98e-75 | 229 |
| MsG0780038786.01.T01 | AT2G32150 | 46.983 | 232 | 82 | 3 | 8 | 239 | 12 | 202 | 8.41e-66 | 205 |
| MsG0780038786.01.T01 | AT2G32150 | 45.755 | 212 | 74 | 3 | 8 | 219 | 12 | 182 | 2.04e-57 | 182 |
Find 70 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAAATATTTGATATTAT+TGG | 0.138096 | 7:-53053864 | MsG0780038786.01.T01:CDS |
| GAACAACTATGGCTGGTTTA+AGG | 0.158157 | 7:-53054781 | MsG0780038786.01.T01:CDS |
| GGCCAATAATATCAAATATT+TGG | 0.189719 | 7:+53053862 | None:intergenic |
| TCCGAAGGTTTGCAAATAAT+TGG | 0.190370 | 7:+53053798 | None:intergenic |
| CCATTGATTTATAGATTATA+TGG | 0.220325 | 7:-53054870 | MsG0780038786.01.T01:intron |
| TCTTGCTAAGCCTCCCTTAT+AGG | 0.226837 | 7:-53054336 | MsG0780038786.01.T01:CDS |
| GAGAGGCAGTGCCAGAATTA+TGG | 0.244343 | 7:-53052888 | MsG0780038786.01.T01:CDS |
| AAACTTACTAGTTTCCTATA+AGG | 0.248483 | 7:+53054322 | None:intergenic |
| ATTTCAGATTCCCATAATTC+TGG | 0.252639 | 7:+53052877 | None:intergenic |
| TTGCAAATAATTGGTGTCTT+TGG | 0.268860 | 7:+53053807 | None:intergenic |
| ATAAGTACACAAGACCTAAA+AGG | 0.274516 | 7:+53052543 | None:intergenic |
| AGCAAGAGGTTCCTTAGAAT+TGG | 0.290543 | 7:+53054352 | None:intergenic |
| GGTAAATCACAGAGAATTAA+AGG | 0.311037 | 7:-53052946 | MsG0780038786.01.T01:CDS |
| AGGAGCTACTTAATCAATTA+TGG | 0.315918 | 7:-53052726 | MsG0780038786.01.T01:three_prime_UTR |
| GCATGTGGACAAAATATTAA+AGG | 0.327206 | 7:-53054989 | MsG0780038786.01.T01:intron |
| TGAAGCCAGACCCAATTCTA+AGG | 0.354368 | 7:-53054363 | MsG0780038786.01.T01:CDS |
| GAAGAAGATATTGAGTTTGT+AGG | 0.359501 | 7:-53053930 | MsG0780038786.01.T01:CDS |
| AACAACTATGGCTGGTTTAA+GGG | 0.377629 | 7:-53054780 | MsG0780038786.01.T01:intron |
| TTGGATTGGATTGTGCAAAA+TGG | 0.380576 | 7:+53053841 | None:intergenic |
| AGAGGCAGTGCCAGAATTAT+GGG | 0.383627 | 7:-53052887 | MsG0780038786.01.T01:CDS |
| ATTCTGGCACTGCCTCTCTA+AGG | 0.393934 | 7:+53052893 | None:intergenic |
| AACTTACTAGTTTCCTATAA+GGG | 0.397060 | 7:+53054323 | None:intergenic |
| TTGTGGTCAATTTAGGCAAT+TGG | 0.398955 | 7:-53054585 | MsG0780038786.01.T01:intron |
| GTCTCCACAGCAAGCTTGTT+AGG | 0.401994 | 7:+53052835 | None:intergenic |
| ACCAATTATTTGCAAACCTT+CGG | 0.402223 | 7:-53053799 | MsG0780038786.01.T01:CDS |
| GCAAGAGGTTCCTTAGAATT+GGG | 0.408266 | 7:+53054353 | None:intergenic |
| GTCTTTGGCAACACTTCACT+TGG | 0.416899 | 7:+53053822 | None:intergenic |
| AAGGTTGTGGATGCTTTCTA+AGG | 0.423337 | 7:+53052912 | None:intergenic |
| TTTGCAATACCACAGCTTAG+TGG | 0.425245 | 7:+53055013 | None:intergenic |
| TGGCAACACTTCACTTGGAT+TGG | 0.430282 | 7:+53053827 | None:intergenic |
| AGTTCTTTGTGGGTCAAGAT+TGG | 0.432122 | 7:+53053746 | None:intergenic |
| TCTGGCTTCAAATTCTCATA+TGG | 0.444951 | 7:+53054376 | None:intergenic |
| ATGCAGTTAAGGCACTAAAC+AGG | 0.445452 | 7:-53054034 | MsG0780038786.01.T01:CDS |
| AGGTTCCTTAGAATTGGGTC+TGG | 0.448378 | 7:+53054358 | None:intergenic |
| AACTATGGAACAACTATGGC+TGG | 0.456420 | 7:-53054788 | MsG0780038786.01.T01:CDS |
| AGAAACAATGTTCTTGTGGA+TGG | 0.458564 | 7:+53053959 | None:intergenic |
| AGACAAAGTTCATGCAGTTA+AGG | 0.463592 | 7:-53054045 | MsG0780038786.01.T01:CDS |
| TAAGTACACAAGACCTAAAA+GGG | 0.465001 | 7:+53052544 | None:intergenic |
| ACTAGTACTTGTGGTATGAT+TGG | 0.466261 | 7:+53053896 | None:intergenic |
| TCTGAAATTAAATCAGAAGT+TGG | 0.466334 | 7:-53052862 | MsG0780038786.01.T01:CDS |
| GATTATATGGTTGAGAAGCT+TGG | 0.473494 | 7:-53054857 | MsG0780038786.01.T01:CDS |
| GCACTGCCTCTCTAAGGTTG+TGG | 0.491454 | 7:+53052899 | None:intergenic |
| GGAGACATCTGTGACTGCTT+AGG | 0.506170 | 7:-53052818 | MsG0780038786.01.T01:exon |
| TGCATGAACTTTGTCTGCAT+TGG | 0.507933 | 7:+53054052 | None:intergenic |
| AATAACTACATCTCAACAAA+GGG | 0.514379 | 7:+53052670 | None:intergenic |
| GAAACAATGTTCTTGTGGAT+GGG | 0.521885 | 7:+53053960 | None:intergenic |
| CATCAGAAACAATGTTCTTG+TGG | 0.527810 | 7:+53053955 | None:intergenic |
| GTTAAGGCACTAAACAGGCT+TGG | 0.537369 | 7:-53054029 | MsG0780038786.01.T01:CDS |
| AGTGCAAGAAACATACAAGC+TGG | 0.549461 | 7:-53053121 | MsG0780038786.01.T01:CDS |
| TTCGGAATATGCCATTGAGT+TGG | 0.549934 | 7:-53053781 | MsG0780038786.01.T01:CDS |
| AGCGCAGCTTCGTTGCTACA+AGG | 0.565890 | 7:-53052746 | MsG0780038786.01.T01:three_prime_UTR |
| TATCTTGAGAGCCAACTCAA+TGG | 0.573981 | 7:+53053770 | None:intergenic |
| GCGCTACCCGTGCTGTAGCA+CGG | 0.577815 | 7:+53052764 | None:intergenic |
| AACTCAATGGCATATTCCGA+AGG | 0.590798 | 7:+53053783 | None:intergenic |
| TGTGGGACTTGACACTGTGC+TGG | 0.591732 | 7:-53053092 | MsG0780038786.01.T01:intron |
| CAATAACTACATCTCAACAA+AGG | 0.593676 | 7:+53052669 | None:intergenic |
| GAGATATCCGTGCTACAGCA+CGG | 0.605796 | 7:-53052771 | MsG0780038786.01.T01:three_prime_UTR |
| TTATCCTAACAAGCTTGCTG+TGG | 0.609017 | 7:-53052839 | MsG0780038786.01.T01:CDS |
| TTGACTATGATGAATATCAC+AGG | 0.610280 | 7:-53054554 | MsG0780038786.01.T01:intron |
| AGATATCCGTGCTACAGCAC+GGG | 0.611898 | 7:-53052770 | MsG0780038786.01.T01:three_prime_UTR |
| TTACTAGTTTCCTATAAGGG+AGG | 0.612508 | 7:+53054326 | None:intergenic |
| GTGCAAGAAACATACAAGCT+GGG | 0.613254 | 7:-53053120 | MsG0780038786.01.T01:CDS |
| TATAAGGGAGGCTTAGCAAG+AGG | 0.623743 | 7:+53054338 | None:intergenic |
| GTTACTACCACTAGTACTTG+TGG | 0.630315 | 7:+53053887 | None:intergenic |
| CATACAAGCTGGGAAACGTG+TGG | 0.635233 | 7:-53053110 | MsG0780038786.01.T01:CDS |
| ATACAAGCTGGGAAACGTGT+GGG | 0.639764 | 7:-53053109 | MsG0780038786.01.T01:CDS |
| AATCATACCACAAGTACTAG+TGG | 0.639846 | 7:-53053894 | MsG0780038786.01.T01:CDS |
| ACTTTGTATCCACTAAGCTG+TGG | 0.665300 | 7:-53055022 | MsG0780038786.01.T01:CDS |
| AAGCATCCACAACCTTAGAG+AGG | 0.675174 | 7:-53052905 | MsG0780038786.01.T01:CDS |
| TGTGGTATTGCAAAAGCATG+TGG | 0.705500 | 7:-53055004 | MsG0780038786.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGACAAAAAAAACAAATT+AGG | + | Chr7:53054437-53054456 | None:intergenic | 15.0% |
| !! | ATAACATAATGTCAATAATT+TGG | + | Chr7:53054581-53054600 | None:intergenic | 15.0% |
| !! | TTACTTCCTATAATAAAAAT+CGG | - | Chr7:53054046-53054065 | MsG0780038786.01.T01:CDS | 15.0% |
| !! | TTCCAAATATTTGATATTAT+TGG | - | Chr7:53053742-53053761 | MsG0780038786.01.T01:intron | 15.0% |
| !!! | AAATATTAAATTTCCCTTTT+AGG | - | Chr7:53055049-53055068 | MsG0780038786.01.T01:CDS | 15.0% |
| !!! | TAAAAACCGATTTTTATTAT+AGG | + | Chr7:53054055-53054074 | None:intergenic | 15.0% |
| !!! | TTTTAATAATCTGTAACAAA+CGG | + | Chr7:53053955-53053974 | None:intergenic | 15.0% |
| !! | CCATATAATCTATAAATCAA+TGG | + | Chr7:53052739-53052758 | None:intergenic | 20.0% |
| !! | TATATAACAAATGTTAGCAA+TGG | + | Chr7:53054544-53054563 | None:intergenic | 20.0% |
| !! | TGTAACAATCAAATAATTAG+AGG | + | Chr7:53054622-53054641 | None:intergenic | 20.0% |
| !!! | ATTTTAATGATGAGTGTATT+AGG | + | Chr7:53053899-53053918 | None:intergenic | 20.0% |
| !!! | CAACTTATGTTTTTTTTTTG+TGG | - | Chr7:53053004-53053023 | MsG0780038786.01.T01:intron | 20.0% |
| !!! | CCATTGATTTATAGATTATA+TGG | - | Chr7:53052736-53052755 | MsG0780038786.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTTTTTTTGTGGTCAATTT+AGG | - | Chr7:53053014-53053033 | MsG0780038786.01.T01:intron | 20.0% |
| ! | AACCATCTTTACAAAAACTA+TGG | - | Chr7:53052803-53052822 | MsG0780038786.01.T01:exon | 25.0% |
| ! | AATAACTACATCTCAACAAA+GGG | + | Chr7:53054939-53054958 | None:intergenic | 25.0% |
| ! | ACGTGTGATTACAAATATTA+AGG | + | Chr7:53054305-53054324 | None:intergenic | 25.0% |
| ! | AGTTATTAAATTTGAGAGTG+TGG | + | Chr7:53053321-53053340 | None:intergenic | 25.0% |
| ! | ATAGGAAAAACACAATAAAG+AGG | + | Chr7:53053525-53053544 | None:intergenic | 25.0% |
| ! | CACATTACTAAGAACATTAT+TGG | + | Chr7:53052657-53052676 | None:intergenic | 25.0% |
| ! | CGTGTGATTACAAATATTAA+GGG | + | Chr7:53054304-53054323 | None:intergenic | 25.0% |
| ! | GGCCAATAATATCAAATATT+TGG | + | Chr7:53053747-53053766 | None:intergenic | 25.0% |
| ! | TAGAAGTGATGTAGTATAAA+AGG | + | Chr7:53053099-53053118 | None:intergenic | 25.0% |
| ! | TGTTACACATCATTGTATAT+AGG | - | Chr7:53054635-53054654 | MsG0780038786.01.T01:intron | 25.0% |
| !! | AAACTTACTAGTTTCCTATA+AGG | + | Chr7:53053287-53053306 | None:intergenic | 25.0% |
| !! | AACTTACTAGTTTCCTATAA+GGG | + | Chr7:53053286-53053305 | None:intergenic | 25.0% |
| !! | ATAGTTTTTGTAAAGATGGT+TGG | + | Chr7:53052804-53052823 | None:intergenic | 25.0% |
| !! | TCATTTTCAGTTATTCTTTG+AGG | - | Chr7:53054460-53054479 | MsG0780038786.01.T01:intron | 25.0% |
| !! | TCTGAAATTAAATCAGAAGT+TGG | - | Chr7:53054744-53054763 | MsG0780038786.01.T01:intron | 25.0% |
| !! | TTCCATAGTTTTTGTAAAGA+TGG | + | Chr7:53052808-53052827 | None:intergenic | 25.0% |
| !! | TTTGATGCATGTAATTTTGT+TGG | - | Chr7:53052687-53052706 | MsG0780038786.01.T01:three_prime_UTR | 25.0% |
| !! | TTTGTAATCACACGTAATTT+TGG | - | Chr7:53054310-53054329 | MsG0780038786.01.T01:intron | 25.0% |
| !!! | CTGCAAACTTTGAAATTTTT+AGG | + | Chr7:53054379-53054398 | None:intergenic | 25.0% |
| !!! | TGTTAATACAGTTTTGTTCA+TGG | - | Chr7:53053200-53053219 | MsG0780038786.01.T01:intron | 25.0% |
| ACACATCATTGTATATAGGT+TGG | - | Chr7:53054639-53054658 | MsG0780038786.01.T01:intron | 30.0% | |
| ACCAATTATTTGCAAACCTT+CGG | - | Chr7:53053807-53053826 | MsG0780038786.01.T01:CDS | 30.0% | |
| AGAAATTAAGCTGAAATCAC+AGG | - | Chr7:53052974-53052993 | MsG0780038786.01.T01:intron | 30.0% | |
| AGGAGCTACTTAATCAATTA+TGG | - | Chr7:53054880-53054899 | MsG0780038786.01.T01:intron | 30.0% | |
| ATTAGAGGCTCATATTTGTT+TGG | + | Chr7:53054607-53054626 | None:intergenic | 30.0% | |
| ATTTAAGCTGAAATTGTCGA+TGG | - | Chr7:53052888-53052907 | MsG0780038786.01.T01:CDS | 30.0% | |
| ATTTCAGATTCCCATAATTC+TGG | + | Chr7:53054732-53054751 | None:intergenic | 30.0% | |
| CAAAAACTATGGAACAACTA+TGG | - | Chr7:53052814-53052833 | MsG0780038786.01.T01:exon | 30.0% | |
| CAATAACTACATCTCAACAA+AGG | + | Chr7:53054940-53054959 | None:intergenic | 30.0% | |
| GAAGAAGATATTGAGTTTGT+AGG | - | Chr7:53053676-53053695 | MsG0780038786.01.T01:intron | 30.0% | |
| GCATGTGGACAAAATATTAA+AGG | - | Chr7:53052617-53052636 | MsG0780038786.01.T01:three_prime_UTR | 30.0% | |
| GGTAAATCACAGAGAATTAA+AGG | - | Chr7:53054660-53054679 | MsG0780038786.01.T01:intron | 30.0% | |
| TTGACTATGATGAATATCAC+AGG | - | Chr7:53053052-53053071 | MsG0780038786.01.T01:intron | 30.0% | |
| TTTAAGCTGAAATTGTCGAT+GGG | - | Chr7:53052889-53052908 | MsG0780038786.01.T01:CDS | 30.0% | |
| ! | GTTTTCTTACAGTTCTTTGT+GGG | + | Chr7:53053873-53053892 | None:intergenic | 30.0% |
| ! | TGTTTTCTTACAGTTCTTTG+TGG | + | Chr7:53053874-53053893 | None:intergenic | 30.0% |
| ! | TTGCAAATAATTGGTGTCTT+TGG | + | Chr7:53053802-53053821 | None:intergenic | 30.0% |
| AATCATACCACAAGTACTAG+TGG | - | Chr7:53053712-53053731 | MsG0780038786.01.T01:intron | 35.0% | |
| ACCGTGGCTACAAATTATAA+CGG | + | Chr7:53054265-53054284 | None:intergenic | 35.0% | |
| ACTAGTACTTGTGGTATGAT+TGG | + | Chr7:53053713-53053732 | None:intergenic | 35.0% | |
| AGAAACAATGTTCTTGTGGA+TGG | + | Chr7:53053650-53053669 | None:intergenic | 35.0% | |
| AGACAAAGTTCATGCAGTTA+AGG | - | Chr7:53053561-53053580 | MsG0780038786.01.T01:intron | 35.0% | |
| CATCAGAAACAATGTTCTTG+TGG | + | Chr7:53053654-53053673 | None:intergenic | 35.0% | |
| GAAACAATGTTCTTGTGGAT+GGG | + | Chr7:53053649-53053668 | None:intergenic | 35.0% | |
| GATTATATGGTTGAGAAGCT+TGG | - | Chr7:53052749-53052768 | MsG0780038786.01.T01:three_prime_UTR | 35.0% | |
| TCCGAAGGTTTGCAAATAAT+TGG | + | Chr7:53053811-53053830 | None:intergenic | 35.0% | |
| TTGTGGTCAATTTAGGCAAT+TGG | - | Chr7:53053021-53053040 | MsG0780038786.01.T01:intron | 35.0% | |
| ! | ATAATTTGTAGCCACGGTTT+AGG | - | Chr7:53054267-53054286 | MsG0780038786.01.T01:intron | 35.0% |
| ! | TCCGTTATAATTTGTAGCCA+CGG | - | Chr7:53054261-53054280 | MsG0780038786.01.T01:intron | 35.0% |
| ! | TCTGGCTTCAAATTCTCATA+TGG | + | Chr7:53053233-53053252 | None:intergenic | 35.0% |
| ! | TTACTAGTTTCCTATAAGGG+AGG | + | Chr7:53053283-53053302 | None:intergenic | 35.0% |
| ! | TTGGATTGGATTGTGCAAAA+TGG | + | Chr7:53053768-53053787 | None:intergenic | 35.0% |
| !! | AACAACTATGGCTGGTTTAA+GGG | - | Chr7:53052826-53052845 | MsG0780038786.01.T01:CDS | 35.0% |
| !!! | GGACTAGAAGATTGTTTTGA+AGG | - | Chr7:53053598-53053617 | MsG0780038786.01.T01:intron | 35.0% |
| AACTATGGAACAACTATGGC+TGG | - | Chr7:53052818-53052837 | MsG0780038786.01.T01:exon | 40.0% | |
| AACTCAATGGCATATTCCGA+AGG | + | Chr7:53053826-53053845 | None:intergenic | 40.0% | |
| AAGGTTGTGGATGCTTTCTA+AGG | + | Chr7:53054697-53054716 | None:intergenic | 40.0% | |
| ACTTTGTATCCACTAAGCTG+TGG | - | Chr7:53052584-53052603 | MsG0780038786.01.T01:three_prime_UTR | 40.0% | |
| AGCAAGAGGTTCCTTAGAAT+TGG | + | Chr7:53053257-53053276 | None:intergenic | 40.0% | |
| AGTGCAAGAAACATACAAGC+TGG | - | Chr7:53054485-53054504 | MsG0780038786.01.T01:intron | 40.0% | |
| AGTTCTTTGTGGGTCAAGAT+TGG | + | Chr7:53053863-53053882 | None:intergenic | 40.0% | |
| ATCAGTCCTCTCGAAATAGT+CGG | - | Chr7:53052912-53052931 | MsG0780038786.01.T01:CDS | 40.0% | |
| GCAAGAGGTTCCTTAGAATT+GGG | + | Chr7:53053256-53053275 | None:intergenic | 40.0% | |
| GTGCAAGAAACATACAAGCT+GGG | - | Chr7:53054486-53054505 | MsG0780038786.01.T01:intron | 40.0% | |
| GTTACTACCACTAGTACTTG+TGG | + | Chr7:53053722-53053741 | None:intergenic | 40.0% | |
| TATCTTGAGAGCCAACTCAA+TGG | + | Chr7:53053839-53053858 | None:intergenic | 40.0% | |
| TGCATGAACTTTGTCTGCAT+TGG | + | Chr7:53053557-53053576 | None:intergenic | 40.0% | |
| TTCGGAATATGCCATTGAGT+TGG | - | Chr7:53053825-53053844 | MsG0780038786.01.T01:CDS | 40.0% | |
| TTTGCAATACCACAGCTTAG+TGG | + | Chr7:53052596-53052615 | None:intergenic | 40.0% | |
| ! | ATGCAGTTAAGGCACTAAAC+AGG | - | Chr7:53053572-53053591 | MsG0780038786.01.T01:intron | 40.0% |
| ! | CTGCATTGGTGAAGATCTAT+AGG | + | Chr7:53053543-53053562 | None:intergenic | 40.0% |
| ! | TGTGGTATTGCAAAAGCATG+TGG | - | Chr7:53052602-53052621 | MsG0780038786.01.T01:three_prime_UTR | 40.0% |
| !! | GAACAACTATGGCTGGTTTA+AGG | - | Chr7:53052825-53052844 | MsG0780038786.01.T01:CDS | 40.0% |
| !! | TTATCCTAACAAGCTTGCTG+TGG | - | Chr7:53054767-53054786 | MsG0780038786.01.T01:intron | 40.0% |
| AAGCATCCACAACCTTAGAG+AGG | - | Chr7:53054701-53054720 | MsG0780038786.01.T01:intron | 45.0% | |
| AGAGGCAGTGCCAGAATTAT+GGG | - | Chr7:53054719-53054738 | MsG0780038786.01.T01:intron | 45.0% | |
| AGGTTCCTTAGAATTGGGTC+TGG | + | Chr7:53053251-53053270 | None:intergenic | 45.0% | |
| ATACAAGCTGGGAAACGTGT+GGG | - | Chr7:53054497-53054516 | MsG0780038786.01.T01:intron | 45.0% | |
| CAAAGTTTGCAGTCAGATCG+TGG | - | Chr7:53054387-53054406 | MsG0780038786.01.T01:CDS | 45.0% | |
| CTAAGACCGACTATTTCGAG+AGG | + | Chr7:53052921-53052940 | None:intergenic | 45.0% | |
| GTCTTTGGCAACACTTCACT+TGG | + | Chr7:53053787-53053806 | None:intergenic | 45.0% | |
| TATAAGGGAGGCTTAGCAAG+AGG | + | Chr7:53053271-53053290 | None:intergenic | 45.0% | |
| TCTTGCTAAGCCTCCCTTAT+AGG | - | Chr7:53053270-53053289 | MsG0780038786.01.T01:intron | 45.0% | |
| TGAAGCCAGACCCAATTCTA+AGG | - | Chr7:53053243-53053262 | MsG0780038786.01.T01:intron | 45.0% | |
| TGGCAACACTTCACTTGGAT+TGG | + | Chr7:53053782-53053801 | None:intergenic | 45.0% | |
| ! | GTTAAGGCACTAAACAGGCT+TGG | - | Chr7:53053577-53053596 | MsG0780038786.01.T01:intron | 45.0% |
| AGATATCCGTGCTACAGCAC+GGG | - | Chr7:53054836-53054855 | MsG0780038786.01.T01:CDS | 50.0% | |
| ATTCTGGCACTGCCTCTCTA+AGG | + | Chr7:53054716-53054735 | None:intergenic | 50.0% | |
| CATACAAGCTGGGAAACGTG+TGG | - | Chr7:53054496-53054515 | MsG0780038786.01.T01:intron | 50.0% | |
| GAGAGGCAGTGCCAGAATTA+TGG | - | Chr7:53054718-53054737 | MsG0780038786.01.T01:intron | 50.0% | |
| GAGATATCCGTGCTACAGCA+CGG | - | Chr7:53054835-53054854 | MsG0780038786.01.T01:CDS | 50.0% | |
| GGAGACATCTGTGACTGCTT+AGG | - | Chr7:53054788-53054807 | MsG0780038786.01.T01:CDS | 50.0% | |
| TTGTGATGCTGCCTAAACCG+TGG | + | Chr7:53054281-53054300 | None:intergenic | 50.0% | |
| ! | GTCTCCACAGCAAGCTTGTT+AGG | + | Chr7:53054774-53054793 | None:intergenic | 50.0% |
| AGCGCAGCTTCGTTGCTACA+AGG | - | Chr7:53054860-53054879 | MsG0780038786.01.T01:intron | 55.0% | |
| TGTGGGACTTGACACTGTGC+TGG | - | Chr7:53054514-53054533 | MsG0780038786.01.T01:intron | 55.0% | |
| !! | GCACTGCCTCTCTAAGGTTG+TGG | + | Chr7:53054710-53054729 | None:intergenic | 55.0% |
| GCGCTACCCGTGCTGTAGCA+CGG | + | Chr7:53054845-53054864 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 53052551 | 53055077 | 53052551 | ID=MsG0780038786.01;Name=MsG0780038786.01 |
| Chr7 | mRNA | 53052551 | 53055077 | 53052551 | ID=MsG0780038786.01.T01;Parent=MsG0780038786.01;Name=MsG0780038786.01.T01;_AED=0.48;_eAED=0.48;_QI=0|1|0.85|1|1|1|7|268|288 |
| Chr7 | exon | 53052551 | 53052971 | 53052551 | ID=MsG0780038786.01.T01:exon:8445;Parent=MsG0780038786.01.T01 |
| Chr7 | exon | 53053093 | 53053158 | 53053093 | ID=MsG0780038786.01.T01:exon:8444;Parent=MsG0780038786.01.T01 |
| Chr7 | exon | 53053746 | 53054081 | 53053746 | ID=MsG0780038786.01.T01:exon:8443;Parent=MsG0780038786.01.T01 |
| Chr7 | exon | 53054330 | 53054417 | 53054330 | ID=MsG0780038786.01.T01:exon:8442;Parent=MsG0780038786.01.T01 |
| Chr7 | exon | 53054555 | 53054592 | 53054555 | ID=MsG0780038786.01.T01:exon:8441;Parent=MsG0780038786.01.T01 |
| Chr7 | exon | 53054781 | 53054878 | 53054781 | ID=MsG0780038786.01.T01:exon:8440;Parent=MsG0780038786.01.T01 |
| Chr7 | exon | 53054990 | 53055077 | 53054990 | ID=MsG0780038786.01.T01:exon:8439;Parent=MsG0780038786.01.T01 |
| Chr7 | CDS | 53054990 | 53055077 | 53054990 | ID=MsG0780038786.01.T01:cds;Parent=MsG0780038786.01.T01 |
| Chr7 | CDS | 53054781 | 53054878 | 53054781 | ID=MsG0780038786.01.T01:cds;Parent=MsG0780038786.01.T01 |
| Chr7 | CDS | 53054555 | 53054592 | 53054555 | ID=MsG0780038786.01.T01:cds;Parent=MsG0780038786.01.T01 |
| Chr7 | CDS | 53054330 | 53054417 | 53054330 | ID=MsG0780038786.01.T01:cds;Parent=MsG0780038786.01.T01 |
| Chr7 | CDS | 53053746 | 53054081 | 53053746 | ID=MsG0780038786.01.T01:cds;Parent=MsG0780038786.01.T01 |
| Chr7 | CDS | 53053093 | 53053158 | 53053093 | ID=MsG0780038786.01.T01:cds;Parent=MsG0780038786.01.T01 |
| Chr7 | CDS | 53052819 | 53052971 | 53052819 | ID=MsG0780038786.01.T01:cds;Parent=MsG0780038786.01.T01 |
| Chr7 | three_prime_UTR | 53052551 | 53052818 | 53052551 | ID=MsG0780038786.01.T01:three_prime_utr;Parent=MsG0780038786.01.T01 |
| Gene Sequence |
| Protein sequence |
