AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035573.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035573.01.T01 MTR_6g084440 93.289 447 21 2 308 746 72 517 0.0 854
MsG0680035573.01.T01 MTR_6g084440 92.841 447 21 3 308 746 72 515 0.0 846
MsG0680035573.01.T01 MTR_8g104270 57.955 440 132 15 332 752 76 481 1.92e-141 427
MsG0680035573.01.T01 MTR_4g005350 39.381 226 113 7 529 736 115 334 1.58e-35 140
MsG0680035573.01.T01 MTR_5g040600 28.870 239 131 9 534 749 597 819 9.98e-17 85.1
MsG0680035573.01.T01 MTR_7g010160 38.806 134 76 3 592 720 496 628 1.47e-15 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035573.01.T01 AT1G73850 63.571 280 75 8 488 746 273 546 2.96e-110 349
MsG0680035573.01.T01 AT1G73850 63.571 280 75 8 488 746 273 546 2.96e-110 349
MsG0680035573.01.T01 AT3G20260 39.815 216 102 8 529 722 117 326 1.04e-30 126
MsG0680035573.01.T01 AT5G39785 39.855 138 66 6 594 719 349 481 5.68e-15 79.3
MsG0680035573.01.T01 AT5G39785 39.855 138 66 6 594 719 349 481 5.68e-15 79.3
MsG0680035573.01.T01 AT5G39785 39.855 138 66 6 594 719 349 481 5.68e-15 79.3
MsG0680035573.01.T01 AT5G39785 39.855 138 66 6 594 719 349 481 6.95e-15 79.0
MsG0680035573.01.T01 AT5G39785 39.286 140 64 7 594 719 349 481 1.33e-14 78.2
MsG0680035573.01.T01 AT1G69610 34.109 129 81 3 594 720 346 472 4.94e-12 69.7
MsG0680035573.01.T01 AT1G69610 40.230 87 51 1 594 680 390 475 1.17e-11 68.6
MsG0680035573.01.T01 AT1G69610 40.230 87 51 1 594 680 391 476 1.30e-11 68.6

Find 69 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCGTAAGATTCCCATTT+TGG 0.147178 6:-108637381 None:intergenic
TCAATTATTTGTAGAGATTC+TGG 0.189000 6:+108637327 MsG0680035573.01.T01:CDS
TAACATGGGAAGCACTTAAT+TGG 0.198782 6:+108638348 MsG0680035573.01.T01:CDS
GAGAATGAACCTTATGAATT+TGG 0.221238 6:+108638479 MsG0680035573.01.T01:CDS
TCAGGGACTAGGAGCAATTT+TGG 0.222327 6:-108638542 None:intergenic
AGAAGAGAAGAAGAAGAAAA+AGG 0.248214 6:+108635416 MsG0680035573.01.T01:CDS
TGGAAGGTACCTCGGTATTC+AGG 0.253654 6:-108638560 None:intergenic
CAAGAAGAAGCTGTCCAAAA+TGG 0.263538 6:+108637367 MsG0680035573.01.T01:CDS
TTAGTAGCTGATATAGTTTA+TGG 0.270943 6:+108636342 MsG0680035573.01.T01:CDS
AGCTTCATTTCTTGTGATAA+TGG 0.291025 6:+108638855 MsG0680035573.01.T01:CDS
GATGATCAGAAGGAGAATAT+TGG 0.307291 6:+108638811 MsG0680035573.01.T01:CDS
CACTATTGGTTCAACATCTA+AGG 0.318019 6:+108637284 MsG0680035573.01.T01:CDS
GTAGCTCCAAGGTCAATTTC+AGG 0.324497 6:+108638224 MsG0680035573.01.T01:CDS
GCACCCTCCAATTCACAATA+TGG 0.344460 6:-108638305 None:intergenic
ATGATCAGAAGGAGAATATT+GGG 0.345161 6:+108638812 MsG0680035573.01.T01:CDS
GGATTGTGACTTATATCTTC+TGG 0.349354 6:-108638284 None:intergenic
ATCAACATTTGATGCTCGTT+TGG 0.350427 6:-108638390 None:intergenic
GCACAAAAGCTTCATGAAAC+TGG 0.382594 6:+108637450 MsG0680035573.01.T01:CDS
AATTGTTGTGCAATTGTTGC+TGG 0.391890 6:-108638422 None:intergenic
AAAGATGATGAAGAAATATA+TGG 0.394408 6:+108637252 MsG0680035573.01.T01:CDS
TCACAATCCATATTGTGAAT+TGG 0.401197 6:+108638298 MsG0680035573.01.T01:CDS
TGTCATTGGTCCTACACAAT+TGG 0.408052 6:+108637200 MsG0680035573.01.T01:CDS
TATGGTGATACAACCACTAT+TGG 0.409872 6:+108637270 MsG0680035573.01.T01:CDS
AAGAAATGTCATTTCTAGAA+AGG 0.415445 6:+108637421 MsG0680035573.01.T01:CDS
GTCTCAAAATCTGAAACAAT+TGG 0.415879 6:-108636537 None:intergenic
TTGTATAGGTTAACTGTGAT+AGG 0.416462 6:-108636651 None:intergenic
AAGGAAAGAAAGAAAGAAGA+AGG 0.418718 6:+108635732 MsG0680035573.01.T01:CDS
CTTAGATGTTGAACCAATAG+TGG 0.428171 6:-108637283 None:intergenic
AGAAGAAGAAGAAAGAAAGA+AGG 0.435110 6:+108635713 MsG0680035573.01.T01:CDS
TTTAAAAGACGGATTAATGT+TGG 0.441489 6:-108638982 None:intergenic
TCTTCTCTTCTTCTTCCTCT+CGG 0.445721 6:-108635886 None:intergenic
TTTAAAGAAAGTTAATCAAA+AGG 0.445739 6:+108638999 MsG0680035573.01.T01:CDS
TTTCTTGTGATAATGGAAGA+TGG 0.449843 6:+108638862 MsG0680035573.01.T01:CDS
ATTCTATTCCAATTGAAAAG+AGG 0.460919 6:+108636616 MsG0680035573.01.T01:CDS
AAGAAGAAGCTGTCCAAAAT+GGG 0.470485 6:+108637368 MsG0680035573.01.T01:CDS
AAGAAGAAGAAGAAAGAAGA+AGG 0.470818 6:+108635571 MsG0680035573.01.T01:CDS
CTCATTCTAGCATAAATCTC+TGG 0.472752 6:-108638509 None:intergenic
TTATTTCTCTCCAATTGTGT+AGG 0.473744 6:-108637210 None:intergenic
AGAAGAAGAAGAGAAGAAGA+AGG 0.476859 6:+108635630 MsG0680035573.01.T01:CDS
CATCTAAGGACTCTTCTGAT+TGG 0.477906 6:+108637298 MsG0680035573.01.T01:CDS
TTGCACAAATTTGCTTAACA+TGG 0.498853 6:+108638333 MsG0680035573.01.T01:CDS
GGAAGGTACCTCGGTATTCA+GGG 0.510315 6:-108638559 None:intergenic
TTATGCTAGAATGAGGCATA+TGG 0.512293 6:+108638517 MsG0680035573.01.T01:CDS
GGTCTCCTACCAAATTCATA+AGG 0.517370 6:-108638488 None:intergenic
GATTAACTTTCTTTAAAAGA+CGG 0.520863 6:-108638993 None:intergenic
ATTCTCCCTGAAATTGACCT+TGG 0.525426 6:-108638230 None:intergenic
TCGTAGAAATCAAAGAGGCT+TGG 0.527566 6:+108638954 MsG0680035573.01.T01:CDS
TAGCTCCAAGGTCAATTTCA+GGG 0.532390 6:+108638225 MsG0680035573.01.T01:CDS
GTAGCTGATATAGTTTATGG+TGG 0.535251 6:+108636345 MsG0680035573.01.T01:CDS
ATGAACCTTATGAATTTGGT+AGG 0.537040 6:+108638483 MsG0680035573.01.T01:CDS
CAATCCATATTGTGAATTGG+AGG 0.556516 6:+108638301 MsG0680035573.01.T01:CDS
AGAATCAGATGATGATCAGA+AGG 0.565291 6:+108638801 MsG0680035573.01.T01:intron
ATAGTAACAATAAGTCTCAA+AGG 0.565342 6:+108636388 MsG0680035573.01.T01:CDS
CAGAGATTTATGCTAGAATG+AGG 0.571884 6:+108638510 MsG0680035573.01.T01:CDS
AACATTCATGAATTTCCTCA+AGG 0.579977 6:+108638891 MsG0680035573.01.T01:CDS
AACTGTGATAGGAGGAGAAG+TGG 0.582918 6:-108636640 None:intergenic
CGAGCATCAAATGTTGATGT+TGG 0.585634 6:+108638395 MsG0680035573.01.T01:CDS
TGCACAAATTTGCTTAACAT+GGG 0.586140 6:+108638334 MsG0680035573.01.T01:CDS
TACCTCGGTATTCAGGGACT+AGG 0.587192 6:-108638553 None:intergenic
GTTTCTCTTTATCAGCCTTG+AGG 0.587313 6:-108638906 None:intergenic
TATAGGTTAACTGTGATAGG+AGG 0.592053 6:-108636648 None:intergenic
TTCTACGAAAGTAAGATGCA+AGG 0.609967 6:-108638939 None:intergenic
TACTTTCGTAGAAATCAAAG+AGG 0.610424 6:+108638949 MsG0680035573.01.T01:CDS
AATCCATATTGTGAATTGGA+GGG 0.625587 6:+108638302 MsG0680035573.01.T01:CDS
GATCTATCAAAGTAGCTCCA+AGG 0.637964 6:+108638213 MsG0680035573.01.T01:CDS
TCTTCAATGAAGCTATCTTG+AGG 0.638095 6:-108636459 None:intergenic
AAGAAGAAGAAGACGCCGAG+AGG 0.656875 6:+108635871 MsG0680035573.01.T01:CDS
TAAGATGCAAGGATCTGACA+TGG 0.678566 6:-108638928 None:intergenic
CTCCTAGTCCCTGAATACCG+AGG 0.723246 6:+108638551 MsG0680035573.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATATTGTTATTGTTA+AGG + Chr6:108638044-108638063 MsG0680035573.01.T01:intron 10.0%
!! TTTAAAGAAAGTTAATCAAA+AGG + Chr6:108638999-108639018 MsG0680035573.01.T01:CDS 15.0%
!!! TATCATATTTTAATAGAAGT+TGG - Chr6:108638583-108638602 None:intergenic 15.0%
!! AAAGATGATGAAGAAATATA+TGG + Chr6:108637252-108637271 MsG0680035573.01.T01:CDS 20.0%
!! AAATAACACTTCTATTGTTA+AGG + Chr6:108638117-108638136 MsG0680035573.01.T01:intron 20.0%
!! GCAGAAAAATATATTGATAT+TGG + Chr6:108637120-108637139 MsG0680035573.01.T01:intron 20.0%
!!! ATATTTTAATAGAAGTTGGA+AGG - Chr6:108638579-108638598 None:intergenic 20.0%
!!! ATGTGTCAATTTTATTTATG+TGG + Chr6:108636885-108636904 MsG0680035573.01.T01:intron 20.0%
!!! GATTAACTTTCTTTAAAAGA+CGG - Chr6:108638996-108639015 None:intergenic 20.0%
!!! TGATTTGACAAAATTGTTTT+TGG + Chr6:108636987-108637006 MsG0680035573.01.T01:intron 20.0%
! AAAAAGAAGAAAAGAAGAAG+AGG + Chr6:108635451-108635470 MsG0680035573.01.T01:CDS 25.0%
! AAACACGAAATAATTCAGAA+AGG + Chr6:108637814-108637833 MsG0680035573.01.T01:intron 25.0%
! ATAGTAACAATAAGTCTCAA+AGG + Chr6:108636388-108636407 MsG0680035573.01.T01:CDS 25.0%
! ATTCTATTCCAATTGAAAAG+AGG + Chr6:108636616-108636635 MsG0680035573.01.T01:CDS 25.0%
! CGTTAGATTAATTCAACAAT+AGG - Chr6:108637566-108637585 None:intergenic 25.0%
! TCAATTATTTGTAGAGATTC+TGG + Chr6:108637327-108637346 MsG0680035573.01.T01:CDS 25.0%
! TTAGTAGCTGATATAGTTTA+TGG + Chr6:108636342-108636361 MsG0680035573.01.T01:CDS 25.0%
!! AAGAAATGTCATTTCTAGAA+AGG + Chr6:108637421-108637440 MsG0680035573.01.T01:CDS 25.0%
!!! TTTAAAAGACGGATTAATGT+TGG - Chr6:108638985-108639004 None:intergenic 25.0%
AACATTCATGAATTTCCTCA+AGG + Chr6:108638891-108638910 MsG0680035573.01.T01:CDS 30.0%
AAGAAGAAGAAGAAAGAAGA+AGG + Chr6:108635571-108635590 MsG0680035573.01.T01:CDS 30.0%
AAGGAAAGAAAGAAAGAAGA+AGG + Chr6:108635732-108635751 MsG0680035573.01.T01:CDS 30.0%
AATCCATATTGTGAATTGGA+GGG + Chr6:108638302-108638321 MsG0680035573.01.T01:CDS 30.0%
AGAAGAAGAAGAAAGAAAGA+AGG + Chr6:108635713-108635732 MsG0680035573.01.T01:CDS 30.0%
AGAAGAGAAGAAGAAGAAAA+AGG + Chr6:108635416-108635435 MsG0680035573.01.T01:CDS 30.0%
AGCTTCATTTCTTGTGATAA+TGG + Chr6:108638855-108638874 MsG0680035573.01.T01:CDS 30.0%
AGTGTTTCATAGATGCTAAA+TGG + Chr6:108637082-108637101 MsG0680035573.01.T01:intron 30.0%
ATGAACCTTATGAATTTGGT+AGG + Chr6:108638483-108638502 MsG0680035573.01.T01:CDS 30.0%
ATGATCAGAAGGAGAATATT+GGG + Chr6:108638812-108638831 MsG0680035573.01.T01:CDS 30.0%
CCAATTCTCAAATGAAACTT+CGG + Chr6:108637730-108637749 MsG0680035573.01.T01:intron 30.0%
CTAACGTTCGAGATATAATA+CGG + Chr6:108637580-108637599 MsG0680035573.01.T01:intron 30.0%
GAGAATGAACCTTATGAATT+TGG + Chr6:108638479-108638498 MsG0680035573.01.T01:CDS 30.0%
GTTTGTGTATGTACTTGTAT+CGG + Chr6:108636937-108636956 MsG0680035573.01.T01:intron 30.0%
TACTTTCGTAGAAATCAAAG+AGG + Chr6:108638949-108638968 MsG0680035573.01.T01:CDS 30.0%
TCAACAATAGGAAATTTGAC+CGG - Chr6:108637554-108637573 None:intergenic 30.0%
TCACAATCCATATTGTGAAT+TGG + Chr6:108638298-108638317 MsG0680035573.01.T01:CDS 30.0%
TTGTATAGGTTAACTGTGAT+AGG - Chr6:108636654-108636673 None:intergenic 30.0%
! GTCTCAAAATCTGAAACAAT+TGG - Chr6:108636540-108636559 None:intergenic 30.0%
! TGCACAAATTTGCTTAACAT+GGG + Chr6:108638334-108638353 MsG0680035573.01.T01:CDS 30.0%
! TTATTTCTCTCCAATTGTGT+AGG - Chr6:108637213-108637232 None:intergenic 30.0%
! TTGCACAAATTTGCTTAACA+TGG + Chr6:108638333-108638352 MsG0680035573.01.T01:CDS 30.0%
! TTTTGTAGCAAAGTTGCTTA+AGG + Chr6:108637959-108637978 MsG0680035573.01.T01:intron 30.0%
!! CTAAGTCATCACTTTTGTAT+AGG - Chr6:108636668-108636687 None:intergenic 30.0%
!! TTTCTTGTGATAATGGAAGA+TGG + Chr6:108638862-108638881 MsG0680035573.01.T01:CDS 30.0%
AAGAAGAAGCTGTCCAAAAT+GGG + Chr6:108637368-108637387 MsG0680035573.01.T01:CDS 35.0%
AATTGTTGTGCAATTGTTGC+TGG - Chr6:108638425-108638444 None:intergenic 35.0%
AGAAGAAGAAGAGAAGAAGA+AGG + Chr6:108635521-108635540 MsG0680035573.01.T01:CDS 35.0%
AGAATCAGATGATGATCAGA+AGG + Chr6:108638801-108638820 MsG0680035573.01.T01:intron 35.0%
AGAGAAGAAGAAGAAGAAGA+AGG + Chr6:108635613-108635632 MsG0680035573.01.T01:CDS 35.0%
ATCAACATTTGATGCTCGTT+TGG - Chr6:108638393-108638412 None:intergenic 35.0%
CAATCCATATTGTGAATTGG+AGG + Chr6:108638301-108638320 MsG0680035573.01.T01:CDS 35.0%
CAGAGATTTATGCTAGAATG+AGG + Chr6:108638510-108638529 MsG0680035573.01.T01:CDS 35.0%
CCGAAGTTTCATTTGAGAAT+TGG - Chr6:108637733-108637752 None:intergenic 35.0%
CTCATTCTAGCATAAATCTC+TGG - Chr6:108638512-108638531 None:intergenic 35.0%
CTTAGATGTTGAACCAATAG+TGG - Chr6:108637286-108637305 None:intergenic 35.0%
GAGAAAAGAAGAAGAAGAAG+AGG + Chr6:108635964-108635983 MsG0680035573.01.T01:CDS 35.0%
GAGAGTGACAAAAACTATGA+TGG + Chr6:108636690-108636709 MsG0680035573.01.T01:CDS 35.0%
GATGATCAGAAGGAGAATAT+TGG + Chr6:108638811-108638830 MsG0680035573.01.T01:CDS 35.0%
GGATTGTGACTTATATCTTC+TGG - Chr6:108638287-108638306 None:intergenic 35.0%
GTAGCTGATATAGTTTATGG+TGG + Chr6:108636345-108636364 MsG0680035573.01.T01:CDS 35.0%
GTATCTGTGTTTCATTGTCT+CGG + Chr6:108637036-108637055 MsG0680035573.01.T01:intron 35.0%
GTTGCTTAAGGACAAAACTT+CGG + Chr6:108637971-108637990 MsG0680035573.01.T01:intron 35.0%
TATAGGTTAACTGTGATAGG+AGG - Chr6:108636651-108636670 None:intergenic 35.0%
TATGGTGATACAACCACTAT+TGG + Chr6:108637270-108637289 MsG0680035573.01.T01:CDS 35.0%
TCTTCAATGAAGCTATCTTG+AGG - Chr6:108636462-108636481 None:intergenic 35.0%
TTAATCAAACGACTGAGCTT+TGG + Chr6:108637610-108637629 MsG0680035573.01.T01:intron 35.0%
TTATGCTAGAATGAGGCATA+TGG + Chr6:108638517-108638536 MsG0680035573.01.T01:CDS 35.0%
TTCTACGAAAGTAAGATGCA+AGG - Chr6:108638942-108638961 None:intergenic 35.0%
! TATTGCCTCTCTATTTTCTC+CGG - Chr6:108637636-108637655 None:intergenic 35.0%
! TGTCGACAAGTTGAACATTA+CGG - Chr6:108637688-108637707 None:intergenic 35.0%
!! CACTATTGGTTCAACATCTA+AGG + Chr6:108637284-108637303 MsG0680035573.01.T01:CDS 35.0%
!! TAACATGGGAAGCACTTAAT+TGG + Chr6:108638348-108638367 MsG0680035573.01.T01:CDS 35.0%
!!! GATGAGAGTGTTTTTGTCAT+TGG + Chr6:108637186-108637205 MsG0680035573.01.T01:CDS 35.0%
!!! TTGAGAGTGTTTTATCTCGA+TGG + Chr6:108637773-108637792 MsG0680035573.01.T01:intron 35.0%
ATTCTCCCTGAAATTGACCT+TGG - Chr6:108638233-108638252 None:intergenic 40.0%
CAAGAAGAAGCTGTCCAAAA+TGG + Chr6:108637367-108637386 MsG0680035573.01.T01:CDS 40.0%
CATCTAAGGACTCTTCTGAT+TGG + Chr6:108637298-108637317 MsG0680035573.01.T01:CDS 40.0%
CGAGCATCAAATGTTGATGT+TGG + Chr6:108638395-108638414 MsG0680035573.01.T01:CDS 40.0%
GATCTATCAAAGTAGCTCCA+AGG + Chr6:108638213-108638232 MsG0680035573.01.T01:CDS 40.0%
GCACAAAAGCTTCATGAAAC+TGG + Chr6:108637450-108637469 MsG0680035573.01.T01:CDS 40.0%
GGTCTCCTACCAAATTCATA+AGG - Chr6:108638491-108638510 None:intergenic 40.0%
GTTTCTCTTTATCAGCCTTG+AGG - Chr6:108638909-108638928 None:intergenic 40.0%
GTTTGTGTCAGTGTTGTGTT+CGG + Chr6:108636913-108636932 MsG0680035573.01.T01:intron 40.0%
TAAGATGCAAGGATCTGACA+TGG - Chr6:108638931-108638950 None:intergenic 40.0%
TAGCTCCAAGGTCAATTTCA+GGG + Chr6:108638225-108638244 MsG0680035573.01.T01:CDS 40.0%
TCGTAGAAATCAAAGAGGCT+TGG + Chr6:108638954-108638973 MsG0680035573.01.T01:CDS 40.0%
TCTTCTCTTCTTCTTCCTCT+CGG - Chr6:108635889-108635908 None:intergenic 40.0%
TGTCATTGGTCCTACACAAT+TGG + Chr6:108637200-108637219 MsG0680035573.01.T01:CDS 40.0%
TTGAGAATTGGAGAGACAAG+AGG - Chr6:108637721-108637740 None:intergenic 40.0%
! ACTGCGTAAGATTCCCATTT+TGG - Chr6:108637384-108637403 None:intergenic 40.0%
! GAAGTGGTCCTCTTTTCAAT+TGG - Chr6:108636627-108636646 None:intergenic 40.0%
!! ATAGAAGTTGGAAGGTACCT+CGG - Chr6:108638571-108638590 None:intergenic 40.0%
AACTGTGATAGGAGGAGAAG+TGG - Chr6:108636643-108636662 None:intergenic 45.0%
GCACCCTCCAATTCACAATA+TGG - Chr6:108638308-108638327 None:intergenic 45.0%
GGAAATTTGACCGGAGATTG+AGG - Chr6:108637545-108637564 None:intergenic 45.0%
GTAGCTCCAAGGTCAATTTC+AGG + Chr6:108638224-108638243 MsG0680035573.01.T01:CDS 45.0%
GTCTTAACCCTCTGCTTCTT+GGG - Chr6:108638015-108638034 None:intergenic 45.0%
TCTTAACCCTCTGCTTCTTG+GGG - Chr6:108638014-108638033 None:intergenic 45.0%
TGTCTTAACCCTCTGCTTCT+TGG - Chr6:108638016-108638035 None:intergenic 45.0%
TTTGGCCGGAGAAAATAGAG+AGG + Chr6:108637628-108637647 MsG0680035573.01.T01:intron 45.0%
! TCAGGGACTAGGAGCAATTT+TGG - Chr6:108638545-108638564 None:intergenic 45.0%
!!! ATTTTTTAATTTTTTATTCA+TGG + Chr6:108638679-108638698 MsG0680035573.01.T01:intron 5.0%
AAGAAGAAGAAGACGCCGAG+AGG + Chr6:108635871-108635890 MsG0680035573.01.T01:CDS 50.0%
TACCTCGGTATTCAGGGACT+AGG - Chr6:108638556-108638575 None:intergenic 50.0%
! TCAAACGACTGAGCTTTGGC+CGG + Chr6:108637614-108637633 MsG0680035573.01.T01:intron 50.0%
!! GGAAGGTACCTCGGTATTCA+GGG - Chr6:108638562-108638581 None:intergenic 50.0%
!! TGGAAGGTACCTCGGTATTC+AGG - Chr6:108638563-108638582 None:intergenic 50.0%
CCTCTTCCCCAAGAAGCAGA+GGG + Chr6:108638005-108638024 MsG0680035573.01.T01:intron 55.0%
CTCCTAGTCCCTGAATACCG+AGG + Chr6:108638551-108638570 MsG0680035573.01.T01:CDS 55.0%
TCCTCTTCCCCAAGAAGCAG+AGG + Chr6:108638004-108638023 MsG0680035573.01.T01:intron 55.0%
! CTCTCGCTAGCCTCAATCTC+CGG + Chr6:108637532-108637551 MsG0680035573.01.T01:intron 55.0%
CCCTCTGCTTCTTGGGGAAG+AGG - Chr6:108638008-108638027 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 108635391 108639032 108635391 ID=MsG0680035573.01;Name=MsG0680035573.01
Chr6 mRNA 108635391 108639032 108635391 ID=MsG0680035573.01.T01;Parent=MsG0680035573.01;Name=MsG0680035573.01.T01;_AED=0.47;_eAED=0.52;_QI=0|0|0|1|1|1|4|0|755
Chr6 exon 108635391 108636711 108635391 ID=MsG0680035573.01.T01:exon:14434;Parent=MsG0680035573.01.T01
Chr6 exon 108637124 108637471 108637124 ID=MsG0680035573.01.T01:exon:14435;Parent=MsG0680035573.01.T01
Chr6 exon 108638204 108638572 108638204 ID=MsG0680035573.01.T01:exon:14436;Parent=MsG0680035573.01.T01
Chr6 exon 108638803 108639032 108638803 ID=MsG0680035573.01.T01:exon:14437;Parent=MsG0680035573.01.T01
Chr6 CDS 108635391 108636711 108635391 ID=MsG0680035573.01.T01:cds;Parent=MsG0680035573.01.T01
Chr6 CDS 108637124 108637471 108637124 ID=MsG0680035573.01.T01:cds;Parent=MsG0680035573.01.T01
Chr6 CDS 108638204 108638572 108638204 ID=MsG0680035573.01.T01:cds;Parent=MsG0680035573.01.T01
Chr6 CDS 108638803 108639032 108638803 ID=MsG0680035573.01.T01:cds;Parent=MsG0680035573.01.T01
Gene Sequence

>MsG0680035573.01.T01

AAGAAGAAAAGAGAAGAAAGAAAGAAGAAGAGAAGAAGAAGAAAAAGGAAGAAGAAGAAAAAAAAGAAGAAAAGAAGAAGAGGAAGAAGAAAAGAAGAAGAAGAAGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAAGAGAAGAAAAGAAGAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAAGAAGGAAGAAGAAGAAGAAGAAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAAGAAGGAAGAAGAAGAAGAAAGAAGAAGAAGAAAGAAGAGAAAAAGAAAGAAGAATAAGAAGAAGAAGAAGAAGAAGAAAGAAAGAAGGAAAGAAAGAAAGAAGAAGGAAGAAGAAGAAGAAGAGAAGAAGAAGAAGAAGAAGAAAGAAGAGAAGAAGAAGAAGACAGAAGAAGAAGAAGAAAAAGAAAGAAGAAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGCCGAGAGGAAGAAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAAGAGAAGAAGAAGAAAGAAGCGAGAAAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAAGAGAAGAAGAAACGAAGAAGAAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGAAGAAGAAGAGAGAAGAAGAAGAAGAAGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTCAAGAAAGTTATTGTTATGAAGATTCTATAGAGAAAGATGATTTAGTAGCTGATATAGTTTATGGTGGAGAAGCTCTTGTATTTCTTCATAGTAACAATAAGTCTCAAAGGAATCATTCTTTTTCTTTTGAAGAAGAAGAAGAAGAAGAGTTTATAACACCTCAAGATAGCTTCATTGAAGAGTTTTCTTCAGAAGAAAAATTTTCAAGTGAAAGTTTGCATGTTCATCAGAAGTCACCAATTGTTTCAGATTTTGAGACAGAAACAAATGAAACAGAAATTCAAACAGAAGAAGAAGATGCTGATTCTGTTCAAGATTCTATTCCAATTGAAAAGAGGACCACTTCTCCTCCTATCACAGTTAACCTATACAAAAGTGATGACTTAGTAGAGAGTGACAAAAACTATGATGAAAAATATATTGATATTGGAGTTGTAAAAAATGAGAAAGTGCATGAAGAAAAAATTACAAGAGATGAGAGTGTTTTTGTCATTGGTCCTACACAATTGGAGAGAAATAAGAAGTTGATTATTGAAGAAAAAGATGATGAAGAAATATATGGTGATACAACCACTATTGGTTCAACATCTAAGGACTCTTCTGATTGGAGAAGTTCAATTATTTGTAGAGATTCTGGAACTGATGATTCATCATCAAGAAGAAGCTGTCCAAAATGGGAATCTTACGCAGTTTTTCAAAAATATGATGAAGAAATGTCATTTCTAGAAAGGATTAGTGCACAAAAGCTTCATGAAACTGAATCATTGAGATCTATCAAAGTAGCTCCAAGGTCAATTTCAGGGAGAATTGTATACAAACTTTCAAGTATGAACAAAAAACCAGAAGATATAAGTCACAATCCATATTGTGAATTGGAGGGTGCATATGTTGCACAAATTTGCTTAACATGGGAAGCACTTAATTGGAACTACAAGAATTTTCAAACCAAACGAGCATCAAATGTTGATGTTGGTTGTCCAGCAACAATTGCACAACAATTTCAACAATTTCAAGTTTTGTTGCAAAGATATGTAGAGAATGAACCTTATGAATTTGGTAGGAGACCAGAGATTTATGCTAGAATGAGGCATATGGCACCAAAATTGCTCCTAGTCCCTGAATACCGAGAATCAGATGATGATCAGAAGGAGAATATTGGGTTTAACACTAAAATATCATCAGCTTCATTTCTTGTGATAATGGAAGATGGAATCAGAACATTCATGAATTTCCTCAAGGCTGATAAAGAGAAACCATGTCAGATCCTTGCATCTTACTTTCGTAGAAATCAAAGAGGCTTGGTTGATCCAACATTAATCCGTCTTTTAAAGAAAGTTAATCAAAAGGCAAGTTCCTAA

Protein sequence

>MsG0680035573.01.T01

KKKREERKKKRRRRKRKKKKKKKKRRRGRRKEEEEEKKKKKKKKKKKRRREEKKRKKKKKKKKKKEEGRRRRRRREEEEEEEEEKKKEEEEERRRRKKRKRKKNKKKKKKKKERRKERKKKEEEEEEKKKKKKKEEKKKKTEEEEEKERRRRKKKKKKKKKKKKTPRGRRREEEEEEEEEEEERREEEERSEKRRRRRGRRRRRRRRRRREEEEEEEEEEEEEEEEEEERRRRRRRRRRRREEEKKKRRRRREEEEEEEEEEEERRRREKKKKKKEEEEEEEEEEEEEEEEEEEEEEEEEEEIQESYCYEDSIEKDDLVADIVYGGEALVFLHSNNKSQRNHSFSFEEEEEEEFITPQDSFIEEFSSEEKFSSESLHVHQKSPIVSDFETETNETEIQTEEEDADSVQDSIPIEKRTTSPPITVNLYKSDDLVESDKNYDEKYIDIGVVKNEKVHEEKITRDESVFVIGPTQLERNKKLIIEEKDDEEIYGDTTTIGSTSKDSSDWRSSIICRDSGTDDSSSRRSCPKWESYAVFQKYDEEMSFLERISAQKLHETESLRSIKVAPRSISGRIVYKLSSMNKKPEDISHNPYCELEGAYVAQICLTWEALNWNYKNFQTKRASNVDVGCPATIAQQFQQFQVLLQRYVENEPYEFGRRPEIYARMRHMAPKLLLVPEYRESDDDQKENIGFNTKISSASFLVIMEDGIRTFMNFLKADKEKPCQILASYFRRNQRGLVDPTLIRLLKKVNQKASS*