Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005758.01.T01 | XP_013469976.2 | 72.941 | 85 | 16 | 1 | 5 | 89 | 18 | 95 | 6.67E-29 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005758.01.T01 | A0A803PE84 | 71.930 | 57 | 9 | 3 | 5 | 60 | 20 | 70 | 3.19e-17 | 85.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048256.01 | MsG0180005758.01 | 0.820467 | 6.754986e-53 | 5.349295e-50 |
| MsG0080048597.01 | MsG0180005758.01 | 0.817226 | 3.679871e-52 | 2.664292e-49 |
| MsG0080048909.01 | MsG0180005758.01 | -0.814940 | 1.192759e-51 | 8.112097e-49 |
| MsG0080049016.01 | MsG0180005758.01 | -0.825608 | 4.271254e-54 | 3.912188e-51 |
| MsG0080049018.01 | MsG0180005758.01 | -0.801909 | 7.206459e-49 | 3.482928e-46 |
| MsG0180000453.01 | MsG0180005758.01 | -0.802680 | 5.002060e-49 | 2.465337e-46 |
| MsG0180003268.01 | MsG0180005758.01 | -0.800476 | 1.416015e-48 | 6.599532e-46 |
| MsG0180003451.01 | MsG0180005758.01 | -0.803490 | 3.401297e-49 | 1.711527e-46 |
| MsG0180003649.01 | MsG0180005758.01 | -0.809666 | 1.690553e-50 | 9.986430e-48 |
| MsG0180004187.01 | MsG0180005758.01 | -0.824132 | 9.526966e-54 | 8.365195e-51 |
| MsG0180004193.01 | MsG0180005758.01 | -0.815916 | 7.234992e-52 | 5.053718e-49 |
| MsG0180004458.01 | MsG0180005758.01 | -0.822424 | 2.386444e-53 | 1.996779e-50 |
| MsG0180004504.01 | MsG0180005758.01 | -0.804908 | 1.723733e-49 | 8.996862e-47 |
| MsG0180004852.01 | MsG0180005758.01 | -0.820577 | 6.374882e-53 | 5.063253e-50 |
| MsG0180004865.01 | MsG0180005758.01 | -0.834431 | 3.010194e-56 | 3.571582e-53 |
| MsG0180004937.01 | MsG0180005758.01 | -0.834089 | 3.665994e-56 | 4.305121e-53 |
| MsG0180005226.01 | MsG0180005758.01 | -0.803505 | 3.376972e-49 | 1.699963e-46 |
| MsG0180005758.01 | MsG0180005806.01 | -0.824918 | 6.220557e-54 | 5.587043e-51 |
| MsG0180005758.01 | MsG0180005811.01 | -0.800453 | 1.431166e-48 | 6.666329e-46 |
| MsG0180005758.01 | MsG0180006262.01 | -0.822966 | 1.785392e-53 | 1.516944e-50 |
| MsG0180005758.01 | MsG0280006451.01 | -0.859038 | 5.452806e-63 | 1.420218e-59 |
| MsG0180005758.01 | MsG0280006855.01 | 0.827988 | 1.153787e-54 | 1.131949e-51 |
| MsG0180005758.01 | MsG0280007016.01 | -0.809726 | 1.640718e-50 | 9.707535e-48 |
| MsG0180005758.01 | MsG0280007142.01 | -0.847385 | 1.195597e-59 | 2.121467e-56 |
| MsG0180005758.01 | MsG0280007600.01 | -0.828528 | 8.552400e-55 | 8.523132e-52 |
| MsG0180005758.01 | MsG0280007754.01 | -0.815115 | 1.090560e-51 | 7.452199e-49 |
| MsG0180005758.01 | MsG0280007755.01 | -0.824078 | 9.807737e-54 | 8.598677e-51 |
| MsG0180005758.01 | MsG0280007902.01 | -0.822447 | 2.357796e-53 | 1.974025e-50 |
| MsG0180005758.01 | MsG0280009434.01 | -0.802362 | 5.815372e-49 | 2.843343e-46 |
| MsG0180005758.01 | MsG0280010131.01 | -0.852421 | 4.668451e-61 | 9.749009e-58 |
| MsG0180005758.01 | MsG0280010461.01 | -0.837343 | 5.496447e-57 | 7.118473e-54 |
| MsG0180005758.01 | MsG0280010522.01 | -0.802653 | 5.064589e-49 | 2.494472e-46 |
| MsG0180005758.01 | MsG0280010888.01 | 0.816909 | 4.336610e-52 | 3.112713e-49 |
| MsG0180005758.01 | MsG0280010905.01 | -0.813534 | 2.438614e-51 | 1.596715e-48 |
| MsG0180005758.01 | MsG0280011067.01 | -0.802202 | 6.273449e-49 | 3.054521e-46 |
| MsG0180005758.01 | MsG0280011279.01 | -0.800478 | 1.414204e-48 | 6.591512e-46 |
| MsG0180005758.01 | MsG0280011372.01 | -0.844466 | 7.430566e-59 | 1.200603e-55 |
| MsG0180005758.01 | MsG0280011443.01 | -0.825867 | 3.708336e-54 | 3.421893e-51 |
| MsG0180005758.01 | MsG0280011449.01 | -0.825004 | 5.935598e-54 | 5.344245e-51 |
| MsG0180005758.01 | MsG0380013493.01 | -0.808762 | 2.640937e-50 | 1.522819e-47 |
| MsG0180005758.01 | MsG0380013807.01 | -0.801073 | 1.069144e-48 | 5.059308e-46 |
| MsG0180005758.01 | MsG0380014557.01 | -0.830869 | 2.303539e-55 | 2.457935e-52 |
| MsG0180005758.01 | MsG0380014558.01 | -0.837416 | 5.265561e-57 | 6.834972e-54 |
| MsG0180005758.01 | MsG0380015501.01 | -0.837677 | 4.512687e-57 | 5.906058e-54 |
| MsG0180005758.01 | MsG0380015628.01 | -0.823302 | 1.490283e-53 | 1.278222e-50 |
| MsG0180005758.01 | MsG0380015883.01 | -0.808707 | 2.712875e-50 | 1.562026e-47 |
| MsG0180005758.01 | MsG0380016176.01 | 0.832342 | 9.982903e-56 | 1.112520e-52 |
| MsG0180005758.01 | MsG0380017385.01 | -0.816778 | 4.640265e-52 | 3.318752e-49 |
| MsG0180005758.01 | MsG0380017762.01 | -0.802832 | 4.652305e-49 | 2.302098e-46 |
| MsG0180005758.01 | MsG0380017775.01 | -0.839820 | 1.260730e-57 | 1.761648e-54 |
| MsG0180005758.01 | MsG0380017780.01 | 0.805166 | 1.522362e-49 | 7.997904e-47 |
| MsG0180005758.01 | MsG0380018070.01 | 0.837272 | 5.732777e-57 | 7.408145e-54 |
| MsG0180005758.01 | MsG0480018323.01 | -0.807098 | 5.967283e-50 | 3.294290e-47 |
| MsG0180005758.01 | MsG0480018631.01 | -0.805826 | 1.106775e-49 | 5.914138e-47 |
| MsG0180005758.01 | MsG0480018844.01 | -0.869635 | 2.671368e-66 | 1.009606e-62 |
| MsG0180005758.01 | MsG0480018983.01 | -0.853840 | 1.831504e-61 | 4.010923e-58 |
| MsG0180005758.01 | MsG0480019604.01 | -0.842263 | 2.877084e-58 | 4.338421e-55 |
| MsG0180005758.01 | MsG0480019693.01 | -0.805395 | 1.362734e-49 | 7.201556e-47 |
| MsG0180005758.01 | MsG0480020122.01 | -0.802521 | 5.394334e-49 | 2.647848e-46 |
| MsG0180005758.01 | MsG0480021691.01 | -0.807730 | 4.381498e-50 | 2.459132e-47 |
| MsG0180005758.01 | MsG0480021856.01 | -0.845780 | 3.279477e-59 | 5.526787e-56 |
| MsG0180005758.01 | MsG0480022935.01 | -0.804623 | 1.976570e-49 | 1.023961e-46 |
| MsG0180005758.01 | MsG0480022968.01 | 0.809769 | 1.606300e-50 | 9.514891e-48 |
| MsG0180005758.01 | MsG0480023056.01 | -0.806493 | 8.008506e-50 | 4.352893e-47 |
| MsG0180005758.01 | MsG0480023298.01 | -0.811950 | 5.418196e-51 | 3.399740e-48 |
| MsG0180005758.01 | MsG0480023371.01 | -0.812010 | 5.257518e-51 | 3.304263e-48 |
| MsG0180005758.01 | MsG0480023502.01 | -0.848875 | 4.636790e-60 | 8.631293e-57 |
| MsG0180005758.01 | MsG0480023505.01 | -0.800575 | 1.351426e-48 | 6.314516e-46 |
| MsG0180005758.01 | MsG0580024450.01 | -0.803867 | 2.840590e-49 | 1.443349e-46 |
| MsG0180005758.01 | MsG0580024768.01 | -0.804532 | 2.064397e-49 | 1.066965e-46 |
| MsG0180005758.01 | MsG0580025215.01 | -0.837002 | 6.718595e-57 | 8.612161e-54 |
| MsG0180005758.01 | MsG0580025313.01 | -0.806598 | 7.611461e-50 | 4.148096e-47 |
| MsG0180005758.01 | MsG0580027099.01 | -0.803523 | 3.348163e-49 | 1.686284e-46 |
| MsG0180005758.01 | MsG0580028092.01 | -0.849203 | 3.760210e-60 | 7.075463e-57 |
| MsG0180005758.01 | MsG0580028483.01 | -0.823117 | 1.646224e-53 | 1.404732e-50 |
| MsG0180005758.01 | MsG0580029820.01 | -0.854399 | 1.263067e-61 | 2.817023e-58 |
| MsG0180005758.01 | MsG0680030399.01 | -0.817326 | 3.494000e-52 | 2.536724e-49 |
| MsG0180005758.01 | MsG0680030878.01 | -0.800740 | 1.250664e-48 | 5.868180e-46 |
| MsG0180005758.01 | MsG0680030879.01 | -0.818338 | 2.064612e-52 | 1.541271e-49 |
| MsG0180005758.01 | MsG0680031791.01 | -0.858883 | 6.065588e-63 | 1.571602e-59 |
| MsG0180005758.01 | MsG0680033952.01 | -0.809322 | 2.003616e-50 | 1.172779e-47 |
| MsG0180005758.01 | MsG0680034431.01 | -0.836072 | 1.159557e-56 | 1.445305e-53 |
| MsG0180005758.01 | MsG0680034980.01 | 0.808675 | 2.756554e-50 | 1.585862e-47 |
| MsG0180005758.01 | MsG0680035612.01 | -0.808244 | 3.405892e-50 | 1.937615e-47 |
| MsG0180005758.01 | MsG0680035897.01 | -0.835562 | 1.561477e-56 | 1.916405e-53 |
| MsG0180005758.01 | MsG0780036583.01 | -0.825461 | 4.628114e-54 | 4.220987e-51 |
| MsG0180005758.01 | MsG0780036925.01 | -0.804672 | 1.930463e-49 | 1.001376e-46 |
| MsG0180005758.01 | MsG0780038106.01 | -0.832982 | 6.926205e-56 | 7.868665e-53 |
| MsG0180005758.01 | MsG0780038108.01 | -0.816808 | 4.569257e-52 | 3.270557e-49 |
| MsG0180005758.01 | MsG0780038115.01 | -0.869417 | 3.144387e-66 | 1.179342e-62 |
| MsG0180005758.01 | MsG0780038337.01 | -0.807734 | 4.373283e-50 | 2.454730e-47 |
| MsG0180005758.01 | MsG0780038786.01 | -0.814030 | 1.896018e-51 | 1.258218e-48 |
| MsG0180005758.01 | MsG0780039634.01 | -0.803575 | 3.265226e-49 | 1.646729e-46 |
| MsG0180005758.01 | MsG0780039704.01 | -0.808368 | 3.205837e-50 | 1.829740e-47 |
| MsG0180005758.01 | MsG0780039873.01 | -0.813456 | 2.536956e-51 | 1.657642e-48 |
| MsG0180005758.01 | MsG0780040073.01 | -0.816860 | 4.448108e-52 | 3.188454e-49 |
| MsG0180005758.01 | MsG0780040587.01 | -0.800114 | 1.677438e-48 | 7.746490e-46 |
| MsG0180005758.01 | MsG0780040849.01 | -0.810212 | 1.289863e-50 | 7.728533e-48 |
| MsG0180005758.01 | MsG0780041249.01 | -0.808762 | 2.641452e-50 | 1.523107e-47 |
| MsG0180005758.01 | MsG0780041814.01 | -0.802462 | 5.547266e-49 | 2.718962e-46 |
| MsG0180005758.01 | MsG0880041995.01 | -0.802276 | 6.057492e-49 | 2.955087e-46 |
| MsG0180005758.01 | MsG0880042006.01 | -0.842129 | 3.122443e-58 | 4.688488e-55 |
| MsG0180005758.01 | MsG0880042043.01 | -0.802345 | 5.863617e-49 | 2.865584e-46 |
| MsG0180005758.01 | MsG0880042895.01 | -0.849403 | 3.306807e-60 | 6.261513e-57 |
| MsG0180005758.01 | MsG0880042921.01 | -0.873912 | 1.017639e-67 | 4.491719e-64 |
| MsG0180005758.01 | MsG0880043515.01 | -0.833142 | 6.319748e-56 | 7.214299e-53 |
| MsG0180005758.01 | MsG0880043913.01 | -0.835748 | 1.400779e-56 | 1.728968e-53 |
| MsG0180005758.01 | MsG0880045150.01 | -0.837879 | 4.006425e-57 | 5.275562e-54 |
| MsG0180005758.01 | MsG0880045151.01 | -0.806788 | 6.939254e-50 | 3.800307e-47 |
| MsG0180005758.01 | MsG0880045261.01 | -0.831760 | 1.390148e-55 | 1.523255e-52 |
| MsG0180005758.01 | MsG0880045412.01 | -0.822202 | 2.687833e-53 | 2.234571e-50 |
| MsG0180005758.01 | MsG0880045755.01 | -0.803141 | 4.017067e-49 | 2.003271e-46 |
| MsG0180005758.01 | MsG0880045772.01 | -0.806230 | 9.099321e-50 | 4.913004e-47 |
| MsG0180005758.01 | MsG0880046024.01 | -0.835604 | 1.523077e-56 | 1.871736e-53 |
| MsG0180005758.01 | MsG0880046025.01 | -0.843333 | 1.494220e-58 | 2.330443e-55 |
| MsG0180005758.01 | MsG0880046135.01 | 0.820757 | 5.795523e-53 | 4.626414e-50 |
| MsG0180005758.01 | MsG0880046227.01 | 0.861340 | 1.098949e-63 | 3.099596e-60 |
| MsG0180005758.01 | MsG0880046288.01 | -0.804192 | 2.430493e-49 | 1.245232e-46 |
| MsG0180005758.01 | MsG0880046347.01 | -0.801702 | 7.947802e-49 | 3.820868e-46 |
| MsG0180005758.01 | MsG0880046584.01 | -0.802478 | 5.504333e-49 | 2.698999e-46 |
| MsG0180005758.01 | MsG0880046639.01 | -0.807560 | 4.762079e-50 | 2.660725e-47 |
| MsG0180005758.01 | MsG0880047161.01 | -0.816959 | 4.225937e-52 | 3.037703e-49 |
| MsG0180005758.01 | MsG0880047251.01 | -0.803614 | 3.204820e-49 | 1.617811e-46 |
| MsG0180005758.01 | MsG0880047605.01 | -0.837381 | 5.374187e-57 | 6.968178e-54 |
| MsG0180005758.01 | MsG0880047669.01 | -0.809486 | 1.847821e-50 | 1.086266e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005758.01.T01 | MTR_1g106095 | 87.500 | 32 | 4 | 0 | 63 | 94 | 66 | 97 | 5.26e-16 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATTTCATGGAATTAAT+AGG | 0.269473 | 1:+95755342 | None:intergenic |
| ACTGACCAATCCTGTGAATT+AGG | 0.284322 | 1:-95757022 | None:intergenic |
| ACAAATGAAATTTCTTATAA+AGG | 0.286353 | 1:-95757071 | None:intergenic |
| TATCCGGCGCCGGAGACTTA+TGG | 0.337883 | 1:+95755366 | MsG0180005758.01.T01:CDS |
| CATGGAATTAATAGGTTATC+CGG | 0.342137 | 1:+95755350 | None:intergenic |
| AGACATTACTTTGCACAGAT+TGG | 0.375088 | 1:+95756873 | MsG0180005758.01.T01:CDS |
| CCACCTCGTCAGCAAAATTC+AGG | 0.380629 | 1:+95755516 | MsG0180005758.01.T01:CDS |
| ACAAGGTTACCCTCCACAAC+AGG | 0.383576 | 1:+95755422 | MsG0180005758.01.T01:CDS |
| TCTCTGCTGTTGCTGTCTCT+TGG | 0.422721 | 1:+95756834 | MsG0180005758.01.T01:CDS |
| TTTCGTACTGCCTAATTCAC+AGG | 0.460541 | 1:+95757012 | MsG0180005758.01.T01:three_prime_UTR |
| TTTCCATAAGTCTCCGGCGC+CGG | 0.467483 | 1:-95755369 | None:intergenic |
| TACTGCCTAATTCACAGGAT+TGG | 0.486618 | 1:+95757017 | MsG0180005758.01.T01:three_prime_UTR |
| TAACCTTGTGGAGGATATCC+TGG | 0.496681 | 1:-95755408 | None:intergenic |
| GAATTAGGCAGTACGAAAGT+TGG | 0.503589 | 1:-95757007 | None:intergenic |
| AAGGTAACAAGCATCGCAAA+AGG | 0.524557 | 1:-95757052 | None:intergenic |
| TGCGGTGGGTAGCCTTGTTG+TGG | 0.552033 | 1:-95755468 | None:intergenic |
| TGTGGAGGATATCCTGGTGG+AGG | 0.557895 | 1:-95755402 | None:intergenic |
| TGAGGTGGATAGCCCTGTTG+TGG | 0.565061 | 1:-95755435 | None:intergenic |
| ATTAATAGGTTATCCGGCGC+CGG | 0.592144 | 1:+95755356 | MsG0180005758.01.T01:CDS |
| GGTGGATAGCCCTGTTGTGG+AGG | 0.592582 | 1:-95755432 | None:intergenic |
| TACTGAGGAGCATATTGCGG+TGG | 0.605867 | 1:-95755483 | None:intergenic |
| GTGGAGGATATCCTGGTGGA+GGG | 0.625281 | 1:-95755401 | None:intergenic |
| CAAGGCTATCCTCCACAACA+AGG | 0.626755 | 1:+95755456 | MsG0180005758.01.T01:CDS |
| GGTGGGTAGCCTTGTTGTGG+AGG | 0.627143 | 1:-95755465 | None:intergenic |
| AAAGATGCTTACCCTCCACC+AGG | 0.636903 | 1:+95755390 | MsG0180005758.01.T01:CDS |
| CAACAGGGCTATCCACCTCA+AGG | 0.638659 | 1:+95755438 | MsG0180005758.01.T01:CDS |
| GGTGGTGGCTGAGCGTACTG+AGG | 0.643562 | 1:-95755498 | None:intergenic |
| ACTGAGGAGCATATTGCGGT+GGG | 0.646934 | 1:-95755482 | None:intergenic |
| TGTTGTGGAGGGTAACCTTG+TGG | 0.649835 | 1:-95755420 | None:intergenic |
| GTGGATAGCCCTGTTGTGGA+GGG | 0.654497 | 1:-95755431 | None:intergenic |
| CAAGGTTACCCTCCACAACA+GGG | 0.654753 | 1:+95755423 | MsG0180005758.01.T01:CDS |
| CCACCAGGATATCCTCCACA+AGG | 0.654889 | 1:+95755405 | MsG0180005758.01.T01:CDS |
| TGTTGTGGAGGATAGCCTTG+AGG | 0.658505 | 1:-95755453 | None:intergenic |
| TGTGGAGGATAGCCTTGAGG+TGG | 0.659468 | 1:-95755450 | None:intergenic |
| GCGTACTGAGGAGCATATTG+CGG | 0.667195 | 1:-95755486 | None:intergenic |
| CCTCGTCAGCAAAATTCAGG+CGG | 0.710460 | 1:+95755519 | MsG0180005758.01.T01:CDS |
| CCTTGTGGAGGATATCCTGG+TGG | 0.714352 | 1:-95755405 | None:intergenic |
| TGTGGAGGGTAACCTTGTGG+AGG | 0.722140 | 1:-95755417 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGAAATTAAAATTGAA+TGG | + | Chr1:95755637-95755656 | MsG0180005758.01.T01:intron | 10.0% |
| !!! | TTTAATTTCAATTTTAACTT+GGG | - | Chr1:95755631-95755650 | None:intergenic | 10.0% |
| !!! | TTTTAATTTCAATTTTAACT+TGG | - | Chr1:95755632-95755651 | None:intergenic | 10.0% |
| !! | AAAAGAATAAGAAACTAATA+AGG | - | Chr1:95756680-95756699 | None:intergenic | 15.0% |
| !! | AACAAGCTATTAAAAATTAA+AGG | + | Chr1:95755917-95755936 | MsG0180005758.01.T01:intron | 15.0% |
| !! | ACAAATGAAATTTCTTATAA+AGG | - | Chr1:95757074-95757093 | None:intergenic | 15.0% |
| !!! | TTATTAGTTTCTTATTCTTT+TGG | + | Chr1:95756679-95756698 | MsG0180005758.01.T01:intron | 15.0% |
| !!! | TTTTCTTTCTTTATTTTTGT+GGG | + | Chr1:95755817-95755836 | MsG0180005758.01.T01:intron | 15.0% |
| !!! | TTTTTCTTTCTTTATTTTTG+TGG | + | Chr1:95755816-95755835 | MsG0180005758.01.T01:intron | 15.0% |
| !! | AATTTGCAAACAGAAAATTA+AGG | - | Chr1:95755601-95755620 | None:intergenic | 20.0% |
| !! | ACAATACTAGTATACTAAAA+AGG | + | Chr1:95756335-95756354 | MsG0180005758.01.T01:intron | 20.0% |
| !! | TCAAAAACCTTATTAATTTC+TGG | + | Chr1:95756728-95756747 | MsG0180005758.01.T01:intron | 20.0% |
| !! | TTGACAAACAGAAATTAATA+AGG | - | Chr1:95756712-95756731 | None:intergenic | 20.0% |
| !!! | AATAGCTTGTTTGTTAATTT+AGG | - | Chr1:95755908-95755927 | None:intergenic | 20.0% |
| ! | AAAGAACAAAGATAAACGTA+TGG | - | Chr1:95756541-95756560 | None:intergenic | 25.0% |
| ! | AAATGAAATGAACGTGATTA+AGG | + | Chr1:95755666-95755685 | MsG0180005758.01.T01:intron | 25.0% |
| ! | CAGAAAACCAGAAATTAATA+AGG | - | Chr1:95756738-95756757 | None:intergenic | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | + | Chr1:95756117-95756136 | MsG0180005758.01.T01:intron | 25.0% |
| ! | CTGCAACATTTACAAATTAT+AGG | - | Chr1:95756805-95756824 | None:intergenic | 25.0% |
| ! | TTTGAACTTAAAATATCCTC+CGG | + | Chr1:95756060-95756079 | MsG0180005758.01.T01:intron | 25.0% |
| !! | TTGATATTTCTAAACTCTTG+TGG | - | Chr1:95756445-95756464 | None:intergenic | 25.0% |
| !! | TTGCATTAATATGCATTTTG+AGG | - | Chr1:95756570-95756589 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | - | Chr1:95756082-95756101 | None:intergenic | 25.0% |
| !!! | AGTAGGTTGGTTTTAATTTT+AGG | - | Chr1:95755958-95755977 | None:intergenic | 25.0% |
| AATAGTATGTCCGATGATAT+GGG | - | Chr1:95755844-95755863 | None:intergenic | 30.0% | |
| AATGCAAATGCAACAATTCT+TGG | + | Chr1:95756583-95756602 | MsG0180005758.01.T01:intron | 30.0% | |
| AATTTGTAAATGTTGCAGCT+TGG | + | Chr1:95756807-95756826 | MsG0180005758.01.T01:intron | 30.0% | |
| ATAACGTGACGAAAGATAAT+AGG | - | Chr1:95755776-95755795 | None:intergenic | 30.0% | |
| CTAGTATACTAAAAAGGTGA+AGG | + | Chr1:95756341-95756360 | MsG0180005758.01.T01:intron | 30.0% | |
| GTGTTTGTATAACTGGAAAT+AGG | - | Chr1:95756647-95756666 | None:intergenic | 30.0% | |
| TAATAGTATGTCCGATGATA+TGG | - | Chr1:95755845-95755864 | None:intergenic | 30.0% | |
| TATAGTTGTTGAGTACTAGT+AGG | - | Chr1:95755975-95755994 | None:intergenic | 30.0% | |
| TATTTGCTTGTATTAGTGAC+CGG | + | Chr1:95756191-95756210 | MsG0180005758.01.T01:intron | 30.0% | |
| TTTGTATAACTGGAAATAGG+TGG | - | Chr1:95756644-95756663 | None:intergenic | 30.0% | |
| ! | CGTTTATCTTTGTTCTTTTG+TGG | + | Chr1:95756543-95756562 | MsG0180005758.01.T01:intron | 30.0% |
| ! | GACAATATACCATTTCTAGA+TGG | - | Chr1:95756290-95756309 | None:intergenic | 30.0% |
| ! | TGGTATATTGTCTTGTTCAA+CGG | + | Chr1:95756298-95756317 | MsG0180005758.01.T01:intron | 30.0% |
| AGACATTACTTTGCACAGAT+TGG | + | Chr1:95756873-95756892 | MsG0180005758.01.T01:CDS | 35.0% | |
| AGTGTATAAGTCAAGTGGAA+GGG | + | Chr1:95756214-95756233 | MsG0180005758.01.T01:intron | 35.0% | |
| CAGATCAGATTACATCACAT+TGG | - | Chr1:95756780-95756799 | None:intergenic | 35.0% | |
| TAAGGAACAATCCAGAAAGA+TGG | - | Chr1:95755583-95755602 | None:intergenic | 35.0% | |
| TACGTGTGTGTTTGTATAAC+TGG | - | Chr1:95756654-95756673 | None:intergenic | 35.0% | |
| TGAAATGAACGTGATTAAGG+AGG | + | Chr1:95755669-95755688 | MsG0180005758.01.T01:intron | 35.0% | |
| AATGATGTCAATGACGTGCA+GGG | + | Chr1:95756259-95756278 | MsG0180005758.01.T01:intron | 40.0% | |
| ACTGACCAATCCTGTGAATT+AGG | - | Chr1:95757025-95757044 | None:intergenic | 40.0% | |
| AGGGTTTAGCCATCTAGAAA+TGG | + | Chr1:95756278-95756297 | MsG0180005758.01.T01:intron | 40.0% | |
| GAATTAGGCAGTACGAAAGT+TGG | - | Chr1:95757010-95757029 | None:intergenic | 40.0% | |
| GAGTGTATAAGTCAAGTGGA+AGG | + | Chr1:95756213-95756232 | MsG0180005758.01.T01:intron | 40.0% | |
| GGAGATTCATTCAGATCAAG+CGG | + | Chr1:95755690-95755709 | MsG0180005758.01.T01:intron | 40.0% | |
| GTGTATAAGTCAAGTGGAAG+GGG | + | Chr1:95756215-95756234 | MsG0180005758.01.T01:intron | 40.0% | |
| GTTGTTGAGTACTAGTAGGT+TGG | - | Chr1:95755971-95755990 | None:intergenic | 40.0% | |
| TAATGATGTCAATGACGTGC+AGG | + | Chr1:95756258-95756277 | MsG0180005758.01.T01:intron | 40.0% | |
| TACTGCCTAATTCACAGGAT+TGG | + | Chr1:95757017-95757036 | MsG0180005758.01.T01:three_prime_UTR | 40.0% | |
| TCCACTTGACTTATACACTC+CGG | - | Chr1:95756213-95756232 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | - | Chr1:95756079-95756098 | None:intergenic | 40.0% | |
| TTTCGTACTGCCTAATTCAC+AGG | + | Chr1:95757012-95757031 | MsG0180005758.01.T01:three_prime_UTR | 40.0% | |
| ! | AAGGTAACAAGCATCGCAAA+AGG | - | Chr1:95757055-95757074 | None:intergenic | 40.0% |
| ! | GCATCTTTTCCATAAGTCTC+CGG | - | Chr1:95755378-95755397 | None:intergenic | 40.0% |
| ! | TAAAAAGGTGAAGGCGTATG+TGG | + | Chr1:95756350-95756369 | MsG0180005758.01.T01:intron | 40.0% |
| ! | TTTTGTGGGACCCATATCAT+CGG | + | Chr1:95755831-95755850 | MsG0180005758.01.T01:intron | 40.0% |
| ACCGGAGTGTATAAGTCAAG+TGG | + | Chr1:95756209-95756228 | MsG0180005758.01.T01:intron | 45.0% | |
| ATAAGTCAAGTGGAAGGGGT+GGG | + | Chr1:95756219-95756238 | MsG0180005758.01.T01:intron | 45.0% | |
| ATCTTGGAATTGATCGCTGG+TGG | + | Chr1:95755717-95755736 | MsG0180005758.01.T01:intron | 45.0% | |
| ATTAATAGGTTATCCGGCGC+CGG | + | Chr1:95755356-95755375 | MsG0180005758.01.T01:CDS | 45.0% | |
| CAATCCAGAAAGATGGAGAG+AGG | - | Chr1:95755576-95755595 | None:intergenic | 45.0% | |
| TAACCTTGTGGAGGATATCC+TGG | - | Chr1:95755411-95755430 | None:intergenic | 45.0% | |
| TACTCCTCTCTCCATCTTTC+TGG | + | Chr1:95755569-95755588 | MsG0180005758.01.T01:intron | 45.0% | |
| TATAAGTCAAGTGGAAGGGG+TGG | + | Chr1:95756218-95756237 | MsG0180005758.01.T01:intron | 45.0% | |
| !! | TCTAATAATAAAATTAAAAA+AGG | - | Chr1:95756397-95756416 | None:intergenic | 5.0% |
| AAAGATGCTTACCCTCCACC+AGG | + | Chr1:95755390-95755409 | MsG0180005758.01.T01:CDS | 50.0% | |
| ACAAGGTTACCCTCCACAAC+AGG | + | Chr1:95755422-95755441 | MsG0180005758.01.T01:CDS | 50.0% | |
| CAAGGCTATCCTCCACAACA+AGG | + | Chr1:95755456-95755475 | MsG0180005758.01.T01:CDS | 50.0% | |
| CAAGGTTACCCTCCACAACA+GGG | + | Chr1:95755423-95755442 | MsG0180005758.01.T01:CDS | 50.0% | |
| CCACCTCGTCAGCAAAATTC+AGG | + | Chr1:95755516-95755535 | MsG0180005758.01.T01:CDS | 50.0% | |
| CCTCGTCAGCAAAATTCAGG+CGG | + | Chr1:95755519-95755538 | MsG0180005758.01.T01:CDS | 50.0% | |
| GCGATCTTGGAATTGATCGC+TGG | + | Chr1:95755714-95755733 | MsG0180005758.01.T01:intron | 50.0% | |
| TCTCTGCTGTTGCTGTCTCT+TGG | + | Chr1:95756834-95756853 | MsG0180005758.01.T01:CDS | 50.0% | |
| TGTTGTGGAGGGTAACCTTG+TGG | - | Chr1:95755423-95755442 | None:intergenic | 50.0% | |
| ! | ACTGAGGAGCATATTGCGGT+GGG | - | Chr1:95755485-95755504 | None:intergenic | 50.0% |
| ! | CCTGAATTTTGCTGACGAGG+TGG | - | Chr1:95755519-95755538 | None:intergenic | 50.0% |
| ! | CTCTTGGATGCGTGCTTTTG+AGG | + | Chr1:95756850-95756869 | MsG0180005758.01.T01:CDS | 50.0% |
| ! | GAATTTTGCTGACGAGGTGG+TGG | - | Chr1:95755516-95755535 | None:intergenic | 50.0% |
| ! | GCGTACTGAGGAGCATATTG+CGG | - | Chr1:95755489-95755508 | None:intergenic | 50.0% |
| ! | TACTGAGGAGCATATTGCGG+TGG | - | Chr1:95755486-95755505 | None:intergenic | 50.0% |
| ! | TGTTGTGGAGGATAGCCTTG+AGG | - | Chr1:95755456-95755475 | None:intergenic | 50.0% |
| CAACAGGGCTATCCACCTCA+AGG | + | Chr1:95755438-95755457 | MsG0180005758.01.T01:CDS | 55.0% | |
| CAGATCAAGCGGTGCGATCT+TGG | + | Chr1:95755701-95755720 | MsG0180005758.01.T01:intron | 55.0% | |
| CAGCAAAATTCAGGCGGTGC+TGG | + | Chr1:95755525-95755544 | MsG0180005758.01.T01:intron | 55.0% | |
| CCACCAGGATATCCTCCACA+AGG | + | Chr1:95755405-95755424 | MsG0180005758.01.T01:CDS | 55.0% | |
| CCTTGTGGAGGATATCCTGG+TGG | - | Chr1:95755408-95755427 | None:intergenic | 55.0% | |
| GTGGAGGATATCCTGGTGGA+GGG | - | Chr1:95755404-95755423 | None:intergenic | 55.0% | |
| GTGGATAGCCCTGTTGTGGA+GGG | - | Chr1:95755434-95755453 | None:intergenic | 55.0% | |
| TGAGGTGGATAGCCCTGTTG+TGG | - | Chr1:95755438-95755457 | None:intergenic | 55.0% | |
| TGTGGAGGATATCCTGGTGG+AGG | - | Chr1:95755405-95755424 | None:intergenic | 55.0% | |
| TGTGGAGGGTAACCTTGTGG+AGG | - | Chr1:95755420-95755439 | None:intergenic | 55.0% | |
| TTTCCATAAGTCTCCGGCGC+CGG | - | Chr1:95755372-95755391 | None:intergenic | 55.0% | |
| ! | CCGCCTGAATTTTGCTGACG+AGG | - | Chr1:95755522-95755541 | None:intergenic | 55.0% |
| ! | TGTGGAGGATAGCCTTGAGG+TGG | - | Chr1:95755453-95755472 | None:intergenic | 55.0% |
| GGTGGATAGCCCTGTTGTGG+AGG | - | Chr1:95755435-95755454 | None:intergenic | 60.0% | |
| ! | TATCCGGCGCCGGAGACTTA+TGG | + | Chr1:95755366-95755385 | MsG0180005758.01.T01:CDS | 60.0% |
| !! | GGTGGGTAGCCTTGTTGTGG+AGG | - | Chr1:95755468-95755487 | None:intergenic | 60.0% |
| !! | GTGCTGGTTGCATGGAAGGC+TGG | + | Chr1:95755541-95755560 | MsG0180005758.01.T01:intron | 60.0% |
| !! | TGCGGTGGGTAGCCTTGTTG+TGG | - | Chr1:95755471-95755490 | None:intergenic | 60.0% |
| !! | TTCAGGCGGTGCTGGTTGCA+TGG | + | Chr1:95755533-95755552 | MsG0180005758.01.T01:intron | 60.0% |
| ! | GGTGGTGGCTGAGCGTACTG+AGG | - | Chr1:95755501-95755520 | None:intergenic | 65.0% |
| !! | GGCGGTGCTGGTTGCATGGA+AGG | + | Chr1:95755537-95755556 | MsG0180005758.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 95755351 | 95757123 | 95755351 | ID=MsG0180005758.01;Name=MsG0180005758.01 |
| Chr1 | mRNA | 95755351 | 95757123 | 95755351 | ID=MsG0180005758.01.T01;Parent=MsG0180005758.01;Name=MsG0180005758.01.T01;_AED=0.41;_eAED=0.42;_QI=0|0|0.5|1|0|0|2|192|98 |
| Chr1 | exon | 95755351 | 95755540 | 95755351 | ID=MsG0180005758.01.T01:exon:19394;Parent=MsG0180005758.01.T01 |
| Chr1 | exon | 95756825 | 95757123 | 95756825 | ID=MsG0180005758.01.T01:exon:19395;Parent=MsG0180005758.01.T01 |
| Chr1 | CDS | 95755351 | 95755540 | 95755351 | ID=MsG0180005758.01.T01:cds;Parent=MsG0180005758.01.T01 |
| Chr1 | CDS | 95756825 | 95756931 | 95756825 | ID=MsG0180005758.01.T01:cds;Parent=MsG0180005758.01.T01 |
| Chr1 | three_prime_UTR | 95756932 | 95757123 | 95756932 | ID=MsG0180005758.01.T01:three_prime_utr;Parent=MsG0180005758.01.T01 |
| Gene Sequence |
| Protein sequence |
