AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001797.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001797.01.T01 MTR_1g043220 98.883 537 6 0 1 537 1 537 0.0 1093
MsG0180001797.01.T01 MTR_1g043290 98.120 532 10 0 1 532 1 532 0.0 1076
MsG0180001797.01.T01 MTR_1g043200 97.925 530 11 0 1 530 1 530 0.0 1068
MsG0180001797.01.T01 MTR_1g074930 85.199 527 78 0 1 527 1 527 0.0 949
MsG0180001797.01.T01 MTR_3g082700 78.346 508 109 1 4 511 5 511 0.0 840
MsG0180001797.01.T01 MTR_1g069935 75.382 524 125 2 4 527 5 524 0.0 822
MsG0180001797.01.T01 MTR_7g096870 75.188 532 128 2 4 535 5 532 0.0 818
MsG0180001797.01.T01 MTR_7g096880 77.165 508 110 2 4 511 5 506 0.0 801
MsG0180001797.01.T01 MTR_1g074940 76.125 511 104 4 4 511 5 500 0.0 794
MsG0180001797.01.T01 MTR_1g069930 68.093 514 161 2 4 517 5 515 0.0 741
MsG0180001797.01.T01 MTR_1g028600 61.742 528 187 5 5 532 3 515 0.0 643
MsG0180001797.01.T01 MTR_5g068140 57.798 545 203 6 1 528 1 535 0.0 616
MsG0180001797.01.T01 MTR_4g083960 53.933 534 220 11 1 528 1 514 0.0 534
MsG0180001797.01.T01 MTR_3g084110 24.477 478 257 20 68 515 69 472 2.48e-16 82.0
MsG0180001797.01.T01 MTR_7g005910 22.603 438 276 15 86 514 92 475 2.11e-14 76.3
MsG0180001797.01.T01 MTR_1g116660 21.171 444 270 15 89 514 97 478 1.82e-12 70.1
MsG0180001797.01.T01 MTR_7g446340 23.758 463 293 16 75 529 104 514 9.24e-12 67.8
MsG0180001797.01.T01 MTR_6g007340 23.758 463 293 16 75 529 104 514 9.24e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001797.01.T01 AT5G43360 81.202 516 95 2 4 519 5 518 0.0 859
MsG0180001797.01.T01 AT3G54700 80.426 516 96 2 4 519 5 515 0.0 854
MsG0180001797.01.T01 AT3G54700 80.426 516 96 2 4 519 5 515 0.0 854
MsG0180001797.01.T01 AT5G43350 80.039 516 101 2 4 519 5 518 0.0 852
MsG0180001797.01.T01 AT2G38940 77.778 513 113 1 4 516 5 516 0.0 840
MsG0180001797.01.T01 AT2G32830 75.954 524 124 2 7 529 8 530 0.0 830
MsG0180001797.01.T01 AT5G43370 79.845 516 102 2 4 519 5 518 0.0 820
MsG0180001797.01.T01 AT5G43370 79.845 516 102 2 4 519 5 518 0.0 820
MsG0180001797.01.T01 AT5G43340 65.957 517 157 4 7 521 9 508 0.0 707
MsG0180001797.01.T01 AT1G76430 48.983 541 249 12 4 534 3 526 1.37e-172 498
MsG0180001797.01.T01 AT1G20860 49.905 529 247 9 5 529 3 517 7.77e-170 491
MsG0180001797.01.T01 AT1G20860 49.905 529 247 9 5 529 55 569 3.56e-169 491
MsG0180001797.01.T01 AT4G08878 64.368 261 90 2 30 290 13 270 1.70e-113 338
MsG0180001797.01.T01 AT4G08895 55.714 140 30 1 321 460 23 130 8.54e-47 160
MsG0180001797.01.T01 AT2G43330 23.126 467 276 17 68 514 72 475 1.52e-11 67.4

Find 106 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTCTTCTTTGCTAATTT+TGG 0.173620 1:+27155753 MsG0180001797.01.T01:CDS
CACTTTGTTTCTTTAGGTTT+TGG 0.183884 1:+27154899 MsG0180001797.01.T01:CDS
GTTGCTTCAGGACTCTCTTT+TGG 0.216739 1:+27154850 MsG0180001797.01.T01:CDS
GCAGTACTGTTCCGGGTTAC+TGG 0.227964 1:+27155577 MsG0180001797.01.T01:CDS
GCCGTGTAACGAGCGGTTTC+TGG 0.257283 1:-27155225 None:intergenic
TGCGTTATGCAGTACTGTTC+CGG 0.260285 1:+27155569 MsG0180001797.01.T01:CDS
AATTATTCTTTGGTTGGCTT+GGG 0.264750 1:+27154767 MsG0180001797.01.T01:CDS
TGGTTGGCTTGGGGACAAAA+TGG 0.266103 1:+27154777 MsG0180001797.01.T01:CDS
GTGGTTTGTTCTGTTGCTTC+AGG 0.274743 1:+27154838 MsG0180001797.01.T01:CDS
CGACATGGTTTGGCTTTGTT+TGG 0.282199 1:+27155393 MsG0180001797.01.T01:CDS
TGGCAACACTTTGTTTCTTT+AGG 0.286390 1:+27154893 MsG0180001797.01.T01:CDS
GGTGCAATTGTTGGTGCATT+TGG 0.288648 1:+27155870 MsG0180001797.01.T01:CDS
GATCCTACCAAGACTGATAA+AGG 0.289352 1:+27155918 MsG0180001797.01.T01:CDS
TGCCTCAATTTGATTATGTT+TGG 0.291088 1:+27155139 MsG0180001797.01.T01:CDS
AGCAAGAAAGATAATAGAAT+TGG 0.292218 1:+27155708 MsG0180001797.01.T01:CDS
CTAGCAGGCCAATTATTCTT+TGG 0.295996 1:+27154757 MsG0180001797.01.T01:CDS
CAAGCCAACCAAAGAATAAT+TGG 0.296172 1:-27154765 None:intergenic
ACACTTGGTGGAAGTGTTCC+TGG 0.300768 1:-27154697 None:intergenic
TCAGTCATGTCTGGAGAATT+AGG 0.311053 1:+27154511 None:intergenic
CAATTATTCTTTGGTTGGCT+TGG 0.312479 1:+27154766 MsG0180001797.01.T01:CDS
TCCCTTGTCACAAAGTTGTT+AGG 0.314005 1:+27154640 MsG0180001797.01.T01:CDS
AGTGTTGCCATAACACTCTT+TGG 0.315160 1:-27154880 None:intergenic
ACAACAAATGTTGTAGCATT+TGG 0.339412 1:-27155777 None:intergenic
GTTATGCACTTTACTTGTTC+CGG 0.355959 1:+27156007 MsG0180001797.01.T01:CDS
GTTCCTGGTCTTGTTGGATT+TGG 0.357998 1:-27154682 None:intergenic
GCGTTATGCAGTACTGTTCC+GGG 0.364996 1:+27155570 MsG0180001797.01.T01:CDS
AAAGGGTATCCAACCGGTAT+TGG 0.377035 1:+27155936 MsG0180001797.01.T01:CDS
TTCTTGCTCCAATGATCATA+TGG 0.386763 1:-27155693 None:intergenic
GGAAGTGTTCCTGGTCTTGT+TGG 0.393755 1:-27154688 None:intergenic
TCCTTCTTGCTCAGTGGCCT+CGG 0.397975 1:-27156084 None:intergenic
ATTCGCAGCACGACATGGTT+TGG 0.398280 1:+27155383 MsG0180001797.01.T01:CDS
AAGGGTATCCAACCGGTATT+GGG 0.400842 1:+27155937 MsG0180001797.01.T01:CDS
CCCTTGTCACAAAGTTGTTA+GGG 0.410280 1:+27154641 MsG0180001797.01.T01:CDS
TGGAGACTTATTCTTATGTT+CGG 0.411605 1:+27155159 MsG0180001797.01.T01:CDS
TTCACTACAATTGTGATAGC+TGG 0.416291 1:+27154577 MsG0180001797.01.T01:CDS
AGTGTTCAATCAGCTGTAAC+TGG 0.417885 1:+27154715 MsG0180001797.01.T01:CDS
GTAACTGGTGTTGCACTTGT+TGG 0.429691 1:+27154730 MsG0180001797.01.T01:CDS
GCAAGAAAGATAATAGAATT+GGG 0.436422 1:+27155709 MsG0180001797.01.T01:CDS
CTTGGTGTAATCAACTTTGT+TGG 0.438140 1:+27155981 MsG0180001797.01.T01:CDS
TTGCCATACCATATGATCAT+TGG 0.440480 1:+27155685 MsG0180001797.01.T01:CDS
AGCTGCAGCGGATATGTCTA+AGG 0.440556 1:+27155272 MsG0180001797.01.T01:CDS
TGCTACAACATTTGTTGTAC+CGG 0.442118 1:+27155782 MsG0180001797.01.T01:CDS
CAGGCCAATTATTCTTTGGT+TGG 0.445254 1:+27154761 MsG0180001797.01.T01:CDS
GTAACAAATTCAGTCATGTC+TGG 0.451043 1:+27154502 None:intergenic
TGGATACCCTTTATCAGTCT+TGG 0.453429 1:-27155925 None:intergenic
GGTTGGCTTGGGGACAAAAT+GGG 0.456779 1:+27154778 MsG0180001797.01.T01:CDS
TGGTTTAACTCTTATTCTCA+TGG 0.457780 1:+27154816 MsG0180001797.01.T01:CDS
TGTTTGGAACATGTAGTACT+TGG 0.462947 1:+27155409 MsG0180001797.01.T01:CDS
TCAGCTGCTGCAGGAAAGGC+AGG 0.471662 1:+27155849 MsG0180001797.01.T01:CDS
AAGAACTCTCTTATCATGCT+TGG 0.472490 1:+27155963 MsG0180001797.01.T01:CDS
TTGGTGTAATCAACTTTGTT+GGG 0.474242 1:+27155982 MsG0180001797.01.T01:CDS
TACAATTGTGATAGCTGGAA+TGG 0.475457 1:+27154582 MsG0180001797.01.T01:CDS
CATGGAATCTCAGCTGCTGC+AGG 0.483171 1:+27155840 MsG0180001797.01.T01:CDS
TTCTTAATCCCAATACCGGT+TGG 0.488319 1:-27155945 None:intergenic
TTTACTTGTTCCGGAATCAA+AGG 0.491533 1:+27156016 MsG0180001797.01.T01:CDS
GGCACTAACAATGATGCTGC+TGG 0.492284 1:-27155120 None:intergenic
ATCCTACCAAGACTGATAAA+GGG 0.497221 1:+27155919 MsG0180001797.01.T01:CDS
GCACTTGTTGGAACACTAGC+AGG 0.499060 1:+27154742 MsG0180001797.01.T01:CDS
TTACTTGTTCCGGAATCAAA+GGG 0.501725 1:+27156017 MsG0180001797.01.T01:CDS
ATTATTCTTTGGTTGGCTTG+GGG 0.503981 1:+27154768 MsG0180001797.01.T01:CDS
CAGTAGTACGTCAATGCAGC+TGG 0.504205 1:-27155189 None:intergenic
CAGCTGCATTGACGTACTAC+TGG 0.505251 1:+27155190 MsG0180001797.01.T01:CDS
GTTACAGCTGATTGAACACT+TGG 0.505672 1:-27154712 None:intergenic
ATCAAGTCCAAAGAGTGTTA+TGG 0.512765 1:+27154873 MsG0180001797.01.T01:CDS
AGAGTTCTTAATCCCAATAC+CGG 0.517475 1:-27155949 None:intergenic
GGTAGCGTTTATCGATTACA+TGG 0.520286 1:+27155605 MsG0180001797.01.T01:CDS
AATCTCAGCTGCTGCAGGAA+AGG 0.521693 1:+27155845 MsG0180001797.01.T01:CDS
TGGAATTGTTGCTTTGATTG+TGG 0.522228 1:+27155050 MsG0180001797.01.T01:CDS
ACAATTGTGATAGCTGGAAT+GGG 0.523177 1:+27154583 MsG0180001797.01.T01:CDS
AGTGATAAAAGGAATAGTTA+TGG 0.524232 1:+27155345 MsG0180001797.01.T01:CDS
ACTGATAAAGGGTATCCAAC+CGG 0.524868 1:+27155930 MsG0180001797.01.T01:CDS
AGGTTAAGGTCTACTTGTCA+TGG 0.528893 1:+27155822 MsG0180001797.01.T01:CDS
GACATGATTGTAGCTGAAAG+AGG 0.545050 1:-27154949 None:intergenic
CTCCAAACATAATCAAATTG+AGG 0.545090 1:-27155141 None:intergenic
TGTTCCGGGTTACTGGTTCA+CGG 0.545707 1:+27155584 MsG0180001797.01.T01:CDS
AGTTGAACTTGAAGTTGAAG+AGG 0.547307 1:+27155302 MsG0180001797.01.T01:CDS
CCCTAACAACTTTGTGACAA+GGG 0.549878 1:-27154641 None:intergenic
GAACGAAGGAGAAGGTGCCG+AGG 0.555336 1:+27156067 MsG0180001797.01.T01:CDS
ACTTGAAGTTGAAGAGGAGA+AGG 0.556695 1:+27155308 MsG0180001797.01.T01:CDS
GGAATCAAAGGGAAAATCGT+TGG 0.559818 1:+27156028 MsG0180001797.01.T01:CDS
GCCAGAAACCGCTCGTTACA+CGG 0.562042 1:+27155224 MsG0180001797.01.T01:CDS
AGTGGAGAGAACGAAGGAGA+AGG 0.564524 1:+27156059 MsG0180001797.01.T01:CDS
TAAGATACCAAAACCTTGCA+TGG 0.565571 1:-27155022 None:intergenic
ACAGCTGATTGAACACTTGG+TGG 0.566339 1:-27154709 None:intergenic
GGAAAGGCAGGTGCAATTGT+TGG 0.566386 1:+27155861 MsG0180001797.01.T01:CDS
GCTCCAATGATCATATGGTA+TGG 0.568949 1:-27155688 None:intergenic
TTTAACTCTTATTCTCATGG+TGG 0.573974 1:+27154819 MsG0180001797.01.T01:CDS
GAACCAAATCCAACAAGACC+AGG 0.579480 1:+27154679 MsG0180001797.01.T01:CDS
TGCAATCGGATGGATCCCTC+CGG 0.592267 1:+27155488 MsG0180001797.01.T01:CDS
AGAAATGAATGCAATTCATG+AGG 0.592937 1:+27155515 MsG0180001797.01.T01:CDS
TCCCTAACAACTTTGTGACA+AGG 0.594495 1:-27154642 None:intergenic
CAAGTAGACCTTAACCTAGC+CGG 0.597095 1:-27155816 None:intergenic
GCCGAGGCCACTGAGCAAGA+AGG 0.609359 1:+27156083 MsG0180001797.01.T01:CDS
CCGCGGTCCTTCTTGCTCAG+TGG 0.613065 1:-27156090 None:intergenic
AAGCAATTCGCAGCACGACA+TGG 0.614851 1:+27155378 MsG0180001797.01.T01:CDS
TACCCTTTATCAGTCTTGGT+AGG 0.618148 1:-27155921 None:intergenic
ACATGATTGTAGCTGAAAGA+GGG 0.622142 1:-27154948 None:intergenic
TACAACATTTGTTGTACCGG+CGG 0.629873 1:+27155785 MsG0180001797.01.T01:CDS
GAGTTGAGTGGAGAGAACGA+AGG 0.632179 1:+27156053 MsG0180001797.01.T01:CDS
GAACGCGAAACAAGCTGCAG+CGG 0.635840 1:+27155260 MsG0180001797.01.T01:CDS
AAATCGTTGGAAGAGTTGAG+TGG 0.638926 1:+27156041 MsG0180001797.01.T01:CDS
GCTACCGTGAACCAGTAACC+CGG 0.646440 1:-27155588 None:intergenic
AACAAGAGCCGTGTAACGAG+CGG 0.663708 1:-27155232 None:intergenic
AGTGCTAAATGCACTTGATG+TGG 0.688145 1:+27154534 MsG0180001797.01.T01:CDS
GTAGCGTTTATCGATTACAT+GGG 0.697486 1:+27155606 MsG0180001797.01.T01:CDS
CCACTGAGCAAGAAGGACCG+CGG 0.738705 1:+27156090 MsG0180001797.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATGACTAGTGATAAA+AGG + Chr1:27155334-27155353 MsG0180001797.01.T01:CDS 20.0%
! AGCAAGAAAGATAATAGAAT+TGG + Chr1:27155708-27155727 MsG0180001797.01.T01:CDS 25.0%
! AGTGATAAAAGGAATAGTTA+TGG + Chr1:27155345-27155364 MsG0180001797.01.T01:CDS 25.0%
! GCAAGAAAGATAATAGAATT+GGG + Chr1:27155709-27155728 MsG0180001797.01.T01:CDS 25.0%
! TATGCTAACAAAAAAACTAG+AGG + Chr1:27154976-27154995 MsG0180001797.01.T01:CDS 25.0%
!! ACATTCTTCTTTGCTAATTT+TGG + Chr1:27155753-27155772 MsG0180001797.01.T01:CDS 25.0%
!! ATGGGAAGAAAAAAAGTATA+TGG + Chr1:27154796-27154815 MsG0180001797.01.T01:CDS 25.0%
ACAACAAATGTTGTAGCATT+TGG - Chr1:27155780-27155799 None:intergenic 30.0%
AGAAATGAATGCAATTCATG+AGG + Chr1:27155515-27155534 MsG0180001797.01.T01:CDS 30.0%
CTCCAAACATAATCAAATTG+AGG - Chr1:27155144-27155163 None:intergenic 30.0%
TGCCTCAATTTGATTATGTT+TGG + Chr1:27155139-27155158 MsG0180001797.01.T01:CDS 30.0%
TGGAGACTTATTCTTATGTT+CGG + Chr1:27155159-27155178 MsG0180001797.01.T01:CDS 30.0%
TGGTTTAACTCTTATTCTCA+TGG + Chr1:27154816-27154835 MsG0180001797.01.T01:CDS 30.0%
TTGGTGTAATCAACTTTGTT+GGG + Chr1:27155982-27156001 MsG0180001797.01.T01:CDS 30.0%
TTTAACTCTTATTCTCATGG+TGG + Chr1:27154819-27154838 MsG0180001797.01.T01:CDS 30.0%
! ATTGCATTCATTTCTTTTGC+CGG - Chr1:27155510-27155529 None:intergenic 30.0%
! TAGTCAGAATCTTTTCCAAA+AGG + Chr1:27155455-27155474 MsG0180001797.01.T01:CDS 30.0%
! TTGCACTAAAAATGTCCTTT+TGG - Chr1:27155473-27155492 None:intergenic 30.0%
!! AATTATTCTTTGGTTGGCTT+GGG + Chr1:27154767-27154786 MsG0180001797.01.T01:CDS 30.0%
!! ATGTAGTACTTGGTTTTTGT+TGG + Chr1:27155419-27155438 MsG0180001797.01.T01:CDS 30.0%
!! CACTTTGTTTCTTTAGGTTT+TGG + Chr1:27154899-27154918 MsG0180001797.01.T01:CDS 30.0%
!!! AAGGACATTTTTAGTGCAAT+CGG + Chr1:27155474-27155493 MsG0180001797.01.T01:CDS 30.0%
!!! CGTTTTGCTATTCAAATGAT+GGG + Chr1:27155630-27155649 MsG0180001797.01.T01:CDS 30.0%
!!! TCGTTTTGCTATTCAAATGA+TGG + Chr1:27155629-27155648 MsG0180001797.01.T01:CDS 30.0%
AAGAACTCTCTTATCATGCT+TGG + Chr1:27155963-27155982 MsG0180001797.01.T01:CDS 35.0%
ACAATTGTGATAGCTGGAAT+GGG + Chr1:27154583-27154602 MsG0180001797.01.T01:CDS 35.0%
ACATGATTGTAGCTGAAAGA+GGG - Chr1:27154951-27154970 None:intergenic 35.0%
AGAGTTCTTAATCCCAATAC+CGG - Chr1:27155952-27155971 None:intergenic 35.0%
AGTTGAACTTGAAGTTGAAG+AGG + Chr1:27155302-27155321 MsG0180001797.01.T01:CDS 35.0%
ATCCTACCAAGACTGATAAA+GGG + Chr1:27155919-27155938 MsG0180001797.01.T01:CDS 35.0%
CAAGCCAACCAAAGAATAAT+TGG - Chr1:27154768-27154787 None:intergenic 35.0%
GTTATGCACTTTACTTGTTC+CGG + Chr1:27156007-27156026 MsG0180001797.01.T01:CDS 35.0%
TAAGATACCAAAACCTTGCA+TGG - Chr1:27155025-27155044 None:intergenic 35.0%
TACAATTGTGATAGCTGGAA+TGG + Chr1:27154582-27154601 MsG0180001797.01.T01:CDS 35.0%
TTACTTGTTCCGGAATCAAA+GGG + Chr1:27156017-27156036 MsG0180001797.01.T01:CDS 35.0%
TTCACTACAATTGTGATAGC+TGG + Chr1:27154577-27154596 MsG0180001797.01.T01:CDS 35.0%
TTCTTGCTCCAATGATCATA+TGG - Chr1:27155696-27155715 None:intergenic 35.0%
TTGCCATACCATATGATCAT+TGG + Chr1:27155685-27155704 MsG0180001797.01.T01:CDS 35.0%
TTTACTTGTTCCGGAATCAA+AGG + Chr1:27156016-27156035 MsG0180001797.01.T01:CDS 35.0%
! AACGATTTTCCCTTTGATTC+CGG - Chr1:27156029-27156048 None:intergenic 35.0%
! CAATTATTCTTTGGTTGGCT+TGG + Chr1:27154766-27154785 MsG0180001797.01.T01:CDS 35.0%
! CTTGGTGTAATCAACTTTGT+TGG + Chr1:27155981-27156000 MsG0180001797.01.T01:CDS 35.0%
! GTAGCGTTTATCGATTACAT+GGG + Chr1:27155606-27155625 MsG0180001797.01.T01:CDS 35.0%
! TGGCAACACTTTGTTTCTTT+AGG + Chr1:27154893-27154912 MsG0180001797.01.T01:CDS 35.0%
! TGTTTGGAACATGTAGTACT+TGG + Chr1:27155409-27155428 MsG0180001797.01.T01:CDS 35.0%
!! ATCAAGTCCAAAGAGTGTTA+TGG + Chr1:27154873-27154892 MsG0180001797.01.T01:CDS 35.0%
!! ATGCAAGGTTTTGGTATCTT+AGG + Chr1:27155024-27155043 MsG0180001797.01.T01:CDS 35.0%
!! ATTATTCTTTGGTTGGCTTG+GGG + Chr1:27154768-27154787 MsG0180001797.01.T01:CDS 35.0%
!! TGCTACAACATTTGTTGTAC+CGG + Chr1:27155782-27155801 MsG0180001797.01.T01:CDS 35.0%
!! TGGAATTGTTGCTTTGATTG+TGG + Chr1:27155050-27155069 MsG0180001797.01.T01:CDS 35.0%
!!! ACATTTTTAGTGCAATCGGA+TGG + Chr1:27155478-27155497 MsG0180001797.01.T01:CDS 35.0%
!!! TGTTTCTTTAGGTTTTGGCT+TGG + Chr1:27154904-27154923 MsG0180001797.01.T01:CDS 35.0%
!!! TTTAGGTTTTGGCTTGGTTT+TGG + Chr1:27154910-27154929 MsG0180001797.01.T01:CDS 35.0%
!!! TTTTGGCTTGGTTTTGGAAT+TGG + Chr1:27154916-27154935 MsG0180001797.01.T01:CDS 35.0%
AAATCGTTGGAAGAGTTGAG+TGG + Chr1:27156041-27156060 MsG0180001797.01.T01:CDS 40.0%
ACTTGAAGTTGAAGAGGAGA+AGG + Chr1:27155308-27155327 MsG0180001797.01.T01:CDS 40.0%
AGGTTAAGGTCTACTTGTCA+TGG + Chr1:27155822-27155841 MsG0180001797.01.T01:CDS 40.0%
AGTGCTAAATGCACTTGATG+TGG + Chr1:27154534-27154553 MsG0180001797.01.T01:CDS 40.0%
AGTGTTCAATCAGCTGTAAC+TGG + Chr1:27154715-27154734 MsG0180001797.01.T01:CDS 40.0%
AGTGTTGCCATAACACTCTT+TGG - Chr1:27154883-27154902 None:intergenic 40.0%
CAGGCCAATTATTCTTTGGT+TGG + Chr1:27154761-27154780 MsG0180001797.01.T01:CDS 40.0%
CCCTAACAACTTTGTGACAA+GGG - Chr1:27154644-27154663 None:intergenic 40.0%
CCCTTGTCACAAAGTTGTTA+GGG + Chr1:27154641-27154660 MsG0180001797.01.T01:CDS 40.0%
CTAGCAGGCCAATTATTCTT+TGG + Chr1:27154757-27154776 MsG0180001797.01.T01:CDS 40.0%
GACATGATTGTAGCTGAAAG+AGG - Chr1:27154952-27154971 None:intergenic 40.0%
GATCCTACCAAGACTGATAA+AGG + Chr1:27155918-27155937 MsG0180001797.01.T01:CDS 40.0%
GCTCCAATGATCATATGGTA+TGG - Chr1:27155691-27155710 None:intergenic 40.0%
GGAATCAAAGGGAAAATCGT+TGG + Chr1:27156028-27156047 MsG0180001797.01.T01:CDS 40.0%
GTTACAGCTGATTGAACACT+TGG - Chr1:27154715-27154734 None:intergenic 40.0%
TACCCTTTATCAGTCTTGGT+AGG - Chr1:27155924-27155943 None:intergenic 40.0%
TCCCTAACAACTTTGTGACA+AGG - Chr1:27154645-27154664 None:intergenic 40.0%
TCCCTTGTCACAAAGTTGTT+AGG + Chr1:27154640-27154659 MsG0180001797.01.T01:CDS 40.0%
TGGATACCCTTTATCAGTCT+TGG - Chr1:27155928-27155947 None:intergenic 40.0%
TTCTTAATCCCAATACCGGT+TGG - Chr1:27155948-27155967 None:intergenic 40.0%
! AGATTTTTCCGGCTAGGTTA+AGG + Chr1:27155808-27155827 MsG0180001797.01.T01:CDS 40.0%
! CAAGCTACATTTTCAAACCG+CGG - Chr1:27156110-27156129 None:intergenic 40.0%
! CATTCATTTCTTTTGCCGGA+GGG - Chr1:27155506-27155525 None:intergenic 40.0%
! GCTGGATTTTCTTCAAAGGT+GGG - Chr1:27155105-27155124 None:intergenic 40.0%
! GGTAGCGTTTATCGATTACA+TGG + Chr1:27155605-27155624 MsG0180001797.01.T01:CDS 40.0%
! GTTTTTGCCATGCAAGGTTT+TGG + Chr1:27155015-27155034 MsG0180001797.01.T01:CDS 40.0%
! TGCTGCTGGATTTTCTTCAA+AGG - Chr1:27155109-27155128 None:intergenic 40.0%
! TGCTGGATTTTCTTCAAAGG+TGG - Chr1:27155106-27155125 None:intergenic 40.0%
!! ACTGATAAAGGGTATCCAAC+CGG + Chr1:27155930-27155949 MsG0180001797.01.T01:CDS 40.0%
!! CAAGGTTTTGGTATCTTAGG+TGG + Chr1:27155027-27155046 MsG0180001797.01.T01:CDS 40.0%
!! TACAACATTTGTTGTACCGG+CGG + Chr1:27155785-27155804 MsG0180001797.01.T01:CDS 40.0%
ACAGCTGATTGAACACTTGG+TGG - Chr1:27154712-27154731 None:intergenic 45.0%
CAAGTAGACCTTAACCTAGC+CGG - Chr1:27155819-27155838 None:intergenic 45.0%
GAACCAAATCCAACAAGACC+AGG + Chr1:27154679-27154698 MsG0180001797.01.T01:CDS 45.0%
GGTGCAATTGTTGGTGCATT+TGG + Chr1:27155870-27155889 MsG0180001797.01.T01:CDS 45.0%
TGCGTTATGCAGTACTGTTC+CGG + Chr1:27155569-27155588 MsG0180001797.01.T01:CDS 45.0%
! GCATTCATTTCTTTTGCCGG+AGG - Chr1:27155507-27155526 None:intergenic 45.0%
! GTTGCTTCAGGACTCTCTTT+TGG + Chr1:27154850-27154869 MsG0180001797.01.T01:CDS 45.0%
!! AAAGGGTATCCAACCGGTAT+TGG + Chr1:27155936-27155955 MsG0180001797.01.T01:CDS 45.0%
!! AAGGGTATCCAACCGGTATT+GGG + Chr1:27155937-27155956 MsG0180001797.01.T01:CDS 45.0%
!! CGACATGGTTTGGCTTTGTT+TGG + Chr1:27155393-27155412 MsG0180001797.01.T01:CDS 45.0%
!! GGTTTTGGTATCTTAGGTGG+TGG + Chr1:27155030-27155049 MsG0180001797.01.T01:CDS 45.0%
!! GTAACTGGTGTTGCACTTGT+TGG + Chr1:27154730-27154749 MsG0180001797.01.T01:CDS 45.0%
!! GTGGTTTGTTCTGTTGCTTC+AGG + Chr1:27154838-27154857 MsG0180001797.01.T01:CDS 45.0%
!! GTTCCTGGTCTTGTTGGATT+TGG - Chr1:27154685-27154704 None:intergenic 45.0%
!!! TGGCTTGGTTTTGGAATTGG+TGG + Chr1:27154919-27154938 MsG0180001797.01.T01:CDS 45.0%
AACAAGAGCCGTGTAACGAG+CGG - Chr1:27155235-27155254 None:intergenic 50.0%
AAGCAATTCGCAGCACGACA+TGG + Chr1:27155378-27155397 MsG0180001797.01.T01:CDS 50.0%
AATCTCAGCTGCTGCAGGAA+AGG + Chr1:27155845-27155864 MsG0180001797.01.T01:CDS 50.0%
AGCTGCAGCGGATATGTCTA+AGG + Chr1:27155272-27155291 MsG0180001797.01.T01:CDS 50.0%
AGTGGAGAGAACGAAGGAGA+AGG + Chr1:27156059-27156078 MsG0180001797.01.T01:CDS 50.0%
ATTCGCAGCACGACATGGTT+TGG + Chr1:27155383-27155402 MsG0180001797.01.T01:CDS 50.0%
CAGTAGTACGTCAATGCAGC+TGG - Chr1:27155192-27155211 None:intergenic 50.0%
GAGTTGAGTGGAGAGAACGA+AGG + Chr1:27156053-27156072 MsG0180001797.01.T01:CDS 50.0%
GCGTTATGCAGTACTGTTCC+GGG + Chr1:27155570-27155589 MsG0180001797.01.T01:CDS 50.0%
GGAAAGGCAGGTGCAATTGT+TGG + Chr1:27155861-27155880 MsG0180001797.01.T01:CDS 50.0%
GGCACTAACAATGATGCTGC+TGG - Chr1:27155123-27155142 None:intergenic 50.0%
! CAGCTGCATTGACGTACTAC+TGG + Chr1:27155190-27155209 MsG0180001797.01.T01:CDS 50.0%
! GCACTTGTTGGAACACTAGC+AGG + Chr1:27154742-27154761 MsG0180001797.01.T01:CDS 50.0%
!! ACACTTGGTGGAAGTGTTCC+TGG - Chr1:27154700-27154719 None:intergenic 50.0%
!! GGAAGTGTTCCTGGTCTTGT+TGG - Chr1:27154691-27154710 None:intergenic 50.0%
!! GGTTGGCTTGGGGACAAAAT+GGG + Chr1:27154778-27154797 MsG0180001797.01.T01:CDS 50.0%
!! TGGTTGGCTTGGGGACAAAA+TGG + Chr1:27154777-27154796 MsG0180001797.01.T01:CDS 50.0%
!! TGTACCGGCGGAGATTTTTC+CGG + Chr1:27155797-27155816 MsG0180001797.01.T01:CDS 50.0%
!! TGTTCCGGGTTACTGGTTCA+CGG + Chr1:27155584-27155603 MsG0180001797.01.T01:CDS 50.0%
!!! GCTGCTGTTTTTGCCATGCA+AGG + Chr1:27155009-27155028 MsG0180001797.01.T01:CDS 50.0%
CATGGAATCTCAGCTGCTGC+AGG + Chr1:27155840-27155859 MsG0180001797.01.T01:CDS 55.0%
CTAGCCGGAAAAATCTCCGC+CGG - Chr1:27155804-27155823 None:intergenic 55.0%
GAACGCGAAACAAGCTGCAG+CGG + Chr1:27155260-27155279 MsG0180001797.01.T01:CDS 55.0%
GCAGTACTGTTCCGGGTTAC+TGG + Chr1:27155577-27155596 MsG0180001797.01.T01:CDS 55.0%
GCCAGAAACCGCTCGTTACA+CGG + Chr1:27155224-27155243 MsG0180001797.01.T01:CDS 55.0%
GCTACCGTGAACCAGTAACC+CGG - Chr1:27155591-27155610 None:intergenic 55.0%
TCCTTCTTGCTCAGTGGCCT+CGG - Chr1:27156087-27156106 None:intergenic 55.0%
TGCAATCGGATGGATCCCTC+CGG + Chr1:27155488-27155507 MsG0180001797.01.T01:CDS 55.0%
CCACTGAGCAAGAAGGACCG+CGG + Chr1:27156090-27156109 MsG0180001797.01.T01:CDS 60.0%
GCCGTGTAACGAGCGGTTTC+TGG - Chr1:27155228-27155247 None:intergenic 60.0%
TCAGCTGCTGCAGGAAAGGC+AGG + Chr1:27155849-27155868 MsG0180001797.01.T01:CDS 60.0%
! CGGCGGAGATTTTTCCGGCT+AGG + Chr1:27155802-27155821 MsG0180001797.01.T01:CDS 60.0%
!! GAACGAAGGAGAAGGTGCCG+AGG + Chr1:27156067-27156086 MsG0180001797.01.T01:CDS 60.0%
CCGCGGTCCTTCTTGCTCAG+TGG - Chr1:27156093-27156112 None:intergenic 65.0%
GCCGAGGCCACTGAGCAAGA+AGG + Chr1:27156083-27156102 MsG0180001797.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 27154517 27156130 27154517 ID=MsG0180001797.01;Name=MsG0180001797.01
Chr1 mRNA 27154517 27156130 27154517 ID=MsG0180001797.01.T01;Parent=MsG0180001797.01;Name=MsG0180001797.01.T01;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|537
Chr1 exon 27154517 27156130 27154517 ID=MsG0180001797.01.T01:exon:34933;Parent=MsG0180001797.01.T01
Chr1 CDS 27154517 27156130 27154517 ID=MsG0180001797.01.T01:cds;Parent=MsG0180001797.01.T01
Gene Sequence

>MsG0180001797.01.T01

ATGTCTGGAGAATTAGGAGTGCTAAATGCACTTGATGTGGCAAAGACACAATTGTATCATTTCACTACAATTGTGATAGCTGGAATGGGTTTCTTCACTGATGCTTATGATCTTTTCTGCATTTCCCTTGTCACAAAGTTGTTAGGGAGAATATATTACACAGAACCAAATCCAACAAGACCAGGAACACTTCCACCAAGTGTTCAATCAGCTGTAACTGGTGTTGCACTTGTTGGAACACTAGCAGGCCAATTATTCTTTGGTTGGCTTGGGGACAAAATGGGAAGAAAAAAAGTATATGGTTTAACTCTTATTCTCATGGTGGTTTGTTCTGTTGCTTCAGGACTCTCTTTTGGATCAAGTCCAAAGAGTGTTATGGCAACACTTTGTTTCTTTAGGTTTTGGCTTGGTTTTGGAATTGGTGGTGATTACCCTCTTTCAGCTACAATCATGTCTGAATATGCTAACAAAAAAACTAGAGGTGCATTTATTGCTGCTGTTTTTGCCATGCAAGGTTTTGGTATCTTAGGTGGTGGAATTGTTGCTTTGATTGTGGCTTCTATATTTGATCACAAATATAAGATTCCCACCTTTGAAGAAAATCCAGCAGCATCATTGTTAGTGCCTCAATTTGATTATGTTTGGAGACTTATTCTTATGTTCGGCGCTCTTCCAGCTGCATTGACGTACTACTGGCGTATGAAAATGCCAGAAACCGCTCGTTACACGGCTCTTGTTGCTAAGAACGCGAAACAAGCTGCAGCGGATATGTCTAAGGTATTGCAAGTTGAACTTGAAGTTGAAGAGGAGAAGGTACAAAAAATGACTAGTGATAAAAGGAATAGTTATGGCTTGTTCAGCAAGCAATTCGCAGCACGACATGGTTTGGCTTTGTTTGGAACATGTAGTACTTGGTTTTTGTTGGATATTGCTTTCTATAGTCAGAATCTTTTCCAAAAGGACATTTTTAGTGCAATCGGATGGATCCCTCCGGCAAAAGAAATGAATGCAATTCATGAGGTTTACAAGATTGCAAGAGCACAAACACTTATTGCGTTATGCAGTACTGTTCCGGGTTACTGGTTCACGGTAGCGTTTATCGATTACATGGGTCGTTTTGCTATTCAAATGATGGGATTCTTTTTCATGACTGTTTTCATGTTTGCTCTTGCCATACCATATGATCATTGGAGCAAGAAAGATAATAGAATTGGGTTTGTTGTAATGTATTCACTCACATTCTTCTTTGCTAATTTTGGTCCAAATGCTACAACATTTGTTGTACCGGCGGAGATTTTTCCGGCTAGGTTAAGGTCTACTTGTCATGGAATCTCAGCTGCTGCAGGAAAGGCAGGTGCAATTGTTGGTGCATTTGGATTCTTGTATGCTGCACAAAGTAAAGATCCTACCAAGACTGATAAAGGGTATCCAACCGGTATTGGGATTAAGAACTCTCTTATCATGCTTGGTGTAATCAACTTTGTTGGGATGTTATGCACTTTACTTGTTCCGGAATCAAAGGGAAAATCGTTGGAAGAGTTGAGTGGAGAGAACGAAGGAGAAGGTGCCGAGGCCACTGAGCAAGAAGGACCGCGGTTTGAAAATGTAGCTTGA

Protein sequence

>MsG0180001797.01.T01

MSGELGVLNALDVAKTQLYHFTTIVIAGMGFFTDAYDLFCISLVTKLLGRIYYTEPNPTRPGTLPPSVQSAVTGVALVGTLAGQLFFGWLGDKMGRKKVYGLTLILMVVCSVASGLSFGSSPKSVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILGGGIVALIVASIFDHKYKIPTFEENPAASLLVPQFDYVWRLILMFGALPAALTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEVEEEKVQKMTSDKRNSYGLFSKQFAARHGLALFGTCSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAKEMNAIHEVYKIARAQTLIALCSTVPGYWFTVAFIDYMGRFAIQMMGFFFMTVFMFALAIPYDHWSKKDNRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPTKTDKGYPTGIGIKNSLIMLGVINFVGMLCTLLVPESKGKSLEELSGENEGEGAEATEQEGPRFENVA*