Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780038798.01.T01 | XP_024626694.2 | 68.504 | 381 | 69 | 4 | 3 | 332 | 2 | 382 | 2.83E-167 | 484 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780038798.01.T01 | A0A072TZK3 | 63.768 | 414 | 66 | 5 | 3 | 332 | 2 | 415 | 9.51e-163 | 473 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0280006299.01 | MsG0780038798.01 | 0.809576 | 1.767335e-50 | 1.041517e-47 |
MsG0280010698.01 | MsG0780038798.01 | 0.808459 | 3.065964e-50 | 1.754063e-47 |
MsG0680032933.01 | MsG0780038798.01 | 0.814681 | 1.361157e-51 | 9.193364e-49 |
MsG0680035573.01 | MsG0780038798.01 | 0.805190 | 1.504658e-49 | 7.909777e-47 |
MsG0480019297.01 | MsG0780038798.01 | 0.836440 | 9.345728e-57 | 1.177864e-53 |
MsG0480020465.01 | MsG0780038798.01 | 0.823737 | 1.179135e-53 | 1.024033e-50 |
MsG0480023130.01 | MsG0780038798.01 | 0.805222 | 1.481301e-49 | 7.793374e-47 |
MsG0580024038.01 | MsG0780038798.01 | 0.805630 | 1.216846e-49 | 6.469601e-47 |
MsG0580025758.01 | MsG0780038798.01 | 0.804253 | 2.360727e-49 | 1.211373e-46 |
MsG0580027745.01 | MsG0780038798.01 | 0.814824 | 1.265635e-51 | 8.581026e-49 |
MsG0780037146.01 | MsG0780038798.01 | 0.800482 | 1.412092e-48 | 6.582211e-46 |
MsG0780038401.01 | MsG0780038798.01 | 0.809498 | 1.836746e-50 | 1.080123e-47 |
MsG0780038602.01 | MsG0780038798.01 | 0.810830 | 9.485518e-51 | 5.777940e-48 |
MsG0780038798.01 | MsG0780039866.01 | 0.828325 | 9.575079e-55 | 9.485370e-52 |
MsG0780038798.01 | MsG0880045372.01 | 0.805803 | 1.118824e-49 | 5.975128e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780038798.01.T01 | MTR_7g062280 | 63.768 | 414 | 66 | 5 | 3 | 332 | 2 | 415 | 2.41e-166 | 473 |
MsG0780038798.01.T01 | MTR_7g062300 | 63.300 | 406 | 71 | 5 | 1 | 332 | 1 | 402 | 3.63e-161 | 459 |
MsG0780038798.01.T01 | MTR_7g063920 | 60.647 | 371 | 96 | 6 | 1 | 332 | 1 | 360 | 2.74e-138 | 400 |
MsG0780038798.01.T01 | MTR_7g063900 | 46.190 | 420 | 145 | 6 | 3 | 342 | 2 | 420 | 7.95e-106 | 319 |
MsG0780038798.01.T01 | MTR_7g063830 | 46.316 | 380 | 133 | 5 | 3 | 313 | 2 | 379 | 8.10e-100 | 302 |
MsG0780038798.01.T01 | MTR_7g063830 | 26.702 | 191 | 129 | 5 | 8 | 196 | 251 | 432 | 5.44e-11 | 63.9 |
MsG0780038798.01.T01 | MTR_7g063820 | 46.214 | 383 | 129 | 7 | 3 | 313 | 2 | 379 | 2.15e-94 | 289 |
MsG0780038798.01.T01 | MTR_7g063840 | 45.946 | 370 | 134 | 6 | 9 | 314 | 8 | 375 | 1.93e-93 | 286 |
MsG0780038798.01.T01 | MTR_7g063880 | 46.494 | 385 | 122 | 8 | 1 | 315 | 1 | 371 | 3.28e-91 | 281 |
MsG0780038798.01.T01 | MTR_7g063660 | 46.518 | 359 | 124 | 5 | 10 | 302 | 8 | 364 | 1.60e-85 | 266 |
MsG0780038798.01.T01 | MTR_3g007740 | 42.932 | 382 | 111 | 8 | 7 | 314 | 5 | 353 | 1.25e-81 | 255 |
MsG0780038798.01.T01 | MTR_3g007740 | 26.238 | 202 | 128 | 6 | 9 | 196 | 242 | 436 | 3.27e-11 | 64.7 |
MsG0780038798.01.T01 | MTR_7g063890 | 44.557 | 395 | 126 | 6 | 8 | 335 | 24 | 392 | 1.75e-81 | 256 |
MsG0780038798.01.T01 | MTR_7g063670 | 44.681 | 329 | 97 | 5 | 9 | 264 | 13 | 329 | 2.91e-72 | 231 |
MsG0780038798.01.T01 | MTR_7g063670 | 28.079 | 203 | 124 | 6 | 9 | 196 | 250 | 445 | 1.72e-12 | 68.6 |
MsG0780038798.01.T01 | MTR_3g065200 | 38.781 | 361 | 134 | 8 | 11 | 318 | 3 | 329 | 3.91e-65 | 213 |
MsG0780038798.01.T01 | MTR_7g062270 | 55.376 | 186 | 50 | 3 | 1 | 154 | 1 | 185 | 5.13e-58 | 192 |
MsG0780038798.01.T01 | MTR_7g066430 | 36.158 | 354 | 133 | 7 | 12 | 280 | 5 | 350 | 1.17e-52 | 181 |
MsG0780038798.01.T01 | MTR_7g066570 | 34.943 | 352 | 145 | 7 | 4 | 280 | 8 | 350 | 7.40e-52 | 181 |
MsG0780038798.01.T01 | MTR_7g066480 | 37.931 | 319 | 123 | 6 | 11 | 256 | 16 | 332 | 1.78e-51 | 176 |
MsG0780038798.01.T01 | MTR_7g066260 | 36.111 | 360 | 147 | 8 | 1 | 280 | 6 | 362 | 2.90e-50 | 175 |
MsG0780038798.01.T01 | MTR_7g066260 | 30.653 | 199 | 108 | 9 | 14 | 196 | 272 | 456 | 5.72e-14 | 73.2 |
MsG0780038798.01.T01 | MTR_7g066340 | 33.333 | 366 | 150 | 11 | 3 | 285 | 5 | 359 | 7.66e-49 | 171 |
MsG0780038798.01.T01 | MTR_7g066340 | 30.457 | 197 | 121 | 7 | 7 | 196 | 260 | 447 | 3.02e-16 | 79.7 |
MsG0780038798.01.T01 | MTR_7g012680 | 35.475 | 358 | 131 | 9 | 1 | 280 | 1 | 336 | 3.40e-48 | 168 |
MsG0780038798.01.T01 | MTR_7g012680 | 29.245 | 212 | 109 | 7 | 9 | 194 | 241 | 437 | 8.72e-12 | 66.2 |
MsG0780038798.01.T01 | MTR_7g066490 | 37.143 | 315 | 117 | 7 | 11 | 256 | 16 | 318 | 3.29e-46 | 162 |
MsG0780038798.01.T01 | MTR_7g066580 | 36.335 | 322 | 141 | 8 | 23 | 290 | 7 | 318 | 5.81e-46 | 162 |
MsG0780038798.01.T01 | MTR_7g066410 | 33.333 | 378 | 153 | 8 | 1 | 280 | 1 | 377 | 2.54e-45 | 162 |
MsG0780038798.01.T01 | MTR_7g063690 | 42.259 | 239 | 105 | 6 | 1 | 236 | 1 | 209 | 3.28e-45 | 155 |
MsG0780038798.01.T01 | MTR_7g066350 | 34.463 | 354 | 153 | 7 | 3 | 279 | 2 | 353 | 9.58e-45 | 159 |
MsG0780038798.01.T01 | MTR_7g058710 | 31.414 | 382 | 167 | 9 | 2 | 302 | 3 | 370 | 2.12e-44 | 159 |
MsG0780038798.01.T01 | MTR_2g029400 | 36.301 | 292 | 144 | 5 | 10 | 279 | 13 | 284 | 3.29e-44 | 157 |
MsG0780038798.01.T01 | MTR_1g041315 | 32.216 | 388 | 165 | 12 | 1 | 294 | 1 | 384 | 9.01e-44 | 157 |
MsG0780038798.01.T01 | MTR_1g041315 | 30.921 | 152 | 87 | 4 | 4 | 146 | 271 | 413 | 8.30e-17 | 81.6 |
MsG0780038798.01.T01 | MTR_7g066360 | 34.530 | 362 | 143 | 9 | 1 | 280 | 1 | 350 | 3.80e-40 | 147 |
MsG0780038798.01.T01 | MTR_7g066290 | 33.426 | 359 | 157 | 8 | 1 | 280 | 5 | 360 | 6.41e-39 | 143 |
MsG0780038798.01.T01 | MTR_1g014060 | 32.588 | 313 | 149 | 5 | 19 | 298 | 8 | 291 | 2.19e-38 | 141 |
MsG0780038798.01.T01 | MTR_7g066310 | 35.135 | 296 | 161 | 7 | 5 | 280 | 2 | 286 | 2.56e-35 | 133 |
MsG0780038798.01.T01 | MTR_7g066310 | 30.303 | 198 | 120 | 8 | 7 | 196 | 190 | 377 | 6.61e-15 | 75.5 |
MsG0780038798.01.T01 | MTR_7g066400 | 31.063 | 367 | 147 | 12 | 11 | 304 | 12 | 345 | 2.89e-34 | 131 |
MsG0780038798.01.T01 | MTR_7g066400 | 26.923 | 208 | 121 | 7 | 7 | 196 | 237 | 431 | 2.25e-12 | 68.2 |
MsG0780038798.01.T01 | MTR_4g019310 | 35.336 | 283 | 134 | 6 | 14 | 248 | 11 | 292 | 1.77e-31 | 124 |
MsG0780038798.01.T01 | MTR_7g058700 | 29.377 | 337 | 121 | 9 | 23 | 272 | 531 | 837 | 4.76e-28 | 115 |
MsG0780038798.01.T01 | MTR_7g058700 | 26.702 | 191 | 108 | 8 | 11 | 196 | 752 | 915 | 4.71e-11 | 64.7 |
MsG0780038798.01.T01 | MTR_7g063870 | 36.066 | 183 | 66 | 3 | 5 | 186 | 25 | 157 | 3.59e-27 | 107 |
MsG0780038798.01.T01 | MTR_4g017470 | 28.125 | 352 | 178 | 13 | 1 | 291 | 1 | 338 | 1.47e-25 | 107 |
MsG0780038798.01.T01 | MTR_4g017410 | 30.435 | 253 | 127 | 9 | 5 | 209 | 3 | 254 | 1.44e-22 | 98.6 |
MsG0780038798.01.T01 | MTR_4g017440 | 27.642 | 369 | 172 | 14 | 12 | 291 | 15 | 377 | 1.31e-21 | 95.9 |
MsG0780038798.01.T01 | MTR_4g019340 | 26.933 | 375 | 178 | 11 | 8 | 290 | 35 | 405 | 2.47e-21 | 95.1 |
MsG0780038798.01.T01 | MTR_4g017830 | 28.620 | 297 | 159 | 11 | 1 | 248 | 1 | 293 | 6.55e-21 | 94.0 |
MsG0780038798.01.T01 | MTR_1g115440 | 26.749 | 243 | 129 | 4 | 1 | 200 | 1 | 237 | 9.09e-20 | 87.4 |
MsG0780038798.01.T01 | MTR_8g445860 | 28.750 | 240 | 121 | 7 | 1 | 200 | 7 | 236 | 2.78e-19 | 85.9 |
MsG0780038798.01.T01 | MTR_0150s0010 | 27.984 | 243 | 125 | 5 | 1 | 200 | 1 | 236 | 7.03e-19 | 84.7 |
MsG0780038798.01.T01 | MTR_4g017610 | 31.020 | 245 | 122 | 10 | 1 | 200 | 1 | 243 | 2.06e-18 | 86.3 |
MsG0780038798.01.T01 | MTR_2g067310 | 37.349 | 166 | 89 | 6 | 3 | 162 | 34 | 190 | 1.81e-17 | 80.9 |
MsG0780038798.01.T01 | MTR_7g063720 | 39.683 | 126 | 39 | 3 | 201 | 290 | 1 | 125 | 1.27e-16 | 78.6 |
MsG0780038798.01.T01 | MTR_7g063720 | 31.455 | 213 | 100 | 8 | 13 | 196 | 25 | 220 | 1.69e-16 | 78.2 |
MsG0780038798.01.T01 | MTR_7g100420 | 29.114 | 316 | 167 | 14 | 3 | 314 | 33 | 295 | 5.54e-16 | 79.0 |
MsG0780038798.01.T01 | MTR_8g023240 | 29.439 | 214 | 130 | 7 | 9 | 203 | 35 | 246 | 3.48e-15 | 77.0 |
MsG0780038798.01.T01 | MTR_1g115455 | 28.033 | 239 | 125 | 10 | 1 | 200 | 1 | 231 | 1.53e-12 | 66.6 |
MsG0780038798.01.T01 | MTR_1g115450 | 39.362 | 94 | 48 | 2 | 1 | 94 | 1 | 85 | 5.19e-12 | 63.2 |
MsG0780038798.01.T01 | MTR_1g115470 | 37.143 | 105 | 58 | 3 | 13 | 115 | 8 | 106 | 4.77e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780038798.01.T01 | AT3G09110 | 34.307 | 274 | 141 | 5 | 13 | 248 | 11 | 283 | 5.54e-39 | 141 |
MsG0780038798.01.T01 | AT3G09120 | 37.391 | 230 | 102 | 4 | 10 | 199 | 5 | 232 | 3.52e-32 | 122 |
MsG0780038798.01.T01 | AT5G01120 | 35.714 | 238 | 112 | 5 | 12 | 209 | 10 | 246 | 1.13e-31 | 124 |
MsG0780038798.01.T01 | AT5G01150 | 31.786 | 280 | 146 | 4 | 13 | 248 | 11 | 289 | 4.55e-31 | 123 |
MsG0780038798.01.T01 | AT3G09140 | 30.769 | 312 | 144 | 7 | 1 | 248 | 1 | 304 | 4.01e-29 | 117 |
MsG0780038798.01.T01 | AT3G09140 | 24.215 | 223 | 131 | 6 | 10 | 201 | 277 | 492 | 2.61e-11 | 65.1 |
MsG0780038798.01.T01 | AT5G01130 | 31.502 | 273 | 147 | 7 | 12 | 248 | 10 | 278 | 1.06e-27 | 113 |
MsG0780038798.01.T01 | AT5G43240 | 31.408 | 277 | 139 | 4 | 12 | 238 | 10 | 285 | 1.65e-27 | 113 |
MsG0780038798.01.T01 | AT5G43240 | 31.408 | 277 | 139 | 4 | 12 | 238 | 10 | 285 | 1.65e-27 | 113 |
MsG0780038798.01.T01 | AT5G43240 | 31.408 | 277 | 139 | 4 | 12 | 238 | 10 | 285 | 1.65e-27 | 113 |
MsG0780038798.01.T01 | AT3G09140 | 47.458 | 118 | 60 | 1 | 1 | 118 | 1 | 116 | 1.92e-25 | 107 |
MsG0780038798.01.T01 | AT3G09140 | 24.215 | 223 | 131 | 6 | 10 | 201 | 305 | 520 | 2.31e-11 | 65.1 |
MsG0780038798.01.T01 | AT5G37320 | 44.444 | 108 | 59 | 1 | 12 | 118 | 10 | 117 | 4.16e-21 | 94.4 |
MsG0780038798.01.T01 | AT5G01140 | 29.758 | 289 | 139 | 9 | 1 | 248 | 1 | 266 | 4.72e-21 | 94.4 |
Find 68 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTAGTCTGTTCCAGGATTT+TGG | 0.174814 | 7:+53237079 | MsG0780038798.01.T01:CDS |
ATCCTTGGGGAAGAGGTTTA+AGG | 0.211704 | 7:-53236982 | None:intergenic |
TGTTCCTTGGGCAGCATTAA+TGG | 0.216147 | 7:+53237507 | MsG0780038798.01.T01:intron |
CTTCCCCAAGGATTTGTTAA+TGG | 0.224128 | 7:+53236992 | MsG0780038798.01.T01:CDS |
TAACTAGCTTTAGATTGATT+TGG | 0.246947 | 7:-53237372 | None:intergenic |
CCCCGTGTTGAAGAATATTA+TGG | 0.277621 | 7:+53237660 | MsG0780038798.01.T01:CDS |
CTTCAGTTGATGTGAAATAT+TGG | 0.300242 | 7:-53237563 | None:intergenic |
GTACAAGAGCATAGTTGATT+TGG | 0.308317 | 7:+53237533 | MsG0780038798.01.T01:CDS |
CATCTTCAAATTCTCAAATC+TGG | 0.310312 | 7:+53237720 | MsG0780038798.01.T01:CDS |
TAATCTTCCATTGGGTTGAT+TGG | 0.322996 | 7:-53236005 | None:intergenic |
TTATCTAATGTGATTATTCC+TGG | 0.323308 | 7:+53237771 | MsG0780038798.01.T01:CDS |
TACAAGATTTAGTCTGTTCC+AGG | 0.337305 | 7:+53237072 | MsG0780038798.01.T01:CDS |
CTTGTATAGTCAATACAGTT+TGG | 0.367447 | 7:-53237055 | None:intergenic |
TTCGTTTAAAAGAAGTTTCA+AGG | 0.368322 | 7:-53235763 | None:intergenic |
AGCTTCCTCACAATGCCTTT+AGG | 0.369220 | 7:+53235843 | MsG0780038798.01.T01:CDS |
AACAAAGTCCTTCCCGGCTT+CGG | 0.374291 | 7:-53235808 | None:intergenic |
TTTAGACAACCAACTGTAAC+TGG | 0.382333 | 7:-53235906 | None:intergenic |
GTACAAGAGTTGGTAATATC+TGG | 0.402689 | 7:-53237638 | None:intergenic |
TATACCATTAACAAATCCTT+GGG | 0.415361 | 7:-53236996 | None:intergenic |
CAAATCTGTCAAGGTTGACT+TGG | 0.429040 | 7:-53237278 | None:intergenic |
AACATCAACAAAGTCCTTCC+CGG | 0.429875 | 7:-53235814 | None:intergenic |
TTGCCGTACGGTTAAAGTTA+AGG | 0.433936 | 7:+53237613 | MsG0780038798.01.T01:CDS |
AAAGTTCTGTTTGCCGAAGC+CGG | 0.435124 | 7:+53235795 | MsG0780038798.01.T01:CDS |
TCTGTAGCAAAATACATTGC+TGG | 0.449867 | 7:-53237809 | None:intergenic |
CGTTGCAATAATCTTCCATT+GGG | 0.454266 | 7:-53236013 | None:intergenic |
AACCATCCCATGAGGGATCA+AGG | 0.455585 | 7:+53237314 | MsG0780038798.01.T01:CDS |
TTAACAAATCCTTGGGGAAG+AGG | 0.456274 | 7:-53236989 | None:intergenic |
AGATTCTTTCTCTACAAGTC+TGG | 0.465034 | 7:-53235874 | None:intergenic |
TATTCCTGGTGATGGTTATG+TGG | 0.465235 | 7:+53237785 | MsG0780038798.01.T01:CDS |
AAGTTCTGTTTGCCGAAGCC+GGG | 0.470917 | 7:+53235796 | MsG0780038798.01.T01:CDS |
ACCATAATATTCTTCAACAC+GGG | 0.479315 | 7:-53237661 | None:intergenic |
TCTGAATGTCACTAAAGAAA+AGG | 0.482038 | 7:+53237135 | MsG0780038798.01.T01:CDS |
GTATACCATTAACAAATCCT+TGG | 0.483733 | 7:-53236997 | None:intergenic |
ACCAACTGTAACTGGCCCTA+TGG | 0.490979 | 7:-53235898 | None:intergenic |
AAATAAACCTTGATCCCTCA+TGG | 0.492248 | 7:-53237321 | None:intergenic |
CATCAACTGAAGCTAAGAAC+AGG | 0.521176 | 7:+53237574 | MsG0780038798.01.T01:CDS |
GCGTTGCAATAATCTTCCAT+TGG | 0.521465 | 7:-53236014 | None:intergenic |
TTGATCCTTGCATTGCCGTA+CGG | 0.530350 | 7:+53237601 | MsG0780038798.01.T01:CDS |
TCATCAGTTATGACATAAGT+AGG | 0.532648 | 7:-53237019 | None:intergenic |
GTAGAGAAAGAATCTACCAT+AGG | 0.532972 | 7:+53235882 | MsG0780038798.01.T01:CDS |
AACCTTGATCCCTCATGGGA+TGG | 0.541784 | 7:-53237316 | None:intergenic |
TCAACACGGGGTACAAGAGT+TGG | 0.548412 | 7:-53237648 | None:intergenic |
TTCCTTAAACCTCTTCCCCA+AGG | 0.550383 | 7:+53236980 | MsG0780038798.01.T01:CDS |
GTTCCTTAACTTTAACCGTA+CGG | 0.553820 | 7:-53237616 | None:intergenic |
ACCATAGGGCCAGTTACAGT+TGG | 0.556036 | 7:+53235897 | MsG0780038798.01.T01:CDS |
CATTTGCTTGATTGTCTCAG+TGG | 0.559381 | 7:-53235973 | None:intergenic |
TTTCTCTACAAGTCTGGCGA+TGG | 0.566855 | 7:-53235868 | None:intergenic |
GGCTGCTACTACTACTCAAG+TGG | 0.569254 | 7:+53235728 | MsG0780038798.01.T01:CDS |
CCCTAGTTCGGTAAAAGAAG+TGG | 0.574182 | 7:+53237111 | MsG0780038798.01.T01:CDS |
TCTGTTTGCCGAAGCCGGGA+AGG | 0.574481 | 7:+53235800 | MsG0780038798.01.T01:CDS |
TAGAGAAAGAATCTACCATA+GGG | 0.577400 | 7:+53235883 | MsG0780038798.01.T01:CDS |
AATAAACCTTGATCCCTCAT+GGG | 0.583807 | 7:-53237320 | None:intergenic |
CTCTAGAAACAAATCTGTCA+AGG | 0.583949 | 7:-53237287 | None:intergenic |
AATGTGATTATTCCTGGTGA+TGG | 0.586961 | 7:+53237777 | MsG0780038798.01.T01:CDS |
ATTGCCACTAATTTCAACAT+CGG | 0.590708 | 7:-53237347 | None:intergenic |
AACCATAATATTCTTCAACA+CGG | 0.604903 | 7:-53237662 | None:intergenic |
AAACTCACTCTATAAAAGTG+TGG | 0.625241 | 7:+53235926 | MsG0780038798.01.T01:CDS |
TTTAACCGTACGGCAATGCA+AGG | 0.625864 | 7:-53237606 | None:intergenic |
AGTCTGGCGATGGTTCCTAA+AGG | 0.627276 | 7:-53235858 | None:intergenic |
TATAAGAAAATCTGATAACA+AGG | 0.628383 | 7:+53237393 | MsG0780038798.01.T01:CDS |
GAGTTGAAACCATCCCATGA+GGG | 0.630988 | 7:+53237307 | MsG0780038798.01.T01:CDS |
GCTACATCCAATCAACCCAA+TGG | 0.632922 | 7:+53235998 | MsG0780038798.01.T01:CDS |
AGTGTGGCAGATCTTGATGA+AGG | 0.650226 | 7:+53235942 | MsG0780038798.01.T01:CDS |
CCATAATATTCTTCAACACG+GGG | 0.651169 | 7:-53237660 | None:intergenic |
TGGACCACATAACCATCACC+AGG | 0.651252 | 7:-53237789 | None:intergenic |
AGAGTTGAAACCATCCCATG+AGG | 0.679599 | 7:+53237306 | MsG0780038798.01.T01:CDS |
TGGTTCCTAAAGGCATTGTG+AGG | 0.685762 | 7:-53235848 | None:intergenic |
ATACCATTAACAAATCCTTG+GGG | 0.744050 | 7:-53236995 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGATTAGGTTAAATTAAAT+AGG | + | Chr7:53236553-53236572 | MsG0780038798.01.T01:intron | 15.0% |
!! | AGATTAGGTTAAATTAAATA+GGG | + | Chr7:53236554-53236573 | MsG0780038798.01.T01:intron | 15.0% |
!! | TCAATAAAAAAAATTAAGAG+AGG | - | Chr7:53237206-53237225 | None:intergenic | 15.0% |
!! | TATAAAAATTAGAGACACAT+AGG | - | Chr7:53236706-53236725 | None:intergenic | 20.0% |
!! | TATAAGAAAATCTGATAACA+AGG | + | Chr7:53237393-53237412 | MsG0780038798.01.T01:CDS | 20.0% |
!!! | AAACTTCTTTTAAACGAAAA+TGG | + | Chr7:53235768-53235787 | MsG0780038798.01.T01:CDS | 20.0% |
! | AACCATAATATTCTTCAACA+CGG | - | Chr7:53237665-53237684 | None:intergenic | 25.0% |
! | AAGTGGAATCTATAACAATT+GGG | + | Chr7:53236386-53236405 | MsG0780038798.01.T01:intron | 25.0% |
! | ATAGGAGCAATTATTAAAGT+AGG | - | Chr7:53236090-53236109 | None:intergenic | 25.0% |
! | ATGTAATTGTGAATAACAAG+AGG | - | Chr7:53236655-53236674 | None:intergenic | 25.0% |
! | GTTTCTGATTAATTGCAAAT+TGG | + | Chr7:53236363-53236382 | MsG0780038798.01.T01:intron | 25.0% |
! | TACGTAACTCTTAAAGAATT+CGG | - | Chr7:53236864-53236883 | None:intergenic | 25.0% |
! | TATACCATTAACAAATCCTT+GGG | - | Chr7:53236999-53237018 | None:intergenic | 25.0% |
! | TGAAAAACTGAGATTGTTTA+CGG | - | Chr7:53236295-53236314 | None:intergenic | 25.0% |
! | TTATCTAATGTGATTATTCC+TGG | + | Chr7:53237771-53237790 | MsG0780038798.01.T01:CDS | 25.0% |
! | TTCGTTTAAAAGAAGTTTCA+AGG | - | Chr7:53235766-53235785 | None:intergenic | 25.0% |
! | TTTGCAATTAATCAGAAACT+AGG | - | Chr7:53236362-53236381 | None:intergenic | 25.0% |
!! | AAGTTTTCTTACATATCCTT+TGG | + | Chr7:53237455-53237474 | MsG0780038798.01.T01:intron | 25.0% |
!! | AGTTTTCTTACATATCCTTT+GGG | + | Chr7:53237456-53237475 | MsG0780038798.01.T01:intron | 25.0% |
!!! | TAACTAGCTTTAGATTGATT+TGG | - | Chr7:53237375-53237394 | None:intergenic | 25.0% |
AAACTCACTCTATAAAAGTG+TGG | + | Chr7:53235926-53235945 | MsG0780038798.01.T01:CDS | 30.0% | |
AAAGTGGTTTCTTTCTTAAC+AGG | + | Chr7:53236483-53236502 | MsG0780038798.01.T01:intron | 30.0% | |
AAGTGGTTTCTTTCTTAACA+GGG | + | Chr7:53236484-53236503 | MsG0780038798.01.T01:intron | 30.0% | |
ACCATAATATTCTTCAACAC+GGG | - | Chr7:53237664-53237683 | None:intergenic | 30.0% | |
AGATGAAACAAAGAAAGAGA+AGG | + | Chr7:53236449-53236468 | MsG0780038798.01.T01:intron | 30.0% | |
ATACCATTAACAAATCCTTG+GGG | - | Chr7:53236998-53237017 | None:intergenic | 30.0% | |
ATTGCCACTAATTTCAACAT+CGG | - | Chr7:53237350-53237369 | None:intergenic | 30.0% | |
CATCTTCAAATTCTCAAATC+TGG | + | Chr7:53237720-53237739 | MsG0780038798.01.T01:CDS | 30.0% | |
CTATGATATAAATGTCGATG+TGG | + | Chr7:53236935-53236954 | MsG0780038798.01.T01:intron | 30.0% | |
CTTGTATAGTCAATACAGTT+TGG | - | Chr7:53237058-53237077 | None:intergenic | 30.0% | |
GAAAAACTGAGATTGTTTAC+GGG | - | Chr7:53236294-53236313 | None:intergenic | 30.0% | |
GAAGTGGAATCTATAACAAT+TGG | + | Chr7:53236385-53236404 | MsG0780038798.01.T01:intron | 30.0% | |
GAATTGTTCGAATATTTGGT+GGG | + | Chr7:53237481-53237500 | MsG0780038798.01.T01:intron | 30.0% | |
GATTAATTGCAAATTGGAAG+TGG | + | Chr7:53236369-53236388 | MsG0780038798.01.T01:intron | 30.0% | |
GTATACCATTAACAAATCCT+TGG | - | Chr7:53237000-53237019 | None:intergenic | 30.0% | |
TAGAGAAAGAATCTACCATA+GGG | + | Chr7:53235883-53235902 | MsG0780038798.01.T01:CDS | 30.0% | |
TCATCAGTTATGACATAAGT+AGG | - | Chr7:53237022-53237041 | None:intergenic | 30.0% | |
TCTGAATGTCACTAAAGAAA+AGG | + | Chr7:53237135-53237154 | MsG0780038798.01.T01:CDS | 30.0% | |
TTAAAGAATTCGGTACGTAA+GGG | - | Chr7:53236854-53236873 | None:intergenic | 30.0% | |
! | CTTCAGTTGATGTGAAATAT+TGG | - | Chr7:53237566-53237585 | None:intergenic | 30.0% |
! | TTTTCCGATGTTGAAATTAG+TGG | + | Chr7:53237343-53237362 | MsG0780038798.01.T01:CDS | 30.0% |
AAATAAACCTTGATCCCTCA+TGG | - | Chr7:53237324-53237343 | None:intergenic | 35.0% | |
AACAAAGAAAGAGAAGGATC+TGG | + | Chr7:53236455-53236474 | MsG0780038798.01.T01:intron | 35.0% | |
AATAAACCTTGATCCCTCAT+GGG | - | Chr7:53237323-53237342 | None:intergenic | 35.0% | |
AATGTGATTATTCCTGGTGA+TGG | + | Chr7:53237777-53237796 | MsG0780038798.01.T01:CDS | 35.0% | |
ACAAAGAAAGAGAAGGATCT+GGG | + | Chr7:53236456-53236475 | MsG0780038798.01.T01:intron | 35.0% | |
ACACAATTCGTAATTCGTTC+CGG | - | Chr7:53236913-53236932 | None:intergenic | 35.0% | |
AGATTCTTTCTCTACAAGTC+TGG | - | Chr7:53235877-53235896 | None:intergenic | 35.0% | |
AGTGGTTTCTTTCTTAACAG+GGG | + | Chr7:53236485-53236504 | MsG0780038798.01.T01:intron | 35.0% | |
CATAATTCGCTACCTTAACA+AGG | + | Chr7:53236158-53236177 | MsG0780038798.01.T01:intron | 35.0% | |
CCATAATATTCTTCAACACG+GGG | - | Chr7:53237663-53237682 | None:intergenic | 35.0% | |
CGTTGCAATAATCTTCCATT+GGG | - | Chr7:53236016-53236035 | None:intergenic | 35.0% | |
CTTAAAGAATTCGGTACGTA+AGG | - | Chr7:53236855-53236874 | None:intergenic | 35.0% | |
GGAATTGTTCGAATATTTGG+TGG | + | Chr7:53237480-53237499 | MsG0780038798.01.T01:intron | 35.0% | |
GGTGGAATTGTTCGAATATT+TGG | + | Chr7:53237477-53237496 | MsG0780038798.01.T01:intron | 35.0% | |
GTAGAGAAAGAATCTACCAT+AGG | + | Chr7:53235882-53235901 | MsG0780038798.01.T01:CDS | 35.0% | |
GTTCCTTAACTTTAACCGTA+CGG | - | Chr7:53237619-53237638 | None:intergenic | 35.0% | |
TAAAGAATTCGGTACGTAAG+GGG | - | Chr7:53236853-53236872 | None:intergenic | 35.0% | |
TACAAGATTTAGTCTGTTCC+AGG | + | Chr7:53237072-53237091 | MsG0780038798.01.T01:CDS | 35.0% | |
TCTGTAGCAAAATACATTGC+TGG | - | Chr7:53237812-53237831 | None:intergenic | 35.0% | |
TGAATAACAAGAGGCAGTAT+CGG | - | Chr7:53236646-53236665 | None:intergenic | 35.0% | |
TGGCATAAAAAACCCTAGTT+CGG | + | Chr7:53237099-53237118 | MsG0780038798.01.T01:CDS | 35.0% | |
TTTAGACAACCAACTGTAAC+TGG | - | Chr7:53235909-53235928 | None:intergenic | 35.0% | |
TTTCTTACATATCCTTTGGG+TGG | + | Chr7:53237459-53237478 | MsG0780038798.01.T01:intron | 35.0% | |
! | CTCTAGAAACAAATCTGTCA+AGG | - | Chr7:53237290-53237309 | None:intergenic | 35.0% |
! | GTACAAGAGCATAGTTGATT+TGG | + | Chr7:53237533-53237552 | MsG0780038798.01.T01:CDS | 35.0% |
! | TTTAGTCTGTTCCAGGATTT+TGG | + | Chr7:53237079-53237098 | MsG0780038798.01.T01:CDS | 35.0% |
!! | AACAAGGTATTGTATGCTCA+AGG | + | Chr7:53237409-53237428 | MsG0780038798.01.T01:intron | 35.0% |
!! | ACAAGGTATTGTATGCTCAA+GGG | + | Chr7:53237410-53237429 | MsG0780038798.01.T01:intron | 35.0% |
!! | GTACAAGAGTTGGTAATATC+TGG | - | Chr7:53237641-53237660 | None:intergenic | 35.0% |
!! | TAATCTTCCATTGGGTTGAT+TGG | - | Chr7:53236008-53236027 | None:intergenic | 35.0% |
!!! | CATCTAGTTTTGAATCCTAC+GGG | + | Chr7:53236316-53236335 | MsG0780038798.01.T01:intron | 35.0% |
!!! | CCATCTAGTTTTGAATCCTA+CGG | + | Chr7:53236315-53236334 | MsG0780038798.01.T01:intron | 35.0% |
!!! | GGTTTTTTATGCCAAAATCC+TGG | - | Chr7:53237093-53237112 | None:intergenic | 35.0% |
AACATCAACAAAGTCCTTCC+CGG | - | Chr7:53235817-53235836 | None:intergenic | 40.0% | |
ATTCGAACAATTCCACCCAA+AGG | - | Chr7:53237474-53237493 | None:intergenic | 40.0% | |
CAAATCTGTCAAGGTTGACT+TGG | - | Chr7:53237281-53237300 | None:intergenic | 40.0% | |
CATCAACTGAAGCTAAGAAC+AGG | + | Chr7:53237574-53237593 | MsG0780038798.01.T01:CDS | 40.0% | |
CATTTGCTTGATTGTCTCAG+TGG | - | Chr7:53235976-53235995 | None:intergenic | 40.0% | |
CCCCGTGTTGAAGAATATTA+TGG | + | Chr7:53237660-53237679 | MsG0780038798.01.T01:CDS | 40.0% | |
CCGTAGGATTCAAAACTAGA+TGG | - | Chr7:53236318-53236337 | None:intergenic | 40.0% | |
GCGTTGCAATAATCTTCCAT+TGG | - | Chr7:53236017-53236036 | None:intergenic | 40.0% | |
GGAAGAGGTTTAAGGAAAAC+TGG | - | Chr7:53236977-53236996 | None:intergenic | 40.0% | |
GTTTCTTTCTTAACAGGGGT+AGG | + | Chr7:53236489-53236508 | MsG0780038798.01.T01:intron | 40.0% | |
TGAATCCTACGGGAAGAAAA+GGG | + | Chr7:53236326-53236345 | MsG0780038798.01.T01:intron | 40.0% | |
TGATGTGATCATATCGCGAT+AGG | - | Chr7:53236108-53236127 | None:intergenic | 40.0% | |
TTAACAAATCCTTGGGGAAG+AGG | - | Chr7:53236992-53237011 | None:intergenic | 40.0% | |
TTGAATCCTACGGGAAGAAA+AGG | + | Chr7:53236325-53236344 | MsG0780038798.01.T01:intron | 40.0% | |
TTGCCGTACGGTTAAAGTTA+AGG | + | Chr7:53237613-53237632 | MsG0780038798.01.T01:CDS | 40.0% | |
TTTGGTGGGAATTGTTCCTT+GGG | + | Chr7:53237495-53237514 | MsG0780038798.01.T01:intron | 40.0% | |
! | AAATCAAAGCACCAATCCCA+TGG | + | Chr7:53236259-53236278 | MsG0780038798.01.T01:intron | 40.0% |
! | ACGTAAGGGGTATACATAGT+CGG | - | Chr7:53236840-53236859 | None:intergenic | 40.0% |
! | ATTTGGTGGGAATTGTTCCT+TGG | + | Chr7:53237494-53237513 | MsG0780038798.01.T01:intron | 40.0% |
! | CCACTTCTTTTACCGAACTA+GGG | - | Chr7:53237114-53237133 | None:intergenic | 40.0% |
! | GGAAGTGTAAGAACTAGACT+AGG | - | Chr7:53236625-53236644 | None:intergenic | 40.0% |
!! | CTTCCCCAAGGATTTGTTAA+TGG | + | Chr7:53236992-53237011 | MsG0780038798.01.T01:CDS | 40.0% |
!! | TATTCCTGGTGATGGTTATG+TGG | + | Chr7:53237785-53237804 | MsG0780038798.01.T01:CDS | 40.0% |
AAAGTTCTGTTTGCCGAAGC+CGG | + | Chr7:53235795-53235814 | MsG0780038798.01.T01:CDS | 45.0% | |
AGAGTTGAAACCATCCCATG+AGG | + | Chr7:53237306-53237325 | MsG0780038798.01.T01:CDS | 45.0% | |
AGCTTCCTCACAATGCCTTT+AGG | + | Chr7:53235843-53235862 | MsG0780038798.01.T01:CDS | 45.0% | |
AGTGTGGCAGATCTTGATGA+AGG | + | Chr7:53235942-53235961 | MsG0780038798.01.T01:CDS | 45.0% | |
ATCCTTGGGGAAGAGGTTTA+AGG | - | Chr7:53236985-53237004 | None:intergenic | 45.0% | |
CAATCCATTAATGCTGCCCA+AGG | - | Chr7:53237514-53237533 | None:intergenic | 45.0% | |
CAATTCGCGGTTCCTTGTTA+AGG | - | Chr7:53236173-53236192 | None:intergenic | 45.0% | |
CCCTAGTTCGGTAAAAGAAG+TGG | + | Chr7:53237111-53237130 | MsG0780038798.01.T01:CDS | 45.0% | |
CTGCGAATTCCTCACGAATT+TGG | - | Chr7:53236239-53236258 | None:intergenic | 45.0% | |
CTTAACAAGGAACCGCGAAT+TGG | + | Chr7:53236171-53236190 | MsG0780038798.01.T01:intron | 45.0% | |
GAGTTGAAACCATCCCATGA+GGG | + | Chr7:53237307-53237326 | MsG0780038798.01.T01:CDS | 45.0% | |
GCTACATCCAATCAACCCAA+TGG | + | Chr7:53235998-53236017 | MsG0780038798.01.T01:CDS | 45.0% | |
TCTTAACAGGGGTAGGTGAA+GGG | + | Chr7:53236496-53236515 | MsG0780038798.01.T01:intron | 45.0% | |
TGTTCCTTGGGCAGCATTAA+TGG | + | Chr7:53237507-53237526 | MsG0780038798.01.T01:intron | 45.0% | |
TTACGGGTTCTCTCTTCCAT+GGG | - | Chr7:53236278-53236297 | None:intergenic | 45.0% | |
TTCCTTAAACCTCTTCCCCA+AGG | + | Chr7:53236980-53236999 | MsG0780038798.01.T01:CDS | 45.0% | |
TTCTTAACAGGGGTAGGTGA+AGG | + | Chr7:53236495-53236514 | MsG0780038798.01.T01:intron | 45.0% | |
TTGATCCTTGCATTGCCGTA+CGG | + | Chr7:53237601-53237620 | MsG0780038798.01.T01:CDS | 45.0% | |
TTTAACCGTACGGCAATGCA+AGG | - | Chr7:53237609-53237628 | None:intergenic | 45.0% | |
TTTACGGGTTCTCTCTTCCA+TGG | - | Chr7:53236279-53236298 | None:intergenic | 45.0% | |
TTTCTCTACAAGTCTGGCGA+TGG | - | Chr7:53235871-53235890 | None:intergenic | 45.0% | |
! | AATTGCCCTTTTCTTCCCGT+AGG | - | Chr7:53236334-53236353 | None:intergenic | 45.0% |
! | GCCACTTCTTTTACCGAACT+AGG | - | Chr7:53237115-53237134 | None:intergenic | 45.0% |
!! | TACATAGTCGGTTCGCTGTT+CGG | - | Chr7:53236828-53236847 | None:intergenic | 45.0% |
!! | TGGTTCCTAAAGGCATTGTG+AGG | - | Chr7:53235851-53235870 | None:intergenic | 45.0% |
!!! | ATAATATTATTGTTTTATAT+AGG | + | Chr7:53237225-53237244 | MsG0780038798.01.T01:intron | 5.0% |
!!! | TTTTTATTTTTTTAAAGATT+AGG | + | Chr7:53236539-53236558 | MsG0780038798.01.T01:intron | 5.0% |
AACAAAGTCCTTCCCGGCTT+CGG | - | Chr7:53235811-53235830 | None:intergenic | 50.0% | |
AACCATCCCATGAGGGATCA+AGG | + | Chr7:53237314-53237333 | MsG0780038798.01.T01:CDS | 50.0% | |
AACCTTGATCCCTCATGGGA+TGG | - | Chr7:53237319-53237338 | None:intergenic | 50.0% | |
AAGTTCTGTTTGCCGAAGCC+GGG | + | Chr7:53235796-53235815 | MsG0780038798.01.T01:CDS | 50.0% | |
ACCAACTGTAACTGGCCCTA+TGG | - | Chr7:53235901-53235920 | None:intergenic | 50.0% | |
ACCATAGGGCCAGTTACAGT+TGG | + | Chr7:53235897-53235916 | MsG0780038798.01.T01:CDS | 50.0% | |
AGTCTGGCGATGGTTCCTAA+AGG | - | Chr7:53235861-53235880 | None:intergenic | 50.0% | |
CCTCACGAATTTGGACGAAC+CGG | - | Chr7:53236230-53236249 | None:intergenic | 50.0% | |
GGCTGCTACTACTACTCAAG+TGG | + | Chr7:53235728-53235747 | MsG0780038798.01.T01:CDS | 50.0% | |
GGTTCTCTCTTCCATGGGAT+TGG | - | Chr7:53236273-53236292 | None:intergenic | 50.0% | |
TCAACACGGGGTACAAGAGT+TGG | - | Chr7:53237651-53237670 | None:intergenic | 50.0% | |
TCCGGTACGTGGTACGAATT+CGG | - | Chr7:53236895-53236914 | None:intergenic | 50.0% | |
TCGTAATTCGTTCCGGTACG+TGG | - | Chr7:53236906-53236925 | None:intergenic | 50.0% | |
TGGACCACATAACCATCACC+AGG | - | Chr7:53237792-53237811 | None:intergenic | 50.0% | |
! | TTCGCGGTACTTTTGCGAAC+CGG | + | Chr7:53236208-53236227 | MsG0780038798.01.T01:intron | 50.0% |
!! | AAAAGTACCGCGAACCGGTA+CGG | - | Chr7:53236202-53236221 | None:intergenic | 50.0% |
!! | TTCGCAAAAGTACCGCGAAC+CGG | - | Chr7:53236207-53236226 | None:intergenic | 50.0% |
CCCGAATTCGTACCACGTAC+CGG | + | Chr7:53236891-53236910 | MsG0780038798.01.T01:intron | 55.0% | |
CCGGTACGTGGTACGAATTC+GGG | - | Chr7:53236894-53236913 | None:intergenic | 55.0% | |
GAAGGATCTGGGCGTGAAAG+TGG | + | Chr7:53236467-53236486 | MsG0780038798.01.T01:intron | 55.0% | |
GGTACGGACGAACCAATTCG+CGG | - | Chr7:53236186-53236205 | None:intergenic | 55.0% | |
GTGGTACGAATTCGGGTACG+CGG | - | Chr7:53236887-53236906 | None:intergenic | 55.0% | |
! | CCGGTTCGTCCAAATTCGTG+AGG | + | Chr7:53236227-53236246 | MsG0780038798.01.T01:intron | 55.0% |
!! | GCGAATTGGTTCGTCCGTAC+CGG | + | Chr7:53236185-53236204 | MsG0780038798.01.T01:intron | 55.0% |
TCTGTTTGCCGAAGCCGGGA+AGG | + | Chr7:53235800-53235819 | MsG0780038798.01.T01:CDS | 60.0% | |
!! | GGTTCGTCCGTACCGGTTCG+CGG | + | Chr7:53236192-53236211 | MsG0780038798.01.T01:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 53235726 | 53237845 | 53235726 | ID=MsG0780038798.01;Name=MsG0780038798.01 |
Chr7 | mRNA | 53235726 | 53237845 | 53235726 | ID=MsG0780038798.01.T01;Parent=MsG0780038798.01;Name=MsG0780038798.01.T01;_AED=0.45;_eAED=0.46;_QI=0|0|0|1|1|1|4|0|344 |
Chr7 | exon | 53235726 | 53236083 | 53235726 | ID=MsG0780038798.01.T01:exon:8461;Parent=MsG0780038798.01.T01 |
Chr7 | exon | 53236978 | 53237156 | 53236978 | ID=MsG0780038798.01.T01:exon:8462;Parent=MsG0780038798.01.T01 |
Chr7 | exon | 53237247 | 53237419 | 53237247 | ID=MsG0780038798.01.T01:exon:8463;Parent=MsG0780038798.01.T01 |
Chr7 | exon | 53237521 | 53237845 | 53237521 | ID=MsG0780038798.01.T01:exon:8464;Parent=MsG0780038798.01.T01 |
Chr7 | CDS | 53235726 | 53236083 | 53235726 | ID=MsG0780038798.01.T01:cds;Parent=MsG0780038798.01.T01 |
Chr7 | CDS | 53236978 | 53237156 | 53236978 | ID=MsG0780038798.01.T01:cds;Parent=MsG0780038798.01.T01 |
Chr7 | CDS | 53237247 | 53237419 | 53237247 | ID=MsG0780038798.01.T01:cds;Parent=MsG0780038798.01.T01 |
Chr7 | CDS | 53237521 | 53237845 | 53237521 | ID=MsG0780038798.01.T01:cds;Parent=MsG0780038798.01.T01 |
Gene Sequence |
Protein sequence |