AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040736.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040736.01.T01 MTR_7g096870 97.575 536 13 0 1 536 1 536 0.0 1084
MsG0780040736.01.T01 MTR_7g096880 90.637 534 48 1 1 534 1 532 0.0 962
MsG0780040736.01.T01 MTR_1g069935 85.356 519 76 0 1 519 1 519 0.0 941
MsG0780040736.01.T01 MTR_3g082700 75.741 540 128 1 1 537 1 540 0.0 837
MsG0780040736.01.T01 MTR_1g069930 75.340 515 126 1 1 514 1 515 0.0 835
MsG0780040736.01.T01 MTR_1g074930 76.834 518 116 2 5 518 4 521 0.0 833
MsG0780040736.01.T01 MTR_1g043220 75.376 532 127 2 5 532 4 535 0.0 822
MsG0780040736.01.T01 MTR_1g043200 76.281 527 119 3 5 527 4 528 0.0 817
MsG0780040736.01.T01 MTR_1g074940 76.654 514 100 4 1 508 1 500 0.0 813
MsG0780040736.01.T01 MTR_1g043290 75.475 526 125 2 5 526 4 529 0.0 812
MsG0780040736.01.T01 MTR_1g028600 61.089 514 188 3 6 518 3 505 0.0 634
MsG0780040736.01.T01 MTR_5g068140 57.537 544 203 4 8 532 7 541 0.0 619
MsG0780040736.01.T01 MTR_4g083960 51.866 536 227 12 6 534 5 516 1.03e-180 518
MsG0780040736.01.T01 MTR_3g084110 21.875 448 288 15 76 512 76 472 1.81e-13 73.2
MsG0780040736.01.T01 MTR_7g446340 23.340 467 293 17 76 527 104 520 3.34e-12 69.3
MsG0780040736.01.T01 MTR_6g007340 23.340 467 293 17 76 527 104 520 3.34e-12 69.3
MsG0780040736.01.T01 MTR_6g088450 25.564 399 245 12 81 463 108 470 4.95e-12 68.6
MsG0780040736.01.T01 MTR_1g116660 21.429 434 277 14 90 511 97 478 5.09e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040736.01.T01 AT2G38940 85.078 516 74 1 1 513 1 516 0.0 928
MsG0780040736.01.T01 AT3G54700 84.556 518 79 1 1 518 1 517 0.0 926
MsG0780040736.01.T01 AT3G54700 84.556 518 79 1 1 518 1 517 0.0 926
MsG0780040736.01.T01 AT2G32830 74.122 541 136 1 1 537 1 541 0.0 853
MsG0780040736.01.T01 AT5G43360 78.077 520 112 1 1 518 1 520 0.0 839
MsG0780040736.01.T01 AT5G43350 77.992 518 112 1 1 516 1 518 0.0 837
MsG0780040736.01.T01 AT5G43370 77.799 518 113 1 1 516 1 518 0.0 808
MsG0780040736.01.T01 AT5G43370 77.799 518 113 1 1 516 1 518 0.0 808
MsG0780040736.01.T01 AT5G43340 67.181 518 155 2 3 518 4 508 0.0 737
MsG0780040736.01.T01 AT1G20860 48.972 535 255 9 6 533 3 526 8.00e-174 501
MsG0780040736.01.T01 AT1G76430 47.858 537 251 11 5 528 3 523 1.73e-173 501
MsG0780040736.01.T01 AT1G20860 48.972 535 255 9 6 533 55 578 4.86e-173 501
MsG0780040736.01.T01 AT4G08878 68.487 238 75 0 31 268 13 250 3.61e-115 342
MsG0780040736.01.T01 AT4G08895 55.944 143 31 1 318 460 23 133 6.06e-47 161
MsG0780040736.01.T01 AT2G43330 22.748 444 260 17 90 511 93 475 2.03e-11 67.0

Find 140 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTCTTCTTTGCAAATTT+TGG -0.031518 7:+81795909 MsG0780040736.01.T01:CDS
GCTTTCTGTGGAACACTTTC+AGG 0.108694 7:+81794910 MsG0780040736.01.T01:CDS
CCCTTTGCTTCTTCCGGTTT+TGG 0.142326 7:+81795067 MsG0780040736.01.T01:CDS
TATCCTTCTGGAAGAGATTT+TGG 0.150755 7:-81795614 None:intergenic
CATGCAGGGTTTCGGAATTT+TGG 0.151969 7:+81795191 MsG0780040736.01.T01:CDS
GTTGGGATGTTGTAACATTT+TGG 0.179506 7:+81796136 MsG0780040736.01.T01:CDS
TGCATTCGGGTTCTTGTATT+TGG 0.192044 7:+81796040 MsG0780040736.01.T01:CDS
GCGGTATAACGAGCAGTTTC+TGG 0.246126 7:-81795390 None:intergenic
GTTATCTGTTCAATTGGTTC+TGG 0.268162 7:+81795006 MsG0780040736.01.T01:CDS
AGGGTTGTCATGACAGATTT+TGG 0.291172 7:-81795048 None:intergenic
GGGGCTATAGTTGGTGCATT+CGG 0.293505 7:+81796026 MsG0780040736.01.T01:CDS
ATTGGTTCTGGTCTTTCTTT+CGG 0.310334 7:+81795018 MsG0780040736.01.T01:CDS
AACCTCCTCAAGTGCATTCA+TGG 0.318200 7:-81795673 None:intergenic
TGACAACCCTTTGCTTCTTC+CGG 0.331448 7:+81795061 MsG0780040736.01.T01:CDS
ATTAGAATACTCCGACATTA+TGG 0.331666 7:-81795130 None:intergenic
CTTCTCCTCTTTCTGTGGTT+CGG 0.335668 7:-81795481 None:intergenic
CATAATTTCATCTGCATTCA+AGG 0.338184 7:+81795233 MsG0780040736.01.T01:CDS
GTCTTTGCCATGCAGGGTTT+CGG 0.339550 7:+81795183 MsG0780040736.01.T01:CDS
GGGCTATAGTTGGTGCATTC+GGG 0.341772 7:+81796027 MsG0780040736.01.T01:CDS
TTGCGCTGAAAATATCCTTC+TGG 0.369813 7:-81795626 None:intergenic
TTCCCCAAGCAGACTACATT+TGG 0.372520 7:+81795304 MsG0780040736.01.T01:CDS
CCTCCAAATGTAGTCTGCTT+GGG 0.372673 7:-81795307 None:intergenic
GCAGTACAGTACCAGGCTAT+TGG 0.376413 7:+81795733 MsG0780040736.01.T01:CDS
AAGATTTACCATCCAATTGA+TGG 0.386978 7:+81795785 MsG0780040736.01.T01:CDS
TGGTGGTGACTACCCTCTTT+CGG 0.394304 7:+81795104 MsG0780040736.01.T01:CDS
TGCAGCAGTCTTTGCCATGC+AGG 0.397867 7:+81795176 MsG0780040736.01.T01:CDS
ACAACAAATGTTGTAGCATT+AGG 0.400761 7:-81795933 None:intergenic
CGTCATGGACTACATTTACT+TGG 0.401161 7:+81795549 MsG0780040736.01.T01:CDS
TAAAGAAGAATCCCATCAAT+TGG 0.402453 7:-81795797 None:intergenic
CATCCGCATCGGGAAAGCTT+GGG 0.403184 7:+81796006 MsG0780040736.01.T01:CDS
TAGCACCTCAATTTGATCCT+TGG 0.413690 7:-81794686 None:intergenic
TCCTCCAAATGTAGTCTGCT+TGG 0.420387 7:-81795308 None:intergenic
GGCAAATGGAAAATCTTTAG+AGG 0.421280 7:+81796187 MsG0780040736.01.T01:CDS
CGCATATACTACCACGTTGA+TGG 0.426932 7:+81794832 MsG0780040736.01.T01:CDS
TACCGAACCCAAGCCAAAAC+CGG 0.427494 7:-81795080 None:intergenic
TGGCTGGCTTGGTGATAAGA+TGG 0.431799 7:+81794945 MsG0780040736.01.T01:CDS
GGTGAGAATGATGAGGAAGT+TGG 0.432793 7:+81796218 MsG0780040736.01.T01:CDS
GCAGGGTACCCTGCAGGTAT+TGG 0.442599 7:+81796092 MsG0780040736.01.T01:CDS
ATGATGGTTATCTGTTCAAT+TGG 0.447387 7:+81795000 MsG0780040736.01.T01:CDS
GGCAAAGACTGCTGCAATGA+AGG 0.448745 7:-81795169 None:intergenic
TGCAATCATCATAGCTGGTA+TGG 0.448896 7:+81794750 MsG0780040736.01.T01:CDS
AGCTGCAGCAGATATGTCTA+AGG 0.462417 7:+81795437 MsG0780040736.01.T01:CDS
TTATGAGTCCAGTGTTCATA+AGG 0.464297 7:-81795849 None:intergenic
GGCTGGCTTGGTGATAAGAT+GGG 0.464364 7:+81794946 MsG0780040736.01.T01:CDS
TCATCCGCATCGGGAAAGCT+TGG 0.465982 7:+81796005 MsG0780040736.01.T01:CDS
GACAAGAGTAAAGCAGATGC+AGG 0.466575 7:+81796074 MsG0780040736.01.T01:CDS
AAGGAAAAGGCTAAATCATA+TGG 0.468204 7:+81795501 MsG0780040736.01.T01:CDS
TGGGGAACAGTTGAACCAAC+TGG 0.470918 7:-81795288 None:intergenic
ACATCACCACAAATCCTATT+CGG 0.472436 7:-81795878 None:intergenic
ATTCACAGCAGCTGATACAT+TGG 0.472564 7:-81794881 None:intergenic
ACTCATAAGGATAACCGAAT+AGG 0.475963 7:+81795864 MsG0780040736.01.T01:CDS
CTTTCTGTGGAACACTTTCA+GGG 0.477760 7:+81794911 MsG0780040736.01.T01:CDS
CAAGTTGATCGGAATCTAGC+TGG 0.478361 7:-81795972 None:intergenic
GAATAGTAAGTCATTGCAGC+TGG 0.478984 7:-81795354 None:intergenic
TGAAGCCGAACCACAGAAAG+AGG 0.480495 7:+81795476 MsG0780040736.01.T01:CDS
GACATTATGGTAGCCGAAAG+AGG 0.481182 7:-81795117 None:intergenic
TTTCATCTGCATTCAAGGCC+AGG 0.481632 7:+81795238 MsG0780040736.01.T01:CDS
TTCTTAGTACCTGAGGCAAA+TGG 0.483740 7:+81796173 MsG0780040736.01.T01:CDS
TGGCTTGGGTTCGGTATTGG+TGG 0.492801 7:+81795087 MsG0780040736.01.T01:CDS
TCCCTTGTTACCAAGTTGCT+CGG 0.496149 7:+81794808 MsG0780040736.01.T01:CDS
CTTGTATTTGGCACAAAACA+AGG 0.497426 7:+81796052 MsG0780040736.01.T01:CDS
TTATGAACACTGGACTCATA+AGG 0.499390 7:+81795851 MsG0780040736.01.T01:CDS
CCCAAAATTTGCAAAGAAGA+AGG 0.507277 7:-81795910 None:intergenic
TACATTGGGAGGCAATGTAC+CGG 0.509415 7:-81794866 None:intergenic
GTTGATGGTGCAGCGAAGCC+CGG 0.509611 7:+81794847 MsG0780040736.01.T01:CDS
CCCAAGCAGACTACATTTGG+AGG 0.513096 7:+81795307 MsG0780040736.01.T01:CDS
GGAAAGCTTGGGGCTATAGT+TGG 0.514607 7:+81796017 MsG0780040736.01.T01:CDS
GCAGCAGTCTTTGCCATGCA+GGG 0.514618 7:+81795177 MsG0780040736.01.T01:CDS
AGATTTACCATCCAATTGAT+GGG 0.514693 7:+81795786 MsG0780040736.01.T01:CDS
TTCACTGCAATCATCATAGC+TGG 0.515551 7:+81794745 MsG0780040736.01.T01:CDS
ACAGAAAGAGGAGAAGGAAA+AGG 0.518948 7:+81795488 MsG0780040736.01.T01:CDS
GGATAACCGAATAGGATTTG+TGG 0.523531 7:+81795872 MsG0780040736.01.T01:CDS
CATGGAATATCATCCGCATC+GGG 0.524513 7:+81795996 MsG0780040736.01.T01:CDS
GGCTTGGTGATAAGATGGGC+AGG 0.528400 7:+81794950 MsG0780040736.01.T01:CDS
GCCAAAACCGGAAGAAGCAA+AGG 0.528845 7:-81795068 None:intergenic
CTATGATGATTGCAGTGAAA+TGG 0.528943 7:-81794741 None:intergenic
TTCTTCATACCAATACCTGC+AGG 0.529263 7:-81796101 None:intergenic
CGAACCACAGAAAGAGGAGA+AGG 0.530308 7:+81795482 MsG0780040736.01.T01:CDS
TTCACAGCAGCTGATACATT+GGG 0.530334 7:-81794880 None:intergenic
GTGGCTTTCATAGACAGAAT+AGG 0.532759 7:+81795762 MsG0780040736.01.T01:CDS
CTGCAATGACTTACTATTCG+CGG 0.533664 7:+81795358 MsG0780040736.01.T01:CDS
AGTGCATTCATGGTTTGTGC+AGG 0.539877 7:-81795663 None:intergenic
AATGTATCAGCTGCTGTGAA+TGG 0.543645 7:+81794883 MsG0780040736.01.T01:CDS
GCAGATGCAGGGTACCCTGC+AGG 0.546146 7:+81796086 MsG0780040736.01.T01:CDS
GGCTTGAACAGTCATGGCCA+AGG 0.546875 7:+81794669 None:intergenic
GCATTCATGGTTTGTGCAGG+TGG 0.550880 7:-81795660 None:intergenic
GTGAATGGTGTAGCTTTCTG+TGG 0.554704 7:+81794898 MsG0780040736.01.T01:CDS
ATATTCCATGGCAAGTTGAT+CGG 0.556932 7:-81795983 None:intergenic
AAATCTTTAGAGGAAATGTC+AGG 0.557207 7:+81796197 MsG0780040736.01.T01:CDS
TTGCCATTCCTTATGAACAC+TGG 0.558026 7:+81795841 MsG0780040736.01.T01:CDS
TACTTGGTACAACAAGCACT+TGG 0.559616 7:+81795565 MsG0780040736.01.T01:CDS
CCATGGAATATCATCCGCAT+CGG 0.559707 7:+81795995 MsG0780040736.01.T01:CDS
TCTTACGAGGTTGATCCAGT+TGG 0.560435 7:+81795273 MsG0780040736.01.T01:CDS
TGGAGGATAATTGTGATGGT+AGG 0.563401 7:+81795324 MsG0780040736.01.T01:CDS
AGTCCAGTGTTCATAAGGAA+TGG 0.563480 7:-81795844 None:intergenic
GACCGAGCAACTTGGTAACA+AGG 0.566465 7:-81794810 None:intergenic
GCAATCATCATAGCTGGTAT+GGG 0.570874 7:+81794751 MsG0780040736.01.T01:CDS
AGATTCCGATCAACTTGCCA+TGG 0.572833 7:+81795978 MsG0780040736.01.T01:CDS
GAAGAATCCCATCAATTGGA+TGG 0.573451 7:-81795793 None:intergenic
ACATTGGGAGGCAATGTACC+GGG 0.578245 7:-81794865 None:intergenic
GTGCACTTTCTTAGTACCTG+AGG 0.580813 7:+81796166 MsG0780040736.01.T01:CDS
TAGCCAAAATCTCTTCCAGA+AGG 0.581352 7:+81795611 MsG0780040736.01.T01:CDS
GCCACGGTAAACCAATAGCC+TGG 0.581737 7:-81795744 None:intergenic
GCTCTATGCAGTACAGTACC+AGG 0.583363 7:+81795726 MsG0780040736.01.T01:CDS
AAAGAGTTCATGAGTCGTCA+TGG 0.583437 7:+81795534 MsG0780040736.01.T01:CDS
TGGTATGACCCTCATGATGA+TGG 0.586953 7:+81794984 MsG0780040736.01.T01:CDS
AACCATGAATGCACTTGAGG+AGG 0.589777 7:+81795671 MsG0780040736.01.T01:CDS
CCGATGCGGATGATATTCCA+TGG 0.591183 7:-81795995 None:intergenic
CCAAAACCGGAAGAAGCAAA+GGG 0.592671 7:-81795067 None:intergenic
CATGGCCAAGGATCAAATTG+AGG 0.593116 7:+81794681 None:intergenic
AGCCCCAAGCTTTCCCGATG+CGG 0.596062 7:-81796009 None:intergenic
CTCCAAATGTAGTCTGCTTG+GGG 0.596396 7:-81795306 None:intergenic
ATCCGCATCGGGAAAGCTTG+GGG 0.597584 7:+81796007 MsG0780040736.01.T01:CDS
AATGTCAGGTGAGAATGATG+AGG 0.605492 7:+81796211 MsG0780040736.01.T01:CDS
CATTTGGAGGATAATTGTGA+TGG 0.611828 7:+81795320 MsG0780040736.01.T01:CDS
GCGTTGTTATTCTGAGCATG+AGG 0.612504 7:-81796263 None:intergenic
GTTTGATTCTCCGTCTTACG+AGG 0.613183 7:+81795260 MsG0780040736.01.T01:CDS
AATAGTAAGTCATTGCAGCT+GGG 0.613221 7:-81795353 None:intergenic
ACTGGATCAACCTCGTAAGA+CGG 0.613448 7:-81795270 None:intergenic
ACAAACCATGAATGCACTTG+AGG 0.613620 7:+81795668 MsG0780040736.01.T01:CDS
AACAGATAACCATCATCATG+AGG 0.618082 7:-81794993 None:intergenic
GTATATGCGACCGAGCAACT+TGG 0.619928 7:-81794818 None:intergenic
ACATTATGGTAGCCGAAAGA+GGG 0.623125 7:-81795116 None:intergenic
ACCAGGCTATTGGTTTACCG+TGG 0.630346 7:+81795743 MsG0780040736.01.T01:CDS
TATTCTGTCTATGAAAGCCA+CGG 0.630634 7:-81795760 None:intergenic
GGTGCTAAATGCGCTTGATG+TGG 0.631666 7:+81794702 MsG0780040736.01.T01:CDS
ATTTGCAAAGAAGAAGGTCA+AGG 0.633508 7:-81795904 None:intergenic
AATGGCAAGAGCAAACATGA+AGG 0.639251 7:-81795826 None:intergenic
CAAAATTCCGAAACCCTGCA+TGG 0.639934 7:-81795190 None:intergenic
ACAGCAGCTGATACATTGGG+AGG 0.653095 7:-81794877 None:intergenic
ACCGAGCAACTTGGTAACAA+GGG 0.653584 7:-81794809 None:intergenic
ACAAGAGTAAAGCAGATGCA+GGG 0.657371 7:+81796075 MsG0780040736.01.T01:CDS
TCTTTCGGCTACCATAATGT+CGG 0.663564 7:+81795119 MsG0780040736.01.T01:CDS
GTAAGACGGAGAATCAAACC+TGG 0.669834 7:-81795256 None:intergenic
GGCAAGAGCAAACATGAAGG+CGG 0.671889 7:-81795823 None:intergenic
ACAGATAACCATCATCATGA+GGG 0.673555 7:-81794992 None:intergenic
TCTTCATACCAATACCTGCA+GGG 0.687460 7:-81796100 None:intergenic
TGTGTTCTTAGCAACTAAAG+CGG 0.693409 7:-81795409 None:intergenic
TTGATGTGGCTAAAACACAA+TGG 0.704796 7:+81794716 MsG0780040736.01.T01:CDS
GCTTCGCTGCACCATCAACG+TGG 0.716385 7:-81794843 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAATTCATTGATTTTGTT+GGG + Chr7:81796119-81796138 MsG0780040736.01.T01:CDS 20.0%
! ATTCTAATAAAAAGACTCGT+GGG + Chr7:81795145-81795164 MsG0780040736.01.T01:CDS 25.0%
! TATTCTAATAAAAAGACTCG+TGG + Chr7:81795144-81795163 MsG0780040736.01.T01:CDS 25.0%
!!! GAAGAATTCATTGATTTTGT+TGG + Chr7:81796118-81796137 MsG0780040736.01.T01:CDS 25.0%
AAGATTTACCATCCAATTGA+TGG + Chr7:81795785-81795804 MsG0780040736.01.T01:CDS 30.0%
AAGGAAAAGGCTAAATCATA+TGG + Chr7:81795501-81795520 MsG0780040736.01.T01:CDS 30.0%
ACAACAAATGTTGTAGCATT+AGG - Chr7:81795936-81795955 None:intergenic 30.0%
AGATTTACCATCCAATTGAT+GGG + Chr7:81795786-81795805 MsG0780040736.01.T01:CDS 30.0%
ATGATGGTTATCTGTTCAAT+TGG + Chr7:81795000-81795019 MsG0780040736.01.T01:CDS 30.0%
ATTAGAATACTCCGACATTA+TGG - Chr7:81795133-81795152 None:intergenic 30.0%
CATAATTTCATCTGCATTCA+AGG + Chr7:81795233-81795252 MsG0780040736.01.T01:CDS 30.0%
TAAAGAAGAATCCCATCAAT+TGG - Chr7:81795800-81795819 None:intergenic 30.0%
TTCTAATAAAAAGACTCGTG+GGG + Chr7:81795146-81795165 MsG0780040736.01.T01:CDS 30.0%
! AAATCTTTAGAGGAAATGTC+AGG + Chr7:81796197-81796216 MsG0780040736.01.T01:CDS 30.0%
! ACCTTCTTCTTTGCAAATTT+TGG + Chr7:81795909-81795928 MsG0780040736.01.T01:CDS 30.0%
! CCTTCTTCTTTGCAAATTTT+GGG + Chr7:81795910-81795929 MsG0780040736.01.T01:CDS 30.0%
! TTGGGATGTTGTAACATTTT+GGG + Chr7:81796137-81796156 MsG0780040736.01.T01:CDS 30.0%
AACAGATAACCATCATCATG+AGG - Chr7:81794996-81795015 None:intergenic 35.0%
AATAGTAAGTCATTGCAGCT+GGG - Chr7:81795356-81795375 None:intergenic 35.0%
ACAGATAACCATCATCATGA+GGG - Chr7:81794995-81795014 None:intergenic 35.0%
ACATCACCACAAATCCTATT+CGG - Chr7:81795881-81795900 None:intergenic 35.0%
ACTCATAAGGATAACCGAAT+AGG + Chr7:81795864-81795883 MsG0780040736.01.T01:CDS 35.0%
ATTTGCAAAGAAGAAGGTCA+AGG - Chr7:81795907-81795926 None:intergenic 35.0%
CATTTGGAGGATAATTGTGA+TGG + Chr7:81795320-81795339 MsG0780040736.01.T01:CDS 35.0%
CCCAAAATTTGCAAAGAAGA+AGG - Chr7:81795913-81795932 None:intergenic 35.0%
CTATGATGATTGCAGTGAAA+TGG - Chr7:81794744-81794763 None:intergenic 35.0%
CTTGTATTTGGCACAAAACA+AGG + Chr7:81796052-81796071 MsG0780040736.01.T01:CDS 35.0%
GGCAAATGGAAAATCTTTAG+AGG + Chr7:81796187-81796206 MsG0780040736.01.T01:CDS 35.0%
TATTCTGTCTATGAAAGCCA+CGG - Chr7:81795763-81795782 None:intergenic 35.0%
TGTGTTCTTAGCAACTAAAG+CGG - Chr7:81795412-81795431 None:intergenic 35.0%
TTATGAACACTGGACTCATA+AGG + Chr7:81795851-81795870 MsG0780040736.01.T01:CDS 35.0%
TTATGAGTCCAGTGTTCATA+AGG - Chr7:81795852-81795871 None:intergenic 35.0%
TTGATGTGGCTAAAACACAA+TGG + Chr7:81794716-81794735 MsG0780040736.01.T01:CDS 35.0%
! AAAGATTTTCCATTTGCCTC+AGG - Chr7:81796185-81796204 None:intergenic 35.0%
! AAGGATATTTTCAGCGCAAT+TGG + Chr7:81795630-81795649 MsG0780040736.01.T01:CDS 35.0%
! ATATTTTCAGCGCAATTGGT+TGG + Chr7:81795634-81795653 MsG0780040736.01.T01:CDS 35.0%
! GTTATCTGTTCAATTGGTTC+TGG + Chr7:81795006-81795025 MsG0780040736.01.T01:CDS 35.0%
! GTTGGGATGTTGTAACATTT+TGG + Chr7:81796136-81796155 MsG0780040736.01.T01:CDS 35.0%
! TGGGATGTTGTAACATTTTG+GGG + Chr7:81796138-81796157 MsG0780040736.01.T01:CDS 35.0%
!! AGATATGTCTAAGGTTTTGC+AGG + Chr7:81795446-81795465 MsG0780040736.01.T01:CDS 35.0%
!! ATATTCCATGGCAAGTTGAT+CGG - Chr7:81795986-81796005 None:intergenic 35.0%
!! ATTGGTTCTGGTCTTTCTTT+CGG + Chr7:81795018-81795037 MsG0780040736.01.T01:CDS 35.0%
!! TATCCTTCTGGAAGAGATTT+TGG - Chr7:81795617-81795636 None:intergenic 35.0%
AAAGAGTTCATGAGTCGTCA+TGG + Chr7:81795534-81795553 MsG0780040736.01.T01:CDS 40.0%
AATGGCAAGAGCAAACATGA+AGG - Chr7:81795829-81795848 None:intergenic 40.0%
AATGTATCAGCTGCTGTGAA+TGG + Chr7:81794883-81794902 MsG0780040736.01.T01:CDS 40.0%
AATGTCAGGTGAGAATGATG+AGG + Chr7:81796211-81796230 MsG0780040736.01.T01:CDS 40.0%
ACAAACCATGAATGCACTTG+AGG + Chr7:81795668-81795687 MsG0780040736.01.T01:CDS 40.0%
ACAAGAGTAAAGCAGATGCA+GGG + Chr7:81796075-81796094 MsG0780040736.01.T01:CDS 40.0%
ACAGAAAGAGGAGAAGGAAA+AGG + Chr7:81795488-81795507 MsG0780040736.01.T01:CDS 40.0%
ACATTATGGTAGCCGAAAGA+GGG - Chr7:81795119-81795138 None:intergenic 40.0%
AGTCCAGTGTTCATAAGGAA+TGG - Chr7:81795847-81795866 None:intergenic 40.0%
ATGGGCAGGAAAAAAGTCTA+TGG + Chr7:81794964-81794983 MsG0780040736.01.T01:CDS 40.0%
ATTCACAGCAGCTGATACAT+TGG - Chr7:81794884-81794903 None:intergenic 40.0%
CTGCAATGACTTACTATTCG+CGG + Chr7:81795358-81795377 MsG0780040736.01.T01:CDS 40.0%
CTTTCTGTGGAACACTTTCA+GGG + Chr7:81794911-81794930 MsG0780040736.01.T01:CDS 40.0%
GAAGAATCCCATCAATTGGA+TGG - Chr7:81795796-81795815 None:intergenic 40.0%
GAATAGTAAGTCATTGCAGC+TGG - Chr7:81795357-81795376 None:intergenic 40.0%
GCAATCATCATAGCTGGTAT+GGG + Chr7:81794751-81794770 MsG0780040736.01.T01:CDS 40.0%
GGATAACCGAATAGGATTTG+TGG + Chr7:81795872-81795891 MsG0780040736.01.T01:CDS 40.0%
GTGGCTTTCATAGACAGAAT+AGG + Chr7:81795762-81795781 MsG0780040736.01.T01:CDS 40.0%
TACTTGGTACAACAAGCACT+TGG + Chr7:81795565-81795584 MsG0780040736.01.T01:CDS 40.0%
TAGCACCTCAATTTGATCCT+TGG - Chr7:81794689-81794708 None:intergenic 40.0%
TAGCCAAAATCTCTTCCAGA+AGG + Chr7:81795611-81795630 MsG0780040736.01.T01:CDS 40.0%
TCTTCATACCAATACCTGCA+GGG - Chr7:81796103-81796122 None:intergenic 40.0%
TCTTTCGGCTACCATAATGT+CGG + Chr7:81795119-81795138 MsG0780040736.01.T01:CDS 40.0%
TGCAATCATCATAGCTGGTA+TGG + Chr7:81794750-81794769 MsG0780040736.01.T01:CDS 40.0%
TGGAGGATAATTGTGATGGT+AGG + Chr7:81795324-81795343 MsG0780040736.01.T01:CDS 40.0%
TTCACAGCAGCTGATACATT+GGG - Chr7:81794883-81794902 None:intergenic 40.0%
TTCACTGCAATCATCATAGC+TGG + Chr7:81794745-81794764 MsG0780040736.01.T01:CDS 40.0%
TTCTTAGTACCTGAGGCAAA+TGG + Chr7:81796173-81796192 MsG0780040736.01.T01:CDS 40.0%
TTCTTCATACCAATACCTGC+AGG - Chr7:81796104-81796123 None:intergenic 40.0%
TTGCCATTCCTTATGAACAC+TGG + Chr7:81795841-81795860 MsG0780040736.01.T01:CDS 40.0%
TTGCGCTGAAAATATCCTTC+TGG - Chr7:81795629-81795648 None:intergenic 40.0%
! AGGGTTGTCATGACAGATTT+TGG - Chr7:81795051-81795070 None:intergenic 40.0%
! ATGCAGGGTTTCGGAATTTT+GGG + Chr7:81795192-81795211 MsG0780040736.01.T01:CDS 40.0%
! CGTCATGGACTACATTTACT+TGG + Chr7:81795549-81795568 MsG0780040736.01.T01:CDS 40.0%
! CTTTCAGGGCAACTTTTCTT+TGG + Chr7:81794925-81794944 MsG0780040736.01.T01:CDS 40.0%
! TGCATTCGGGTTCTTGTATT+TGG + Chr7:81796040-81796059 MsG0780040736.01.T01:CDS 40.0%
! TTTTCCTTCTCCTCTTTCTG+TGG - Chr7:81795489-81795508 None:intergenic 40.0%
AACCATGAATGCACTTGAGG+AGG + Chr7:81795671-81795690 MsG0780040736.01.T01:CDS 45.0%
AACCTCCTCAAGTGCATTCA+TGG - Chr7:81795676-81795695 None:intergenic 45.0%
ACTGGATCAACCTCGTAAGA+CGG - Chr7:81795273-81795292 None:intergenic 45.0%
AGATTCCGATCAACTTGCCA+TGG + Chr7:81795978-81795997 MsG0780040736.01.T01:CDS 45.0%
AGCTGCAGCAGATATGTCTA+AGG + Chr7:81795437-81795456 MsG0780040736.01.T01:CDS 45.0%
CAAAATTCCGAAACCCTGCA+TGG - Chr7:81795193-81795212 None:intergenic 45.0%
CATGGAATATCATCCGCATC+GGG + Chr7:81795996-81796015 MsG0780040736.01.T01:CDS 45.0%
CCAAAACCGGAAGAAGCAAA+GGG - Chr7:81795070-81795089 None:intergenic 45.0%
CCATGGAATATCATCCGCAT+CGG + Chr7:81795995-81796014 MsG0780040736.01.T01:CDS 45.0%
CCTCCAAATGTAGTCTGCTT+GGG - Chr7:81795310-81795329 None:intergenic 45.0%
CGCATATACTACCACGTTGA+TGG + Chr7:81794832-81794851 MsG0780040736.01.T01:CDS 45.0%
CTAGCTGGAAAAATCTCTGC+TGG - Chr7:81795960-81795979 None:intergenic 45.0%
CTCCAAATGTAGTCTGCTTG+GGG - Chr7:81795309-81795328 None:intergenic 45.0%
CTTCTCCTCTTTCTGTGGTT+CGG - Chr7:81795484-81795503 None:intergenic 45.0%
GACAAGAGTAAAGCAGATGC+AGG + Chr7:81796074-81796093 MsG0780040736.01.T01:CDS 45.0%
GACATTATGGTAGCCGAAAG+AGG - Chr7:81795120-81795139 None:intergenic 45.0%
GCTTTCTGTGGAACACTTTC+AGG + Chr7:81794910-81794929 MsG0780040736.01.T01:CDS 45.0%
GGTGAGAATGATGAGGAAGT+TGG + Chr7:81796218-81796237 MsG0780040736.01.T01:CDS 45.0%
GTAAGACGGAGAATCAAACC+TGG - Chr7:81795259-81795278 None:intergenic 45.0%
GTGAATGGTGTAGCTTTCTG+TGG + Chr7:81794898-81794917 MsG0780040736.01.T01:CDS 45.0%
GTGCACTTTCTTAGTACCTG+AGG + Chr7:81796166-81796185 MsG0780040736.01.T01:CDS 45.0%
GTTTGATTCTCCGTCTTACG+AGG + Chr7:81795260-81795279 MsG0780040736.01.T01:CDS 45.0%
TACATTGGGAGGCAATGTAC+CGG - Chr7:81794869-81794888 None:intergenic 45.0%
TCCCTTGTTACCAAGTTGCT+CGG + Chr7:81794808-81794827 MsG0780040736.01.T01:CDS 45.0%
TCCTCCAAATGTAGTCTGCT+TGG - Chr7:81795311-81795330 None:intergenic 45.0%
TGACAACCCTTTGCTTCTTC+CGG + Chr7:81795061-81795080 MsG0780040736.01.T01:CDS 45.0%
TGGTATGACCCTCATGATGA+TGG + Chr7:81794984-81795003 MsG0780040736.01.T01:CDS 45.0%
TTCCCCAAGCAGACTACATT+TGG + Chr7:81795304-81795323 MsG0780040736.01.T01:CDS 45.0%
TTTCATCTGCATTCAAGGCC+AGG + Chr7:81795238-81795257 MsG0780040736.01.T01:CDS 45.0%
! ACCGAGCAACTTGGTAACAA+GGG - Chr7:81794812-81794831 None:intergenic 45.0%
! AGTGCATTCATGGTTTGTGC+AGG - Chr7:81795666-81795685 None:intergenic 45.0%
! CATGCAGGGTTTCGGAATTT+TGG + Chr7:81795191-81795210 MsG0780040736.01.T01:CDS 45.0%
! GCGTTGTTATTCTGAGCATG+AGG - Chr7:81796266-81796285 None:intergenic 45.0%
! TCTTACGAGGTTGATCCAGT+TGG + Chr7:81795273-81795292 MsG0780040736.01.T01:CDS 45.0%
!! CAACTTTTCTTTGGCTGGCT+TGG + Chr7:81794934-81794953 MsG0780040736.01.T01:CDS 45.0%
!! CAAGTTGATCGGAATCTAGC+TGG - Chr7:81795975-81795994 None:intergenic 45.0%
!!! TTTTGGCTTGGGTTCGGTAT+TGG + Chr7:81795084-81795103 MsG0780040736.01.T01:CDS 45.0%
ACAGCAGCTGATACATTGGG+AGG - Chr7:81794880-81794899 None:intergenic 50.0%
ACATTGGGAGGCAATGTACC+GGG - Chr7:81794868-81794887 None:intergenic 50.0%
CCCAAGCAGACTACATTTGG+AGG + Chr7:81795307-81795326 MsG0780040736.01.T01:CDS 50.0%
CCGATGCGGATGATATTCCA+TGG - Chr7:81795998-81796017 None:intergenic 50.0%
CGAACCACAGAAAGAGGAGA+AGG + Chr7:81795482-81795501 MsG0780040736.01.T01:CDS 50.0%
GCAGTACAGTACCAGGCTAT+TGG + Chr7:81795733-81795752 MsG0780040736.01.T01:CDS 50.0%
GCCAAAACCGGAAGAAGCAA+AGG - Chr7:81795071-81795090 None:intergenic 50.0%
GCGGTATAACGAGCAGTTTC+TGG - Chr7:81795393-81795412 None:intergenic 50.0%
GCTCTATGCAGTACAGTACC+AGG + Chr7:81795726-81795745 MsG0780040736.01.T01:CDS 50.0%
GGAAAGCTTGGGGCTATAGT+TGG + Chr7:81796017-81796036 MsG0780040736.01.T01:CDS 50.0%
GGCAAAGACTGCTGCAATGA+AGG - Chr7:81795172-81795191 None:intergenic 50.0%
GGCAAGAGCAAACATGAAGG+CGG - Chr7:81795826-81795845 None:intergenic 50.0%
GGTGCTAAATGCGCTTGATG+TGG + Chr7:81794702-81794721 MsG0780040736.01.T01:CDS 50.0%
GTATATGCGACCGAGCAACT+TGG - Chr7:81794821-81794840 None:intergenic 50.0%
GTCTTTGCCATGCAGGGTTT+CGG + Chr7:81795183-81795202 MsG0780040736.01.T01:CDS 50.0%
TACCGAACCCAAGCCAAAAC+CGG - Chr7:81795083-81795102 None:intergenic 50.0%
TGAAGCCGAACCACAGAAAG+AGG + Chr7:81795476-81795495 MsG0780040736.01.T01:CDS 50.0%
TGGGGAACAGTTGAACCAAC+TGG - Chr7:81795291-81795310 None:intergenic 50.0%
! CAGGGCAACTTTTCTTTGGC+TGG + Chr7:81794929-81794948 MsG0780040736.01.T01:CDS 50.0%
! CCCTTTGCTTCTTCCGGTTT+TGG + Chr7:81795067-81795086 MsG0780040736.01.T01:CDS 50.0%
! GACCGAGCAACTTGGTAACA+AGG - Chr7:81794813-81794832 None:intergenic 50.0%
! GCATTCATGGTTTGTGCAGG+TGG - Chr7:81795663-81795682 None:intergenic 50.0%
! GGGCTATAGTTGGTGCATTC+GGG + Chr7:81796027-81796046 MsG0780040736.01.T01:CDS 50.0%
! GGGGCTATAGTTGGTGCATT+CGG + Chr7:81796026-81796045 MsG0780040736.01.T01:CDS 50.0%
! TGGTGGTGACTACCCTCTTT+CGG + Chr7:81795104-81795123 MsG0780040736.01.T01:CDS 50.0%
!! ACCAGGCTATTGGTTTACCG+TGG + Chr7:81795743-81795762 MsG0780040736.01.T01:CDS 50.0%
!! GGCTGGCTTGGTGATAAGAT+GGG + Chr7:81794946-81794965 MsG0780040736.01.T01:CDS 50.0%
!! GGTTTCGGAATTTTGGGAGC+TGG + Chr7:81795198-81795217 MsG0780040736.01.T01:CDS 50.0%
!! TGGCTGGCTTGGTGATAAGA+TGG + Chr7:81794945-81794964 MsG0780040736.01.T01:CDS 50.0%
!!! GCTTCTTCCGGTTTTGGCTT+GGG + Chr7:81795073-81795092 MsG0780040736.01.T01:CDS 50.0%
!!! TGCTTCTTCCGGTTTTGGCT+TGG + Chr7:81795072-81795091 MsG0780040736.01.T01:CDS 50.0%
!!! TTCCGGTTTTGGCTTGGGTT+CGG + Chr7:81795078-81795097 MsG0780040736.01.T01:CDS 50.0%
ATCCGCATCGGGAAAGCTTG+GGG + Chr7:81796007-81796026 MsG0780040736.01.T01:CDS 55.0%
CATCCGCATCGGGAAAGCTT+GGG + Chr7:81796006-81796025 MsG0780040736.01.T01:CDS 55.0%
GCAGCAGTCTTTGCCATGCA+GGG + Chr7:81795177-81795196 MsG0780040736.01.T01:CDS 55.0%
GCCACGGTAAACCAATAGCC+TGG - Chr7:81795747-81795766 None:intergenic 55.0%
TCATCCGCATCGGGAAAGCT+TGG + Chr7:81796005-81796024 MsG0780040736.01.T01:CDS 55.0%
TGCAGCAGTCTTTGCCATGC+AGG + Chr7:81795176-81795195 MsG0780040736.01.T01:CDS 55.0%
! TGGCTTGGGTTCGGTATTGG+TGG + Chr7:81795087-81795106 MsG0780040736.01.T01:CDS 55.0%
!! GGCTTGGTGATAAGATGGGC+AGG + Chr7:81794950-81794969 MsG0780040736.01.T01:CDS 55.0%
AGCCCCAAGCTTTCCCGATG+CGG - Chr7:81796012-81796031 None:intergenic 60.0%
GCTTCGCTGCACCATCAACG+TGG - Chr7:81794846-81794865 None:intergenic 60.0%
! GCAGGGTACCCTGCAGGTAT+TGG + Chr7:81796092-81796111 MsG0780040736.01.T01:CDS 60.0%
!! GTTGATGGTGCAGCGAAGCC+CGG + Chr7:81794847-81794866 MsG0780040736.01.T01:CDS 60.0%
! GCAGATGCAGGGTACCCTGC+AGG + Chr7:81796086-81796105 MsG0780040736.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 81794682 81796295 81794682 ID=MsG0780040736.01;Name=MsG0780040736.01
Chr7 mRNA 81794682 81796295 81794682 ID=MsG0780040736.01.T01;Parent=MsG0780040736.01;Name=MsG0780040736.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|537
Chr7 exon 81794682 81796295 81794682 ID=MsG0780040736.01.T01:exon:19011;Parent=MsG0780040736.01.T01
Chr7 CDS 81794682 81796295 81794682 ID=MsG0780040736.01.T01:cds;Parent=MsG0780040736.01.T01
Gene Sequence

>MsG0780040736.01.T01

ATGGCCAAGGATCAAATTGAGGTGCTAAATGCGCTTGATGTGGCTAAAACACAATGGTACCATTTCACTGCAATCATCATAGCTGGTATGGGATTCTTTACAGATGCATATGATCTGTTTTGTGTATCCCTTGTTACCAAGTTGCTCGGTCGCATATACTACCACGTTGATGGTGCAGCGAAGCCCGGTACATTGCCTCCCAATGTATCAGCTGCTGTGAATGGTGTAGCTTTCTGTGGAACACTTTCAGGGCAACTTTTCTTTGGCTGGCTTGGTGATAAGATGGGCAGGAAAAAAGTCTATGGTATGACCCTCATGATGATGGTTATCTGTTCAATTGGTTCTGGTCTTTCTTTCGGACACACTCCAAAATCTGTCATGACAACCCTTTGCTTCTTCCGGTTTTGGCTTGGGTTCGGTATTGGTGGTGACTACCCTCTTTCGGCTACCATAATGTCGGAGTATTCTAATAAAAAGACTCGTGGGGCCTTCATTGCAGCAGTCTTTGCCATGCAGGGTTTCGGAATTTTGGGAGCTGGTATATTTGCAATCATAATTTCATCTGCATTCAAGGCCAGGTTTGATTCTCCGTCTTACGAGGTTGATCCAGTTGGTTCAACTGTTCCCCAAGCAGACTACATTTGGAGGATAATTGTGATGGTAGGAGCACTCCCAGCTGCAATGACTTACTATTCGCGGACAAAGATGCCAGAAACTGCTCGTTATACCGCTTTAGTTGCTAAGAACACAGCGCAAGCTGCAGCAGATATGTCTAAGGTTTTGCAGGTTGAGATTGAAGCCGAACCACAGAAAGAGGAGAAGGAAAAGGCTAAATCATATGGCTTGTTCTCAAAAGAGTTCATGAGTCGTCATGGACTACATTTACTTGGTACAACAAGCACTTGGTTCTTGCTTGATATAGCATTTTATAGCCAAAATCTCTTCCAGAAGGATATTTTCAGCGCAATTGGTTGGATACCACCTGCACAAACCATGAATGCACTTGAGGAGGTTTACAAAATCGCGAGAGCTCAAACACTTATTGCTCTATGCAGTACAGTACCAGGCTATTGGTTTACCGTGGCTTTCATAGACAGAATAGGAAGATTTACCATCCAATTGATGGGATTCTTCTTTATGACCGCCTTCATGTTTGCTCTTGCCATTCCTTATGAACACTGGACTCATAAGGATAACCGAATAGGATTTGTGGTGATGTATTCCTTGACCTTCTTCTTTGCAAATTTTGGGCCTAATGCTACAACATTTGTTGTGCCAGCAGAGATTTTTCCAGCTAGATTCCGATCAACTTGCCATGGAATATCATCCGCATCGGGAAAGCTTGGGGCTATAGTTGGTGCATTCGGGTTCTTGTATTTGGCACAAAACAAGGACAAGAGTAAAGCAGATGCAGGGTACCCTGCAGGTATTGGTATGAAGAATTCATTGATTTTGTTGGGATGTTGTAACATTTTGGGGTTCTTGTGCACTTTCTTAGTACCTGAGGCAAATGGAAAATCTTTAGAGGAAATGTCAGGTGAGAATGATGAGGAAGTTGGAAGCAGAGAAGATGTAGAGAAACCTCATGCTCAGAATAACAACGCTGTTCCATAG
Protein sequence

>MsG0780040736.01.T01

MAKDQIEVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCVSLVTKLLGRIYYHVDGAAKPGTLPPNVSAAVNGVAFCGTLSGQLFFGWLGDKMGRKKVYGMTLMMMVICSIGSGLSFGHTPKSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILGAGIFAIIISSAFKARFDSPSYEVDPVGSTVPQADYIWRIIVMVGALPAAMTYYSRTKMPETARYTALVAKNTAQAAADMSKVLQVEIEAEPQKEEKEKAKSYGLFSKEFMSRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQTMNALEEVYKIARAQTLIALCSTVPGYWFTVAFIDRIGRFTIQLMGFFFMTAFMFALAIPYEHWTHKDNRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAIVGAFGFLYLAQNKDKSKADAGYPAGIGMKNSLILLGCCNILGFLCTFLVPEANGKSLEEMSGENDEEVGSREDVEKPHAQNNNAVP*