AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007044.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007044.01.T01 MTR_2g436510 54.390 410 75 7 15 377 136 480 1.08e-140 409
MsG0280007044.01.T01 MTR_2g019400 60.745 349 34 5 53 374 1 273 6.09e-133 382
MsG0280007044.01.T01 MTR_4g105700 28.358 201 87 6 61 254 29 179 1.78e-13 72.4
MsG0280007044.01.T01 MTR_1g097140 25.322 233 131 4 41 255 197 404 8.97e-13 69.7
MsG0280007044.01.T01 MTR_1g072140 22.222 225 125 5 36 260 14 188 2.20e-12 67.8
MsG0280007044.01.T01 MTR_4g119620 21.250 240 144 6 35 252 105 321 3.21e-12 67.4
MsG0280007044.01.T01 MTR_3g045130 24.402 209 108 4 48 255 354 513 2.58e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007044.01.T01 AT4G15900 49.881 421 99 7 4 377 131 486 4.92e-134 392
MsG0280007044.01.T01 AT3G16650 49.148 411 94 9 15 377 136 479 6.78e-124 366
MsG0280007044.01.T01 AT1G11160 23.894 226 121 5 40 263 4 180 4.35e-14 74.7
MsG0280007044.01.T01 AT1G11160 23.894 226 121 5 40 263 4 180 4.54e-14 74.3
MsG0280007044.01.T01 AT1G61210 23.810 231 122 6 40 268 4 182 4.65e-14 74.7
MsG0280007044.01.T01 AT1G61210 23.810 231 122 6 40 268 4 182 4.66e-14 74.7
MsG0280007044.01.T01 AT1G11160 23.894 226 121 5 40 263 4 180 4.71e-14 74.3
MsG0280007044.01.T01 AT1G61210 23.810 231 122 6 40 268 4 182 5.54e-13 71.2
MsG0280007044.01.T01 AT2G41500 23.684 228 124 4 47 252 336 535 2.65e-12 68.6
MsG0280007044.01.T01 AT2G41500 23.684 228 124 4 47 252 336 535 2.65e-12 68.6
MsG0280007044.01.T01 AT5G16750 31.387 137 71 3 124 258 64 179 3.55e-12 68.6
MsG0280007044.01.T01 AT5G67320 27.778 144 85 2 47 190 445 569 1.19e-11 66.6
MsG0280007044.01.T01 AT3G21540 30.986 142 70 3 48 189 580 693 1.43e-11 66.6
MsG0280007044.01.T01 AT1G11160 24.638 138 83 1 126 263 22 138 3.10e-11 65.9
MsG0280007044.01.T01 AT1G62020 23.113 212 129 3 49 254 50 233 3.49e-11 65.5
MsG0280007044.01.T01 AT1G79990 26.066 211 105 5 45 252 94 256 4.37e-11 65.1
MsG0280007044.01.T01 AT1G79990 26.066 211 105 5 45 252 94 256 4.63e-11 65.1

Find 75 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTTAAGTGGATGTGTTTC+TGG 0.188469 2:+9850199 None:intergenic
CTCCATGGTGCATGCCATTC+AGG 0.189233 2:+9855048 None:intergenic
CACCTTTATGTTGGTCAAAT+TGG 0.230646 2:-9856045 MsG0280007044.01.T01:intron
TGTTGTAGTTTCTATATTAC+AGG 0.253510 2:-9855122 MsG0280007044.01.T01:intron
CCGAACAGACAGACTTTCTA+TGG 0.258236 2:+9852791 None:intergenic
TTTCTCAACATTTGCTTCAA+TGG 0.259581 2:-9855097 MsG0280007044.01.T01:CDS
GTTCTCATGATTCTACAATT+AGG 0.265500 2:-9852976 MsG0280007044.01.T01:CDS
TTGAATCGATGAATGTTATT+AGG 0.282860 2:+9850169 None:intergenic
TGGAAAGCATGGCAAGTAAT+TGG 0.325118 2:-9855077 MsG0280007044.01.T01:CDS
AGTACAAAACCATGTATTAC+TGG 0.339269 2:+9854540 None:intergenic
TTCTGCAGATCGAACTATTA+AGG 0.347597 2:-9854515 MsG0280007044.01.T01:intron
GACCAATTTGACCAACATAA+AGG 0.352827 2:+9856043 None:intergenic
CTATCAGCTCTTTGTTTATC+CGG 0.362915 2:-9853232 MsG0280007044.01.T01:CDS
CTTCCTTCTTACAGGTTCAA+TGG 0.364481 2:-9850332 MsG0280007044.01.T01:intron
TAGGTTATTAGTTCTTATAT+TGG 0.365706 2:-9853523 MsG0280007044.01.T01:CDS
CCATAGAAAGTCTGTCTGTT+CGG 0.371614 2:-9852791 MsG0280007044.01.T01:CDS
CGTATGATTTCGCGGGTACA+AGG 0.382136 2:-9850282 MsG0280007044.01.T01:CDS
TCTTAGTAGTGTTTATTGCT+TGG 0.388680 2:-9853497 MsG0280007044.01.T01:CDS
ACAATAAATTACCATATCTA+AGG 0.392311 2:+9852945 None:intergenic
ATGATAAGCAAGTTAAATGT+TGG 0.393235 2:-9853931 MsG0280007044.01.T01:CDS
CATAGAAAGTCTGTCTGTTC+GGG 0.394021 2:-9852790 MsG0280007044.01.T01:CDS
GTTCTAAAGCACACATTAGT+AGG 0.430024 2:-9854103 MsG0280007044.01.T01:CDS
ACGATTCTGTTTGCCAGGTA+TGG 0.435417 2:-9853435 MsG0280007044.01.T01:CDS
TAAATGTGATCACTATGTTT+TGG 0.441684 2:-9853327 MsG0280007044.01.T01:CDS
AACAAGTGTGCTTTCTCTAC+AGG 0.451678 2:-9853998 MsG0280007044.01.T01:CDS
CAGTTGATCCCAGTAATACA+TGG 0.456752 2:-9854549 MsG0280007044.01.T01:CDS
CCCACCTTGTAGTTTCTCCA+TGG 0.466460 2:+9855033 None:intergenic
ATTTGGGCAGATATGGGACT+TGG 0.477361 2:-9854134 MsG0280007044.01.T01:intron
TTAGGAGGTATGAAGTTAAG+TGG 0.479854 2:+9850187 None:intergenic
TGCAATGGCTGTCAATGATA+AGG 0.480071 2:-9852164 MsG0280007044.01.T01:CDS
TTCCTGTAGGTTATCATCAG+TGG 0.480628 2:-9854598 MsG0280007044.01.T01:intron
TGTCAATGATAAGGGTGTTA+TGG 0.491967 2:-9852155 MsG0280007044.01.T01:CDS
CTCTTTGTTTATCCGGCCAA+CGG 0.493923 2:-9853225 MsG0280007044.01.T01:intron
GTATAATTATTTATTAGTGA+TGG 0.494321 2:-9854047 MsG0280007044.01.T01:CDS
ATGATTCTACAATTAGGATG+TGG 0.496754 2:-9852970 MsG0280007044.01.T01:CDS
AGGATGTGGGACCTTAGATA+TGG 0.503239 2:-9852956 MsG0280007044.01.T01:CDS
AGCAATAAACACTACTAAGA+TGG 0.508743 2:+9853500 None:intergenic
AGTCACTAAAATGTCAAATG+TGG 0.510012 2:+9853465 None:intergenic
GAGAACAAGTGAACACTTGA+GGG 0.511004 2:+9852993 None:intergenic
GTTATCATCAGTGGTCACTT+AGG 0.512067 2:-9854589 MsG0280007044.01.T01:CDS
TGCTTTAACGTATGATTTCG+CGG 0.513752 2:-9850290 MsG0280007044.01.T01:CDS
AGGACACGATTCTGTTTGCC+AGG 0.513910 2:-9853440 MsG0280007044.01.T01:CDS
TGATAAGCAAGTTAAATGTT+GGG 0.517363 2:-9853930 MsG0280007044.01.T01:CDS
CATCAGTGGTCACTTAGGAT+TGG 0.520106 2:-9854584 MsG0280007044.01.T01:CDS
GGTGCATGCCATTCAGGTTG+TGG 0.523538 2:+9855054 None:intergenic
ATTTGCTTCAATGGAAAGCA+TGG 0.530335 2:-9855088 MsG0280007044.01.T01:CDS
GGTCACAGTGATCAAGTAAG+AGG 0.532772 2:-9854082 MsG0280007044.01.T01:CDS
AAGTCTGTCTGTTCGGGCAA+TGG 0.534706 2:-9852784 MsG0280007044.01.T01:CDS
AACACATACTCCGTAGGATG+TGG 0.538495 2:+9852759 None:intergenic
GTAATTGGCCACAACCTGAA+TGG 0.543088 2:-9855062 MsG0280007044.01.T01:CDS
GCAATGGCTGTCAATGATAA+GGG 0.543600 2:-9852163 MsG0280007044.01.T01:CDS
GGCAATGGTTCCACATCCTA+CGG 0.548109 2:-9852769 MsG0280007044.01.T01:CDS
AATCGATGAATGTTATTAGG+AGG 0.550155 2:+9850172 None:intergenic
AGAATCTGCATACCGTTGGC+CGG 0.553012 2:+9853213 None:intergenic
GTCACTAAAATGTCAAATGT+GGG 0.554711 2:+9853466 None:intergenic
TATCAAAACAAGTCCATACC+TGG 0.560102 2:+9853422 None:intergenic
GGACATACGTAGTGAAATGC+CGG 0.563639 2:-9853282 MsG0280007044.01.T01:CDS
TTGGGATCTTGAACAAAATG+AGG 0.566000 2:-9853912 MsG0280007044.01.T01:intron
GATAAGGGTGTTATGGTGAC+CGG 0.567752 2:-9852148 MsG0280007044.01.T01:CDS
GCTTTAACGTATGATTTCGC+GGG 0.573154 2:-9850289 MsG0280007044.01.T01:CDS
GGTTCAATGGACAATGAGGC+TGG 0.585840 2:-9850319 MsG0280007044.01.T01:CDS
TGAGAACAAGTGAACACTTG+AGG 0.590077 2:+9852992 None:intergenic
TACAGGTTCAATGGACAATG+AGG 0.602714 2:-9850323 MsG0280007044.01.T01:intron
TGATTCTACAATTAGGATGT+GGG 0.603799 2:-9852969 MsG0280007044.01.T01:CDS
GAAAACTACTGTCAATGCAA+TGG 0.612952 2:-9852179 MsG0280007044.01.T01:CDS
TATGCATGACACCTTTATGT+TGG 0.615214 2:-9856054 MsG0280007044.01.T01:CDS
TGCACCATGGAGAAACTACA+AGG 0.625680 2:-9855037 MsG0280007044.01.T01:intron
TATGTTTGTTGCTAATAACA+AGG 0.635388 2:+9853975 None:intergenic
AACCTGAATGGCATGCACCA+TGG 0.635403 2:-9855050 MsG0280007044.01.T01:CDS
AAGTGGATGTGTTTCTGGAG+TGG 0.637045 2:+9850204 None:intergenic
GTACAAAACCATGTATTACT+GGG 0.647070 2:+9854541 None:intergenic
CAGATATGGGACTTGGCAAG+TGG 0.647749 2:-9854127 MsG0280007044.01.T01:CDS
CAGTGATCAAGTAAGAGGTG+AGG 0.648278 2:-9854077 MsG0280007044.01.T01:CDS
ATACAGAACACATACTCCGT+AGG 0.663277 2:+9852753 None:intergenic
AAGGGTGTTATGGTGACCGG+AGG 0.686554 2:-9852145 MsG0280007044.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATATTACAATTTAAA+AGG + Chr2:9851544-9851563 None:intergenic 10.0%
!! TAAAAAAATCTGAAAAAATA+CGG - Chr2:9854525-9854544 MsG0280007044.01.T01:CDS 10.0%
!! TGAAAATAATTGAAAAAATA+CGG - Chr2:9854474-9854493 MsG0280007044.01.T01:intron 10.0%
!! TTAATGAAAAATAAAAATTC+TGG + Chr2:9855067-9855086 None:intergenic 10.0%
!!! AATTTTCATTAGTATTTTTT+CGG + Chr2:9854864-9854883 None:intergenic 10.0%
!! AAATAGTTTATTAACTTATC+AGG - Chr2:9851977-9851996 MsG0280007044.01.T01:intron 15.0%
!! AAATTATCCTTATTAACTAT+TGG - Chr2:9852483-9852502 MsG0280007044.01.T01:intron 15.0%
!! AACATAATATTCGAAATAAT+TGG - Chr2:9851448-9851467 MsG0280007044.01.T01:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG + Chr2:9852484-9852503 None:intergenic 15.0%
!! GGAAAAAAATTTAAAAATTC+TGG - Chr2:9854495-9854514 MsG0280007044.01.T01:intron 15.0%
!! GTATAATTATTTATTAGTGA+TGG - Chr2:9852150-9852169 MsG0280007044.01.T01:CDS 15.0%
!! GTTCTTATTCAAAAAAAAAA+TGG - Chr2:9855653-9855672 MsG0280007044.01.T01:intron 15.0%
!! TCTGAAAAAAATTAAAATTC+TGG + Chr2:9855134-9855153 None:intergenic 15.0%
!! TTAAAAATTTCGAAAATATC+TGG - Chr2:9854635-9854654 MsG0280007044.01.T01:intron 15.0%
!!! AAAAGAGTTATTTTTTTTAG+GGG - Chr2:9855494-9855513 MsG0280007044.01.T01:intron 15.0%
!!! AATTCTCATTAGTATTTTTT+CGG - Chr2:9854735-9854754 MsG0280007044.01.T01:intron 15.0%
!!! AGAAAAGAGTTATTTTTTTT+AGG - Chr2:9855492-9855511 MsG0280007044.01.T01:intron 15.0%
!!! ATTGAAAATTCTAGAAAATA+CGG - Chr2:9854693-9854712 MsG0280007044.01.T01:intron 15.0%
!!! ATTTCTTAATCTAATTTTTG+TGG + Chr2:9850780-9850799 None:intergenic 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG + Chr2:9854863-9854882 None:intergenic 15.0%
!!! ATTTTCATTAGTATTTTTTC+GGG + Chr2:9854863-9854882 None:intergenic 15.0%
!!! ATTTTTGTGTATTTATAAAC+CGG - Chr2:9854760-9854779 MsG0280007044.01.T01:intron 15.0%
!!! GAAAAGAGTTATTTTTTTTA+GGG - Chr2:9855493-9855512 MsG0280007044.01.T01:intron 15.0%
!!! TAAAAAAAATAACTCTTTTC+TGG + Chr2:9855493-9855512 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - Chr2:9852507-9852526 MsG0280007044.01.T01:intron 15.0%
!!! TTGATAATATATTGAGATTT+AGG - Chr2:9852803-9852822 MsG0280007044.01.T01:CDS 15.0%
!! AAAAAAAAAATGGTAGTATG+TGG - Chr2:9855663-9855682 MsG0280007044.01.T01:intron 20.0%
!! AAAAAAGCTATGCTAATAAT+CGG - Chr2:9850277-9850296 MsG0280007044.01.T01:CDS 20.0%
!! AAACTAACCAATAGTTAATA+AGG + Chr2:9852493-9852512 None:intergenic 20.0%
!! AATAAAAAAATTTACACACG+TGG - Chr2:9855393-9855412 MsG0280007044.01.T01:intron 20.0%
!! AATAATTAAGAGAAAGAGAA+TGG - Chr2:9852450-9852469 MsG0280007044.01.T01:intron 20.0%
!! ACAAAAAATTATGTGTATTC+CGG + Chr2:9854782-9854801 None:intergenic 20.0%
!! ACAATAAATTACCATATCTA+AGG + Chr2:9853255-9853274 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - Chr2:9852570-9852589 MsG0280007044.01.T01:intron 20.0%
!! AGTTGTTCAAAATTTGAATA+GGG + Chr2:9851914-9851933 None:intergenic 20.0%
!! ATATCTGGAAAATTTGAAAA+CGG - Chr2:9854650-9854669 MsG0280007044.01.T01:intron 20.0%
!! CGGAAAAAAAATTAAAATTC+AGG - Chr2:9854545-9854564 MsG0280007044.01.T01:CDS 20.0%
!! CTTAGATTAAATTGTAAAGA+AGG + Chr2:9851819-9851838 None:intergenic 20.0%
!! GAATACATAATGAAAATTTC+CGG - Chr2:9854841-9854860 MsG0280007044.01.T01:intron 20.0%
!! TAAAAAAAATAACTCTTTCC+AGG - Chr2:9854194-9854213 MsG0280007044.01.T01:intron 20.0%
!! TACAAAAAATATGTGTATTC+CGG + Chr2:9854816-9854835 None:intergenic 20.0%
!! TAGTTGTTCAAAATTTGAAT+AGG + Chr2:9851915-9851934 None:intergenic 20.0%
!! TTATTAAATCCCACAATAAT+GGG + Chr2:9850651-9850670 None:intergenic 20.0%
!! TTGTAGTAAGTTGTTTATTT+GGG - Chr2:9852047-9852066 MsG0280007044.01.T01:intron 20.0%
!! TTTATTAAATCCCACAATAA+TGG + Chr2:9850652-9850671 None:intergenic 20.0%
!! TTTGTAGTAAGTTGTTTATT+TGG - Chr2:9852046-9852065 MsG0280007044.01.T01:intron 20.0%
!!! AAAGAGTTATTTTTTTTAGG+GGG - Chr2:9855495-9855514 MsG0280007044.01.T01:intron 20.0%
!!! AGACCTAAATTTAAAATTGA+GGG - Chr2:9850692-9850711 MsG0280007044.01.T01:intron 20.0%
!!! ATTCTCATTAGTATTTTTTC+GGG - Chr2:9854736-9854755 MsG0280007044.01.T01:intron 20.0%
!!! ATTGTTACTTATAGAATGAT+TGG - Chr2:9853471-9853490 MsG0280007044.01.T01:CDS 20.0%
!!! CACATTTATTTTCTACATAT+TGG + Chr2:9852858-9852877 None:intergenic 20.0%
!!! GAAAGAGTTATTTTTTTTAG+GGG + Chr2:9854193-9854212 None:intergenic 20.0%
!!! GAAATTTTCATTATGTATTC+CGG + Chr2:9854841-9854860 None:intergenic 20.0%
!!! GATACTAAATTTTCATGTTT+GGG - Chr2:9852894-9852913 MsG0280007044.01.T01:intron 20.0%
!!! GGAAAGAGTTATTTTTTTTA+GGG + Chr2:9854194-9854213 None:intergenic 20.0%
!!! TACACATATTTTTTGTAAAC+CGG - Chr2:9854819-9854838 MsG0280007044.01.T01:intron 20.0%
!!! TAGACCTAAATTTAAAATTG+AGG - Chr2:9850691-9850710 MsG0280007044.01.T01:intron 20.0%
!!! TAGGTTATTAGTTCTTATAT+TGG - Chr2:9852674-9852693 MsG0280007044.01.T01:intron 20.0%
!!! TGATACTAAATTTTCATGTT+TGG - Chr2:9852893-9852912 MsG0280007044.01.T01:intron 20.0%
!!! TGGAAAGAGTTATTTTTTTT+AGG + Chr2:9854195-9854214 None:intergenic 20.0%
!!! TTACCCTCAATTTTAAATTT+AGG + Chr2:9850698-9850717 None:intergenic 20.0%
!!! TTTAAAATTGAGGGTAATTT+AGG - Chr2:9850701-9850720 MsG0280007044.01.T01:intron 20.0%
!!! TTTTTCTATTCTACCATATA+CGG + Chr2:9853716-9853735 None:intergenic 20.0%
!!! TTTTTTGTGTATTTACAAAC+CGG - Chr2:9854794-9854813 MsG0280007044.01.T01:intron 20.0%
! AAAATTTGAAAACGGAATTC+TGG - Chr2:9854658-9854677 MsG0280007044.01.T01:intron 25.0%
! AACTAAGTGAATTTCTGTTT+AGG - Chr2:9854086-9854105 MsG0280007044.01.T01:CDS 25.0%
! ACTAAGTGAATTTCTGTTTA+GGG - Chr2:9854087-9854106 MsG0280007044.01.T01:CDS 25.0%
! ACTATTTAATGATAGATGAG+TGG - Chr2:9851212-9851231 MsG0280007044.01.T01:intron 25.0%
! AGGTTTATAAAGCAAGTTAT+GGG + Chr2:9850982-9851001 None:intergenic 25.0%
! AGTAATATAACGTGAATTAG+TGG + Chr2:9852374-9852393 None:intergenic 25.0%
! ATGATAAGCAAGTTAAATGT+TGG - Chr2:9852266-9852285 MsG0280007044.01.T01:intron 25.0%
! ATGGTAGAATAGAAAAATGA+AGG - Chr2:9853719-9853738 MsG0280007044.01.T01:intron 25.0%
! CAAATATCAATTTGAAAGCT+TGG - Chr2:9851412-9851431 MsG0280007044.01.T01:intron 25.0%
! CAAATGCTAGAAAATAGAAA+AGG - Chr2:9853941-9853960 MsG0280007044.01.T01:CDS 25.0%
! CAAATTTCAGCATTCAAATT+TGG - Chr2:9853088-9853107 MsG0280007044.01.T01:intron 25.0%
! GATTGTTAATCTTGTGTATA+CGG + Chr2:9855800-9855819 None:intergenic 25.0%
! GCTGTTAATATTTCATGTTT+GGG + Chr2:9850354-9850373 None:intergenic 25.0%
! GTTCAATTGTTTGATATTGT+TGG + Chr2:9855716-9855735 None:intergenic 25.0%
! TAAACACTATAAATGAAGCT+AGG - Chr2:9851947-9851966 MsG0280007044.01.T01:intron 25.0%
! TAACAAAAGTGAGCATAATA+AGG + Chr2:9853178-9853197 None:intergenic 25.0%
! TAGAAGGATTAAACTGATAA+AGG - Chr2:9850227-9850246 MsG0280007044.01.T01:CDS 25.0%
! TAGGGAAATTAATTGACAAA+AGG + Chr2:9851896-9851915 None:intergenic 25.0%
! TAGGTTTATAAAGCAAGTTA+TGG + Chr2:9850983-9851002 None:intergenic 25.0%
! TGATAAGCAAGTTAAATGTT+GGG - Chr2:9852267-9852286 MsG0280007044.01.T01:intron 25.0%
! TGCTGTTAATATTTCATGTT+TGG + Chr2:9850355-9850374 None:intergenic 25.0%
! TGTAGATAAGACTTAAAACT+TGG - Chr2:9851760-9851779 MsG0280007044.01.T01:intron 25.0%
! TGTTGTAGTTTCTATATTAC+AGG - Chr2:9851075-9851094 MsG0280007044.01.T01:intron 25.0%
! TTATAAACCTAGTAACTTCT+TGG - Chr2:9850992-9851011 MsG0280007044.01.T01:intron 25.0%
! TTATCAGTTTAATCCTTCTA+TGG + Chr2:9850227-9850246 None:intergenic 25.0%
! TTGAATCGATGAATGTTATT+AGG + Chr2:9856031-9856050 None:intergenic 25.0%
! TTGAATCTTAATTCAAGTAG+TGG - Chr2:9850575-9850594 MsG0280007044.01.T01:intron 25.0%
! TTGATTCTTTCATTCTAATC+AGG - Chr2:9851492-9851511 MsG0280007044.01.T01:intron 25.0%
!! ATCTTCTTTCCACATTTTTA+TGG + Chr2:9855966-9855985 None:intergenic 25.0%
!! TAAATGTGATCACTATGTTT+TGG - Chr2:9852870-9852889 MsG0280007044.01.T01:intron 25.0%
!! TATGTTTGTTGCTAATAACA+AGG + Chr2:9852225-9852244 None:intergenic 25.0%
!! TTGTGACAAAAATATCCTTT+TGG + Chr2:9853625-9853644 None:intergenic 25.0%
!! TTTACTTTCTGTTGCAATTT+TGG - Chr2:9854225-9854244 MsG0280007044.01.T01:intron 25.0%
!! TTTACTTTCTGTTGCAATTT+TGG + Chr2:9854244-9854225 None:intergenic 25.0%
!!! AAAACCTTAAGGAACTTTTT+TGG - Chr2:9850609-9850628 MsG0280007044.01.T01:intron 25.0%
!!! ACAAAAATATCCTTTTGGAA+GGG + Chr2:9853620-9853639 None:intergenic 25.0%
!!! ACAGAAATTCACTTAGTTTT+AGG + Chr2:9854084-9854103 None:intergenic 25.0%
!!! ATCTTCTTTTTTCCTTACTT+TGG - Chr2:9853148-9853167 MsG0280007044.01.T01:intron 25.0%
!!! ATGGTATCTTGATTGATTTT+CGG + Chr2:9850208-9850227 None:intergenic 25.0%
!!! ATGTTGAATTATTGATTCTC+TGG - Chr2:9851789-9851808 MsG0280007044.01.T01:intron 25.0%
!!! GGTAATGTTTTAAAGCAAAT+AGG - Chr2:9851349-9851368 MsG0280007044.01.T01:intron 25.0%
!!! TATTAGCATAGCTTTTTTGT+CGG + Chr2:9850275-9850294 None:intergenic 25.0%
!!! TCTTCTTTTTTCCTTACTTT+GGG - Chr2:9853149-9853168 MsG0280007044.01.T01:intron 25.0%
AACCTACAGGAAAAAAATCA+TGG + Chr2:9851591-9851610 None:intergenic 30.0%
AACCTTGTATGCTACATATT+TGG - Chr2:9855736-9855755 MsG0280007044.01.T01:intron 30.0%
AACTATAAGGTTACCGTATA+TGG - Chr2:9853700-9853719 MsG0280007044.01.T01:intron 30.0%
AATCGATGAATGTTATTAGG+AGG + Chr2:9856028-9856047 None:intergenic 30.0%
ACATGTTGGATTATTTGGAA+TGG + Chr2:9850416-9850435 None:intergenic 30.0%
AGCAATAAACACTACTAAGA+TGG + Chr2:9852700-9852719 None:intergenic 30.0%
AGTACAAAACCATGTATTAC+TGG + Chr2:9851660-9851679 None:intergenic 30.0%
AGTCACTAAAATGTCAAATG+TGG + Chr2:9852735-9852754 None:intergenic 30.0%
ATATTCACCAGAAAATCATG+AGG + Chr2:9852317-9852336 None:intergenic 30.0%
ATCAAACTTGTATGATTACG+AGG - Chr2:9853671-9853690 MsG0280007044.01.T01:intron 30.0%
ATCAATCAAGATACCATAGA+AGG - Chr2:9850211-9850230 MsG0280007044.01.T01:CDS 30.0%
ATGATTCTACAATTAGGATG+TGG - Chr2:9853227-9853246 MsG0280007044.01.T01:CDS 30.0%
ATTCCAAATAATCCAACATG+TGG - Chr2:9850415-9850434 MsG0280007044.01.T01:intron 30.0%
CAAACCAAAAAAGTTCCTTA+AGG + Chr2:9850616-9850635 None:intergenic 30.0%
CAGAGGAAAAGTAATAAACT+TGG + Chr2:9852003-9852022 None:intergenic 30.0%
GAACCAAAACAAATGTAGTT+GGG - Chr2:9851271-9851290 MsG0280007044.01.T01:intron 30.0%
GATATTGTTCCCATTATTGT+GGG - Chr2:9850639-9850658 MsG0280007044.01.T01:intron 30.0%
GCAACAGAAAGTAAACTTAA+GGG - Chr2:9855466-9855485 MsG0280007044.01.T01:intron 30.0%
GTAACTAACTGAAACCAATT+AGG + Chr2:9853839-9853858 None:intergenic 30.0%
GTACAAAACCATGTATTACT+GGG + Chr2:9851659-9851678 None:intergenic 30.0%
GTAGAATAGAAAAATGAAGG+TGG - Chr2:9853722-9853741 MsG0280007044.01.T01:intron 30.0%
GTCACTAAAATGTCAAATGT+GGG + Chr2:9852734-9852753 None:intergenic 30.0%
GTGATTATATGCCTTGAATT+CGG - Chr2:9853313-9853332 MsG0280007044.01.T01:CDS 30.0%
GTTCTCATGATTCTACAATT+AGG - Chr2:9853221-9853240 MsG0280007044.01.T01:intron 30.0%
TACAAGTTTCATTAGAAGCT+TGG + Chr2:9853885-9853904 None:intergenic 30.0%
TACGAGGATCATTAACTATA+AGG - Chr2:9853687-9853706 MsG0280007044.01.T01:intron 30.0%
TCTATAGTTTCAAAAGTCAG+AGG + Chr2:9850542-9850561 None:intergenic 30.0%
TCTTAGTAGTGTTTATTGCT+TGG - Chr2:9852700-9852719 MsG0280007044.01.T01:intron 30.0%
TGAACCAAAACAAATGTAGT+TGG - Chr2:9851270-9851289 MsG0280007044.01.T01:intron 30.0%
TGACCTAAAAAAGTTTGAAC+CGG + Chr2:9852937-9852956 None:intergenic 30.0%
TGATTCTACAATTAGGATGT+GGG - Chr2:9853228-9853247 MsG0280007044.01.T01:CDS 30.0%
TGCAACAGAAAGTAAACTTA+AGG - Chr2:9855465-9855484 MsG0280007044.01.T01:intron 30.0%
TGCAACAGAAAGTAAACTTA+GGG + Chr2:9855484-9855465 None:intergenic 30.0%
TGCAATTTCTCAATCATTTG+TGG - Chr2:9851374-9851393 MsG0280007044.01.T01:intron 30.0%
TGTTTAGGGATTATGTTTCA+TGG - Chr2:9854101-9854120 MsG0280007044.01.T01:CDS 30.0%
TTAGTATATATGTCGAGCTT+AGG + Chr2:9854942-9854961 None:intergenic 30.0%
TTCCAAATAATCCAACATGT+GGG - Chr2:9850416-9850435 MsG0280007044.01.T01:intron 30.0%
TTGACTTTGTCATATGTTTC+AGG - Chr2:9855612-9855631 MsG0280007044.01.T01:intron 30.0%
TTGCAACAGAAAGTAAACTT+AGG + Chr2:9855483-9855464 None:intergenic 30.0%
TTGTTTATTTGGGCAGATAT+GGG - Chr2:9852057-9852076 MsG0280007044.01.T01:intron 30.0%
TTTCTCAACATTTGCTTCAA+TGG - Chr2:9851100-9851119 MsG0280007044.01.T01:intron 30.0%
! ACAACTTTGAGAAACTTAGT+GGG - Chr2:9855526-9855545 MsG0280007044.01.T01:intron 30.0%
! AGAATACATGTTCACCTTTT+TGG + Chr2:9850320-9850339 None:intergenic 30.0%
! ATCCATTTAAAGCATAGAAC+TGG - Chr2:9851328-9851347 MsG0280007044.01.T01:intron 30.0%
! ATTCCCAACTACATTTGTTT+TGG + Chr2:9851277-9851296 None:intergenic 30.0%
! GACAAAAATATCCTTTTGGA+AGG + Chr2:9853621-9853640 None:intergenic 30.0%
! GTAAAATCCTCATGATTTTC+TGG - Chr2:9852307-9852326 MsG0280007044.01.T01:intron 30.0%
! GTTTCTCAAAGTTGTGATTT+TGG + Chr2:9855521-9855540 None:intergenic 30.0%
! TACCAGTTCTATGCTTTAAA+TGG + Chr2:9851333-9851352 None:intergenic 30.0%
! TGAAGGCTTAATTACACTTT+TGG + Chr2:9855552-9855571 None:intergenic 30.0%
! TGATGGCAACAATTTTGAAT+TGG - Chr2:9852167-9852186 MsG0280007044.01.T01:CDS 30.0%
! TTGTACTGGGTTAATTTTTC+AGG - Chr2:9851016-9851035 MsG0280007044.01.T01:intron 30.0%
! TTTCAGGATTGACATTTTTC+TGG - Chr2:9851032-9851051 MsG0280007044.01.T01:intron 30.0%
! TTTTGTTCTCTTTTTACGTG+AGG + Chr2:9850834-9850853 None:intergenic 30.0%
!! AAACATCCAAAGCTTTGAAT+AGG + Chr2:9852027-9852046 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + Chr2:9852401-9852420 None:intergenic 30.0%
!! ACATTTGACATTTTAGTGAC+TGG - Chr2:9852734-9852753 MsG0280007044.01.T01:intron 30.0%
!! ATTTAATTTGTTGCATGTGC+AGG - Chr2:9853987-9854006 MsG0280007044.01.T01:CDS 30.0%
!! TTATGCTCACTTTTGTTAAC+AGG - Chr2:9853180-9853199 MsG0280007044.01.T01:intron 30.0%
!!! AAGGAACTTTTTTGGTTTGT+AGG - Chr2:9850617-9850636 MsG0280007044.01.T01:intron 30.0%
!!! AGTAATACATGGTTTTGTAC+TGG - Chr2:9851659-9851678 MsG0280007044.01.T01:intron 30.0%
!!! CTTCTTTTTTCCTTACTTTG+GGG - Chr2:9853150-9853169 MsG0280007044.01.T01:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - Chr2:9852402-9852421 MsG0280007044.01.T01:intron 30.0%
AAAAAGTTCACCCTTCCAAA+AGG - Chr2:9853607-9853626 MsG0280007044.01.T01:intron 35.0%
AAAATGGTAGTATGTGGTTC+TGG - Chr2:9855669-9855688 MsG0280007044.01.T01:intron 35.0%
AAAGCTATGCTAATAATCGG+AGG - Chr2:9850280-9850299 MsG0280007044.01.T01:CDS 35.0%
AAATGGTAGTATGTGGTTCT+GGG - Chr2:9855670-9855689 MsG0280007044.01.T01:intron 35.0%
AAGTTAAGTGGATGTGTTTC+TGG + Chr2:9856001-9856020 None:intergenic 35.0%
ACTGCAACATCAAAACCTTA+AGG - Chr2:9850598-9850617 MsG0280007044.01.T01:intron 35.0%
AGCAACAGCAATAAGAAACT+AGG + Chr2:9850947-9850966 None:intergenic 35.0%
AGCCAAATATGTAGCATACA+AGG + Chr2:9855741-9855760 None:intergenic 35.0%
ATTAGCGCATTGTGTAAAGT+TGG + Chr2:9853357-9853376 None:intergenic 35.0%
ATTTGCTTCAATGGAAAGCA+TGG - Chr2:9851109-9851128 MsG0280007044.01.T01:intron 35.0%
CAAATGTAGTTGGGAATGTT+TGG - Chr2:9851280-9851299 MsG0280007044.01.T01:intron 35.0%
CACCTTTATGTTGGTCAAAT+TGG - Chr2:9850152-9850171 MsG0280007044.01.T01:CDS 35.0%
CATCGCAAACTCTAGTAATA+AGG - Chr2:9850907-9850926 MsG0280007044.01.T01:intron 35.0%
CTAACTGAAACCAATTAGGA+TGG + Chr2:9853835-9853854 None:intergenic 35.0%
CTACAACAGTTTAGTCTGAA+AGG + Chr2:9851063-9851082 None:intergenic 35.0%
CTGACAAGACCATAAAAATG+TGG - Chr2:9855954-9855973 MsG0280007044.01.T01:intron 35.0%
GAAAACTACTGTCAATGCAA+TGG - Chr2:9854018-9854037 MsG0280007044.01.T01:CDS 35.0%
GACCAATTTGACCAACATAA+AGG + Chr2:9850157-9850176 None:intergenic 35.0%
GGATATTGTTCCCATTATTG+TGG - Chr2:9850638-9850657 MsG0280007044.01.T01:intron 35.0%
GTACAAACCAAGAAGTTACT+AGG + Chr2:9851002-9851021 None:intergenic 35.0%
GTTGTTTATTTGGGCAGATA+TGG - Chr2:9852056-9852075 MsG0280007044.01.T01:intron 35.0%
TAGGGACAAGGATTTATTGA+AGG + Chr2:9855569-9855588 None:intergenic 35.0%
TAGTTTCAAAAGTCAGAGGT+CGG + Chr2:9850538-9850557 None:intergenic 35.0%
TATCAAAACAAGTCCATACC+TGG + Chr2:9852778-9852797 None:intergenic 35.0%
TATTACTAGAGTTTGCGATG+AGG + Chr2:9850907-9850926 None:intergenic 35.0%
TCTTCATTGTTAGACTTGCA+TGG - Chr2:9850467-9850486 MsG0280007044.01.T01:intron 35.0%
TGCTTTAACGTATGATTTCG+CGG - Chr2:9855907-9855926 MsG0280007044.01.T01:intron 35.0%
TGGTCAAATTGGTCAAAAGT+GGG - Chr2:9850163-9850182 MsG0280007044.01.T01:CDS 35.0%
TGTAGGTTATCTGAGTAACT+TGG - Chr2:9853032-9853051 MsG0280007044.01.T01:intron 35.0%
TTCTGCAGATCGAACTATTA+AGG - Chr2:9851682-9851701 MsG0280007044.01.T01:intron 35.0%
TTGGGATCTTGAACAAAATG+AGG - Chr2:9852285-9852304 MsG0280007044.01.T01:intron 35.0%
TTGGTCAAATTGGTCAAAAG+TGG - Chr2:9850162-9850181 MsG0280007044.01.T01:CDS 35.0%
! ATCACAACTTTGGGAAACTT+AGG + Chr2:9854164-9854183 None:intergenic 35.0%
! CACAACTTTGAGAAACTTAG+TGG - Chr2:9855525-9855544 MsG0280007044.01.T01:intron 35.0%
! CATACTTACATGTTTTCTGC+TGG - Chr2:9852241-9852260 MsG0280007044.01.T01:intron 35.0%
! CTATCAGCTCTTTGTTTATC+CGG - Chr2:9852965-9852984 MsG0280007044.01.T01:CDS 35.0%
! GTTTCCCAAAGTTGTGATTT+TGG - Chr2:9854166-9854185 MsG0280007044.01.T01:intron 35.0%
! TCACAACTTTGGGAAACTTA+GGG + Chr2:9854163-9854182 None:intergenic 35.0%
! TCATATGTTTCAGGTGACAA+TGG - Chr2:9855621-9855640 MsG0280007044.01.T01:intron 35.0%
! TCTGTTGATTGGGTCAAAAT+TGG - Chr2:9855426-9855445 MsG0280007044.01.T01:intron 35.0%
! TTAGGAGGTATGAAGTTAAG+TGG + Chr2:9856013-9856032 None:intergenic 35.0%
! TTCTTATTGCTGTTGCTTCT+GGG - Chr2:9850950-9850969 MsG0280007044.01.T01:intron 35.0%
! TTTCTTATTGCTGTTGCTTC+TGG - Chr2:9850949-9850968 MsG0280007044.01.T01:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - Chr2:9852600-9852619 MsG0280007044.01.T01:intron 35.0%
!! AGTAACTTCTTGGTTTGTAC+TGG - Chr2:9851002-9851021 MsG0280007044.01.T01:intron 35.0%
!! CTATTTTCTAGCATTTGCAC+TGG + Chr2:9853938-9853957 None:intergenic 35.0%
!! GTAACTTCTTGGTTTGTACT+GGG - Chr2:9851003-9851022 MsG0280007044.01.T01:intron 35.0%
!! GTTCTAAAGCACACATTAGT+AGG - Chr2:9852094-9852113 MsG0280007044.01.T01:intron 35.0%
!! TGTCAATGATAAGGGTGTTA+TGG - Chr2:9854042-9854061 MsG0280007044.01.T01:CDS 35.0%
!! TTTGACATTTTAGTGACTGG+AGG - Chr2:9852737-9852756 MsG0280007044.01.T01:intron 35.0%
!!! ACGGAGGGAGTATTTTATTT+AGG - Chr2:9852655-9852674 MsG0280007044.01.T01:intron 35.0%
!!! ATGCCGGTTCAAACTTTTTT+AGG - Chr2:9852931-9852950 MsG0280007044.01.T01:CDS 35.0%
!!! GACCATGATTTTTTTCCTGT+AGG - Chr2:9851586-9851605 MsG0280007044.01.T01:intron 35.0%
!!! TAGTTTTAGGTCAATACCTC+CGG + Chr2:9854071-9854090 None:intergenic 35.0%
AAAGCCATCAAGCAATGACA+TGG - Chr2:9850733-9850752 MsG0280007044.01.T01:intron 40.0%
AACAAGTGTGCTTTCTCTAC+AGG - Chr2:9852199-9852218 MsG0280007044.01.T01:intron 40.0%
AACCTGTAAGAAGGAAGGTT+AGG + Chr2:9855862-9855881 None:intergenic 40.0%
AATGATAGATGAGTGGCACA+AGG - Chr2:9851219-9851238 MsG0280007044.01.T01:intron 40.0%
ACATACCAGAACCGAATTCA+AGG + Chr2:9853327-9853346 None:intergenic 40.0%
ACCTGTAAGAAGGAAGGTTA+GGG + Chr2:9855861-9855880 None:intergenic 40.0%
AGAAAGTAAACTTAGGGTCC+TGG + Chr2:9854215-9854234 None:intergenic 40.0%
AGTTCACAAGGCAACATACA+TGG + Chr2:9851854-9851873 None:intergenic 40.0%
ATACAGAACACATACTCCGT+AGG + Chr2:9853447-9853466 None:intergenic 40.0%
ATAGCCATGTCATTGCTTGA+TGG + Chr2:9850740-9850759 None:intergenic 40.0%
ATATGCCTTGAATTCGGTTC+TGG - Chr2:9853319-9853338 MsG0280007044.01.T01:CDS 40.0%
ATCACGTGATCGCGAAAAAT+AGG + Chr2:9855588-9855607 None:intergenic 40.0%
ATGATAGATGAGTGGCACAA+GGG - Chr2:9851220-9851239 MsG0280007044.01.T01:intron 40.0%
CAGTTGATCCCAGTAATACA+TGG - Chr2:9851648-9851667 MsG0280007044.01.T01:intron 40.0%
CATAGAAAGTCTGTCTGTTC+GGG - Chr2:9853407-9853426 MsG0280007044.01.T01:intron 40.0%
CATTGAACCTGTAAGAAGGA+AGG + Chr2:9855867-9855886 None:intergenic 40.0%
CCATAGAAAGTCTGTCTGTT+CGG - Chr2:9853406-9853425 MsG0280007044.01.T01:intron 40.0%
CTACTAGTGACCATCCTAAT+TGG - Chr2:9853822-9853841 MsG0280007044.01.T01:intron 40.0%
CTCTGTCCTATTCAAAGCTT+TGG - Chr2:9852018-9852037 MsG0280007044.01.T01:intron 40.0%
CTGCAGCCAACAAATAAGAA+GGG + Chr2:9853553-9853572 None:intergenic 40.0%
CTTCCTTCTTACAGGTTCAA+TGG - Chr2:9855865-9855884 MsG0280007044.01.T01:intron 40.0%
GACATGGCTATCGCTATTTA+AGG - Chr2:9850749-9850768 MsG0280007044.01.T01:intron 40.0%
GACCCACATGTTGGATTATT+TGG + Chr2:9850421-9850440 None:intergenic 40.0%
GAGAACAAGTGAACACTTGA+GGG + Chr2:9853207-9853226 None:intergenic 40.0%
GAGAGTAATGCCAACTAGTA+TGG + Chr2:9850449-9850468 None:intergenic 40.0%
GCAATGGCTGTCAATGATAA+GGG - Chr2:9854034-9854053 MsG0280007044.01.T01:CDS 40.0%
GCTTTAACGTATGATTTCGC+GGG - Chr2:9855908-9855927 MsG0280007044.01.T01:intron 40.0%
GGGACCAAAATCACAACTTT+GGG + Chr2:9854173-9854192 None:intergenic 40.0%
GTAGTGTGCAGCGTATTAAT+TGG - Chr2:9852532-9852551 MsG0280007044.01.T01:intron 40.0%
GTTATCATCAGTGGTCACTT+AGG - Chr2:9851608-9851627 MsG0280007044.01.T01:intron 40.0%
TAATAAGGCTCCCCAAAGTA+AGG + Chr2:9853163-9853182 None:intergenic 40.0%
TACAGGTTCAATGGACAATG+AGG - Chr2:9855874-9855893 MsG0280007044.01.T01:intron 40.0%
TCACGTGATCGCGAAAAATA+GGG + Chr2:9855587-9855606 None:intergenic 40.0%
TCTCCTGTTGTCTGTAAAAC+TGG - Chr2:9853007-9853026 MsG0280007044.01.T01:intron 40.0%
TGAGAACAAGTGAACACTTG+AGG + Chr2:9853208-9853227 None:intergenic 40.0%
TGCAATGGCTGTCAATGATA+AGG - Chr2:9854033-9854052 MsG0280007044.01.T01:CDS 40.0%
TGCAGCCAACAAATAAGAAG+GGG + Chr2:9853552-9853571 None:intergenic 40.0%
TGGTCAAAAGTGGGAGATAA+AGG - Chr2:9850172-9850191 MsG0280007044.01.T01:CDS 40.0%
TGTCCATTGAACCTGTAAGA+AGG + Chr2:9855871-9855890 None:intergenic 40.0%
TGTCTGTAAAACTGGCATGT+AGG - Chr2:9853015-9853034 MsG0280007044.01.T01:intron 40.0%
TGTGCAGCGTATTAATTGGA+GGG - Chr2:9852536-9852555 MsG0280007044.01.T01:intron 40.0%
TTCCTGTAGGTTATCATCAG+TGG - Chr2:9851599-9851618 MsG0280007044.01.T01:intron 40.0%
TTTACACAATGCGCTAATGC+AGG - Chr2:9853359-9853378 MsG0280007044.01.T01:intron 40.0%
TTTGCGATGAGGAGAATGAT+GGG + Chr2:9850896-9850915 None:intergenic 40.0%
! ACAACTTTGGGAAACTTAGG+GGG + Chr2:9854161-9854180 None:intergenic 40.0%
! ATGCCAGTTTTACAGACAAC+AGG + Chr2:9853013-9853032 None:intergenic 40.0%
! CACAACTTTGGGAAACTTAG+GGG + Chr2:9854162-9854181 None:intergenic 40.0%
! TCTCACCCCTTCTTATTTGT+TGG - Chr2:9853544-9853563 MsG0280007044.01.T01:intron 40.0%
! TGGAAAGCATGGCAAGTAAT+TGG - Chr2:9851120-9851139 MsG0280007044.01.T01:intron 40.0%
!! AGGTCTCTAGAGTTCCAAAA+AGG - Chr2:9850303-9850322 MsG0280007044.01.T01:CDS 40.0%
!! CAAAGCTTTGAATAGGACAG+AGG + Chr2:9852020-9852039 None:intergenic 40.0%
!! CTTGATTGATTTTCGGTCTG+AGG + Chr2:9850201-9850220 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - Chr2:9852640-9852659 MsG0280007044.01.T01:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr2:9852659-9852640 None:intergenic 40.0%
AACACATACTCCGTAGGATG+TGG + Chr2:9853441-9853460 None:intergenic 45.0%
ACCATGGAGAAACTACAAGG+TGG - Chr2:9851163-9851182 MsG0280007044.01.T01:intron 45.0%
ACGATTCTGTTTGCCAGGTA+TGG - Chr2:9852762-9852781 MsG0280007044.01.T01:CDS 45.0%
ACTGGGTCAAAATTGGGCTA+GGG + Chr2:9854253-9854272 None:intergenic 45.0%
AGGATGTGGGACCTTAGATA+TGG - Chr2:9853241-9853260 MsG0280007044.01.T01:CDS 45.0%
ATGGTACATGACCCACATGT+TGG + Chr2:9850430-9850449 None:intergenic 45.0%
ATTTGGGCAGATATGGGACT+TGG - Chr2:9852063-9852082 MsG0280007044.01.T01:intron 45.0%
CAGGTGACAATGGTAGTATG+TGG - Chr2:9855631-9855650 MsG0280007044.01.T01:intron 45.0%
CAGTGATCAAGTAAGAGGTG+AGG - Chr2:9852120-9852139 MsG0280007044.01.T01:intron 45.0%
CATCAGTGGTCACTTAGGAT+TGG - Chr2:9851613-9851632 MsG0280007044.01.T01:intron 45.0%
CATCCCTAGTGCAACAAGAA+CGG - Chr2:9850868-9850887 MsG0280007044.01.T01:intron 45.0%
CCATGGAGAAACTACAAGGT+GGG - Chr2:9851164-9851183 MsG0280007044.01.T01:intron 45.0%
CCGAACAGACAGACTTTCTA+TGG + Chr2:9853409-9853428 None:intergenic 45.0%
CCTGCAGCCAACAAATAAGA+AGG + Chr2:9853554-9853573 None:intergenic 45.0%
GAACCGTTCTTGTTGCACTA+GGG + Chr2:9850874-9850893 None:intergenic 45.0%
GAATGGTTCGATGTAACACG+TGG + Chr2:9850399-9850418 None:intergenic 45.0%
GACCACTGATGATAACCTAC+AGG + Chr2:9851604-9851623 None:intergenic 45.0%
GACCCAATCAACAGACACAT+GGG + Chr2:9855421-9855440 None:intergenic 45.0%
GAGAAGAATCTGCATACCGT+TGG + Chr2:9852991-9853010 None:intergenic 45.0%
GATCGCGAAAAATAGGGACA+AGG + Chr2:9855581-9855600 None:intergenic 45.0%
GCCTAGTTAAGCAGTTCACA+AGG + Chr2:9851866-9851885 None:intergenic 45.0%
GCCTTGTGAACTGCTTAACT+AGG - Chr2:9851862-9851881 MsG0280007044.01.T01:intron 45.0%
GCTATGCTAATAATCGGAGG+AGG - Chr2:9850283-9850302 MsG0280007044.01.T01:CDS 45.0%
GGACATACGTAGTGAAATGC+CGG - Chr2:9852915-9852934 MsG0280007044.01.T01:CDS 45.0%
GGGGACCAAAATCACAACTT+TGG + Chr2:9854174-9854193 None:intergenic 45.0%
GGGTCATGTACCATACTAGT+TGG - Chr2:9850436-9850455 MsG0280007044.01.T01:intron 45.0%
GGTCACAGTGATCAAGTAAG+AGG - Chr2:9852115-9852134 MsG0280007044.01.T01:intron 45.0%
GTAATTGGCCACAACCTGAA+TGG - Chr2:9851135-9851154 MsG0280007044.01.T01:intron 45.0%
GTGTGCAGCGTATTAATTGG+AGG - Chr2:9852535-9852554 MsG0280007044.01.T01:intron 45.0%
GTTTGCGATGAGGAGAATGA+TGG + Chr2:9850897-9850916 None:intergenic 45.0%
TCAAAAGTCAGAGGTCGGAA+TGG + Chr2:9850533-9850552 None:intergenic 45.0%
TCCCTAACCTTCCTTCTTAC+AGG - Chr2:9855857-9855876 MsG0280007044.01.T01:intron 45.0%
TCTTGTTGCACTAGGGATGA+AGG + Chr2:9850867-9850886 None:intergenic 45.0%
TGACCCAATCAACAGACACA+TGG + Chr2:9855422-9855441 None:intergenic 45.0%
TGATTGGGTCAAAATTGGCG+TGG - Chr2:9855431-9855450 MsG0280007044.01.T01:intron 45.0%
TGCACCATGGAGAAACTACA+AGG - Chr2:9851160-9851179 MsG0280007044.01.T01:intron 45.0%
TTACGTGAGGCACAAGAAAG+TGG + Chr2:9850821-9850840 None:intergenic 45.0%
! CCTTCTTATTTGTTGGCTGC+AGG - Chr2:9853551-9853570 MsG0280007044.01.T01:intron 45.0%
! CTCTTTGTTTATCCGGCCAA+CGG - Chr2:9852972-9852991 MsG0280007044.01.T01:CDS 45.0%
! GCAAGCTTTTGCATCTGCAT+CGG - Chr2:9853573-9853592 MsG0280007044.01.T01:intron 45.0%
! GTGGATTGAGCTTCTTTGCT+TGG + Chr2:9850380-9850399 None:intergenic 45.0%
!! AAGTGGATGTGTTTCTGGAG+TGG + Chr2:9855996-9856015 None:intergenic 45.0%
!! AGCGTTGACTGGGTCAAAAT+TGG + Chr2:9854260-9854279 None:intergenic 45.0%
!! GATAAGGGTGTTATGGTGAC+CGG - Chr2:9854049-9854068 MsG0280007044.01.T01:CDS 45.0%
!! GCGTTGACTGGGTCAAAATT+GGG + Chr2:9854259-9854278 None:intergenic 45.0%
!! GTAGTATGTGGTTCTGGGAT+TGG - Chr2:9855675-9855694 MsG0280007044.01.T01:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - Chr2:9852639-9852658 MsG0280007044.01.T01:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + Chr2:9852658-9852639 None:intergenic 45.0%
!! AAAAAAATATTAAAAAATTC+TGG - Chr2:9854428-9854447 MsG0280007044.01.T01:intron 5.0%
!! AAAAAAATATTATAAAATTC+TGG + Chr2:9855223-9855242 None:intergenic 5.0%
!! AATTAAAAATAAAAAAAATC+TGG - Chr2:9854324-9854343 MsG0280007044.01.T01:intron 5.0%
!! GAAAAAATTAATAAAAAAAT+TGG - Chr2:9854403-9854422 MsG0280007044.01.T01:intron 5.0%
!! GAAAATAATAAAAAAAATTA+TGG + Chr2:9855273-9855292 None:intergenic 5.0%
!!! AATTTTTTTTAAAAAAATTC+TGG - Chr2:9854374-9854393 MsG0280007044.01.T01:intron 5.0%
AACCTGAATGGCATGCACCA+TGG - Chr2:9851147-9851166 MsG0280007044.01.T01:intron 50.0%
AAGTCTGTCTGTTCGGGCAA+TGG - Chr2:9853413-9853432 MsG0280007044.01.T01:intron 50.0%
AGAATCTGCATACCGTTGGC+CGG + Chr2:9852987-9853006 None:intergenic 50.0%
AGATGAGTGGCACAAGGGTT+TGG - Chr2:9851225-9851244 MsG0280007044.01.T01:intron 50.0%
AGGACACGATTCTGTTTGCC+AGG - Chr2:9852757-9852776 MsG0280007044.01.T01:CDS 50.0%
CAGATATGGGACTTGGCAAG+TGG - Chr2:9852070-9852089 MsG0280007044.01.T01:intron 50.0%
CCCACCTTGTAGTTTCTCCA+TGG + Chr2:9851167-9851186 None:intergenic 50.0%
CGTATGATTTCGCGGGTACA+AGG - Chr2:9855915-9855934 MsG0280007044.01.T01:intron 50.0%
GACTGGGTCAAAATTGGGCT+AGG + Chr2:9854254-9854273 None:intergenic 50.0%
GGAACCGTTCTTGTTGCACT+AGG + Chr2:9850875-9850894 None:intergenic 50.0%
GGCAATGGTTCCACATCCTA+CGG - Chr2:9853428-9853447 MsG0280007044.01.T01:CDS 50.0%
GGTTCAATGGACAATGAGGC+TGG - Chr2:9855878-9855897 MsG0280007044.01.T01:intron 50.0%
TGGGTCAAAATTGGCGTGGT+GGG - Chr2:9855435-9855454 MsG0280007044.01.T01:intron 50.0%
TGTTGCACTAGGGATGAAGG+AGG + Chr2:9850864-9850883 None:intergenic 50.0%
TTGGGTCAAAATTGGCGTGG+TGG - Chr2:9855434-9855453 MsG0280007044.01.T01:intron 50.0%
! CGCCCATGTGTCTGTTGATT+GGG - Chr2:9855416-9855435 MsG0280007044.01.T01:intron 50.0%
! CTGGGTCAAAATTGGGCTAG+GGG + Chr2:9854252-9854271 None:intergenic 50.0%
! TGGGTCAAAATTGGGCTAGG+GGG + Chr2:9854251-9854270 None:intergenic 50.0%
!! TGGTTCTGGGATTGGAAGAG+TGG - Chr2:9855683-9855702 MsG0280007044.01.T01:intron 50.0%
CTCCATGGTGCATGCCATTC+AGG + Chr2:9851152-9851171 None:intergenic 55.0%
GCGCCCATGTGTCTGTTGAT+TGG - Chr2:9855415-9855434 MsG0280007044.01.T01:intron 55.0%
GTCAGAGGTCGGAATGGATC+TGG + Chr2:9850527-9850546 None:intergenic 55.0%
!! AAGGGTGTTATGGTGACCGG+AGG - Chr2:9854052-9854071 MsG0280007044.01.T01:CDS 55.0%
!! CAACCACGTCAGCGTTGACT+GGG + Chr2:9854270-9854289 None:intergenic 55.0%
!! GGTGCATGCCATTCAGGTTG+TGG + Chr2:9851146-9851165 None:intergenic 55.0%
TGACCCAGTCAACGCTGACG+TGG - Chr2:9854264-9854283 MsG0280007044.01.T01:intron 60.0%
! GAAGGGGTGAGAGCGTGAGA+CGG + Chr2:9853536-9853555 None:intergenic 60.0%
!! GCAACCACGTCAGCGTTGAC+TGG + Chr2:9854271-9854290 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 9850144 9856075 9850144 ID=MsG0280007044.01;Name=MsG0280007044.01
Chr2 mRNA 9850144 9856075 9850144 ID=MsG0280007044.01.T01;Parent=MsG0280007044.01;Name=MsG0280007044.01.T01;_AED=0.34;_eAED=0.41;_QI=0|0|0|1|0.44|0.4|10|0|385
Chr2 exon 9856046 9856075 9856046 ID=MsG0280007044.01.T01:exon:2277;Parent=MsG0280007044.01.T01
Chr2 exon 9855038 9855136 9855038 ID=MsG0280007044.01.T01:exon:2276;Parent=MsG0280007044.01.T01
Chr2 exon 9854516 9854611 9854516 ID=MsG0280007044.01.T01:exon:2275;Parent=MsG0280007044.01.T01
Chr2 exon 9853913 9854146 9853913 ID=MsG0280007044.01.T01:exon:2274;Parent=MsG0280007044.01.T01
Chr2 exon 9853422 9853542 9853422 ID=MsG0280007044.01.T01:exon:2273;Parent=MsG0280007044.01.T01
Chr2 exon 9853226 9853353 9853226 ID=MsG0280007044.01.T01:exon:2272;Parent=MsG0280007044.01.T01
Chr2 exon 9852912 9853017 9852912 ID=MsG0280007044.01.T01:exon:2271;Parent=MsG0280007044.01.T01
Chr2 exon 9852757 9852838 9852757 ID=MsG0280007044.01.T01:exon:2270;Parent=MsG0280007044.01.T01
Chr2 exon 9852146 9852210 9852146 ID=MsG0280007044.01.T01:exon:2269;Parent=MsG0280007044.01.T01
Chr2 exon 9850144 9850340 9850144 ID=MsG0280007044.01.T01:exon:2268;Parent=MsG0280007044.01.T01
Chr2 CDS 9856046 9856075 9856046 ID=MsG0280007044.01.T01:cds;Parent=MsG0280007044.01.T01
Chr2 CDS 9855038 9855136 9855038 ID=MsG0280007044.01.T01:cds;Parent=MsG0280007044.01.T01
Chr2 CDS 9854516 9854611 9854516 ID=MsG0280007044.01.T01:cds;Parent=MsG0280007044.01.T01
Chr2 CDS 9853913 9854146 9853913 ID=MsG0280007044.01.T01:cds;Parent=MsG0280007044.01.T01
Chr2 CDS 9853422 9853542 9853422 ID=MsG0280007044.01.T01:cds;Parent=MsG0280007044.01.T01
Chr2 CDS 9853226 9853353 9853226 ID=MsG0280007044.01.T01:cds;Parent=MsG0280007044.01.T01
Chr2 CDS 9852912 9853017 9852912 ID=MsG0280007044.01.T01:cds;Parent=MsG0280007044.01.T01
Chr2 CDS 9852757 9852838 9852757 ID=MsG0280007044.01.T01:cds;Parent=MsG0280007044.01.T01
Chr2 CDS 9852146 9852210 9852146 ID=MsG0280007044.01.T01:cds;Parent=MsG0280007044.01.T01
Chr2 CDS 9850144 9850340 9850144 ID=MsG0280007044.01.T01:cds;Parent=MsG0280007044.01.T01
Gene Sequence

>MsG0280007044.01.T01

ATGCATGACACCTTTATGTTGGTCAAATTGTTTCTATATTACAGGAATTTCTCAACATTTGCTTCAATGGAAAGCATGGCAAGTAATTGGCCACAACCTGAATGGCATGCACCATGGAGAAACTACAAGGTTATCATCAGTGGTCACTTAGGATTGGTGAGATGTATTGCAGTTGATCCCAGTAATACATGGTTTTGTACTGGTTCTGCAGATCGAACTATTAAGATATGGGACTTGGCAAGTGGTGTTCTAAAGCACACATTAGTAGGTCACAGTGATCAAGTAAGAGGTGAGGAGCTAAAGTATAATTATTTATTAGTGATGGCAACAATTTTGAATTGGATTAATAATAACAAGTGTGCTTTCTCTACAGGCCTTGTTATTAGCAACAAACATACTTACATGTTTTCTGCTGGTGATGATAAGCAAGTTAAATGTTGGGATCTTGAACAAAATGAGGTTATTAGTTCTTATATTGGCCATCTTAGTAGTGTTTATTGCTTGGCTCTTCATCCCACATTTGACATTTTAGTGACTGGAGGACACGATTCTGTTTGCCAGGTATGGACTTGTTTTGATAAAAATAAATGTGATCACTATGTTTTGGTGATACTAAATTTTCATGTTTGGGACATACGTAGTGAAATGCCGGTTCAAACTTTTTTAGGTCATGATCACGCTATCAGCTCTTTGTTTATCCGGCCAACGGACCCTCAAGTGTTCACTTGTTCTCATGATTCTACAATTAGGATGTGGGACCTTAGATATGGTAATTTATTGTTGATTTTTCATATCTTCTTGTTTTTCTTTGTTTGTAAAACAATGTTAGCTCTTAAAAACCATAGAAAGTCTGTCTGTTCGGGCAATGGTTCCACATCCTACGGAGTATGTGTTCTGTCTCAACAGAAAACTACTGTCAATGCAATGGCTGTCAATGATAAGGGTGTTATGGTGACCGGAGGTTCAATGGACAATGAGGCTGGTATTTATGCTTTAACGTATGATTTCGCGGGTACAAGGCTTATATCATGTGAAGCTGACAAGACCATAAAAATGTGGAAAGAAGATGAGACTGCCACTCCAGAAACACATCCACTTAACTTCATACCTCCTAATAACATTCATCGATTCAAGATACGCGATCGTCATTTATTCTGA
Protein sequence

>MsG0280007044.01.T01

MHDTFMLVKLFLYYRNFSTFASMESMASNWPQPEWHAPWRNYKVIISGHLGLVRCIAVDPSNTWFCTGSADRTIKIWDLASGVLKHTLVGHSDQVRGEELKYNYLLVMATILNWINNNKCAFSTGLVISNKHTYMFSAGDDKQVKCWDLEQNEVISSYIGHLSSVYCLALHPTFDILVTGGHDSVCQVWTCFDKNKCDHYVLVILNFHVWDIRSEMPVQTFLGHDHAISSLFIRPTDPQVFTCSHDSTIRMWDLRYGNLLLIFHIFLFFFVCKTMLALKNHRKSVCSGNGSTSYGVCVLSQQKTTVNAMAVNDKGVMVTGGSMDNEAGIYALTYDFAGTRLISCEADKTIKMWKEDETATPETHPLNFIPPNNIHRFKIRDRHLF*