Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038802.01.T01 | XP_024626694.2 | 75.277 | 271 | 39 | 1 | 25 | 267 | 189 | 459 | 1.61E-130 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038802.01.T01 | A0A072TZK3 | 74.908 | 271 | 40 | 1 | 25 | 267 | 222 | 492 | 7.68e-130 | 386 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0480023832.01 | MsG0780038802.01 | 0.802421 | 5.656555e-49 | 2.769785e-46 |
| MsG0380016553.01 | MsG0780038802.01 | 0.800324 | 1.520294e-48 | 7.058722e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038802.01.T01 | MTR_7g062280 | 74.908 | 271 | 40 | 1 | 25 | 267 | 222 | 492 | 1.95e-133 | 386 |
| MsG0780038802.01.T01 | MTR_7g062300 | 72.932 | 266 | 44 | 4 | 20 | 259 | 209 | 472 | 4.22e-122 | 357 |
| MsG0780038802.01.T01 | MTR_7g062300 | 28.829 | 222 | 119 | 9 | 69 | 254 | 12 | 230 | 3.41e-12 | 66.2 |
| MsG0780038802.01.T01 | MTR_7g063920 | 63.910 | 266 | 72 | 2 | 25 | 267 | 173 | 437 | 3.63e-106 | 315 |
| MsG0780038802.01.T01 | MTR_7g063920 | 30.303 | 198 | 109 | 6 | 69 | 254 | 11 | 191 | 1.69e-15 | 76.3 |
| MsG0780038802.01.T01 | MTR_7g063840 | 53.704 | 270 | 97 | 2 | 25 | 267 | 206 | 474 | 1.90e-85 | 263 |
| MsG0780038802.01.T01 | MTR_7g063720 | 54.741 | 232 | 92 | 3 | 49 | 267 | 2 | 233 | 1.14e-81 | 245 |
| MsG0780038802.01.T01 | MTR_7g063660 | 51.825 | 274 | 101 | 3 | 25 | 267 | 205 | 478 | 5.93e-78 | 244 |
| MsG0780038802.01.T01 | MTR_7g063660 | 31.507 | 219 | 119 | 8 | 66 | 254 | 6 | 223 | 1.51e-14 | 73.6 |
| MsG0780038802.01.T01 | MTR_7g063670 | 53.968 | 252 | 106 | 4 | 26 | 267 | 207 | 458 | 4.72e-77 | 241 |
| MsG0780038802.01.T01 | MTR_7g063880 | 51.282 | 273 | 90 | 7 | 25 | 266 | 208 | 468 | 3.48e-74 | 234 |
| MsG0780038802.01.T01 | MTR_7g063880 | 30.876 | 217 | 118 | 8 | 69 | 254 | 11 | 226 | 2.91e-12 | 66.6 |
| MsG0780038802.01.T01 | MTR_7g063900 | 49.823 | 283 | 101 | 5 | 25 | 267 | 208 | 489 | 2.09e-73 | 232 |
| MsG0780038802.01.T01 | MTR_7g063900 | 29.817 | 218 | 120 | 7 | 69 | 254 | 10 | 226 | 3.85e-15 | 75.1 |
| MsG0780038802.01.T01 | MTR_3g007740 | 53.543 | 254 | 97 | 7 | 25 | 261 | 194 | 443 | 7.38e-73 | 229 |
| MsG0780038802.01.T01 | MTR_7g063820 | 50.000 | 276 | 105 | 3 | 25 | 267 | 210 | 485 | 4.18e-72 | 229 |
| MsG0780038802.01.T01 | MTR_7g063820 | 27.803 | 223 | 124 | 5 | 67 | 254 | 8 | 228 | 3.27e-13 | 69.3 |
| MsG0780038802.01.T01 | MTR_7g063830 | 51.230 | 244 | 110 | 3 | 25 | 266 | 208 | 444 | 4.99e-72 | 228 |
| MsG0780038802.01.T01 | MTR_7g063890 | 52.837 | 282 | 92 | 7 | 25 | 266 | 224 | 504 | 4.06e-65 | 211 |
| MsG0780038802.01.T01 | MTR_7g063890 | 30.594 | 219 | 116 | 6 | 69 | 254 | 27 | 242 | 5.21e-18 | 83.6 |
| MsG0780038802.01.T01 | MTR_7g066430 | 41.639 | 305 | 126 | 7 | 14 | 266 | 194 | 498 | 6.24e-59 | 195 |
| MsG0780038802.01.T01 | MTR_7g066430 | 28.571 | 231 | 111 | 9 | 69 | 254 | 4 | 225 | 9.01e-12 | 65.1 |
| MsG0780038802.01.T01 | MTR_7g063850 | 45.038 | 262 | 96 | 7 | 48 | 266 | 32 | 288 | 3.84e-58 | 187 |
| MsG0780038802.01.T01 | MTR_7g066570 | 40.647 | 278 | 127 | 4 | 25 | 264 | 207 | 484 | 5.77e-52 | 178 |
| MsG0780038802.01.T01 | MTR_7g066570 | 31.081 | 222 | 105 | 9 | 70 | 254 | 15 | 225 | 2.71e-13 | 69.7 |
| MsG0780038802.01.T01 | MTR_7g066400 | 38.800 | 250 | 139 | 4 | 27 | 262 | 190 | 439 | 3.06e-49 | 168 |
| MsG0780038802.01.T01 | MTR_7g066410 | 38.298 | 282 | 128 | 4 | 27 | 262 | 233 | 514 | 6.91e-49 | 169 |
| MsG0780038802.01.T01 | MTR_7g066410 | 45.946 | 74 | 35 | 1 | 69 | 137 | 10 | 83 | 4.23e-13 | 69.3 |
| MsG0780038802.01.T01 | MTR_7g100420 | 42.146 | 261 | 120 | 4 | 26 | 256 | 134 | 393 | 8.79e-49 | 166 |
| MsG0780038802.01.T01 | MTR_7g066260 | 41.767 | 249 | 129 | 4 | 25 | 260 | 217 | 462 | 8.59e-48 | 166 |
| MsG0780038802.01.T01 | MTR_7g066260 | 29.778 | 225 | 115 | 6 | 69 | 254 | 15 | 235 | 1.36e-14 | 73.6 |
| MsG0780038802.01.T01 | MTR_7g012680 | 40.385 | 260 | 138 | 5 | 25 | 267 | 193 | 452 | 5.72e-47 | 162 |
| MsG0780038802.01.T01 | MTR_7g012680 | 29.358 | 218 | 102 | 6 | 69 | 254 | 14 | 211 | 1.70e-14 | 73.2 |
| MsG0780038802.01.T01 | MTR_7g066580 | 35.106 | 282 | 138 | 4 | 27 | 263 | 167 | 448 | 7.31e-43 | 151 |
| MsG0780038802.01.T01 | MTR_7g066480 | 39.431 | 246 | 105 | 6 | 25 | 261 | 212 | 422 | 9.33e-43 | 151 |
| MsG0780038802.01.T01 | MTR_7g066480 | 30.876 | 217 | 117 | 9 | 69 | 254 | 16 | 230 | 1.62e-12 | 67.4 |
| MsG0780038802.01.T01 | MTR_7g066350 | 39.271 | 247 | 137 | 4 | 25 | 262 | 209 | 451 | 2.42e-42 | 150 |
| MsG0780038802.01.T01 | MTR_7g066350 | 31.532 | 222 | 113 | 6 | 69 | 254 | 9 | 227 | 1.13e-15 | 76.6 |
| MsG0780038802.01.T01 | MTR_7g058710 | 35.231 | 281 | 144 | 4 | 25 | 267 | 204 | 484 | 3.07e-41 | 148 |
| MsG0780038802.01.T01 | MTR_7g058710 | 31.050 | 219 | 110 | 7 | 69 | 254 | 12 | 222 | 4.79e-16 | 77.8 |
| MsG0780038802.01.T01 | MTR_1g041315 | 38.158 | 228 | 128 | 4 | 27 | 244 | 227 | 451 | 8.26e-41 | 147 |
| MsG0780038802.01.T01 | MTR_7g066360 | 42.623 | 244 | 117 | 6 | 25 | 256 | 213 | 445 | 8.42e-41 | 147 |
| MsG0780038802.01.T01 | MTR_7g066360 | 38.372 | 86 | 47 | 2 | 68 | 148 | 13 | 97 | 6.62e-11 | 62.4 |
| MsG0780038802.01.T01 | MTR_7g058700 | 39.419 | 241 | 109 | 5 | 27 | 267 | 725 | 928 | 1.13e-40 | 149 |
| MsG0780038802.01.T01 | MTR_7g066490 | 38.367 | 245 | 109 | 6 | 25 | 261 | 198 | 408 | 1.22e-40 | 145 |
| MsG0780038802.01.T01 | MTR_7g066490 | 30.047 | 213 | 110 | 8 | 69 | 254 | 16 | 216 | 2.07e-13 | 69.7 |
| MsG0780038802.01.T01 | MTR_7g066340 | 36.290 | 248 | 138 | 3 | 25 | 260 | 214 | 453 | 2.26e-39 | 143 |
| MsG0780038802.01.T01 | MTR_7g066340 | 29.279 | 222 | 120 | 6 | 69 | 254 | 12 | 232 | 1.15e-15 | 76.6 |
| MsG0780038802.01.T01 | MTR_7g066680 | 34.228 | 298 | 129 | 5 | 26 | 256 | 37 | 334 | 3.26e-39 | 140 |
| MsG0780038802.01.T01 | MTR_7g066290 | 39.834 | 241 | 114 | 3 | 26 | 260 | 218 | 433 | 4.96e-39 | 141 |
| MsG0780038802.01.T01 | MTR_7g066290 | 41.176 | 85 | 44 | 2 | 69 | 148 | 15 | 98 | 1.26e-11 | 64.7 |
| MsG0780038802.01.T01 | MTR_7g066310 | 40.415 | 193 | 112 | 2 | 69 | 260 | 193 | 383 | 1.12e-38 | 139 |
| MsG0780038802.01.T01 | MTR_7g066310 | 42.353 | 85 | 43 | 2 | 69 | 148 | 7 | 90 | 1.08e-11 | 64.7 |
| MsG0780038802.01.T01 | MTR_3g065200 | 37.838 | 222 | 90 | 4 | 57 | 247 | 204 | 408 | 7.79e-34 | 127 |
| MsG0780038802.01.T01 | MTR_4g019310 | 32.616 | 279 | 150 | 5 | 25 | 267 | 221 | 497 | 1.77e-33 | 127 |
| MsG0780038802.01.T01 | MTR_7g066280 | 33.198 | 247 | 104 | 3 | 69 | 260 | 150 | 390 | 9.52e-33 | 124 |
| MsG0780038802.01.T01 | MTR_1g014060 | 39.247 | 186 | 92 | 3 | 99 | 267 | 210 | 391 | 3.63e-30 | 116 |
| MsG0780038802.01.T01 | MTR_1g014060 | 30.516 | 213 | 113 | 7 | 81 | 260 | 12 | 222 | 8.23e-16 | 76.6 |
| MsG0780038802.01.T01 | MTR_4g017830 | 29.252 | 294 | 152 | 7 | 25 | 266 | 218 | 507 | 6.35e-27 | 109 |
| MsG0780038802.01.T01 | MTR_7g063760 | 58.108 | 74 | 30 | 1 | 195 | 267 | 1 | 74 | 3.32e-23 | 90.5 |
| MsG0780038802.01.T01 | MTR_4g019340 | 32.271 | 251 | 140 | 7 | 25 | 248 | 254 | 501 | 1.40e-22 | 97.1 |
| MsG0780038802.01.T01 | MTR_4g017410 | 31.522 | 276 | 147 | 8 | 25 | 266 | 223 | 490 | 1.55e-22 | 96.7 |
| MsG0780038802.01.T01 | MTR_1g115440 | 29.911 | 224 | 118 | 5 | 69 | 254 | 11 | 233 | 3.90e-20 | 87.0 |
| MsG0780038802.01.T01 | MTR_7g066390 | 36.486 | 148 | 65 | 1 | 113 | 260 | 4 | 122 | 1.17e-19 | 83.6 |
| MsG0780038802.01.T01 | MTR_4g017470 | 27.425 | 299 | 154 | 8 | 25 | 266 | 184 | 476 | 1.38e-18 | 85.1 |
| MsG0780038802.01.T01 | MTR_2g029400 | 28.626 | 262 | 130 | 7 | 25 | 250 | 165 | 405 | 1.99e-18 | 84.3 |
| MsG0780038802.01.T01 | MTR_2g029400 | 30.769 | 208 | 113 | 6 | 69 | 267 | 14 | 199 | 8.33e-16 | 77.0 |
| MsG0780038802.01.T01 | MTR_4g019330 | 32.620 | 187 | 93 | 4 | 83 | 266 | 32 | 188 | 2.67e-16 | 75.5 |
| MsG0780038802.01.T01 | MTR_4g017610 | 28.409 | 264 | 148 | 5 | 25 | 256 | 221 | 475 | 1.32e-15 | 76.6 |
| MsG0780038802.01.T01 | MTR_7g063690 | 52.703 | 74 | 33 | 2 | 25 | 96 | 149 | 222 | 3.46e-15 | 73.6 |
| MsG0780038802.01.T01 | MTR_8g023240 | 27.046 | 281 | 136 | 11 | 25 | 254 | 221 | 483 | 2.36e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038802.01.T01 | AT5G01130 | 28.794 | 257 | 161 | 6 | 25 | 267 | 203 | 451 | 3.18e-22 | 95.5 |
| MsG0780038802.01.T01 | AT5G01140 | 26.909 | 275 | 162 | 6 | 25 | 267 | 191 | 458 | 1.98e-21 | 93.6 |
| MsG0780038802.01.T01 | AT3G09140 | 30.797 | 276 | 147 | 9 | 25 | 262 | 254 | 523 | 1.11e-20 | 91.7 |
| MsG0780038802.01.T01 | AT5G01150 | 25.725 | 276 | 171 | 6 | 25 | 266 | 211 | 486 | 8.54e-17 | 80.1 |
Find 54 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACAAGAGTATAGTTTATT+TGG | 0.170444 | 7:+53258401 | MsG0780038802.01.T01:CDS |
| GGAAGAATCGCACGGATATT+TGG | 0.236006 | 7:+53258345 | MsG0780038802.01.T01:CDS |
| CATCCGATGATGTCAAATAT+TGG | 0.288315 | 7:-53258431 | None:intergenic |
| TGTGAGCCAAACCATTTGTT+AGG | 0.313855 | 7:-53258955 | None:intergenic |
| AGTAAACCCAAAGCTGAAAT+TGG | 0.334732 | 7:-53258741 | None:intergenic |
| ATTGACTCCAATTTCAGCTT+TGG | 0.362521 | 7:+53258734 | MsG0780038802.01.T01:CDS |
| TTGACTCCAATTTCAGCTTT+GGG | 0.364093 | 7:+53258735 | MsG0780038802.01.T01:CDS |
| TGAGATATGTAACTAATTTG+AGG | 0.384268 | 7:+53258619 | MsG0780038802.01.T01:CDS |
| AAACTCCTCTTAATGATTTG+AGG | 0.390791 | 7:+53258775 | MsG0780038802.01.T01:CDS |
| TTATCTAATGTGATGATTCC+TGG | 0.396168 | 7:+53258651 | MsG0780038802.01.T01:CDS |
| TGTTCCTTGGGAAGCATCAA+TGG | 0.409256 | 7:+53258375 | MsG0780038802.01.T01:CDS |
| ATCTGCCCTAACAAATGGTT+TGG | 0.417279 | 7:+53258949 | MsG0780038802.01.T01:CDS |
| TCTGTAGCAAAATACATATC+TGG | 0.428362 | 7:-53258693 | None:intergenic |
| CAAATCTGTCAAGGTTGACT+TGG | 0.429040 | 7:-53258142 | None:intergenic |
| GCAGTGTCTTAGCATATTGA+AGG | 0.430801 | 7:+53258910 | MsG0780038802.01.T01:intron |
| AACCATCCCTTGAGAGATCA+AGG | 0.434730 | 7:+53258178 | MsG0780038802.01.T01:CDS |
| AACTCCTCTTAATGATTTGA+GGG | 0.438954 | 7:+53258776 | MsG0780038802.01.T01:CDS |
| GGTCTAATGATGACCTACTC+TGG | 0.441834 | 7:+53257331 | None:intergenic |
| ATTTGGAGGGAATTGTTCCT+TGG | 0.442429 | 7:+53258362 | MsG0780038802.01.T01:CDS |
| CCTGGTGATGGTTATGTAAA+GGG | 0.442731 | 7:+53258669 | MsG0780038802.01.T01:CDS |
| TGAACACCAGGATCAAGAAT+TGG | 0.448075 | 7:-53258516 | None:intergenic |
| ATATTACCAATTCTTGATCC+TGG | 0.456535 | 7:+53258510 | MsG0780038802.01.T01:CDS |
| TCAACATCTGCCCTAACAAA+TGG | 0.480143 | 7:+53258944 | MsG0780038802.01.T01:CDS |
| TTTGGAGGGAATTGTTCCTT+GGG | 0.486733 | 7:+53258363 | MsG0780038802.01.T01:CDS |
| TCACATGCTAACTGAAGTTA+AGG | 0.488277 | 7:+53258973 | MsG0780038802.01.T01:CDS |
| AAAGCTGAAATTGGAGTCAA+TGG | 0.488614 | 7:-53258732 | None:intergenic |
| TTTAACTGTGAGGCAATGTA+AGG | 0.492529 | 7:-53258474 | None:intergenic |
| AGAAACTCATATCATTATAG+TGG | 0.494589 | 7:-53257375 | None:intergenic |
| AACAAGGTATTGTATGCTCA+AGG | 0.512633 | 7:+53258273 | MsG0780038802.01.T01:CDS |
| TAACCAGCTTCAGAATGACT+TGG | 0.519152 | 7:-53258236 | None:intergenic |
| CATCATCGGATGCTAAGAAC+AGG | 0.519251 | 7:+53258442 | MsG0780038802.01.T01:CDS |
| AACCTTGATCTCTCAAGGGA+TGG | 0.520022 | 7:-53258180 | None:intergenic |
| AGTTGTCACTATTGGCATCA+AGG | 0.520473 | 7:+53258803 | MsG0780038802.01.T01:CDS |
| GTGAGCCAAACCATTTGTTA+GGG | 0.520580 | 7:-53258954 | None:intergenic |
| GTCTAATGATGACCTACTCT+GGG | 0.530848 | 7:+53257332 | None:intergenic |
| TATCCAAGTCATTCTGAAGC+TGG | 0.535107 | 7:+53258233 | MsG0780038802.01.T01:CDS |
| TCCTGGTGATGGTTATGTAA+AGG | 0.556342 | 7:+53258668 | MsG0780038802.01.T01:CDS |
| AAACCAATATTTGACATCAT+CGG | 0.567419 | 7:+53258428 | MsG0780038802.01.T01:CDS |
| CTCATATCATTATAGTGGAA+CGG | 0.572359 | 7:-53257370 | None:intergenic |
| CCCTTTACATAACCATCACC+AGG | 0.576971 | 7:-53258669 | None:intergenic |
| AGAATCGCACGGATATTTGG+AGG | 0.583077 | 7:+53258348 | MsG0780038802.01.T01:CDS |
| CTTTACAAAGAGATGTCAGA+GGG | 0.586629 | 7:+53257396 | MsG0780038802.01.T01:CDS |
| CTTGCTTAACTTTAACTGTG+AGG | 0.620501 | 7:-53258484 | None:intergenic |
| TAATCCATTGATGCTTCCCA+AGG | 0.622043 | 7:-53258379 | None:intergenic |
| ATCCGTGCGATTCTTCCCAA+AGG | 0.623809 | 7:-53258339 | None:intergenic |
| TTCCTTTGGGAAGAATCGCA+CGG | 0.625370 | 7:+53258337 | MsG0780038802.01.T01:CDS |
| TATAAGAAAATCTGATAACA+AGG | 0.628383 | 7:+53258257 | MsG0780038802.01.T01:CDS |
| ACAAGGTATTGTATGCTCAA+GGG | 0.641517 | 7:+53258274 | MsG0780038802.01.T01:CDS |
| TCTTTACAAAGAGATGTCAG+AGG | 0.646324 | 7:+53257395 | MsG0780038802.01.T01:CDS |
| AATGTGATGATTCCTGGTGA+TGG | 0.650008 | 7:+53258657 | MsG0780038802.01.T01:CDS |
| GAATCGCACGGATATTTGGA+GGG | 0.659768 | 7:+53258349 | MsG0780038802.01.T01:CDS |
| CTAATGATGACCTACTCTGG+GGG | 0.690716 | 7:+53257334 | None:intergenic |
| TCTAATGATGACCTACTCTG+GGG | 0.727248 | 7:+53257333 | None:intergenic |
| TGTCACTATTGGCATCAAGG+AGG | 0.742676 | 7:+53258806 | MsG0780038802.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAGAAAATCTGATAACA+AGG | + | Chr7:53258257-53258276 | MsG0780038802.01.T01:CDS | 20.0% |
| !! | TATTAATAAGAGATAAGAAG+TGG | + | Chr7:53257889-53257908 | MsG0780038802.01.T01:intron | 20.0% |
| !!! | ATACAAGAGTATAGTTTATT+TGG | + | Chr7:53258401-53258420 | MsG0780038802.01.T01:CDS | 20.0% |
| ! | AAACCAATATTTGACATCAT+CGG | + | Chr7:53258428-53258447 | MsG0780038802.01.T01:CDS | 25.0% |
| ! | ACGTAACAAGTAGATAAATT+AGG | - | Chr7:53257945-53257964 | None:intergenic | 25.0% |
| ! | AGAAAAATAAAACAGCTTGT+GGG | - | Chr7:53257679-53257698 | None:intergenic | 25.0% |
| ! | AGAAACTCATATCATTATAG+TGG | - | Chr7:53257378-53257397 | None:intergenic | 25.0% |
| ! | ATTATGTGTGTAGAAAAACA+GGG | - | Chr7:53257594-53257613 | None:intergenic | 25.0% |
| ! | CGTAACAAGTAGATAAATTA+GGG | - | Chr7:53257944-53257963 | None:intergenic | 25.0% |
| ! | TACAAGGCTTATATTTATAG+TGG | + | Chr7:53257621-53257640 | MsG0780038802.01.T01:intron | 25.0% |
| ! | TAGAATCTCTTAAAGTTGTA+TGG | + | Chr7:53258030-53258049 | MsG0780038802.01.T01:intron | 25.0% |
| ! | TGAGATATGTAACTAATTTG+AGG | + | Chr7:53258619-53258638 | MsG0780038802.01.T01:CDS | 25.0% |
| !! | AAGTTTTCTTACATTTCCTT+TGG | + | Chr7:53258323-53258342 | MsG0780038802.01.T01:CDS | 25.0% |
| !! | AGTTTTCTTACATTTCCTTT+GGG | + | Chr7:53258324-53258343 | MsG0780038802.01.T01:CDS | 25.0% |
| !! | CATTTTCAAATTCTCAAATC+TGG | + | Chr7:53258588-53258607 | MsG0780038802.01.T01:intron | 25.0% |
| !! | CTTTTACTGTTTTATAATGC+AGG | + | Chr7:53258089-53258108 | MsG0780038802.01.T01:intron | 25.0% |
| !!! | AGGGAAAGTATTTTAAAAGT+TGG | - | Chr7:53257925-53257944 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTCCAATTTTTGA+GGG | - | Chr7:53257654-53257673 | None:intergenic | 25.0% |
| AAAAAAACCTTGATCTCTCA+AGG | - | Chr7:53258188-53258207 | None:intergenic | 30.0% | |
| AAAAAACCTTGATCTCTCAA+GGG | - | Chr7:53258187-53258206 | None:intergenic | 30.0% | |
| AAACTCCTCTTAATGATTTG+AGG | + | Chr7:53258775-53258794 | MsG0780038802.01.T01:CDS | 30.0% | |
| AACTCCTCTTAATGATTTGA+GGG | + | Chr7:53258776-53258795 | MsG0780038802.01.T01:CDS | 30.0% | |
| ACACATAATCATCTGATACA+AGG | + | Chr7:53257605-53257624 | MsG0780038802.01.T01:intron | 30.0% | |
| ATATTACCAATTCTTGATCC+TGG | + | Chr7:53258510-53258529 | MsG0780038802.01.T01:CDS | 30.0% | |
| CTCAAAAATTGGAACAAAAC+AGG | + | Chr7:53257653-53257672 | MsG0780038802.01.T01:intron | 30.0% | |
| GAGAAAAATAAAACAGCTTG+TGG | - | Chr7:53257680-53257699 | None:intergenic | 30.0% | |
| GATTATGTGTGTAGAAAAAC+AGG | - | Chr7:53257595-53257614 | None:intergenic | 30.0% | |
| TCTGTAGCAAAATACATATC+TGG | - | Chr7:53258696-53258715 | None:intergenic | 30.0% | |
| TTATCTAATGTGATGATTCC+TGG | + | Chr7:53258651-53258670 | MsG0780038802.01.T01:CDS | 30.0% | |
| ! | CATTAAGAGGAGTTTTCAAA+CGG | - | Chr7:53258770-53258789 | None:intergenic | 30.0% |
| ! | CTCATATCATTATAGTGGAA+CGG | - | Chr7:53257373-53257392 | None:intergenic | 30.0% |
| ! | GTATTTTGCTACAGATGATT+TGG | + | Chr7:53258701-53258720 | MsG0780038802.01.T01:CDS | 30.0% |
| ! | TACAAAACACACACTTTTGA+AGG | - | Chr7:53257992-53258011 | None:intergenic | 30.0% |
| ! | TTTTCCCTCAAATCATTAAG+AGG | - | Chr7:53258783-53258802 | None:intergenic | 30.0% |
| !! | ACCTTGACAGATTTGTTTTT+AGG | + | Chr7:53258150-53258169 | MsG0780038802.01.T01:CDS | 30.0% |
| !! | ATAAACCCTAGTTTGTTTGT+TGG | + | Chr7:53257560-53257579 | MsG0780038802.01.T01:intron | 30.0% |
| !! | CTGTTTTGTTCCAATTTTTG+AGG | - | Chr7:53257655-53257674 | None:intergenic | 30.0% |
| !!! | CCTTGACAGATTTGTTTTTA+GGG | + | Chr7:53258151-53258170 | MsG0780038802.01.T01:CDS | 30.0% |
| AAAGCTGAAATTGGAGTCAA+TGG | - | Chr7:53258735-53258754 | None:intergenic | 35.0% | |
| ACTATTAGGATTGAGTCTCT+TGG | - | Chr7:53257479-53257498 | None:intergenic | 35.0% | |
| AGAAGCCAACAAACAAACTA+GGG | - | Chr7:53257568-53257587 | None:intergenic | 35.0% | |
| AGACAAAAGTCTCCAAAATC+AGG | + | Chr7:53257754-53257773 | MsG0780038802.01.T01:intron | 35.0% | |
| AGGGAAAAAGTTGTCACTAT+TGG | + | Chr7:53258795-53258814 | MsG0780038802.01.T01:CDS | 35.0% | |
| AGTAAACCCAAAGCTGAAAT+TGG | - | Chr7:53258744-53258763 | None:intergenic | 35.0% | |
| CATCCGATGATGTCAAATAT+TGG | - | Chr7:53258434-53258453 | None:intergenic | 35.0% | |
| CCCTAAAAACAAATCTGTCA+AGG | - | Chr7:53258154-53258173 | None:intergenic | 35.0% | |
| CTCCAAAATCAGGTCAAAAT+CGG | + | Chr7:53257764-53257783 | MsG0780038802.01.T01:intron | 35.0% | |
| CTTGCTTAACTTTAACTGTG+AGG | - | Chr7:53258487-53258506 | None:intergenic | 35.0% | |
| CTTTACAAAGAGATGTCAGA+GGG | + | Chr7:53257396-53257415 | MsG0780038802.01.T01:CDS | 35.0% | |
| GGGTTTATAGAGAATTCTCT+TGG | - | Chr7:53257548-53257567 | None:intergenic | 35.0% | |
| TAGAAGCCAACAAACAAACT+AGG | - | Chr7:53257569-53257588 | None:intergenic | 35.0% | |
| TCACATGCTAACTGAAGTTA+AGG | + | Chr7:53258973-53258992 | MsG0780038802.01.T01:CDS | 35.0% | |
| TCTTTACAAAGAGATGTCAG+AGG | + | Chr7:53257395-53257414 | MsG0780038802.01.T01:CDS | 35.0% | |
| TGCATTCTGTCTGTCAAAAT+CGG | - | Chr7:53257814-53257833 | None:intergenic | 35.0% | |
| TTGACTCCAATTTCAGCTTT+GGG | + | Chr7:53258735-53258754 | MsG0780038802.01.T01:CDS | 35.0% | |
| TTTAACTGTGAGGCAATGTA+AGG | - | Chr7:53258477-53258496 | None:intergenic | 35.0% | |
| ! | ACCTTGAACAAAGCACTATT+AGG | - | Chr7:53257493-53257512 | None:intergenic | 35.0% |
| ! | ACTTTTGTCTCTGGACAAAT+CGG | - | Chr7:53257744-53257763 | None:intergenic | 35.0% |
| ! | ATTGACTCCAATTTCAGCTT+TGG | + | Chr7:53258734-53258753 | MsG0780038802.01.T01:CDS | 35.0% |
| ! | TCCTAATAGTGCTTTGTTCA+AGG | + | Chr7:53257489-53257508 | MsG0780038802.01.T01:intron | 35.0% |
| !! | AACAAGGTATTGTATGCTCA+AGG | + | Chr7:53258273-53258292 | MsG0780038802.01.T01:CDS | 35.0% |
| !! | ACAAGGTATTGTATGCTCAA+GGG | + | Chr7:53258274-53258293 | MsG0780038802.01.T01:CDS | 35.0% |
| !! | ATTTTGGAGACTTTTGTCTC+TGG | - | Chr7:53257753-53257772 | None:intergenic | 35.0% |
| AATGTGATGATTCCTGGTGA+TGG | + | Chr7:53258657-53258676 | MsG0780038802.01.T01:CDS | 40.0% | |
| AGTTGTCACTATTGGCATCA+AGG | + | Chr7:53258803-53258822 | MsG0780038802.01.T01:CDS | 40.0% | |
| ATCTGCCCTAACAAATGGTT+TGG | + | Chr7:53258949-53258968 | MsG0780038802.01.T01:CDS | 40.0% | |
| ATTCTCTTGGCAACAACACT+AGG | - | Chr7:53257535-53257554 | None:intergenic | 40.0% | |
| ATTCTGTCTGTCAAAATCGG+TGG | - | Chr7:53257811-53257830 | None:intergenic | 40.0% | |
| ATTTGGAGGGAATTGTTCCT+TGG | + | Chr7:53258362-53258381 | MsG0780038802.01.T01:CDS | 40.0% | |
| CAAATCTGTCAAGGTTGACT+TGG | - | Chr7:53258145-53258164 | None:intergenic | 40.0% | |
| CCATACTATTCATGAACACC+AGG | - | Chr7:53258531-53258550 | None:intergenic | 40.0% | |
| CCTGGTGTTCATGAATAGTA+TGG | + | Chr7:53258528-53258547 | MsG0780038802.01.T01:intron | 40.0% | |
| CTGAGACTTTGGGTAGAATT+AGG | - | Chr7:53257443-53257462 | None:intergenic | 40.0% | |
| GACACTGCAACAAGACAATA+AGG | - | Chr7:53258898-53258917 | None:intergenic | 40.0% | |
| GCAGTGTCTTAGCATATTGA+AGG | + | Chr7:53258910-53258929 | MsG0780038802.01.T01:intron | 40.0% | |
| TAACCAGCTTCAGAATGACT+TGG | - | Chr7:53258239-53258258 | None:intergenic | 40.0% | |
| TAATCCATTGATGCTTCCCA+AGG | - | Chr7:53258382-53258401 | None:intergenic | 40.0% | |
| TCAACATCTGCCCTAACAAA+TGG | + | Chr7:53258944-53258963 | MsG0780038802.01.T01:CDS | 40.0% | |
| TGAACACCAGGATCAAGAAT+TGG | - | Chr7:53258519-53258538 | None:intergenic | 40.0% | |
| TGTGAGCCAAACCATTTGTT+AGG | - | Chr7:53258958-53258977 | None:intergenic | 40.0% | |
| TTCTCTTGGCAACAACACTA+GGG | - | Chr7:53257534-53257553 | None:intergenic | 40.0% | |
| TTTGGAGGGAATTGTTCCTT+GGG | + | Chr7:53258363-53258382 | MsG0780038802.01.T01:CDS | 40.0% | |
| ! | GTGAGCCAAACCATTTGTTA+GGG | - | Chr7:53258957-53258976 | None:intergenic | 40.0% |
| !! | CCTGGTGATGGTTATGTAAA+GGG | + | Chr7:53258669-53258688 | MsG0780038802.01.T01:CDS | 40.0% |
| !! | GGAAAGCATCCCTCAAAAAT+TGG | + | Chr7:53257642-53257661 | MsG0780038802.01.T01:intron | 40.0% |
| !! | TATCCAAGTCATTCTGAAGC+TGG | + | Chr7:53258233-53258252 | MsG0780038802.01.T01:CDS | 40.0% |
| !! | TCCTGGTGATGGTTATGTAA+AGG | + | Chr7:53258668-53258687 | MsG0780038802.01.T01:CDS | 40.0% |
| AACCATCCCTTGAGAGATCA+AGG | + | Chr7:53258178-53258197 | MsG0780038802.01.T01:CDS | 45.0% | |
| AACCTTGATCTCTCAAGGGA+TGG | - | Chr7:53258183-53258202 | None:intergenic | 45.0% | |
| AGAATCGCACGGATATTTGG+AGG | + | Chr7:53258348-53258367 | MsG0780038802.01.T01:CDS | 45.0% | |
| AGGATTGAGTCTCTTGGTCA+CGG | - | Chr7:53257473-53257492 | None:intergenic | 45.0% | |
| CATCATCGGATGCTAAGAAC+AGG | + | Chr7:53258442-53258461 | MsG0780038802.01.T01:CDS | 45.0% | |
| CCCTTTACATAACCATCACC+AGG | - | Chr7:53258672-53258691 | None:intergenic | 45.0% | |
| GAATCGCACGGATATTTGGA+GGG | + | Chr7:53258349-53258368 | MsG0780038802.01.T01:CDS | 45.0% | |
| GGAAGAATCGCACGGATATT+TGG | + | Chr7:53258345-53258364 | MsG0780038802.01.T01:CDS | 45.0% | |
| TGTCACTATTGGCATCAAGG+AGG | + | Chr7:53258806-53258825 | MsG0780038802.01.T01:CDS | 45.0% | |
| TTGGCAACAACACTAGGGTT+GGG | - | Chr7:53257529-53257548 | None:intergenic | 45.0% | |
| ! | TTCCTTTGGGAAGAATCGCA+CGG | + | Chr7:53258337-53258356 | MsG0780038802.01.T01:CDS | 45.0% |
| !! | GGCCGATTTTGACCTGATTT+TGG | - | Chr7:53257769-53257788 | None:intergenic | 45.0% |
| !! | TGTTCCTTGGGAAGCATCAA+TGG | + | Chr7:53258375-53258394 | MsG0780038802.01.T01:CDS | 45.0% |
| ATCCGTGCGATTCTTCCCAA+AGG | - | Chr7:53258342-53258361 | None:intergenic | 50.0% | |
| CTTGGCAACAACACTAGGGT+TGG | - | Chr7:53257530-53257549 | None:intergenic | 50.0% | |
| GGACAAATCGGTAGCCGATT+TGG | - | Chr7:53257732-53257751 | None:intergenic | 50.0% | |
| GGATTGAGTCTCTTGGTCAC+GGG | - | Chr7:53257472-53257491 | None:intergenic | 50.0% | |
| TTTCTCCTCCTGCGCGAAAT+CGG | + | Chr7:53257694-53257713 | MsG0780038802.01.T01:intron | 50.0% | |
| ! | GGCCACCGATTGGTACAAAT+CGG | + | Chr7:53257785-53257804 | MsG0780038802.01.T01:intron | 50.0% |
| !! | AAATCGGTAGCCGATTTGGC+AGG | - | Chr7:53257728-53257747 | None:intergenic | 50.0% |
| !! | GGTGGCCGATTTGTACCAAT+CGG | - | Chr7:53257793-53257812 | None:intergenic | 50.0% |
| ACGGGAAGAGGCTGAGACTT+TGG | - | Chr7:53257454-53257473 | None:intergenic | 55.0% | |
| AGTCTCTTGGTCACGGGAAG+AGG | - | Chr7:53257466-53257485 | None:intergenic | 55.0% | |
| CGGGAAGAGGCTGAGACTTT+GGG | - | Chr7:53257453-53257472 | None:intergenic | 55.0% | |
| GGTCAAAATCGGCCACCGAT+TGG | + | Chr7:53257775-53257794 | MsG0780038802.01.T01:intron | 55.0% | |
| !! | GGCCGATTTGTACCAATCGG+TGG | - | Chr7:53257790-53257809 | None:intergenic | 55.0% |
| !! | GGTAGCCGATTTGGCAGGTT+CGG | - | Chr7:53257723-53257742 | None:intergenic | 55.0% |
| GGCCACCGAACCTGCCAAAT+CGG | + | Chr7:53257715-53257734 | MsG0780038802.01.T01:intron | 60.0% | |
| !! | AGCCGATTTGGCAGGTTCGG+TGG | - | Chr7:53257720-53257739 | None:intergenic | 60.0% |
| GCTGCTCTCTCCCCCAGAGT+AGG | - | Chr7:53257347-53257366 | None:intergenic | 65.0% | |
| ! | TTCGGTGGCCGATTTCGCGC+AGG | - | Chr7:53257705-53257724 | None:intergenic | 65.0% |
| ! | GGTGGCCGATTTCGCGCAGG+AGG | - | Chr7:53257702-53257721 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 53257340 | 53259006 | 53257340 | ID=MsG0780038802.01;Name=MsG0780038802.01 |
| Chr7 | mRNA | 53257340 | 53259006 | 53257340 | ID=MsG0780038802.01.T01;Parent=MsG0780038802.01;Name=MsG0780038802.01.T01;_AED=0.51;_eAED=0.51;_QI=0|0|0|0.75|1|1|4|0|267 |
| Chr7 | exon | 53257340 | 53257417 | 53257340 | ID=MsG0780038802.01.T01:exon:8472;Parent=MsG0780038802.01.T01 |
| Chr7 | exon | 53258111 | 53258531 | 53258111 | ID=MsG0780038802.01.T01:exon:8473;Parent=MsG0780038802.01.T01 |
| Chr7 | exon | 53258616 | 53258827 | 53258616 | ID=MsG0780038802.01.T01:exon:8474;Parent=MsG0780038802.01.T01 |
| Chr7 | exon | 53258914 | 53259006 | 53258914 | ID=MsG0780038802.01.T01:exon:8475;Parent=MsG0780038802.01.T01 |
| Chr7 | CDS | 53257340 | 53257417 | 53257340 | ID=MsG0780038802.01.T01:cds;Parent=MsG0780038802.01.T01 |
| Chr7 | CDS | 53258111 | 53258531 | 53258111 | ID=MsG0780038802.01.T01:cds;Parent=MsG0780038802.01.T01 |
| Chr7 | CDS | 53258616 | 53258827 | 53258616 | ID=MsG0780038802.01.T01:cds;Parent=MsG0780038802.01.T01 |
| Chr7 | CDS | 53258914 | 53259006 | 53258914 | ID=MsG0780038802.01.T01:cds;Parent=MsG0780038802.01.T01 |
| Gene Sequence |
| Protein sequence |
