AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038798.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038798.01.T01 MTR_7g062280 63.768 414 66 5 3 332 2 415 2.41e-166 473
MsG0780038798.01.T01 MTR_7g062300 63.300 406 71 5 1 332 1 402 3.63e-161 459
MsG0780038798.01.T01 MTR_7g063920 60.647 371 96 6 1 332 1 360 2.74e-138 400
MsG0780038798.01.T01 MTR_7g063900 46.190 420 145 6 3 342 2 420 7.95e-106 319
MsG0780038798.01.T01 MTR_7g063830 46.316 380 133 5 3 313 2 379 8.10e-100 302
MsG0780038798.01.T01 MTR_7g063830 26.702 191 129 5 8 196 251 432 5.44e-11 63.9
MsG0780038798.01.T01 MTR_7g063820 46.214 383 129 7 3 313 2 379 2.15e-94 289
MsG0780038798.01.T01 MTR_7g063840 45.946 370 134 6 9 314 8 375 1.93e-93 286
MsG0780038798.01.T01 MTR_7g063880 46.494 385 122 8 1 315 1 371 3.28e-91 281
MsG0780038798.01.T01 MTR_7g063660 46.518 359 124 5 10 302 8 364 1.60e-85 266
MsG0780038798.01.T01 MTR_3g007740 42.932 382 111 8 7 314 5 353 1.25e-81 255
MsG0780038798.01.T01 MTR_3g007740 26.238 202 128 6 9 196 242 436 3.27e-11 64.7
MsG0780038798.01.T01 MTR_7g063890 44.557 395 126 6 8 335 24 392 1.75e-81 256
MsG0780038798.01.T01 MTR_7g063670 44.681 329 97 5 9 264 13 329 2.91e-72 231
MsG0780038798.01.T01 MTR_7g063670 28.079 203 124 6 9 196 250 445 1.72e-12 68.6
MsG0780038798.01.T01 MTR_3g065200 38.781 361 134 8 11 318 3 329 3.91e-65 213
MsG0780038798.01.T01 MTR_7g062270 55.376 186 50 3 1 154 1 185 5.13e-58 192
MsG0780038798.01.T01 MTR_7g066430 36.158 354 133 7 12 280 5 350 1.17e-52 181
MsG0780038798.01.T01 MTR_7g066570 34.943 352 145 7 4 280 8 350 7.40e-52 181
MsG0780038798.01.T01 MTR_7g066480 37.931 319 123 6 11 256 16 332 1.78e-51 176
MsG0780038798.01.T01 MTR_7g066260 36.111 360 147 8 1 280 6 362 2.90e-50 175
MsG0780038798.01.T01 MTR_7g066260 30.653 199 108 9 14 196 272 456 5.72e-14 73.2
MsG0780038798.01.T01 MTR_7g066340 33.333 366 150 11 3 285 5 359 7.66e-49 171
MsG0780038798.01.T01 MTR_7g066340 30.457 197 121 7 7 196 260 447 3.02e-16 79.7
MsG0780038798.01.T01 MTR_7g012680 35.475 358 131 9 1 280 1 336 3.40e-48 168
MsG0780038798.01.T01 MTR_7g012680 29.245 212 109 7 9 194 241 437 8.72e-12 66.2
MsG0780038798.01.T01 MTR_7g066490 37.143 315 117 7 11 256 16 318 3.29e-46 162
MsG0780038798.01.T01 MTR_7g066580 36.335 322 141 8 23 290 7 318 5.81e-46 162
MsG0780038798.01.T01 MTR_7g066410 33.333 378 153 8 1 280 1 377 2.54e-45 162
MsG0780038798.01.T01 MTR_7g063690 42.259 239 105 6 1 236 1 209 3.28e-45 155
MsG0780038798.01.T01 MTR_7g066350 34.463 354 153 7 3 279 2 353 9.58e-45 159
MsG0780038798.01.T01 MTR_7g058710 31.414 382 167 9 2 302 3 370 2.12e-44 159
MsG0780038798.01.T01 MTR_2g029400 36.301 292 144 5 10 279 13 284 3.29e-44 157
MsG0780038798.01.T01 MTR_1g041315 32.216 388 165 12 1 294 1 384 9.01e-44 157
MsG0780038798.01.T01 MTR_1g041315 30.921 152 87 4 4 146 271 413 8.30e-17 81.6
MsG0780038798.01.T01 MTR_7g066360 34.530 362 143 9 1 280 1 350 3.80e-40 147
MsG0780038798.01.T01 MTR_7g066290 33.426 359 157 8 1 280 5 360 6.41e-39 143
MsG0780038798.01.T01 MTR_1g014060 32.588 313 149 5 19 298 8 291 2.19e-38 141
MsG0780038798.01.T01 MTR_7g066310 35.135 296 161 7 5 280 2 286 2.56e-35 133
MsG0780038798.01.T01 MTR_7g066310 30.303 198 120 8 7 196 190 377 6.61e-15 75.5
MsG0780038798.01.T01 MTR_7g066400 31.063 367 147 12 11 304 12 345 2.89e-34 131
MsG0780038798.01.T01 MTR_7g066400 26.923 208 121 7 7 196 237 431 2.25e-12 68.2
MsG0780038798.01.T01 MTR_4g019310 35.336 283 134 6 14 248 11 292 1.77e-31 124
MsG0780038798.01.T01 MTR_7g058700 29.377 337 121 9 23 272 531 837 4.76e-28 115
MsG0780038798.01.T01 MTR_7g058700 26.702 191 108 8 11 196 752 915 4.71e-11 64.7
MsG0780038798.01.T01 MTR_7g063870 36.066 183 66 3 5 186 25 157 3.59e-27 107
MsG0780038798.01.T01 MTR_4g017470 28.125 352 178 13 1 291 1 338 1.47e-25 107
MsG0780038798.01.T01 MTR_4g017410 30.435 253 127 9 5 209 3 254 1.44e-22 98.6
MsG0780038798.01.T01 MTR_4g017440 27.642 369 172 14 12 291 15 377 1.31e-21 95.9
MsG0780038798.01.T01 MTR_4g019340 26.933 375 178 11 8 290 35 405 2.47e-21 95.1
MsG0780038798.01.T01 MTR_4g017830 28.620 297 159 11 1 248 1 293 6.55e-21 94.0
MsG0780038798.01.T01 MTR_1g115440 26.749 243 129 4 1 200 1 237 9.09e-20 87.4
MsG0780038798.01.T01 MTR_8g445860 28.750 240 121 7 1 200 7 236 2.78e-19 85.9
MsG0780038798.01.T01 MTR_0150s0010 27.984 243 125 5 1 200 1 236 7.03e-19 84.7
MsG0780038798.01.T01 MTR_4g017610 31.020 245 122 10 1 200 1 243 2.06e-18 86.3
MsG0780038798.01.T01 MTR_2g067310 37.349 166 89 6 3 162 34 190 1.81e-17 80.9
MsG0780038798.01.T01 MTR_7g063720 39.683 126 39 3 201 290 1 125 1.27e-16 78.6
MsG0780038798.01.T01 MTR_7g063720 31.455 213 100 8 13 196 25 220 1.69e-16 78.2
MsG0780038798.01.T01 MTR_7g100420 29.114 316 167 14 3 314 33 295 5.54e-16 79.0
MsG0780038798.01.T01 MTR_8g023240 29.439 214 130 7 9 203 35 246 3.48e-15 77.0
MsG0780038798.01.T01 MTR_1g115455 28.033 239 125 10 1 200 1 231 1.53e-12 66.6
MsG0780038798.01.T01 MTR_1g115450 39.362 94 48 2 1 94 1 85 5.19e-12 63.2
MsG0780038798.01.T01 MTR_1g115470 37.143 105 58 3 13 115 8 106 4.77e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038798.01.T01 AT3G09110 34.307 274 141 5 13 248 11 283 5.54e-39 141
MsG0780038798.01.T01 AT3G09120 37.391 230 102 4 10 199 5 232 3.52e-32 122
MsG0780038798.01.T01 AT5G01120 35.714 238 112 5 12 209 10 246 1.13e-31 124
MsG0780038798.01.T01 AT5G01150 31.786 280 146 4 13 248 11 289 4.55e-31 123
MsG0780038798.01.T01 AT3G09140 30.769 312 144 7 1 248 1 304 4.01e-29 117
MsG0780038798.01.T01 AT3G09140 24.215 223 131 6 10 201 277 492 2.61e-11 65.1
MsG0780038798.01.T01 AT5G01130 31.502 273 147 7 12 248 10 278 1.06e-27 113
MsG0780038798.01.T01 AT5G43240 31.408 277 139 4 12 238 10 285 1.65e-27 113
MsG0780038798.01.T01 AT5G43240 31.408 277 139 4 12 238 10 285 1.65e-27 113
MsG0780038798.01.T01 AT5G43240 31.408 277 139 4 12 238 10 285 1.65e-27 113
MsG0780038798.01.T01 AT3G09140 47.458 118 60 1 1 118 1 116 1.92e-25 107
MsG0780038798.01.T01 AT3G09140 24.215 223 131 6 10 201 305 520 2.31e-11 65.1
MsG0780038798.01.T01 AT5G37320 44.444 108 59 1 12 118 10 117 4.16e-21 94.4
MsG0780038798.01.T01 AT5G01140 29.758 289 139 9 1 248 1 266 4.72e-21 94.4

Find 68 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGTCTGTTCCAGGATTT+TGG 0.174814 7:+53237079 MsG0780038798.01.T01:CDS
ATCCTTGGGGAAGAGGTTTA+AGG 0.211704 7:-53236982 None:intergenic
TGTTCCTTGGGCAGCATTAA+TGG 0.216147 7:+53237507 MsG0780038798.01.T01:intron
CTTCCCCAAGGATTTGTTAA+TGG 0.224128 7:+53236992 MsG0780038798.01.T01:CDS
TAACTAGCTTTAGATTGATT+TGG 0.246947 7:-53237372 None:intergenic
CCCCGTGTTGAAGAATATTA+TGG 0.277621 7:+53237660 MsG0780038798.01.T01:CDS
CTTCAGTTGATGTGAAATAT+TGG 0.300242 7:-53237563 None:intergenic
GTACAAGAGCATAGTTGATT+TGG 0.308317 7:+53237533 MsG0780038798.01.T01:CDS
CATCTTCAAATTCTCAAATC+TGG 0.310312 7:+53237720 MsG0780038798.01.T01:CDS
TAATCTTCCATTGGGTTGAT+TGG 0.322996 7:-53236005 None:intergenic
TTATCTAATGTGATTATTCC+TGG 0.323308 7:+53237771 MsG0780038798.01.T01:CDS
TACAAGATTTAGTCTGTTCC+AGG 0.337305 7:+53237072 MsG0780038798.01.T01:CDS
CTTGTATAGTCAATACAGTT+TGG 0.367447 7:-53237055 None:intergenic
TTCGTTTAAAAGAAGTTTCA+AGG 0.368322 7:-53235763 None:intergenic
AGCTTCCTCACAATGCCTTT+AGG 0.369220 7:+53235843 MsG0780038798.01.T01:CDS
AACAAAGTCCTTCCCGGCTT+CGG 0.374291 7:-53235808 None:intergenic
TTTAGACAACCAACTGTAAC+TGG 0.382333 7:-53235906 None:intergenic
GTACAAGAGTTGGTAATATC+TGG 0.402689 7:-53237638 None:intergenic
TATACCATTAACAAATCCTT+GGG 0.415361 7:-53236996 None:intergenic
CAAATCTGTCAAGGTTGACT+TGG 0.429040 7:-53237278 None:intergenic
AACATCAACAAAGTCCTTCC+CGG 0.429875 7:-53235814 None:intergenic
TTGCCGTACGGTTAAAGTTA+AGG 0.433936 7:+53237613 MsG0780038798.01.T01:CDS
AAAGTTCTGTTTGCCGAAGC+CGG 0.435124 7:+53235795 MsG0780038798.01.T01:CDS
TCTGTAGCAAAATACATTGC+TGG 0.449867 7:-53237809 None:intergenic
CGTTGCAATAATCTTCCATT+GGG 0.454266 7:-53236013 None:intergenic
AACCATCCCATGAGGGATCA+AGG 0.455585 7:+53237314 MsG0780038798.01.T01:CDS
TTAACAAATCCTTGGGGAAG+AGG 0.456274 7:-53236989 None:intergenic
AGATTCTTTCTCTACAAGTC+TGG 0.465034 7:-53235874 None:intergenic
TATTCCTGGTGATGGTTATG+TGG 0.465235 7:+53237785 MsG0780038798.01.T01:CDS
AAGTTCTGTTTGCCGAAGCC+GGG 0.470917 7:+53235796 MsG0780038798.01.T01:CDS
ACCATAATATTCTTCAACAC+GGG 0.479315 7:-53237661 None:intergenic
TCTGAATGTCACTAAAGAAA+AGG 0.482038 7:+53237135 MsG0780038798.01.T01:CDS
GTATACCATTAACAAATCCT+TGG 0.483733 7:-53236997 None:intergenic
ACCAACTGTAACTGGCCCTA+TGG 0.490979 7:-53235898 None:intergenic
AAATAAACCTTGATCCCTCA+TGG 0.492248 7:-53237321 None:intergenic
CATCAACTGAAGCTAAGAAC+AGG 0.521176 7:+53237574 MsG0780038798.01.T01:CDS
GCGTTGCAATAATCTTCCAT+TGG 0.521465 7:-53236014 None:intergenic
TTGATCCTTGCATTGCCGTA+CGG 0.530350 7:+53237601 MsG0780038798.01.T01:CDS
TCATCAGTTATGACATAAGT+AGG 0.532648 7:-53237019 None:intergenic
GTAGAGAAAGAATCTACCAT+AGG 0.532972 7:+53235882 MsG0780038798.01.T01:CDS
AACCTTGATCCCTCATGGGA+TGG 0.541784 7:-53237316 None:intergenic
TCAACACGGGGTACAAGAGT+TGG 0.548412 7:-53237648 None:intergenic
TTCCTTAAACCTCTTCCCCA+AGG 0.550383 7:+53236980 MsG0780038798.01.T01:CDS
GTTCCTTAACTTTAACCGTA+CGG 0.553820 7:-53237616 None:intergenic
ACCATAGGGCCAGTTACAGT+TGG 0.556036 7:+53235897 MsG0780038798.01.T01:CDS
CATTTGCTTGATTGTCTCAG+TGG 0.559381 7:-53235973 None:intergenic
TTTCTCTACAAGTCTGGCGA+TGG 0.566855 7:-53235868 None:intergenic
GGCTGCTACTACTACTCAAG+TGG 0.569254 7:+53235728 MsG0780038798.01.T01:CDS
CCCTAGTTCGGTAAAAGAAG+TGG 0.574182 7:+53237111 MsG0780038798.01.T01:CDS
TCTGTTTGCCGAAGCCGGGA+AGG 0.574481 7:+53235800 MsG0780038798.01.T01:CDS
TAGAGAAAGAATCTACCATA+GGG 0.577400 7:+53235883 MsG0780038798.01.T01:CDS
AATAAACCTTGATCCCTCAT+GGG 0.583807 7:-53237320 None:intergenic
CTCTAGAAACAAATCTGTCA+AGG 0.583949 7:-53237287 None:intergenic
AATGTGATTATTCCTGGTGA+TGG 0.586961 7:+53237777 MsG0780038798.01.T01:CDS
ATTGCCACTAATTTCAACAT+CGG 0.590708 7:-53237347 None:intergenic
AACCATAATATTCTTCAACA+CGG 0.604903 7:-53237662 None:intergenic
AAACTCACTCTATAAAAGTG+TGG 0.625241 7:+53235926 MsG0780038798.01.T01:CDS
TTTAACCGTACGGCAATGCA+AGG 0.625864 7:-53237606 None:intergenic
AGTCTGGCGATGGTTCCTAA+AGG 0.627276 7:-53235858 None:intergenic
TATAAGAAAATCTGATAACA+AGG 0.628383 7:+53237393 MsG0780038798.01.T01:CDS
GAGTTGAAACCATCCCATGA+GGG 0.630988 7:+53237307 MsG0780038798.01.T01:CDS
GCTACATCCAATCAACCCAA+TGG 0.632922 7:+53235998 MsG0780038798.01.T01:CDS
AGTGTGGCAGATCTTGATGA+AGG 0.650226 7:+53235942 MsG0780038798.01.T01:CDS
CCATAATATTCTTCAACACG+GGG 0.651169 7:-53237660 None:intergenic
TGGACCACATAACCATCACC+AGG 0.651252 7:-53237789 None:intergenic
AGAGTTGAAACCATCCCATG+AGG 0.679599 7:+53237306 MsG0780038798.01.T01:CDS
TGGTTCCTAAAGGCATTGTG+AGG 0.685762 7:-53235848 None:intergenic
ATACCATTAACAAATCCTTG+GGG 0.744050 7:-53236995 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATTAGGTTAAATTAAAT+AGG + Chr7:53236553-53236572 MsG0780038798.01.T01:intron 15.0%
!! AGATTAGGTTAAATTAAATA+GGG + Chr7:53236554-53236573 MsG0780038798.01.T01:intron 15.0%
!! TCAATAAAAAAAATTAAGAG+AGG - Chr7:53237206-53237225 None:intergenic 15.0%
!! TATAAAAATTAGAGACACAT+AGG - Chr7:53236706-53236725 None:intergenic 20.0%
!! TATAAGAAAATCTGATAACA+AGG + Chr7:53237393-53237412 MsG0780038798.01.T01:CDS 20.0%
!!! AAACTTCTTTTAAACGAAAA+TGG + Chr7:53235768-53235787 MsG0780038798.01.T01:CDS 20.0%
! AACCATAATATTCTTCAACA+CGG - Chr7:53237665-53237684 None:intergenic 25.0%
! AAGTGGAATCTATAACAATT+GGG + Chr7:53236386-53236405 MsG0780038798.01.T01:intron 25.0%
! ATAGGAGCAATTATTAAAGT+AGG - Chr7:53236090-53236109 None:intergenic 25.0%
! ATGTAATTGTGAATAACAAG+AGG - Chr7:53236655-53236674 None:intergenic 25.0%
! GTTTCTGATTAATTGCAAAT+TGG + Chr7:53236363-53236382 MsG0780038798.01.T01:intron 25.0%
! TACGTAACTCTTAAAGAATT+CGG - Chr7:53236864-53236883 None:intergenic 25.0%
! TATACCATTAACAAATCCTT+GGG - Chr7:53236999-53237018 None:intergenic 25.0%
! TGAAAAACTGAGATTGTTTA+CGG - Chr7:53236295-53236314 None:intergenic 25.0%
! TTATCTAATGTGATTATTCC+TGG + Chr7:53237771-53237790 MsG0780038798.01.T01:CDS 25.0%
! TTCGTTTAAAAGAAGTTTCA+AGG - Chr7:53235766-53235785 None:intergenic 25.0%
! TTTGCAATTAATCAGAAACT+AGG - Chr7:53236362-53236381 None:intergenic 25.0%
!! AAGTTTTCTTACATATCCTT+TGG + Chr7:53237455-53237474 MsG0780038798.01.T01:intron 25.0%
!! AGTTTTCTTACATATCCTTT+GGG + Chr7:53237456-53237475 MsG0780038798.01.T01:intron 25.0%
!!! TAACTAGCTTTAGATTGATT+TGG - Chr7:53237375-53237394 None:intergenic 25.0%
AAACTCACTCTATAAAAGTG+TGG + Chr7:53235926-53235945 MsG0780038798.01.T01:CDS 30.0%
AAAGTGGTTTCTTTCTTAAC+AGG + Chr7:53236483-53236502 MsG0780038798.01.T01:intron 30.0%
AAGTGGTTTCTTTCTTAACA+GGG + Chr7:53236484-53236503 MsG0780038798.01.T01:intron 30.0%
ACCATAATATTCTTCAACAC+GGG - Chr7:53237664-53237683 None:intergenic 30.0%
AGATGAAACAAAGAAAGAGA+AGG + Chr7:53236449-53236468 MsG0780038798.01.T01:intron 30.0%
ATACCATTAACAAATCCTTG+GGG - Chr7:53236998-53237017 None:intergenic 30.0%
ATTGCCACTAATTTCAACAT+CGG - Chr7:53237350-53237369 None:intergenic 30.0%
CATCTTCAAATTCTCAAATC+TGG + Chr7:53237720-53237739 MsG0780038798.01.T01:CDS 30.0%
CTATGATATAAATGTCGATG+TGG + Chr7:53236935-53236954 MsG0780038798.01.T01:intron 30.0%
CTTGTATAGTCAATACAGTT+TGG - Chr7:53237058-53237077 None:intergenic 30.0%
GAAAAACTGAGATTGTTTAC+GGG - Chr7:53236294-53236313 None:intergenic 30.0%
GAAGTGGAATCTATAACAAT+TGG + Chr7:53236385-53236404 MsG0780038798.01.T01:intron 30.0%
GAATTGTTCGAATATTTGGT+GGG + Chr7:53237481-53237500 MsG0780038798.01.T01:intron 30.0%
GATTAATTGCAAATTGGAAG+TGG + Chr7:53236369-53236388 MsG0780038798.01.T01:intron 30.0%
GTATACCATTAACAAATCCT+TGG - Chr7:53237000-53237019 None:intergenic 30.0%
TAGAGAAAGAATCTACCATA+GGG + Chr7:53235883-53235902 MsG0780038798.01.T01:CDS 30.0%
TCATCAGTTATGACATAAGT+AGG - Chr7:53237022-53237041 None:intergenic 30.0%
TCTGAATGTCACTAAAGAAA+AGG + Chr7:53237135-53237154 MsG0780038798.01.T01:CDS 30.0%
TTAAAGAATTCGGTACGTAA+GGG - Chr7:53236854-53236873 None:intergenic 30.0%
! CTTCAGTTGATGTGAAATAT+TGG - Chr7:53237566-53237585 None:intergenic 30.0%
! TTTTCCGATGTTGAAATTAG+TGG + Chr7:53237343-53237362 MsG0780038798.01.T01:CDS 30.0%
AAATAAACCTTGATCCCTCA+TGG - Chr7:53237324-53237343 None:intergenic 35.0%
AACAAAGAAAGAGAAGGATC+TGG + Chr7:53236455-53236474 MsG0780038798.01.T01:intron 35.0%
AATAAACCTTGATCCCTCAT+GGG - Chr7:53237323-53237342 None:intergenic 35.0%
AATGTGATTATTCCTGGTGA+TGG + Chr7:53237777-53237796 MsG0780038798.01.T01:CDS 35.0%
ACAAAGAAAGAGAAGGATCT+GGG + Chr7:53236456-53236475 MsG0780038798.01.T01:intron 35.0%
ACACAATTCGTAATTCGTTC+CGG - Chr7:53236913-53236932 None:intergenic 35.0%
AGATTCTTTCTCTACAAGTC+TGG - Chr7:53235877-53235896 None:intergenic 35.0%
AGTGGTTTCTTTCTTAACAG+GGG + Chr7:53236485-53236504 MsG0780038798.01.T01:intron 35.0%
CATAATTCGCTACCTTAACA+AGG + Chr7:53236158-53236177 MsG0780038798.01.T01:intron 35.0%
CCATAATATTCTTCAACACG+GGG - Chr7:53237663-53237682 None:intergenic 35.0%
CGTTGCAATAATCTTCCATT+GGG - Chr7:53236016-53236035 None:intergenic 35.0%
CTTAAAGAATTCGGTACGTA+AGG - Chr7:53236855-53236874 None:intergenic 35.0%
GGAATTGTTCGAATATTTGG+TGG + Chr7:53237480-53237499 MsG0780038798.01.T01:intron 35.0%
GGTGGAATTGTTCGAATATT+TGG + Chr7:53237477-53237496 MsG0780038798.01.T01:intron 35.0%
GTAGAGAAAGAATCTACCAT+AGG + Chr7:53235882-53235901 MsG0780038798.01.T01:CDS 35.0%
GTTCCTTAACTTTAACCGTA+CGG - Chr7:53237619-53237638 None:intergenic 35.0%
TAAAGAATTCGGTACGTAAG+GGG - Chr7:53236853-53236872 None:intergenic 35.0%
TACAAGATTTAGTCTGTTCC+AGG + Chr7:53237072-53237091 MsG0780038798.01.T01:CDS 35.0%
TCTGTAGCAAAATACATTGC+TGG - Chr7:53237812-53237831 None:intergenic 35.0%
TGAATAACAAGAGGCAGTAT+CGG - Chr7:53236646-53236665 None:intergenic 35.0%
TGGCATAAAAAACCCTAGTT+CGG + Chr7:53237099-53237118 MsG0780038798.01.T01:CDS 35.0%
TTTAGACAACCAACTGTAAC+TGG - Chr7:53235909-53235928 None:intergenic 35.0%
TTTCTTACATATCCTTTGGG+TGG + Chr7:53237459-53237478 MsG0780038798.01.T01:intron 35.0%
! CTCTAGAAACAAATCTGTCA+AGG - Chr7:53237290-53237309 None:intergenic 35.0%
! GTACAAGAGCATAGTTGATT+TGG + Chr7:53237533-53237552 MsG0780038798.01.T01:CDS 35.0%
! TTTAGTCTGTTCCAGGATTT+TGG + Chr7:53237079-53237098 MsG0780038798.01.T01:CDS 35.0%
!! AACAAGGTATTGTATGCTCA+AGG + Chr7:53237409-53237428 MsG0780038798.01.T01:intron 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG + Chr7:53237410-53237429 MsG0780038798.01.T01:intron 35.0%
!! GTACAAGAGTTGGTAATATC+TGG - Chr7:53237641-53237660 None:intergenic 35.0%
!! TAATCTTCCATTGGGTTGAT+TGG - Chr7:53236008-53236027 None:intergenic 35.0%
!!! CATCTAGTTTTGAATCCTAC+GGG + Chr7:53236316-53236335 MsG0780038798.01.T01:intron 35.0%
!!! CCATCTAGTTTTGAATCCTA+CGG + Chr7:53236315-53236334 MsG0780038798.01.T01:intron 35.0%
!!! GGTTTTTTATGCCAAAATCC+TGG - Chr7:53237093-53237112 None:intergenic 35.0%
AACATCAACAAAGTCCTTCC+CGG - Chr7:53235817-53235836 None:intergenic 40.0%
ATTCGAACAATTCCACCCAA+AGG - Chr7:53237474-53237493 None:intergenic 40.0%
CAAATCTGTCAAGGTTGACT+TGG - Chr7:53237281-53237300 None:intergenic 40.0%
CATCAACTGAAGCTAAGAAC+AGG + Chr7:53237574-53237593 MsG0780038798.01.T01:CDS 40.0%
CATTTGCTTGATTGTCTCAG+TGG - Chr7:53235976-53235995 None:intergenic 40.0%
CCCCGTGTTGAAGAATATTA+TGG + Chr7:53237660-53237679 MsG0780038798.01.T01:CDS 40.0%
CCGTAGGATTCAAAACTAGA+TGG - Chr7:53236318-53236337 None:intergenic 40.0%
GCGTTGCAATAATCTTCCAT+TGG - Chr7:53236017-53236036 None:intergenic 40.0%
GGAAGAGGTTTAAGGAAAAC+TGG - Chr7:53236977-53236996 None:intergenic 40.0%
GTTTCTTTCTTAACAGGGGT+AGG + Chr7:53236489-53236508 MsG0780038798.01.T01:intron 40.0%
TGAATCCTACGGGAAGAAAA+GGG + Chr7:53236326-53236345 MsG0780038798.01.T01:intron 40.0%
TGATGTGATCATATCGCGAT+AGG - Chr7:53236108-53236127 None:intergenic 40.0%
TTAACAAATCCTTGGGGAAG+AGG - Chr7:53236992-53237011 None:intergenic 40.0%
TTGAATCCTACGGGAAGAAA+AGG + Chr7:53236325-53236344 MsG0780038798.01.T01:intron 40.0%
TTGCCGTACGGTTAAAGTTA+AGG + Chr7:53237613-53237632 MsG0780038798.01.T01:CDS 40.0%
TTTGGTGGGAATTGTTCCTT+GGG + Chr7:53237495-53237514 MsG0780038798.01.T01:intron 40.0%
! AAATCAAAGCACCAATCCCA+TGG + Chr7:53236259-53236278 MsG0780038798.01.T01:intron 40.0%
! ACGTAAGGGGTATACATAGT+CGG - Chr7:53236840-53236859 None:intergenic 40.0%
! ATTTGGTGGGAATTGTTCCT+TGG + Chr7:53237494-53237513 MsG0780038798.01.T01:intron 40.0%
! CCACTTCTTTTACCGAACTA+GGG - Chr7:53237114-53237133 None:intergenic 40.0%
! GGAAGTGTAAGAACTAGACT+AGG - Chr7:53236625-53236644 None:intergenic 40.0%
!! CTTCCCCAAGGATTTGTTAA+TGG + Chr7:53236992-53237011 MsG0780038798.01.T01:CDS 40.0%
!! TATTCCTGGTGATGGTTATG+TGG + Chr7:53237785-53237804 MsG0780038798.01.T01:CDS 40.0%
AAAGTTCTGTTTGCCGAAGC+CGG + Chr7:53235795-53235814 MsG0780038798.01.T01:CDS 45.0%
AGAGTTGAAACCATCCCATG+AGG + Chr7:53237306-53237325 MsG0780038798.01.T01:CDS 45.0%
AGCTTCCTCACAATGCCTTT+AGG + Chr7:53235843-53235862 MsG0780038798.01.T01:CDS 45.0%
AGTGTGGCAGATCTTGATGA+AGG + Chr7:53235942-53235961 MsG0780038798.01.T01:CDS 45.0%
ATCCTTGGGGAAGAGGTTTA+AGG - Chr7:53236985-53237004 None:intergenic 45.0%
CAATCCATTAATGCTGCCCA+AGG - Chr7:53237514-53237533 None:intergenic 45.0%
CAATTCGCGGTTCCTTGTTA+AGG - Chr7:53236173-53236192 None:intergenic 45.0%
CCCTAGTTCGGTAAAAGAAG+TGG + Chr7:53237111-53237130 MsG0780038798.01.T01:CDS 45.0%
CTGCGAATTCCTCACGAATT+TGG - Chr7:53236239-53236258 None:intergenic 45.0%
CTTAACAAGGAACCGCGAAT+TGG + Chr7:53236171-53236190 MsG0780038798.01.T01:intron 45.0%
GAGTTGAAACCATCCCATGA+GGG + Chr7:53237307-53237326 MsG0780038798.01.T01:CDS 45.0%
GCTACATCCAATCAACCCAA+TGG + Chr7:53235998-53236017 MsG0780038798.01.T01:CDS 45.0%
TCTTAACAGGGGTAGGTGAA+GGG + Chr7:53236496-53236515 MsG0780038798.01.T01:intron 45.0%
TGTTCCTTGGGCAGCATTAA+TGG + Chr7:53237507-53237526 MsG0780038798.01.T01:intron 45.0%
TTACGGGTTCTCTCTTCCAT+GGG - Chr7:53236278-53236297 None:intergenic 45.0%
TTCCTTAAACCTCTTCCCCA+AGG + Chr7:53236980-53236999 MsG0780038798.01.T01:CDS 45.0%
TTCTTAACAGGGGTAGGTGA+AGG + Chr7:53236495-53236514 MsG0780038798.01.T01:intron 45.0%
TTGATCCTTGCATTGCCGTA+CGG + Chr7:53237601-53237620 MsG0780038798.01.T01:CDS 45.0%
TTTAACCGTACGGCAATGCA+AGG - Chr7:53237609-53237628 None:intergenic 45.0%
TTTACGGGTTCTCTCTTCCA+TGG - Chr7:53236279-53236298 None:intergenic 45.0%
TTTCTCTACAAGTCTGGCGA+TGG - Chr7:53235871-53235890 None:intergenic 45.0%
! AATTGCCCTTTTCTTCCCGT+AGG - Chr7:53236334-53236353 None:intergenic 45.0%
! GCCACTTCTTTTACCGAACT+AGG - Chr7:53237115-53237134 None:intergenic 45.0%
!! TACATAGTCGGTTCGCTGTT+CGG - Chr7:53236828-53236847 None:intergenic 45.0%
!! TGGTTCCTAAAGGCATTGTG+AGG - Chr7:53235851-53235870 None:intergenic 45.0%
!!! ATAATATTATTGTTTTATAT+AGG + Chr7:53237225-53237244 MsG0780038798.01.T01:intron 5.0%
!!! TTTTTATTTTTTTAAAGATT+AGG + Chr7:53236539-53236558 MsG0780038798.01.T01:intron 5.0%
AACAAAGTCCTTCCCGGCTT+CGG - Chr7:53235811-53235830 None:intergenic 50.0%
AACCATCCCATGAGGGATCA+AGG + Chr7:53237314-53237333 MsG0780038798.01.T01:CDS 50.0%
AACCTTGATCCCTCATGGGA+TGG - Chr7:53237319-53237338 None:intergenic 50.0%
AAGTTCTGTTTGCCGAAGCC+GGG + Chr7:53235796-53235815 MsG0780038798.01.T01:CDS 50.0%
ACCAACTGTAACTGGCCCTA+TGG - Chr7:53235901-53235920 None:intergenic 50.0%
ACCATAGGGCCAGTTACAGT+TGG + Chr7:53235897-53235916 MsG0780038798.01.T01:CDS 50.0%
AGTCTGGCGATGGTTCCTAA+AGG - Chr7:53235861-53235880 None:intergenic 50.0%
CCTCACGAATTTGGACGAAC+CGG - Chr7:53236230-53236249 None:intergenic 50.0%
GGCTGCTACTACTACTCAAG+TGG + Chr7:53235728-53235747 MsG0780038798.01.T01:CDS 50.0%
GGTTCTCTCTTCCATGGGAT+TGG - Chr7:53236273-53236292 None:intergenic 50.0%
TCAACACGGGGTACAAGAGT+TGG - Chr7:53237651-53237670 None:intergenic 50.0%
TCCGGTACGTGGTACGAATT+CGG - Chr7:53236895-53236914 None:intergenic 50.0%
TCGTAATTCGTTCCGGTACG+TGG - Chr7:53236906-53236925 None:intergenic 50.0%
TGGACCACATAACCATCACC+AGG - Chr7:53237792-53237811 None:intergenic 50.0%
! TTCGCGGTACTTTTGCGAAC+CGG + Chr7:53236208-53236227 MsG0780038798.01.T01:intron 50.0%
!! AAAAGTACCGCGAACCGGTA+CGG - Chr7:53236202-53236221 None:intergenic 50.0%
!! TTCGCAAAAGTACCGCGAAC+CGG - Chr7:53236207-53236226 None:intergenic 50.0%
CCCGAATTCGTACCACGTAC+CGG + Chr7:53236891-53236910 MsG0780038798.01.T01:intron 55.0%
CCGGTACGTGGTACGAATTC+GGG - Chr7:53236894-53236913 None:intergenic 55.0%
GAAGGATCTGGGCGTGAAAG+TGG + Chr7:53236467-53236486 MsG0780038798.01.T01:intron 55.0%
GGTACGGACGAACCAATTCG+CGG - Chr7:53236186-53236205 None:intergenic 55.0%
GTGGTACGAATTCGGGTACG+CGG - Chr7:53236887-53236906 None:intergenic 55.0%
! CCGGTTCGTCCAAATTCGTG+AGG + Chr7:53236227-53236246 MsG0780038798.01.T01:intron 55.0%
!! GCGAATTGGTTCGTCCGTAC+CGG + Chr7:53236185-53236204 MsG0780038798.01.T01:intron 55.0%
TCTGTTTGCCGAAGCCGGGA+AGG + Chr7:53235800-53235819 MsG0780038798.01.T01:CDS 60.0%
!! GGTTCGTCCGTACCGGTTCG+CGG + Chr7:53236192-53236211 MsG0780038798.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 53235726 53237845 53235726 ID=MsG0780038798.01;Name=MsG0780038798.01
Chr7 mRNA 53235726 53237845 53235726 ID=MsG0780038798.01.T01;Parent=MsG0780038798.01;Name=MsG0780038798.01.T01;_AED=0.45;_eAED=0.46;_QI=0|0|0|1|1|1|4|0|344
Chr7 exon 53235726 53236083 53235726 ID=MsG0780038798.01.T01:exon:8461;Parent=MsG0780038798.01.T01
Chr7 exon 53236978 53237156 53236978 ID=MsG0780038798.01.T01:exon:8462;Parent=MsG0780038798.01.T01
Chr7 exon 53237247 53237419 53237247 ID=MsG0780038798.01.T01:exon:8463;Parent=MsG0780038798.01.T01
Chr7 exon 53237521 53237845 53237521 ID=MsG0780038798.01.T01:exon:8464;Parent=MsG0780038798.01.T01
Chr7 CDS 53235726 53236083 53235726 ID=MsG0780038798.01.T01:cds;Parent=MsG0780038798.01.T01
Chr7 CDS 53236978 53237156 53236978 ID=MsG0780038798.01.T01:cds;Parent=MsG0780038798.01.T01
Chr7 CDS 53237247 53237419 53237247 ID=MsG0780038798.01.T01:cds;Parent=MsG0780038798.01.T01
Chr7 CDS 53237521 53237845 53237521 ID=MsG0780038798.01.T01:cds;Parent=MsG0780038798.01.T01
Gene Sequence

>MsG0780038798.01.T01

ATGGCTGCTACTACTACTCAAGTGGACGAGCATGTGTCCTTGAAACTTCTTTTAAACGAAAATGGTAACAAAGTTCTGTTTGCCGAAGCCGGGAAGGACTTTGTTGATGTTCTATGTAGCTTCCTCACAATGCCTTTAGGAACCATCGCCAGACTTGTAGAGAAAGAATCTACCATAGGGCCAGTTACAGTTGGTTGTCTAAACTCACTCTATAAAAGTGTGGCAGATCTTGATGAAGGTTGTATGTCCACTGAGACAATCAAGCAAATGCTGCTACATCCAATCAACCCAATGGAAGATTATTGCAACGCTCTTAAACTCAACATTGATGACAATCAAACAACAAAGTACTTCACATTTTTCCTTAAACCTCTTCCCCAAGGATTTGTTAATGGTATACCTACTTATGTCATAACTGATGATCTGATTGTCAAGCCAAACTGTATTGACTATACAAGATTTAGTCTGTTCCAGGATTTTGGCATAAAAAACCCTAGTTCGGTAAAAGAAGTGGCTCTGAATGTCACTAAAGAAAAGGTACTTGATCTGCTAAAGTGTTCTTTGCTTTCCAAGTCAACCTTGACAGATTTGTTTCTAGAGTTGAAACCATCCCATGAGGGATCAAGGTTTATTTTTTCCGATGTTGAAATTAGTGGCAATATCCAAATCAATCTAAAGCTAGTTATAAGAAAATCTGATAACAAGGTATTCATTAATGGATTGTACAAGAGCATAGTTGATTTGGATGAAAACCAATATTTCACATCAACTGAAGCTAAGAACAGGCTTGTTGATCCTTGCATTGCCGTACGGTTAAAGTTAAGGAACCAGATATTACCAACTCTTGTACCCCGTGTTGAAGAATATTATGGTTATTTTGAAAGTTCTGCTTACACTAGTAGTATTATTCATCTTCAAATTCTCAAATCTGGAAAATATTATTATTTCAAGAACATGAATTTATCTAATGTGATTATTCCTGGTGATGGTTATGTGGTCCAGCAATGTATTTTGCTACAGATGATTTGTTTGTAG

Protein sequence

>MsG0780038798.01.T01

MAATTTQVDEHVSLKLLLNENGNKVLFAEAGKDFVDVLCSFLTMPLGTIARLVEKESTIGPVTVGCLNSLYKSVADLDEGCMSTETIKQMLLHPINPMEDYCNALKLNIDDNQTTKYFTFFLKPLPQGFVNGIPTYVITDDLIVKPNCIDYTRFSLFQDFGIKNPSSVKEVALNVTKEKVLDLLKCSLLSKSTLTDLFLELKPSHEGSRFIFSDVEISGNIQINLKLVIRKSDNKVFINGLYKSIVDLDENQYFTSTEAKNRLVDPCIAVRLKLRNQILPTLVPRVEEYYGYFESSAYTSSIIHLQILKSGKYYYFKNMNLSNVIIPGDGYVVQQCILLQMICL*