AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040721.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040721.01.T02 MTR_7g096640 96.471 85 3 0 46 130 62 146 2.70e-52 163
MsG0780040721.01.T02 MTR_1g070190 75.652 115 22 3 32 141 43 156 2.42e-50 158
MsG0780040721.01.T02 MTR_1g073940 62.105 95 36 0 46 140 65 159 2.47e-33 115
MsG0780040721.01.T02 MTR_1g073940 64.835 91 32 0 50 140 84 174 7.18e-33 114
MsG0780040721.01.T02 MTR_7g096640 69.388 49 11 2 43 87 57 105 2.60e-11 57.4
MsG0780040721.01.T01 MTR_7g096640 96.815 157 5 0 1 157 1 157 5.38e-107 302
MsG0780040721.01.T01 MTR_1g070190 79.618 157 31 1 1 157 1 156 9.91e-88 253
MsG0780040721.01.T01 MTR_7g096640 87.619 105 11 1 1 103 1 105 2.14e-58 177
MsG0780040721.01.T01 MTR_1g073940 54.430 158 69 1 1 155 1 158 2.86e-52 164
MsG0780040721.01.T01 MTR_1g073940 46.000 150 78 1 9 155 24 173 6.07e-40 133
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040721.01.T02 AT4G14420 67.708 96 30 1 46 140 62 157 1.47e-30 108
MsG0780040721.01.T02 AT5G43460 50.000 104 44 2 41 136 51 154 9.74e-28 100
MsG0780040721.01.T02 AT5G43460 50.000 104 44 2 41 136 51 154 9.74e-28 100
MsG0780040721.01.T02 AT1G04340 48.485 99 44 1 45 136 61 159 5.34e-27 99.0
MsG0780040721.01.T02 AT3G23190 45.312 64 35 0 45 108 61 124 4.62e-11 58.5
MsG0780040721.01.T01 AT4G14420 64.331 157 55 1 1 156 1 157 4.47e-61 186
MsG0780040721.01.T01 AT1G04340 53.165 158 72 1 1 156 1 158 9.31e-53 165
MsG0780040721.01.T01 AT5G43460 52.866 157 69 2 1 156 1 153 5.42e-50 157
MsG0780040721.01.T01 AT5G43460 52.866 157 69 2 1 156 1 153 5.42e-50 157
MsG0780040721.01.T01 AT3G23190 42.735 117 50 3 8 124 25 124 3.75e-19 80.9
MsG0780040721.01.T01 AT3G23180 33.051 118 66 2 7 124 24 128 3.67e-13 64.7
MsG0780040721.01.T01 AT3G23180 33.051 118 66 2 7 124 24 128 3.67e-13 64.7
MsG0780040721.01.T01 AT3G23175 29.114 158 92 4 5 155 24 168 4.98e-12 60.8

Find 22 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCTCTCTTTCTCTTCAA+TGG 0.257527 7:+81613576 MsG0780040721.01.T01:exon
GAGAGACTAACATCAATTTC+TGG 0.293736 7:-81614675 None:intergenic
TGAAGAGAAAGAGAGAATCT+AGG 0.364056 7:-81613572 None:intergenic
TCTCACAGATTTAATGACTA+TGG 0.364386 7:+81614564 MsG0780040721.01.T01:intron
TTTAATGACTATGGAGTTGA+TGG 0.390244 7:+81614573 MsG0780040721.01.T01:CDS
CTCTATCTCATCTCTCTGAC+CGG 0.407549 7:+81613514 None:intergenic
TGAATCTACTTTGTGTAAGA+AGG 0.424918 7:-81614634 None:intergenic
TGTAAGAAGGCATCAAACTT+TGG 0.456330 7:-81614621 None:intergenic
CACAAAGTAGATTCACAAGT+TGG 0.457902 7:+81614642 MsG0780040721.01.T01:CDS
GAAGAGAAAGAGAGAATCTA+GGG 0.478477 7:-81613571 None:intergenic
GAATCTAGGGTTGAGTGAGT+TGG 0.489777 7:-81613558 None:intergenic
CTCATCTCTCTGACCGGGAA+GGG 0.515867 7:+81613520 None:intergenic
CTCTCTGACCGGGAAGGGAA+GGG 0.523020 7:+81613525 None:intergenic
TCTCTCTGACCGGGAAGGGA+AGG 0.523431 7:+81613524 None:intergenic
TTAATGACTATGGAGTTGAT+GGG 0.525574 7:+81614574 MsG0780040721.01.T01:CDS
TAGGGTTGAGTGAGTTGGTG+AGG 0.530846 7:-81613553 None:intergenic
TCTCATCTCTCTGACCGGGA+AGG 0.570660 7:+81613519 None:intergenic
GTAAGCAGAGAGAATGAAAA+CGG 0.579263 7:-81613635 None:intergenic
TAATGACTATGGAGTTGATG+GGG 0.592110 7:+81614575 MsG0780040721.01.T01:CDS
TCTATCTCATCTCTCTGACC+GGG 0.610219 7:+81613515 None:intergenic
AATGACTATGGAGTTGATGG+GGG 0.635035 7:+81614576 MsG0780040721.01.T01:CDS
AGCAGAGAGAATGAAAACGG+AGG 0.744123 7:-81613632 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATATAAATACAAATGT+TGG - Chr7:81615082-81615101 None:intergenic 10.0%
!!! TCTAAATTTTAAAAATTTTC+CGG - Chr7:81613928-81613947 None:intergenic 10.0%
!!! TTGTTTATTAATTGTTTTTA+TGG + Chr7:81614519-81614538 MsG0780040721.01.T01:intron 10.0%
!! TAGATAACTAAAGATATTAA+TGG - Chr7:81614989-81615008 None:intergenic 15.0%
!! TGTTACAATTGTTTATTAAA+TGG + Chr7:81616098-81616117 MsG0780040721.01.T01:intron 15.0%
!! TGTTTAATTAGTATTATGTT+GGG - Chr7:81615253-81615272 None:intergenic 15.0%
!! TTGTTTAATTAGTATTATGT+TGG - Chr7:81615254-81615273 None:intergenic 15.0%
!!! TGATTTATATTTAAAATGCT+AGG + Chr7:81614737-81614756 MsG0780040721.01.T01:intron 15.0%
!!! TTTTTAATGTATTTTCATGT+TGG + Chr7:81616035-81616054 MsG0780040721.01.T01:intron 15.0%
!! AATAAATGAAATGATAAGGT+GGG + Chr7:81615204-81615223 MsG0780040721.01.T01:intron 20.0%
!! AGCTAATAAATGAAATGATA+AGG + Chr7:81615200-81615219 MsG0780040721.01.T01:intron 20.0%
!! CAATTGTTTATTAAATGGTA+TGG + Chr7:81616103-81616122 MsG0780040721.01.T01:intron 20.0%
!! TAATAAATGAAATGATAAGG+TGG + Chr7:81615203-81615222 MsG0780040721.01.T01:intron 20.0%
!! TCAATTAAGACTATTATGTT+GGG + Chr7:81615144-81615163 MsG0780040721.01.T01:intron 20.0%
!! TCATTAATTGAACTAAACTT+TGG + Chr7:81614053-81614072 MsG0780040721.01.T01:intron 20.0%
!! TTATAGAAATCGTACAATAT+TGG - Chr7:81615940-81615959 None:intergenic 20.0%
!! TTCAATTAAGACTATTATGT+TGG + Chr7:81615143-81615162 MsG0780040721.01.T01:intron 20.0%
!! TTTCTTTATCATCAACTATA+GGG + Chr7:81614841-81614860 MsG0780040721.01.T01:intron 20.0%
!!! AGATTTTATATCTTTCTTTG+AGG + Chr7:81614244-81614263 MsG0780040721.01.T01:intron 20.0%
!!! ATGATAGTCTATTTTTCAAA+TGG - Chr7:81615284-81615303 None:intergenic 20.0%
!!! ATGCTTGTCATTAATTATTT+TGG + Chr7:81615356-81615375 MsG0780040721.01.T01:intron 20.0%
!!! GAACAAGTTAATACTTTTTT+AGG - Chr7:81615336-81615355 None:intergenic 20.0%
!!! GATTTTATATCTTTCTTTGA+GGG + Chr7:81614245-81614264 MsG0780040721.01.T01:intron 20.0%
!!! GTTTAAAATCTTATTTAAGC+TGG + Chr7:81614199-81614218 MsG0780040721.01.T01:intron 20.0%
!!! TGTTTAATTTTTAGCTAAGT+TGG + Chr7:81614343-81614362 MsG0780040721.01.T01:intron 20.0%
!!! TTTTCTTTATCATCAACTAT+AGG + Chr7:81614840-81614859 MsG0780040721.01.T01:intron 20.0%
! AAAAAGAAAGAACAAACTCT+TGG - Chr7:81613660-81613679 None:intergenic 25.0%
! AAAGTAATATGCATGTGAAA+AGG - Chr7:81615657-81615676 None:intergenic 25.0%
! ACTATTATGTTGGGTATATA+AGG + Chr7:81615153-81615172 MsG0780040721.01.T01:intron 25.0%
! AGAAAAGAACCATATTAAAC+AGG - Chr7:81615885-81615904 None:intergenic 25.0%
! GAAAAGAACCATATTAAACA+GGG - Chr7:81615884-81615903 None:intergenic 25.0%
! GAATTTATGAAACATCACAA+TGG + Chr7:81615546-81615565 MsG0780040721.01.T01:intron 25.0%
! TATACATTAATACTTTGTCC+AGG - Chr7:81615311-81615330 None:intergenic 25.0%
! TGAAAATAAACTCAATTGCA+AGG - Chr7:81615852-81615871 None:intergenic 25.0%
! TGAGCTTATGAATAAAACTA+AGG - Chr7:81614081-81614100 None:intergenic 25.0%
! TTATGAGTGTTCTAACTAAT+AGG + Chr7:81614019-81614038 MsG0780040721.01.T01:intron 25.0%
! TTCATTTGACATGTGAATTA+TGG + Chr7:81614491-81614510 MsG0780040721.01.T01:intron 25.0%
!! ATAAAATCTAAAGTCCAGTT+TGG - Chr7:81614233-81614252 None:intergenic 25.0%
!! GTTTTTGTCTACAATTAATC+AGG - Chr7:81614884-81614903 None:intergenic 25.0%
!! TAAATTCTTGTTGTATCGTT+TGG + Chr7:81613758-81613777 MsG0780040721.01.T01:intron 25.0%
!! TTATGTGTTATTGTTAAGCT+GGG + Chr7:81613895-81613914 MsG0780040721.01.T01:intron 25.0%
!!! AACTTTTTCATTTGAATGAG+TGG - Chr7:81613978-81613997 None:intergenic 25.0%
!!! AGATAAAGTTTTTAGTTGCT+GGG + Chr7:81615737-81615756 MsG0780040721.01.T01:intron 25.0%
!!! ATTTTGATTTCTGATTGATG+TGG + Chr7:81614298-81614317 MsG0780040721.01.T01:intron 25.0%
AACACACAGATGTAGATAAA+AGG - Chr7:81615622-81615641 None:intergenic 30.0%
AACATGTAATTAGGAATGGA+GGG - Chr7:81614927-81614946 None:intergenic 30.0%
AATTAGTATTATGTTGGGAG+TGG - Chr7:81615248-81615267 None:intergenic 30.0%
ACAATTGTAACAATACACGA+AGG - Chr7:81616090-81616109 None:intergenic 30.0%
ATAGTCATTAAATCTGTGAG+AGG - Chr7:81614565-81614584 None:intergenic 30.0%
ATCGCATTTGATCAGAAATT+TGG + Chr7:81614454-81614473 MsG0780040721.01.T01:intron 30.0%
GCATTCAATATGTAACTGAA+GGG + Chr7:81613828-81613847 MsG0780040721.01.T01:intron 30.0%
TAGTCATTAAATCTGTGAGA+GGG - Chr7:81614564-81614583 None:intergenic 30.0%
TCTCACAGATTTAATGACTA+TGG + Chr7:81614564-81614583 MsG0780040721.01.T01:intron 30.0%
TGAATCTACTTTGTGTAAGA+AGG - Chr7:81614637-81614656 None:intergenic 30.0%
TGCATTCAATATGTAACTGA+AGG + Chr7:81613827-81613846 MsG0780040721.01.T01:intron 30.0%
TTATGTTGGGTATATAAGGT+TGG + Chr7:81615157-81615176 MsG0780040721.01.T01:intron 30.0%
TTTAATGACTATGGAGTTGA+TGG + Chr7:81614573-81614592 MsG0780040721.01.T01:CDS 30.0%
TTTATCATCAACTATAGGGA+TGG + Chr7:81614845-81614864 MsG0780040721.01.T01:intron 30.0%
TTTCTATAACTACGACAATG+AGG + Chr7:81615951-81615970 MsG0780040721.01.T01:CDS 30.0%
! ACTTTTCATCAAATTCACAC+AGG + Chr7:81615990-81616009 MsG0780040721.01.T01:CDS 30.0%
! AGTTGCTGAGAACATTTTTA+CGG - Chr7:81615465-81615484 None:intergenic 30.0%
! GTTATGTGTTATTGTTAAGC+TGG + Chr7:81613894-81613913 MsG0780040721.01.T01:intron 30.0%
! TTAATGACTATGGAGTTGAT+GGG + Chr7:81614574-81614593 MsG0780040721.01.T01:CDS 30.0%
!!! CAGATAAAGTTTTTAGTTGC+TGG + Chr7:81615736-81615755 MsG0780040721.01.T01:intron 30.0%
!!! CATTAATTATTTTGGCCATG+AGG + Chr7:81615364-81615383 MsG0780040721.01.T01:intron 30.0%
!!! GATAAAGTTTTTAGTTGCTG+GGG + Chr7:81615738-81615757 MsG0780040721.01.T01:intron 30.0%
!!! GGGCTTTGTTGTTTTTTATT+GGG + Chr7:81616157-81616176 MsG0780040721.01.T01:CDS 30.0%
AAATAGACTATCATGTAGCC+TGG + Chr7:81615290-81615309 MsG0780040721.01.T01:intron 35.0%
AAATCAAAATCCACGAGCAA+TGG - Chr7:81614288-81614307 None:intergenic 35.0%
CAACATGTAATTAGGAATGG+AGG - Chr7:81614928-81614947 None:intergenic 35.0%
CACAAAGTAGATTCACAAGT+TGG + Chr7:81614642-81614661 MsG0780040721.01.T01:CDS 35.0%
CTGCAACATGTAATTAGGAA+TGG - Chr7:81614931-81614950 None:intergenic 35.0%
GAAATCGTACAATATTGGAG+TGG - Chr7:81615935-81615954 None:intergenic 35.0%
GAAGAGAAAGAGAGAATCTA+GGG - Chr7:81613574-81613593 None:intergenic 35.0%
GAGAGACTAACATCAATTTC+TGG - Chr7:81614678-81614697 None:intergenic 35.0%
GATTCTCTCTTTCTCTTCAA+TGG + Chr7:81613576-81613595 MsG0780040721.01.T01:exon 35.0%
GTAAGCAGAGAGAATGAAAA+CGG - Chr7:81613638-81613657 None:intergenic 35.0%
GTATTACTCCTTGCAGAATA+TGG + Chr7:81616125-81616144 MsG0780040721.01.T01:intron 35.0%
GTTGACTGCAACATGTAATT+AGG - Chr7:81614936-81614955 None:intergenic 35.0%
TCGTTCATTCAGTAGATCTA+TGG + Chr7:81613788-81613807 MsG0780040721.01.T01:intron 35.0%
TGAAAAACTCCATTCCTAGA+AGG + Chr7:81616181-81616200 MsG0780040721.01.T01:CDS 35.0%
TGAAGAGAAAGAGAGAATCT+AGG - Chr7:81613575-81613594 None:intergenic 35.0%
TTAAAAAGATAGTGAGCCCA+TGG - Chr7:81616022-81616041 None:intergenic 35.0%
TTCTCAGTATCACTAATGTC+AGG + Chr7:81614707-81614726 MsG0780040721.01.T01:intron 35.0%
! ACAGCTTCTGAAAACTGAAA+TGG + Chr7:81615498-81615517 MsG0780040721.01.T01:intron 35.0%
! CAGCTTCTGAAAACTGAAAT+GGG + Chr7:81615499-81615518 MsG0780040721.01.T01:intron 35.0%
! GCAGTATGATATGATAGTGT+TGG + Chr7:81615432-81615451 MsG0780040721.01.T01:intron 35.0%
! GGAGTATTAAGTACTCTTGT+AGG - Chr7:81614906-81614925 None:intergenic 35.0%
! TTGGGTATATAAGGTTGGTT+TGG + Chr7:81615162-81615181 MsG0780040721.01.T01:intron 35.0%
! TTGTATTGACATGTGTGAAG+TGG - Chr7:81614958-81614977 None:intergenic 35.0%
! TTTGATCAGAAATTTGGAGC+TGG + Chr7:81614460-81614479 MsG0780040721.01.T01:intron 35.0%
!! TAATGACTATGGAGTTGATG+GGG + Chr7:81614575-81614594 MsG0780040721.01.T01:CDS 35.0%
!! TGTAAGAAGGCATCAAACTT+TGG - Chr7:81614624-81614643 None:intergenic 35.0%
!!! GGGGCTTTGTTGTTTTTTAT+TGG + Chr7:81616156-81616175 MsG0780040721.01.T01:CDS 35.0%
!!! GTTTTGGAAACCTTCTTCTT+GGG - Chr7:81616210-81616229 None:intergenic 35.0%
!!! TGTTTTGGAAACCTTCTTCT+TGG - Chr7:81616211-81616230 None:intergenic 35.0%
AAAGAGAGCCATATTCTGCA+AGG - Chr7:81616136-81616155 None:intergenic 40.0%
AGTATTATGTTGGGAGTGGA+AGG - Chr7:81615244-81615263 None:intergenic 40.0%
ATATTGGAGTGGTGATCAAC+TGG - Chr7:81615924-81615943 None:intergenic 40.0%
CAGTGAAGTGAAGTCTTACA+TGG + Chr7:81614778-81614797 MsG0780040721.01.T01:intron 40.0%
CTCTAGTGCCCTGTTTAATA+TGG + Chr7:81615873-81615892 MsG0780040721.01.T01:intron 40.0%
GAGGTTGGATAAAGATGTTG+GGG + Chr7:81615524-81615543 MsG0780040721.01.T01:intron 40.0%
GGAGGTTGGATAAAGATGTT+GGG + Chr7:81615523-81615542 MsG0780040721.01.T01:intron 40.0%
GTTATGCCTTCGTAAATGCA+CGG + Chr7:81615119-81615138 MsG0780040721.01.T01:intron 40.0%
TCATTAAATCTGTGAGAGGG+AGG - Chr7:81614561-81614580 None:intergenic 40.0%
TGAAATGATAAGGTGGGAGA+AGG + Chr7:81615210-81615229 MsG0780040721.01.T01:intron 40.0%
TGACTGCTTGCTCATCATAA+GGG + Chr7:81615399-81615418 MsG0780040721.01.T01:intron 40.0%
TGCAGAATATGGCTCTCTTT+GGG + Chr7:81616136-81616155 MsG0780040721.01.T01:intron 40.0%
TGGAGGTTGGATAAAGATGT+TGG + Chr7:81615522-81615541 MsG0780040721.01.T01:intron 40.0%
TGTTAAGCTGGGAAATTAGC+CGG + Chr7:81613906-81613925 MsG0780040721.01.T01:intron 40.0%
TTATGCCTTCGTAAATGCAC+GGG + Chr7:81615120-81615139 MsG0780040721.01.T01:intron 40.0%
TTCATACTTGGCAGTTCGTT+CGG + Chr7:81615793-81615812 MsG0780040721.01.T01:CDS 40.0%
TTGCAGAATATGGCTCTCTT+TGG + Chr7:81616135-81616154 MsG0780040721.01.T01:intron 40.0%
! ATGGCTTTCGCTTCTTTTCT+CGG + Chr7:81613595-81613614 MsG0780040721.01.T01:CDS 40.0%
! CTTCTGAAAACTGAAATGGG+TGG + Chr7:81615502-81615521 MsG0780040721.01.T01:intron 40.0%
! GGAGGGATTCTTTTCATACT+TGG + Chr7:81615781-81615800 MsG0780040721.01.T01:CDS 40.0%
! GTACTTGTTGAGAAAGTTGC+CGG + Chr7:81614408-81614427 MsG0780040721.01.T01:intron 40.0%
!! AATGACTATGGAGTTGATGG+GGG + Chr7:81614576-81614595 MsG0780040721.01.T01:CDS 40.0%
!! CATGGACTTTGAGACTACTT+AGG + Chr7:81614796-81614815 MsG0780040721.01.T01:intron 40.0%
!! GGTATATAAGGTTGGTTTGG+TGG + Chr7:81615165-81615184 MsG0780040721.01.T01:intron 40.0%
!! TATAAGGTTGGTTTGGTGGT+TGG + Chr7:81615169-81615188 MsG0780040721.01.T01:intron 40.0%
AAACTGAAATGGGTGGAGGT+TGG + Chr7:81615509-81615528 MsG0780040721.01.T01:intron 45.0%
AGCAGAGAGAATGAAAACGG+AGG - Chr7:81613635-81613654 None:intergenic 45.0%
AGCTGGAAGCTAATCCAAAC+TGG + Chr7:81614216-81614235 MsG0780040721.01.T01:intron 45.0%
ATGTTGGGAGTGGAAGGATA+TGG - Chr7:81615238-81615257 None:intergenic 45.0%
CAACTGGTGCAAAAGCTACA+AGG - Chr7:81615908-81615927 None:intergenic 45.0%
CACTGTGACAGCTTGAAATC+AGG - Chr7:81616065-81616084 None:intergenic 45.0%
CAGCAAGCACTAGCAATAAC+CGG - Chr7:81614430-81614449 None:intergenic 45.0%
CTGAAAACTGAAATGGGTGG+AGG + Chr7:81615505-81615524 MsG0780040721.01.T01:intron 45.0%
CTGACTGCTTGCTCATCATA+AGG + Chr7:81615398-81615417 MsG0780040721.01.T01:intron 45.0%
CTTATGATGAGCAAGCAGTC+AGG - Chr7:81615400-81615419 None:intergenic 45.0%
GCAGAATATGGCTCTCTTTG+GGG + Chr7:81616137-81616156 MsG0780040721.01.T01:intron 45.0%
TAGAAGGCAACCCAAGAAGA+AGG + Chr7:81616197-81616216 MsG0780040721.01.T01:CDS 45.0%
TCAGGCAAACATAAGCCTCA+TGG - Chr7:81615382-81615401 None:intergenic 45.0%
TCATCATAAGGGATCTCAGC+AGG + Chr7:81615410-81615429 MsG0780040721.01.T01:intron 45.0%
TTGAACCCGTGCATTTACGA+AGG - Chr7:81615128-81615147 None:intergenic 45.0%
! GAATCTAGGGTTGAGTGAGT+TGG - Chr7:81613561-81613580 None:intergenic 45.0%
! TTCGTTCGGAGCTGTACTTT+TGG + Chr7:81615807-81615826 MsG0780040721.01.T01:CDS 45.0%
! TTCTTCTTGGGTTGCCTTCT+AGG - Chr7:81616198-81616217 None:intergenic 45.0%
ATTCACACAGGTCAGAGCCA+TGG + Chr7:81616002-81616021 MsG0780040721.01.T01:intron 50.0%
TTCACACAGGTCAGAGCCAT+GGG + Chr7:81616003-81616022 MsG0780040721.01.T01:intron 50.0%
TTTCTGATCGCCATTGCTCG+TGG + Chr7:81614275-81614294 MsG0780040721.01.T01:intron 50.0%
! AGGTTTTTCCCTTCCCTTCC+CGG - Chr7:81613536-81613555 None:intergenic 50.0%
! CTTGGGTTGCCTTCTAGGAA+TGG - Chr7:81616193-81616212 None:intergenic 50.0%
! GCTATTGCTCTCAAGGGCAT+TGG + Chr7:81615760-81615779 MsG0780040721.01.T01:CDS 50.0%
!! ATTGCTCTCAAGGGCATTGG+AGG + Chr7:81615763-81615782 MsG0780040721.01.T01:CDS 50.0%
!! TAGGGTTGAGTGAGTTGGTG+AGG - Chr7:81613556-81613575 None:intergenic 50.0%
!! TTGCTCTCAAGGGCATTGGA+GGG + Chr7:81615764-81615783 MsG0780040721.01.T01:CDS 50.0%
GCTGGGGCTATTGCTCTCAA+GGG + Chr7:81615754-81615773 MsG0780040721.01.T01:CDS 55.0%
TGCTGGGGCTATTGCTCTCA+AGG + Chr7:81615753-81615772 MsG0780040721.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 81613526 81616242 81613526 ID=MsG0780040721.01;Name=MsG0780040721.01
Chr7 mRNA 81613526 81616242 81613526 ID=MsG0780040721.01.T01;Parent=MsG0780040721.01;Name=MsG0780040721.01.T01;_AED=0.46;_eAED=0.46;_QI=69|1|1|1|0.5|0.6|5|0|157
Chr7 exon 81613526 81613662 81613526 ID=MsG0780040721.01.T01:exon:38114;Parent=MsG0780040721.01.T01
Chr7 exon 81614572 81614686 81614572 ID=MsG0780040721.01.T01:exon:38115;Parent=MsG0780040721.01.T01
Chr7 five_prime_UTR 81613526 81613594 81613526 ID=MsG0780040721.01.T01:five_prime_utr;Parent=MsG0780040721.01.T01
Chr7 CDS 81613595 81613662 81613595 ID=MsG0780040721.01.T01:cds;Parent=MsG0780040721.01.T01
Chr7 CDS 81614572 81614686 81614572 ID=MsG0780040721.01.T01:cds;Parent=MsG0780040721.01.T01
Chr7 CDS 81615739 81615828 81615739 ID=MsG0780040721.01.T01:cds;Parent=MsG0780040721.01.T01
Chr7 CDS 81615913 81616011 81615913 ID=MsG0780040721.01.T01:cds;Parent=MsG0780040721.01.T01
Chr7 CDS 81616141 81616242 81616141 ID=MsG0780040721.01.T01:cds;Parent=MsG0780040721.01.T01
Chr7 mRNA 81613528 81616242 81613528 ID=MsG0780040721.01.T02;Parent=MsG0780040721.01;Name=MsG0780040721.01.T02;_AED=0.47;_eAED=0.47;_QI=0|0.66|0.75|1|0.33|0.5|4|0|141
Chr7 exon 81613528 81613662 81613528 ID=MsG0780040721.01.T02:exon:38119;Parent=MsG0780040721.01.T02
Chr7 CDS 81613528 81613662 81613528 ID=MsG0780040721.01.T02:cds;Parent=MsG0780040721.01.T02
Chr7 CDS 81615739 81615828 81615739 ID=MsG0780040721.01.T02:cds;Parent=MsG0780040721.01.T02
Chr7 CDS 81615913 81616011 81615913 ID=MsG0780040721.01.T02:cds;Parent=MsG0780040721.01.T02
Chr7 CDS 81616141 81616242 81616141 ID=MsG0780040721.01.T02:cds;Parent=MsG0780040721.01.T02
Gene Sequence

>MsG0780040721.01.T02

TCTGACCGGGAAGGGAAGGGAAAAACCTCACCAACTCACTCAACCCTAGATTCTCTCTTTCTCTTCAATGGCTTTCGCTTCTTTTCTCGGAAGAGTTCTCTTCGCCTCCGTTTTCATTCTCTCTGCTTACCAAGAATAAAGTTTTTAGTTGCTGGGGCTATTGCTCTCAAGGGCATTGGAGGGATTCTTTTCATACTTGGCAGTTCGTTCGGAGCTGTACTTTTGCTTTTGCACCAGTTGATCACCACTCCAATATTGTACGATTTCTATAACTACGACAATGAGGACAAAGAATATATTCAACTTTTCATCAAATTCACACAGAATATGGCTCTCTTTGGGGCTTTGTTGTTTTTTATTGGGATGAAAAACTCCATTCCTAGAAGGCAACCCAAGAAGAAGGTTTCCAAAACAAAAACCTACTAG

>MsG0780040721.01.T01

ATGGCTTTCGCTTCTTTTCTCGGAAGAGTTCTCTTCGCCTCCGTTTTCATTCTCTCTGCTTACCAAGAATTTAATGACTATGGAGTTGATGGGGGACTTGCAGCAAAAGCAATCAGACCAAAGTTTGATGCCTTCTTACACAAAGTAGATTCACAAGTTGGCTTCAATCTTCCAGAAATTGATATAAAGTTTTTAGTTGCTGGGGCTATTGCTCTCAAGGGCATTGGAGGGATTCTTTTCATACTTGGCAGTTCGTTCGGAGCTGTACTTTTGCTTTTGCACCAGTTGATCACCACTCCAATATTGTACGATTTCTATAACTACGACAATGAGGACAAAGAATATATTCAACTTTTCATCAAATTCACACAGAATATGGCTCTCTTTGGGGCTTTGTTGTTTTTTATTGGGATGAAAAACTCCATTCCTAGAAGGCAACCCAAGAAGAAGGTTTCCAAAACAAAAACCTACTAG
Protein sequence

>MsG0780040721.01.T02

SDREGKGKTSPTHSTLDSLFLFNGFRFFSRKSSLRLRFHSLCLPRIKFLVAGAIALKGIGGILFILGSSFGAVLLLLHQLITTPILYDFYNYDNEDKEYIQLFIKFTQNMALFGALLFFIGMKNSIPRRQPKKKVSKTKTY*

>MsG0780040721.01.T01

MAFASFLGRVLFASVFILSAYQEFNDYGVDGGLAAKAIRPKFDAFLHKVDSQVGFNLPEIDIKFLVAGAIALKGIGGILFILGSSFGAVLLLLHQLITTPILYDFYNYDNEDKEYIQLFIKFTQNMALFGALLFFIGMKNSIPRRQPKKKVSKTKTY*