AlfalfaGEDB | MsG0080048809.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048809.01

KEGG: -
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412
PFAM: PF00861

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048809.01.T01	XP_003592709.1	98.246	114	2	0	1	114	1	114	1.02E-73	224

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048809.01.T01	A8IAP8	43.396	106	58	2	8	113	17	120	6.68E-16	70.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048809.01.T01	G7IE75	98.246	114	2	0	1	114	1	114	4.89e-74	224

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048532.01	MsG0080048809.01	0.809701	1.661304e-50	9.822578e-48
MsG0080048809.01	MsG0080048901.01	0.840494	8.409068e-58	1.199909e-54
MsG0080048809.01	MsG0080048982.01	-0.813361	2.661167e-51	1.734299e-48
MsG0080048809.01	MsG0180000116.01	-0.819901	9.102510e-53	7.095958e-50
MsG0080048809.01	MsG0180000240.01	0.801198	1.008016e-48	4.784905e-46
MsG0080048809.01	MsG0180001312.01	-0.838205	3.301929e-57	4.391055e-54
MsG0080048809.01	MsG0180001663.01	-0.804775	1.837073e-49	9.555014e-47
MsG0080048809.01	MsG0180001842.01	-0.805503	1.293474e-49	6.854455e-47
MsG0080048809.01	MsG0180002140.01	-0.804578	2.020095e-49	1.045312e-46
MsG0080048809.01	MsG0180002586.01	-0.810712	1.005539e-50	6.105963e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048809.01.T01	MTR_1g114200	98.246	114	2	1	114	1	114	1.24e-77	224
MsG0080048809.01.T01	MTR_4g032660	33.663	101	67	11	111	96	196	1.27e-16	72.0
MsG0080048809.01.T01	MTR_5g023360	68.750	48	15	1	48	46	93	1.13e-15	67.0
MsG0080048809.01.T01	MTR_3g012540	29.126	103	73	11	113	80	182	4.08e-13	62.8
MsG0080048809.01.T01	MTR_5g023330	71.875	32	9	1	32	88	119	1.17e-11	58.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048809.01.T01	AT5G27820	79.825	114	23	0	1	114	1	114	4.31e-65	192
MsG0080048809.01.T01	AT3G20230	35.644	101	65	0	11	111	83	183	9.22e-19	77.4
MsG0080048809.01.T01	AT3G45020	36.937	111	58	4	16	114	4	114	3.51e-13	61.6
MsG0080048809.01.T01	AT3G45020	36.937	111	58	4	16	114	4	114	3.51e-13	61.6
MsG0080048809.01.T01	AT3G45020	36.937	111	58	4	16	114	4	114	3.51e-13	61.6
MsG0080048809.01.T01	AT3G45020	36.937	111	58	4	16	114	4	114	3.51e-13	61.6
MsG0080048809.01.T01	AT1G08845	27.184	103	75	0	11	113	82	184	1.94e-12	60.8
MsG0080048809.01.T01	AT1G08845	27.184	103	75	0	11	113	82	184	1.94e-12	60.8
MsG0080048809.01.T01	AT1G08845	27.184	103	75	0	11	113	127	229	2.68e-12	61.2

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Find 58 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTGGGAAGCTACTAG+CGG	0.716694	contig455end:-20155	MsG0080048809.01.T01:CDS
AAATGCATCTTAAGAACATA+AGG	0.422008	contig455end:+20304	MsG0080048809.01.T01:intergenic
AAGAGAGAACAGAGGTATCA+TGG	0.461247	contig455end:-20088	MsG0080048809.01.T01:CDS
AAGCGGTTATTGATTCTCTC+AGG	0.400454	contig455end:-20057	MsG0080048809.01.T01:CDS
AAGGGAGTGGCTGACCGGAG+TGG	0.568568	contig455end:+21687	MsG0080048809.01.T01:intergenic
ACCTTTGATCACTCGTTCGC+AGG	0.465646	contig455end:+19952	MsG0080048809.01.T01:intergenic
ACGGCGAGAAAGGAACGGGA+TGG	0.594078	contig455end:+21663	MsG0080048809.01.T01:intergenic
AGAAAGGAACGGGATGGGAA+GGG	0.556403	contig455end:+21669	MsG0080048809.01.T01:intergenic
AGAACAGAGGTATCATGGAA+AGG	0.588862	contig455end:-20083	MsG0080048809.01.T01:CDS
AGATATTGTGCAAGTCTGGG+AGG	0.647235	contig455end:+20331	MsG0080048809.01.T01:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAATGCTTGAGTTTAG+AGG	-	contig455end:20771-20790	MsG0080048809.01.T01:intron	30.0%
ATGTTACGATATTCTGATAC+AGG	-	contig455end:20366-20385	MsG0080048809.01.T01:intron	30.0%
CTATGTTTCTCTTATAGATC+AGG	-	contig455end:20678-20697	MsG0080048809.01.T01:intron	30.0%
GATCACATATTAGTAATCCA+AGG	+	contig455end:20800-20819	MsG0080048809.01.T01:intergenic	30.0%
TCTCTAATATGCAGAAAGAT+TGG	+	contig455end:20443-20462	MsG0080048809.01.T01:intergenic	30.0%
TCTTATAGATCAGGACATAA+TGG	-	contig455end:20687-20706	MsG0080048809.01.T01:intron	30.0%
TCTTGTTCATTATTGTACAC+AGG	+	contig455end:20396-20415	MsG0080048809.01.T01:intergenic	30.0%
AAAAAGGGGATGCTATGTAT+TGG	+	contig455end:20079-20098	MsG0080048808.01.T01:intergenic	35.0%
AAAAATTACATGAGCAGCTC+AGG	+	contig455end:21635-21654	MsG0080048808.01.T01:intergenic	35.0%
AAATACAAATCTCAGAGCAG+AGG	+	contig455end:19906-19925	MsG0080048809.01.T01:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
contig455end	gene	19785	21759	19785	ID=MsG0080048809.01;Name=MsG0080048809.01
contig455end	mRNA	19785	21759	19785	ID=MsG0080048809.01.T01;Parent=MsG0080048809.01;Name=MsG0080048809.01.T01;_AED=0.46;_eAED=0.46;_QI=106\|0\|0.5\|1\|0\|0.5\|2\|248\|114
contig455end	exon	21654	21759	21654	ID=MsG0080048809.01.T01:exon:10174;Parent=MsG0080048809.01.T01
contig455end	exon	19785	20377	19785	ID=MsG0080048809.01.T01:exon:10175;Parent=MsG0080048809.01.T01
contig455end	five_prime_UTR	21654	21759	21654	ID=MsG0080048809.01.T01:five_prime_utr;Parent=MsG0080048809.01.T01
contig455end	CDS	20033	20377	20033	ID=MsG0080048809.01.T01:cds;Parent=MsG0080048809.01.T01
contig455end	three_prime_UTR	19785	20032	19785	ID=MsG0080048809.01.T01:three_prime_utr;Parent=MsG0080048809.01.T01

Gene Sequence	>MsG0080048809.01.T01 ATGGTTATCCCACCTCCAGTCAGGCCTCCCAGACTTGCACAATATCTGAAACCTTATGTTCTTAAGATGCATTTCACAAATAAGTATGTGAGTGCTCAAGTGATCCACACTCCAACTGCTACCGTTGCCTCTTCTGCAAGCTCACAGGAGAAAGCCTTGAGATCAAGCCTGGAAACTACTCGGGATGTTGCTGCAGCTGCAAAGATTGGGAAGCTACTAGCGGAACGCCTTTCGCTCAAGGACATTCCTGCTGTTTCTGTTCACTTGAAGAGAGAACAGAGGTATCATGGAAAGGTAAAAGCGGTTATTGATTCTCTCAGGGAAGCTGGTGTTAAGTTGCTTTGA
Protein sequence	>MsG0080048809.01.T01 MVIPPPVRPPRLAQYLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETTRDVAAAAKIGKLLAERLSLKDIPAVSVHLKREQRYHGKVKAVIDSLREAGVKLL*