AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040599.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040599.01.T01 MTR_7g093540 89.161 286 16 4 1 286 1 271 3.64e-180 497
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040599.01.T01 AT3G12040 71.806 227 62 2 60 284 27 253 4.82e-120 344
MsG0780040599.01.T01 AT3G12040 71.839 174 48 1 60 232 27 200 2.00e-89 265

Find 78 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTTGAAGCGTTGTGGTTT+TGG 0.117748 7:-79783400 None:intergenic
TACTACCACTCTACTCTATA+AGG 0.262672 7:-79786722 None:intergenic
GGTTGGTGGAGAGTGGAGTA+TGG 0.266250 7:-79783434 None:intergenic
TGAATCAAGTATACAAGATT+TGG 0.268011 7:-79783344 None:intergenic
TATTGAGTATTTACCGCAAA+TGG 0.298893 7:-79784611 None:intergenic
CTTACAACGGGAGCAGTTCT+TGG 0.305613 7:-79784326 None:intergenic
GACGGTGAGGTTGAGTGATT+TGG 0.358288 7:-79783482 None:intergenic
GACCTTGCCCCTCGTTTGCT+TGG 0.369082 7:+79783595 MsG0780040599.01.T01:CDS
CCTATACTTCTTACGGGCCC+TGG 0.376030 7:+79785489 MsG0780040599.01.T01:CDS
GACAAACCTATACTTCTTAC+GGG 0.387323 7:+79785483 MsG0780040599.01.T01:CDS
ACCTTGCCCCTCGTTTGCTT+GGG 0.401582 7:+79783596 MsG0780040599.01.T01:CDS
GGTGGCCTGAGAGTGTTTCT+TGG 0.402623 7:-79786700 None:intergenic
CACAGTGCGTCGACATGCTC+TGG 0.408893 7:-79786640 None:intergenic
CATGCTCTGGCAGAGCGAAT+TGG 0.410778 7:-79786627 None:intergenic
CCAGGGCCCGTAAGAAGTAT+AGG 0.411504 7:-79785489 None:intergenic
TGACAAACCTATACTTCTTA+CGG 0.413140 7:+79785482 MsG0780040599.01.T01:CDS
ATTGAGTATTTACCGCAAAT+GGG 0.416112 7:-79784610 None:intergenic
GCATATGTTTATCTTTGCTA+TGG 0.422341 7:+79784514 MsG0780040599.01.T01:CDS
GAATCAAGTATACAAGATTT+GGG 0.430397 7:-79783343 None:intergenic
TGGAGAGTGGAGTATGGGTT+TGG 0.437895 7:-79783428 None:intergenic
AAGAGGGAACTGACCTTCCC+AGG 0.448463 7:-79785507 None:intergenic
GTTGGTGGAGAGTGGAGTAT+GGG 0.450247 7:-79783433 None:intergenic
GCTGAATGTTGTTGCTGATA+AGG 0.454716 7:+79784549 MsG0780040599.01.T01:CDS
AGGGGTATATAGTGGATGAT+TGG 0.460403 7:-79786449 None:intergenic
TCGTCAATCTTAGGTTGGTC+AGG 0.465409 7:+79786402 MsG0780040599.01.T01:intron
TCAGCTAGTCATGGTCGGTT+TGG 0.469142 7:+79784296 MsG0780040599.01.T01:CDS
TCCAGAGCCAGAAAACATAT+TGG 0.484970 7:+79786585 MsG0780040599.01.T01:CDS
TTGCCATTGCAGATTCTGCT+TGG 0.487963 7:+79786668 MsG0780040599.01.T01:CDS
AACTTACCAGGGGTATATAG+TGG 0.490627 7:-79786457 None:intergenic
GGTGGTGTAGAACTCTTAGA+TGG 0.491586 7:+79786562 MsG0780040599.01.T01:intron
TCATTACAACGGTGCTGCTA+TGG 0.491958 7:-79783375 None:intergenic
ACTACCACTCTACTCTATAA+GGG 0.496030 7:-79786721 None:intergenic
TTGCGAGGCGGTTTGGTTGG+TGG 0.501467 7:-79783448 None:intergenic
CACTAGGTCTTTCAACAGAA+TGG 0.516784 7:+79786425 MsG0780040599.01.T01:CDS
TGAAAGAACTCGCGTGGCAA+AGG 0.517031 7:-79783559 None:intergenic
GCGGTTTGGTTGGTGGAGAG+TGG 0.520032 7:-79783441 None:intergenic
TCTTAGGTTGGTCAGGCACT+AGG 0.523435 7:+79786409 MsG0780040599.01.T01:intron
GCGCTCGAATGTGGTGGGAG+TGG 0.529349 7:-79783311 None:intergenic
CTATACTTCTTACGGGCCCT+GGG 0.534848 7:+79785490 MsG0780040599.01.T01:CDS
TAAACATATGCATGCCCACC+TGG 0.535737 7:-79784502 None:intergenic
TGATTCGCGCTCGAATGTGG+TGG 0.548917 7:-79783317 None:intergenic
AATGTGGTGGGAGTGGAACC+AGG 0.553706 7:-79783304 None:intergenic
GCGATTCGCTTGAAGCGTTG+TGG 0.555814 7:-79783406 None:intergenic
ATGTGAGGTTCTGATGATGA+TGG 0.556016 7:-79783517 None:intergenic
TGTGAGGTTCTGATGATGAT+GGG 0.556171 7:-79783516 None:intergenic
TTGAGTATTTACCGCAAATG+GGG 0.564484 7:-79784609 None:intergenic
GTTGCTGATAAGGAAGGAGT+TGG 0.567474 7:+79784559 MsG0780040599.01.T01:CDS
ACTTCTTACGGGCCCTGGGA+AGG 0.577700 7:+79785494 MsG0780040599.01.T01:CDS
CAACGGTGCTGCTATGGTAA+CGG 0.578437 7:-79783369 None:intergenic
GATTCGCGCTCGAATGTGGT+GGG 0.582854 7:-79783316 None:intergenic
GTGCTCCAAGAAACACTCTC+AGG 0.585506 7:+79786695 MsG0780040599.01.T01:CDS
TCCCAAGCAAACGAGGGGCA+AGG 0.590609 7:-79783597 None:intergenic
ACTTGATTCGCGCTCGAATG+TGG 0.596526 7:-79783320 None:intergenic
AGAAACTTCCCAAGCAAACG+AGG 0.602311 7:-79783604 None:intergenic
TGGTGGGAGTGGAACCAGGA+GGG 0.607950 7:-79783300 None:intergenic
GAGCCAGAAAACATATTGGT+AGG 0.608776 7:+79786589 MsG0780040599.01.T01:CDS
AATCATCCACTATATACCCC+TGG 0.615418 7:+79786451 MsG0780040599.01.T01:CDS
TCAAATGACTCAGCTAGTCA+TGG 0.618580 7:+79784287 MsG0780040599.01.T01:CDS
GAAACTTCCCAAGCAAACGA+GGG 0.625288 7:-79783603 None:intergenic
AGAGGGAACTGACCTTCCCA+GGG 0.628624 7:-79785506 None:intergenic
GATAAGGAAGGAGTTGGAGC+TGG 0.629332 7:+79784565 MsG0780040599.01.T01:CDS
CAACAACATTCAGCATTGTG+TGG 0.633076 7:-79784540 None:intergenic
GGTTGAGTTCAGCGACGGTG+AGG 0.635565 7:-79783495 None:intergenic
ATGACTCAGCTAGTCATGGT+CGG 0.649849 7:+79784291 MsG0780040599.01.T01:CDS
TGAGTATTTACCGCAAATGG+GGG 0.651134 7:-79784608 None:intergenic
TCGATTTGAAAGAACTCGCG+TGG 0.651209 7:-79783565 None:intergenic
AATCCAAGCAGAATCTGCAA+TGG 0.654022 7:-79786671 None:intergenic
ATATTGGTAGGTCCACGTGT+TGG 0.658180 7:+79786601 MsG0780040599.01.T01:CDS
AATGTTGTTGCTGATAAGGA+AGG 0.666992 7:+79784553 MsG0780040599.01.T01:CDS
GATGTTATTCAGCAGCGCCG+AGG 0.667447 7:+79785450 MsG0780040599.01.T01:CDS
ACCACTCTACTCTATAAGGG+TGG 0.671082 7:-79786718 None:intergenic
AAACTTCCCAAGCAAACGAG+GGG 0.673450 7:-79783602 None:intergenic
CGTTGTTCTTCAGATTACCG+AGG 0.680298 7:+79783639 MsG0780040599.01.T01:CDS
GCGAATTGGATTCCAACACG+TGG 0.699811 7:-79786613 None:intergenic
GTGGTGGGAGTGGAACCAGG+AGG 0.704635 7:-79783301 None:intergenic
CAGAGCATGTCGACGCACTG+TGG 0.719371 7:+79786641 MsG0780040599.01.T01:CDS
TGATGGGTTGAGTTCAGCGA+CGG 0.730960 7:-79783500 None:intergenic
CGGTAATCTGAAGAACAACG+TGG 0.772239 7:-79783636 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAATAACATGAAAAA+TGG - Chr7:79786282-79786301 None:intergenic 10.0%
!! AATTAATAATGATCAATAGA+TGG + Chr7:79785857-79785876 MsG0780040599.01.T01:intron 15.0%
!! GCTTATGTAAATAATAAAAA+AGG - Chr7:79784370-79784389 None:intergenic 15.0%
!! TTATTAACATTAGAGTTTAA+TGG + Chr7:79784007-79784026 MsG0780040599.01.T01:intron 15.0%
!!! AATTAATAGATTCTCTAAAA+AGG + Chr7:79784920-79784939 MsG0780040599.01.T01:intron 15.0%
!!! ATATAACAAGGAATTAATTT+TGG + Chr7:79784245-79784264 MsG0780040599.01.T01:intron 15.0%
!!! ATTTCAATTTTCAACTATAT+TGG - Chr7:79783976-79783995 None:intergenic 15.0%
!!! CAAAAGTTTTTTCATTTTTT+TGG + Chr7:79784191-79784210 MsG0780040599.01.T01:intron 15.0%
!!! TTAGTAAGTGTTTTAAAATA+AGG - Chr7:79784731-79784750 None:intergenic 15.0%
!! AACACTTAGACAAAAAAATT+TGG - Chr7:79785730-79785749 None:intergenic 20.0%
!! AATGTACTATAAAATGTTTG+CGG - Chr7:79785018-79785037 None:intergenic 20.0%
!! TAAATGATAAAACCTTTCTA+TGG - Chr7:79786235-79786254 None:intergenic 20.0%
!! TATTAAACTTAAGAACATAG+TGG + Chr7:79786296-79786315 MsG0780040599.01.T01:intron 20.0%
!! TTATGAAAATAAGCTGAAAA+TGG - Chr7:79783799-79783818 None:intergenic 20.0%
!!! AACTTGTTACTAGTAAATAT+AGG + Chr7:79785639-79785658 MsG0780040599.01.T01:intron 20.0%
!!! ATAAGTAAACTTTGAAGAAA+CGG + Chr7:79785242-79785261 MsG0780040599.01.T01:intron 20.0%
!!! CTAGTAGTTTTATCTTATTT+TGG + Chr7:79785101-79785120 MsG0780040599.01.T01:intron 20.0%
! AAAATATAGAGAACTTACCA+GGG - Chr7:79786471-79786490 None:intergenic 25.0%
! AAAATGGTACTGTAAAAAAG+AGG - Chr7:79786266-79786285 None:intergenic 25.0%
! AACTTAGCATCTTCAATATA+AGG - Chr7:79784422-79784441 None:intergenic 25.0%
! ATGTAAAATCATAAAACGTG+GGG - Chr7:79785925-79785944 None:intergenic 25.0%
! ATGTCGATAGTAAAAGTTTA+CGG - Chr7:79784046-79784065 None:intergenic 25.0%
! ATTAGAAGTTACAAACAAAG+TGG - Chr7:79784101-79784120 None:intergenic 25.0%
! CATGTAAAATCATAAAACGT+GGG - Chr7:79785926-79785945 None:intergenic 25.0%
! CCTAGAAATAATTGTATTCA+AGG - Chr7:79785395-79785414 None:intergenic 25.0%
! CTCTGCTATCATTTATTATA+AGG + Chr7:79785366-79785385 MsG0780040599.01.T01:intron 25.0%
! GAATCAAGTATACAAGATTT+GGG - Chr7:79783346-79783365 None:intergenic 25.0%
! GATGATACTTTAAATATGCA+TGG - Chr7:79786350-79786369 None:intergenic 25.0%
! GATTGGAAAGAAAAAAAGAA+TGG + Chr7:79785822-79785841 MsG0780040599.01.T01:intron 25.0%
! TACATGGGAAAAGTTTATTA+CGG - Chr7:79786026-79786045 None:intergenic 25.0%
! TGAATCAAGTATACAAGATT+TGG - Chr7:79783347-79783366 None:intergenic 25.0%
! TGTTTGTGTATGATATAACA+AGG + Chr7:79784233-79784252 MsG0780040599.01.T01:intron 25.0%
! TTAGAAGTTACAAACAAAGT+GGG - Chr7:79784100-79784119 None:intergenic 25.0%
!! AGTAAAACATCCTTTTACTT+TGG + Chr7:79784758-79784777 MsG0780040599.01.T01:intron 25.0%
!! AGTTAACTGAATTATTTTCC+TGG - Chr7:79785554-79785573 None:intergenic 25.0%
!! ATATCGATGTTTTCTCAATA+GGG + Chr7:79786521-79786540 MsG0780040599.01.T01:intron 25.0%
!! CCTTGAATACAATTATTTCT+AGG + Chr7:79785392-79785411 MsG0780040599.01.T01:intron 25.0%
!! GATTTAGAACTCATTTGTTT+AGG - Chr7:79785073-79785092 None:intergenic 25.0%
!! GCTATCACTATTTAAAATCT+TGG - Chr7:79784667-79784686 None:intergenic 25.0%
!! GTATTTTCAAATGAAATGTG+AGG - Chr7:79783535-79783554 None:intergenic 25.0%
!! TGGTAAGTTCTCTATATTTT+GGG + Chr7:79786471-79786490 MsG0780040599.01.T01:intron 25.0%
!!! AAAAAAGAAGCATCTTACAA+CGG - Chr7:79784342-79784361 None:intergenic 25.0%
!!! TTCTAAGTTCTGAATCTTTA+TGG - Chr7:79786083-79786102 None:intergenic 25.0%
AAAAAAATGTACAATGCAGG+TGG + Chr7:79786544-79786563 MsG0780040599.01.T01:intron 30.0%
AAATATAGAGAACTTACCAG+GGG - Chr7:79786470-79786489 None:intergenic 30.0%
AATCAAGATAAGCTCTACAT+GGG - Chr7:79786041-79786060 None:intergenic 30.0%
ACAAAAATCACAAGCATATG+AGG - Chr7:79784840-79784859 None:intergenic 30.0%
ATAGTAAAAGTTTACGGAGA+CGG - Chr7:79784040-79784059 None:intergenic 30.0%
ATTGAGTATTTACCGCAAAT+GGG - Chr7:79784613-79784632 None:intergenic 30.0%
ATTTAACTCTTGCTTCAAGA+GGG - Chr7:79785322-79785341 None:intergenic 30.0%
CAAAATATAGAGAACTTACC+AGG - Chr7:79786472-79786491 None:intergenic 30.0%
GAACTCATTTGTTTAGGAAT+CGG - Chr7:79785067-79785086 None:intergenic 30.0%
GCATATGTTTATCTTTGCTA+TGG + Chr7:79784514-79784533 MsG0780040599.01.T01:CDS 30.0%
GCATGTAAAATCATAAAACG+TGG - Chr7:79785927-79785946 None:intergenic 30.0%
GCTATCTATAGCAAATAAGT+TGG + Chr7:79783919-79783938 MsG0780040599.01.T01:intron 30.0%
GTAATATTCAACAATGTCAC+AGG + Chr7:79785423-79785442 MsG0780040599.01.T01:intron 30.0%
GTGGAAAAAATTCCATAGAA+AGG + Chr7:79786220-79786239 MsG0780040599.01.T01:intron 30.0%
GTTGATCACAATTATTACAC+TGG + Chr7:79786186-79786205 MsG0780040599.01.T01:intron 30.0%
TAATCAAGATAAGCTCTACA+TGG - Chr7:79786042-79786061 None:intergenic 30.0%
TATTGAGTATTTACCGCAAA+TGG - Chr7:79784614-79784633 None:intergenic 30.0%
TCAAAACATGTCTGATATCA+AGG - Chr7:79783698-79783717 None:intergenic 30.0%
TGACAAACCTATACTTCTTA+CGG + Chr7:79785482-79785501 MsG0780040599.01.T01:CDS 30.0%
TGGAAATAACATATAGTTGC+TGG + Chr7:79785211-79785230 MsG0780040599.01.T01:intron 30.0%
! AACTGACTTATCTATCGAAA+AGG - Chr7:79783671-79783690 None:intergenic 30.0%
! ACAAGGAATTAATTTTGGAC+AGG + Chr7:79784250-79784269 MsG0780040599.01.T01:intron 30.0%
! ACATTCAGGTTAATCAGTTT+AGG - Chr7:79786380-79786399 None:intergenic 30.0%
! ACTGACTTATCTATCGAAAA+GGG - Chr7:79783670-79783689 None:intergenic 30.0%
! AGTATTGTAGTCTTTTGCTA+GGG - Chr7:79785348-79785367 None:intergenic 30.0%
! CTGGTAAGTTCTCTATATTT+TGG + Chr7:79786470-79786489 MsG0780040599.01.T01:intron 30.0%
! GATAGTAAAGCACTAAAATG+TGG - Chr7:79785619-79785638 None:intergenic 30.0%
! GATATCGATGTTTTCTCAAT+AGG + Chr7:79786520-79786539 MsG0780040599.01.T01:intron 30.0%
! TACATAAGCTTGTTCATGAT+GGG + Chr7:79784381-79784400 MsG0780040599.01.T01:intron 30.0%
! TCCAAAATTTTGCCAAGAAA+GGG - Chr7:79785800-79785819 None:intergenic 30.0%
! TTACATAAGCTTGTTCATGA+TGG + Chr7:79784380-79784399 MsG0780040599.01.T01:intron 30.0%
!! AAAAAGAAGCATCTTACAAC+GGG - Chr7:79784341-79784360 None:intergenic 30.0%
!! AATAAGTTGGTTATCCAAAC+AGG + Chr7:79783932-79783951 MsG0780040599.01.T01:intron 30.0%
!! ATAAGTTGGTTATCCAAACA+GGG + Chr7:79783933-79783952 MsG0780040599.01.T01:intron 30.0%
!! CTCAACAGTTTCTTAGTTTT+AGG + Chr7:79784166-79784185 MsG0780040599.01.T01:intron 30.0%
!! TGTGTCACTTATTCAGTTTA+TGG + Chr7:79784857-79784876 MsG0780040599.01.T01:intron 30.0%
AATGTTGTTGCTGATAAGGA+AGG + Chr7:79784553-79784572 MsG0780040599.01.T01:CDS 35.0%
ACCTGGACTATTTGAAAAGT+TGG + Chr7:79785133-79785152 MsG0780040599.01.T01:intron 35.0%
AGCTGATAATCACAAGTCAA+TGG - Chr7:79785587-79785606 None:intergenic 35.0%
ATGAGGACACATAATTTAGC+AGG - Chr7:79784823-79784842 None:intergenic 35.0%
ATTCAACAATGTCACAGGAT+TGG + Chr7:79785428-79785447 MsG0780040599.01.T01:intron 35.0%
ATTTCAGACAGGTGAAAAGA+GGG - Chr7:79785526-79785545 None:intergenic 35.0%
CTATTTGAAAAGTTGGAAGC+TGG + Chr7:79785140-79785159 MsG0780040599.01.T01:intron 35.0%
GAAAAGTTTATTACGGAGAG+TGG - Chr7:79786019-79786038 None:intergenic 35.0%
GACAAACCTATACTTCTTAC+GGG + Chr7:79785483-79785502 MsG0780040599.01.T01:CDS 35.0%
GATTTAACTCTTGCTTCAAG+AGG - Chr7:79785323-79785342 None:intergenic 35.0%
GGGAAAAAAATGTACAATGC+AGG + Chr7:79786541-79786560 MsG0780040599.01.T01:intron 35.0%
TAAGATTGACGAAGACATTC+AGG - Chr7:79786394-79786413 None:intergenic 35.0%
TGAATGTCTTCGTCAATCTT+AGG + Chr7:79786393-79786412 MsG0780040599.01.T01:intron 35.0%
TGAGGACACATAATTTAGCA+GGG - Chr7:79784822-79784841 None:intergenic 35.0%
TTGAGTATTTACCGCAAATG+GGG - Chr7:79784612-79784631 None:intergenic 35.0%
TTGGAAGCTGGTTAACTAAT+TGG + Chr7:79785152-79785171 MsG0780040599.01.T01:intron 35.0%
TTGTCATGTTGCTATGTATC+TGG + Chr7:79784460-79784479 MsG0780040599.01.T01:intron 35.0%
! AATTGGAAAGTTGAGCCTTT+TGG + Chr7:79785169-79785188 MsG0780040599.01.T01:intron 35.0%
! ACAAACAAAGTGGGTTTACA+TGG - Chr7:79784091-79784110 None:intergenic 35.0%
! ATCTGTTTTGTCAGACTTGT+TGG + Chr7:79783735-79783754 MsG0780040599.01.T01:intron 35.0%
! ATTCTCGACATTCTGCATTT+TGG + Chr7:79784983-79785002 MsG0780040599.01.T01:intron 35.0%
! GTCCAAAATTTTGCCAAGAA+AGG - Chr7:79785801-79785820 None:intergenic 35.0%
! TCCAACTTTTCAAATAGTCC+AGG - Chr7:79785137-79785156 None:intergenic 35.0%
! TCCCTTTCTTGGCAAAATTT+TGG + Chr7:79785796-79785815 MsG0780040599.01.T01:intron 35.0%
! TGGCAAAATTTTGGACAGAT+TGG + Chr7:79785805-79785824 MsG0780040599.01.T01:intron 35.0%
!! GAGTATTGTAGTCTTTTGCT+AGG - Chr7:79785349-79785368 None:intergenic 35.0%
!! TATTTTGGATGTGTACAACC+TGG + Chr7:79785116-79785135 MsG0780040599.01.T01:intron 35.0%
!! TCTGTTTTGTCAGACTTGTT+GGG + Chr7:79783736-79783755 MsG0780040599.01.T01:intron 35.0%
!!! GTTTGTCAGTTTTTTGACCT+CGG - Chr7:79785470-79785489 None:intergenic 35.0%
AATAAGGTCTGCGATCTTAG+CGG - Chr7:79784715-79784734 None:intergenic 40.0%
AATCATCCACTATATACCCC+TGG + Chr7:79786451-79786470 MsG0780040599.01.T01:CDS 40.0%
AATCCAAGCAGAATCTGCAA+TGG - Chr7:79786674-79786693 None:intergenic 40.0%
AATGCTGAACTTGCACCAAA+AGG - Chr7:79785187-79785206 None:intergenic 40.0%
AGAAAGGGACAAGACTTATG+AGG - Chr7:79785785-79785804 None:intergenic 40.0%
CAACAACATTCAGCATTGTG+TGG - Chr7:79784543-79784562 None:intergenic 40.0%
CACATAATTTAGCAGGGTAG+CGG - Chr7:79784816-79784835 None:intergenic 40.0%
CACTAGGTCTTTCAACAGAA+TGG + Chr7:79786425-79786444 MsG0780040599.01.T01:CDS 40.0%
CATTTCAGACAGGTGAAAAG+AGG - Chr7:79785527-79785546 None:intergenic 40.0%
CCCGGATACGAAATATGATA+CGG - Chr7:79785762-79785781 None:intergenic 40.0%
CCCGTATCATATTTCGTATC+CGG + Chr7:79785758-79785777 MsG0780040599.01.T01:intron 40.0%
CCGGATACGAAATATGATAC+GGG - Chr7:79785761-79785780 None:intergenic 40.0%
CCGTATCATATTTCGTATCC+GGG + Chr7:79785759-79785778 MsG0780040599.01.T01:intron 40.0%
GAGCCAGAAAACATATTGGT+AGG + Chr7:79786589-79786608 MsG0780040599.01.T01:CDS 40.0%
GCTGAATGTTGTTGCTGATA+AGG + Chr7:79784549-79784568 MsG0780040599.01.T01:CDS 40.0%
GTAGGCAAGACCAAAGTAAA+AGG - Chr7:79784771-79784790 None:intergenic 40.0%
TATCGAAAAGGGCAATACCT+CGG - Chr7:79783659-79783678 None:intergenic 40.0%
TCAAATGACTCAGCTAGTCA+TGG + Chr7:79784287-79784306 MsG0780040599.01.T01:CDS 40.0%
TCCAGAGCCAGAAAACATAT+TGG + Chr7:79786585-79786604 MsG0780040599.01.T01:CDS 40.0%
TGAGTATTTACCGCAAATGG+GGG - Chr7:79784611-79784630 None:intergenic 40.0%
TGTCTTCGTCAATCTTAGGT+TGG + Chr7:79786397-79786416 MsG0780040599.01.T01:intron 40.0%
! AACTTACCAGGGGTATATAG+TGG - Chr7:79786460-79786479 None:intergenic 40.0%
! ATGTGAGGTTCTGATGATGA+TGG - Chr7:79783520-79783539 None:intergenic 40.0%
! CATAAGTCTTGTCCCTTTCT+TGG + Chr7:79785785-79785804 MsG0780040599.01.T01:intron 40.0%
! GGACCTACCAATATGTTTTC+TGG - Chr7:79786595-79786614 None:intergenic 40.0%
! TGTGAGGTTCTGATGATGAT+GGG - Chr7:79783519-79783538 None:intergenic 40.0%
!! AGGGGTATATAGTGGATGAT+TGG - Chr7:79786452-79786471 None:intergenic 40.0%
!!! ACCAATATGTTTTCTGGCTC+TGG - Chr7:79786589-79786608 None:intergenic 40.0%
!!! TCTGGTCTTGTTTTGCAGTT+TGG + Chr7:79784478-79784497 MsG0780040599.01.T01:intron 40.0%
!!! TGGTTTTGGGGTCATTACAA+CGG - Chr7:79783389-79783408 None:intergenic 40.0%
AAACTTCCCAAGCAAACGAG+GGG - Chr7:79783605-79783624 None:intergenic 45.0%
AAGTCAAACATTGCGCGTGA+TGG + Chr7:79786110-79786129 MsG0780040599.01.T01:intron 45.0%
AGAAACTTCCCAAGCAAACG+AGG - Chr7:79783607-79783626 None:intergenic 45.0%
ATATTGGTAGGTCCACGTGT+TGG + Chr7:79786601-79786620 MsG0780040599.01.T01:CDS 45.0%
ATGACTCAGCTAGTCATGGT+CGG + Chr7:79784291-79784310 MsG0780040599.01.T01:CDS 45.0%
CATGAGACAATGACCCTGTT+TGG - Chr7:79783949-79783968 None:intergenic 45.0%
CGGTAATCTGAAGAACAACG+TGG - Chr7:79783639-79783658 None:intergenic 45.0%
CGTTGTTCTTCAGATTACCG+AGG + Chr7:79783639-79783658 MsG0780040599.01.T01:CDS 45.0%
GAAACTTCCCAAGCAAACGA+GGG - Chr7:79783606-79783625 None:intergenic 45.0%
GGTGGTGTAGAACTCTTAGA+TGG + Chr7:79786562-79786581 MsG0780040599.01.T01:intron 45.0%
GTTGCTGATAAGGAAGGAGT+TGG + Chr7:79784559-79784578 MsG0780040599.01.T01:CDS 45.0%
TAAACATATGCATGCCCACC+TGG - Chr7:79784505-79784524 None:intergenic 45.0%
TTGCCATTGCAGATTCTGCT+TGG + Chr7:79786668-79786687 MsG0780040599.01.T01:CDS 45.0%
! ACCTGTCTGAAATGCTTTCC+AGG + Chr7:79785533-79785552 MsG0780040599.01.T01:intron 45.0%
! TCGATTTGAAAGAACTCGCG+TGG - Chr7:79783568-79783587 None:intergenic 45.0%
! TTTTGCAGTTTGGACCAGGT+GGG + Chr7:79784488-79784507 MsG0780040599.01.T01:intron 45.0%
!! TACACTGGTTCTTGCTAGAG+TGG + Chr7:79786201-79786220 MsG0780040599.01.T01:intron 45.0%
!! TCATTACAACGGTGCTGCTA+TGG - Chr7:79783378-79783397 None:intergenic 45.0%
!! TCCTGGAAAGCATTTCAGAC+AGG - Chr7:79785537-79785556 None:intergenic 45.0%
!! TCGTCAATCTTAGGTTGGTC+AGG + Chr7:79786402-79786421 MsG0780040599.01.T01:intron 45.0%
!! TGTCAGACTTGTTGGGACTT+GGG + Chr7:79783743-79783762 MsG0780040599.01.T01:intron 45.0%
!! TTGTCAGACTTGTTGGGACT+TGG + Chr7:79783742-79783761 MsG0780040599.01.T01:intron 45.0%
!!! CTTGAAGCGTTGTGGTTTTG+GGG - Chr7:79783401-79783420 None:intergenic 45.0%
!!! CTTGTTTTGCAGTTTGGACC+AGG + Chr7:79784484-79784503 MsG0780040599.01.T01:intron 45.0%
!!! GCTTGAAGCGTTGTGGTTTT+GGG - Chr7:79783402-79783421 None:intergenic 45.0%
!! TTAAATAAAAAATAAAAAGT+AGG - Chr7:79784789-79784808 None:intergenic 5.0%
CTATACTTCTTACGGGCCCT+GGG + Chr7:79785490-79785509 MsG0780040599.01.T01:CDS 50.0%
CTTACAACGGGAGCAGTTCT+TGG - Chr7:79784329-79784348 None:intergenic 50.0%
GACGGTGAGGTTGAGTGATT+TGG - Chr7:79783485-79783504 None:intergenic 50.0%
GATAAGGAAGGAGTTGGAGC+TGG + Chr7:79784565-79784584 MsG0780040599.01.T01:CDS 50.0%
GCGAATTGGATTCCAACACG+TGG - Chr7:79786616-79786635 None:intergenic 50.0%
GTGCAAGTTCAGCATTGCTG+TGG + Chr7:79785191-79785210 MsG0780040599.01.T01:intron 50.0%
GTGCTCCAAGAAACACTCTC+AGG + Chr7:79786695-79786714 MsG0780040599.01.T01:CDS 50.0%
TCAGCTAGTCATGGTCGGTT+TGG + Chr7:79784296-79784315 MsG0780040599.01.T01:CDS 50.0%
TGAAAGAACTCGCGTGGCAA+AGG - Chr7:79783562-79783581 None:intergenic 50.0%
TGGAGAGTGGAGTATGGGTT+TGG - Chr7:79783431-79783450 None:intergenic 50.0%
! ACTTGATTCGCGCTCGAATG+TGG - Chr7:79783323-79783342 None:intergenic 50.0%
! GTTGGTGGAGAGTGGAGTAT+GGG - Chr7:79783436-79783455 None:intergenic 50.0%
! GTTTTGCAGTTTGGACCAGG+TGG + Chr7:79784487-79784506 MsG0780040599.01.T01:intron 50.0%
!! CAACGGTGCTGCTATGGTAA+CGG - Chr7:79783372-79783391 None:intergenic 50.0%
!! TCTTAGGTTGGTCAGGCACT+AGG + Chr7:79786409-79786428 MsG0780040599.01.T01:intron 50.0%
!! TGATGGGTTGAGTTCAGCGA+CGG - Chr7:79783503-79783522 None:intergenic 50.0%
!!! CGCTTGAAGCGTTGTGGTTT+TGG - Chr7:79783403-79783422 None:intergenic 50.0%
AAGAGGGAACTGACCTTCCC+AGG - Chr7:79785510-79785529 None:intergenic 55.0%
ACCTTGCCCCTCGTTTGCTT+GGG + Chr7:79783596-79783615 MsG0780040599.01.T01:CDS 55.0%
AGAGGGAACTGACCTTCCCA+GGG - Chr7:79785509-79785528 None:intergenic 55.0%
CATGCTCTGGCAGAGCGAAT+TGG - Chr7:79786630-79786649 None:intergenic 55.0%
CCTATACTTCTTACGGGCCC+TGG + Chr7:79785489-79785508 MsG0780040599.01.T01:CDS 55.0%
CGATCTTAGCGGAGACATCG+AGG - Chr7:79784704-79784723 None:intergenic 55.0%
CGTTCTTGTGCCCCCATTTG+CGG + Chr7:79784598-79784617 MsG0780040599.01.T01:CDS 55.0%
GATGTTATTCAGCAGCGCCG+AGG + Chr7:79785450-79785469 MsG0780040599.01.T01:CDS 55.0%
GATTCGCGCTCGAATGTGGT+GGG - Chr7:79783319-79783338 None:intergenic 55.0%
GGGACAAGACTTATGAGGCC+CGG - Chr7:79785780-79785799 None:intergenic 55.0%
TGATTCGCGCTCGAATGTGG+TGG - Chr7:79783320-79783339 None:intergenic 55.0%
! AATGTGGTGGGAGTGGAACC+AGG - Chr7:79783307-79783326 None:intergenic 55.0%
! CCAGGGCCCGTAAGAAGTAT+AGG - Chr7:79785492-79785511 None:intergenic 55.0%
! TTGGAACGTCGCGTTTTGCG+AGG - Chr7:79783466-79783485 None:intergenic 55.0%
!! GCGATTCGCTTGAAGCGTTG+TGG - Chr7:79783409-79783428 None:intergenic 55.0%
!! GGTGGCCTGAGAGTGTTTCT+TGG - Chr7:79786703-79786722 None:intergenic 55.0%
!! GGTTGGTGGAGAGTGGAGTA+TGG - Chr7:79783437-79783456 None:intergenic 55.0%
!!! GTTTTGCGAGGCGGTTTGGT+TGG - Chr7:79783454-79783473 None:intergenic 55.0%
ACTTCTTACGGGCCCTGGGA+AGG + Chr7:79785494-79785513 MsG0780040599.01.T01:CDS 60.0%
CAGAGCATGTCGACGCACTG+TGG + Chr7:79786641-79786660 MsG0780040599.01.T01:CDS 60.0%
GACCTTGCCCCTCGTTTGCT+TGG + Chr7:79783595-79783614 MsG0780040599.01.T01:CDS 60.0%
GGTTGAGTTCAGCGACGGTG+AGG - Chr7:79783498-79783517 None:intergenic 60.0%
TCCCAAGCAAACGAGGGGCA+AGG - Chr7:79783600-79783619 None:intergenic 60.0%
TGGTGGGAGTGGAACCAGGA+GGG - Chr7:79783303-79783322 None:intergenic 60.0%
! CACAGTGCGTCGACATGCTC+TGG - Chr7:79786643-79786662 None:intergenic 60.0%
! GAACGTCGCGTTTTGCGAGG+CGG - Chr7:79783463-79783482 None:intergenic 60.0%
! TCGCGTTTTGCGAGGCGGTT+TGG - Chr7:79783458-79783477 None:intergenic 60.0%
!! GCGGTTTGGTTGGTGGAGAG+TGG - Chr7:79783444-79783463 None:intergenic 60.0%
!! TTGCGAGGCGGTTTGGTTGG+TGG - Chr7:79783451-79783470 None:intergenic 60.0%
! GCGCTCGAATGTGGTGGGAG+TGG - Chr7:79783314-79783333 None:intergenic 65.0%
! GTGGTGGGAGTGGAACCAGG+AGG - Chr7:79783304-79783323 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 79783292 79786729 79783292 ID=MsG0780040599.01;Name=MsG0780040599.01
Chr7 mRNA 79783292 79786729 79783292 ID=MsG0780040599.01.T01;Parent=MsG0780040599.01;Name=MsG0780040599.01.T01;_AED=0.44;_eAED=0.45;_QI=0|0|0|1|1|1|6|0|286
Chr7 exon 79783292 79783660 79783292 ID=MsG0780040599.01.T01:exon:16573;Parent=MsG0780040599.01.T01
Chr7 exon 79784272 79784343 79784272 ID=MsG0780040599.01.T01:exon:16574;Parent=MsG0780040599.01.T01
Chr7 exon 79784496 79784619 79784496 ID=MsG0780040599.01.T01:exon:16575;Parent=MsG0780040599.01.T01
Chr7 exon 79785445 79785515 79785445 ID=MsG0780040599.01.T01:exon:16576;Parent=MsG0780040599.01.T01
Chr7 exon 79786415 79786472 79786415 ID=MsG0780040599.01.T01:exon:16577;Parent=MsG0780040599.01.T01
Chr7 exon 79786563 79786729 79786563 ID=MsG0780040599.01.T01:exon:16578;Parent=MsG0780040599.01.T01
Chr7 CDS 79783292 79783660 79783292 ID=MsG0780040599.01.T01:cds;Parent=MsG0780040599.01.T01
Chr7 CDS 79784272 79784343 79784272 ID=MsG0780040599.01.T01:cds;Parent=MsG0780040599.01.T01
Chr7 CDS 79784496 79784619 79784496 ID=MsG0780040599.01.T01:cds;Parent=MsG0780040599.01.T01
Chr7 CDS 79785445 79785515 79785445 ID=MsG0780040599.01.T01:cds;Parent=MsG0780040599.01.T01
Chr7 CDS 79786415 79786472 79786415 ID=MsG0780040599.01.T01:cds;Parent=MsG0780040599.01.T01
Chr7 CDS 79786563 79786729 79786563 ID=MsG0780040599.01.T01:cds;Parent=MsG0780040599.01.T01
Gene Sequence

>MsG0780040599.01.T01

ATGTCTTTCCCTCCTGGTTCCACTCCCACCACATTCGAGCGCGAATCAAGTCCCAAATCTTGTATACTTGATTCATTCCGTTACCATAGCAGCACCGTTGTAATGACCCCAAAACCACAACGCTTCAAGCGAATCGCCAAACCCATACTCCACTCTCCACCAACCAAACCGCCTCGCAAAACGCGACGTTCCAAATCACTCAACCTCACCGTCGCTGAACTCAACCCATCATCATCAGAACCTCACATTTCATTTGAAAATACAAAACCTTTGCCACGCGAGTTCTTTCAAATCGATGCACTAGACCTTGCCCCTCGTTTGCTTGGGAAGTTTCTTCGTAGAGACCACGTTGTTCTTCAGATTACCGAGGTTGAAGCATATAGATCAAATGACTCAGCTAGTCATGGTCGGTTTGGTATTACTCCAAGAACTGCTCCCGTTTTTGGACCAGGTGGGCATGCATATGTTTATCTTTGCTATGGTCTCCACACAATGCTGAATGTTGTTGCTGATAAGGAAGGAGTTGGAGCTGGTGTTTTGATACGTTCTTGTGCCCCCATTTGCGGATTGGATGTTATTCAGCAGCGCCGAGGTCAAAAAACTGACAAACCTATACTTCTTACGGGCCCTGGGAAGGTTGGTCAGGCACTAGGTCTTTCAACAGAATGGTCCAATCATCCACTATATACCCCTGGTGGTGTAGAACTCTTAGATGGTCCAGAGCCAGAAAACATATTGGTAGGTCCACGTGTTGGAATCCAATTCGCTCTGCCAGAGCATGTCGACGCACTGTGGAGATTTGCCATTGCAGATTCTGCTTGGATTAGTGCTCCAAGAAACACTCTCAGGCCACCCTTATAG
Protein sequence

>MsG0780040599.01.T01

MSFPPGSTPTTFERESSPKSCILDSFRYHSSTVVMTPKPQRFKRIAKPILHSPPTKPPRKTRRSKSLNLTVAELNPSSSEPHISFENTKPLPREFFQIDALDLAPRLLGKFLRRDHVVLQITEVEAYRSNDSASHGRFGITPRTAPVFGPGGHAYVYLCYGLHTMLNVVADKEGVGAGVLIRSCAPICGLDVIQQRRGQKTDKPILLTGPGKVGQALGLSTEWSNHPLYTPGGVELLDGPEPENILVGPRVGIQFALPEHVDALWRFAIADSAWISAPRNTLRPPL*