AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040738.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040738.01.T01 MTR_7g096880 98.134 536 10 0 1 536 1 536 0.0 1086
MsG0780040738.01.T01 MTR_7g096870 91.011 534 46 1 1 532 1 534 0.0 988
MsG0780040738.01.T01 MTR_1g069935 86.293 518 69 1 1 516 1 518 0.0 940
MsG0780040738.01.T01 MTR_1g069930 74.721 538 132 2 1 535 1 537 0.0 848
MsG0780040738.01.T01 MTR_1g074930 76.262 535 119 3 5 533 4 536 0.0 844
MsG0780040738.01.T01 MTR_3g082700 75.881 539 124 2 1 533 1 539 0.0 828
MsG0780040738.01.T01 MTR_1g043220 75.376 532 125 2 5 530 4 535 0.0 820
MsG0780040738.01.T01 MTR_1g043290 75.614 529 123 2 5 527 4 532 0.0 818
MsG0780040738.01.T01 MTR_1g074940 77.237 514 95 4 1 506 1 500 0.0 816
MsG0780040738.01.T01 MTR_1g043200 75.568 528 123 2 5 526 4 531 0.0 815
MsG0780040738.01.T01 MTR_1g028600 60.971 515 187 3 6 517 3 506 0.0 635
MsG0780040738.01.T01 MTR_5g068140 58.608 546 196 4 8 532 7 543 0.0 632
MsG0780040738.01.T01 MTR_4g083960 53.042 526 221 12 6 522 5 513 0.0 522
MsG0780040738.01.T01 MTR_3g084110 24.215 446 278 15 76 510 76 472 1.12e-16 83.2
MsG0780040738.01.T01 MTR_7g005910 24.301 465 266 18 87 525 92 496 2.91e-16 82.0
MsG0780040738.01.T01 MTR_1g116660 23.581 458 279 18 90 530 97 500 5.22e-15 78.2
MsG0780040738.01.T01 MTR_7g446340 22.658 459 303 13 75 524 99 514 6.71e-15 77.8
MsG0780040738.01.T01 MTR_6g007340 22.658 459 303 13 75 524 99 514 6.71e-15 77.8
MsG0780040738.01.T01 MTR_1g116650 21.995 441 267 16 90 517 140 516 6.93e-14 74.7
MsG0780040738.01.T01 MTR_6g088450 24.449 454 267 16 75 505 102 502 4.21e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040738.01.T01 AT3G54700 85.880 517 72 1 1 516 1 517 0.0 928
MsG0780040738.01.T01 AT3G54700 85.880 517 72 1 1 516 1 517 0.0 928
MsG0780040738.01.T01 AT2G38940 85.078 516 72 1 1 511 1 516 0.0 925
MsG0780040738.01.T01 AT2G32830 74.440 536 131 1 1 530 1 536 0.0 848
MsG0780040738.01.T01 AT5G43350 77.799 518 111 1 1 514 1 518 0.0 837
MsG0780040738.01.T01 AT5G43360 76.923 520 116 1 1 516 1 520 0.0 828
MsG0780040738.01.T01 AT5G43370 77.799 518 111 1 1 514 1 518 0.0 813
MsG0780040738.01.T01 AT5G43370 77.799 518 111 1 1 514 1 518 0.0 813
MsG0780040738.01.T01 AT5G43340 67.761 518 150 2 3 516 4 508 0.0 744
MsG0780040738.01.T01 AT1G76430 49.905 527 233 11 5 516 3 513 3.68e-176 507
MsG0780040738.01.T01 AT1G20860 50.377 530 239 10 6 526 3 517 1.55e-173 501
MsG0780040738.01.T01 AT1G20860 50.377 530 239 10 6 526 55 569 3.86e-173 502
MsG0780040738.01.T01 AT4G08878 70.168 238 71 0 31 268 13 250 4.50e-119 352
MsG0780040738.01.T01 AT4G08895 55.245 143 32 1 316 458 23 133 2.70e-46 159
MsG0780040738.01.T01 AT2G43330 23.077 468 271 19 90 530 93 498 8.56e-12 68.2

Find 148 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCAGGGGTTTGGAATTT+TGG 0.077597 7:+81809840 MsG0780040738.01.T01:CDS
CTTGGGTGTGGTTAACATTT+TGG 0.093159 7:+81810779 MsG0780040738.01.T01:CDS
ACCTTCTTCTTTGCAAATTT+CGG 0.147299 7:+81810552 MsG0780040738.01.T01:CDS
CCTTCTTCTTTGCAAATTTC+GGG 0.150570 7:+81810553 MsG0780040738.01.T01:CDS
ATTGGTTCTGGCCTTTCTTT+TGG 0.175541 7:+81809667 MsG0780040738.01.T01:CDS
GGGGCTATGTTTGGTGCATT+TGG 0.202447 7:+81810669 MsG0780040738.01.T01:CDS
AGAGTTGCCATGACAGATTT+TGG 0.232908 7:-81809697 None:intergenic
GCAGTGTAACGAGCAGTTTC+TGG 0.260006 7:-81810039 None:intergenic
CTCCAACTCTCCATTGGTTC+CGG 0.285347 7:-81810880 None:intergenic
GTCTTTGCCATGCAGGGGTT+TGG 0.289260 7:+81809832 MsG0780040738.01.T01:CDS
GGGCTATGTTTGGTGCATTT+GGG 0.305639 7:+81810670 MsG0780040738.01.T01:CDS
AACCTCTTCAAGTGCATTCA+TGG 0.307238 7:-81810316 None:intergenic
GCTTTCGTTGGTACACTTAC+AGG 0.308824 7:+81809559 MsG0780040738.01.T01:CDS
TGCATTTGGGTTCTTGTACT+TGG 0.328684 7:+81810683 MsG0780040738.01.T01:CDS
GGGAAGCTTGGGGCTATGTT+TGG 0.345482 7:+81810660 MsG0780040738.01.T01:CDS
GTAATCTGCTCCATTGGTTC+TGG 0.348336 7:+81809655 MsG0780040738.01.T01:CDS
TGCTGCAGTCTTTGCCATGC+AGG 0.350042 7:+81809825 MsG0780040738.01.T01:CDS
TGAGGCAAATGGAAAATCTT+TGG 0.360198 7:+81810827 MsG0780040738.01.T01:CDS
CATCCGCATCTGGGAAGCTT+GGG 0.365616 7:+81810649 MsG0780040738.01.T01:CDS
GCTCTATGTAGTACAGTTCC+AGG 0.365684 7:+81810369 MsG0780040738.01.T01:CDS
TGGTGGAGACTACCCGCTTT+CGG 0.368286 7:+81809753 MsG0780040738.01.T01:CDS
TTCCACAAGCAGACTACATT+TGG 0.370224 7:+81809953 MsG0780040738.01.T01:CDS
GAAGAATTCACTGCTTCTCT+TGG 0.374421 7:+81810761 MsG0780040738.01.T01:CDS
AATGGCAAAGGATCAAATTC+AGG 0.374971 7:+81809330 None:intergenic
ATGTATCAGCTGCTGTCAAC+GGG 0.375859 7:+81809533 MsG0780040738.01.T01:CDS
TTGCACTGAAGATATCCTTC+TGG 0.385824 7:-81810269 None:intergenic
TGGCTTGGGTTTGGTATTGG+TGG 0.390538 7:+81809736 MsG0780040738.01.T01:CDS
CATGGAATATCATCCGCATC+TGG 0.393884 7:+81810639 MsG0780040738.01.T01:CDS
ACAACAAAGGTGGTAGCATT+AGG 0.393956 7:-81810576 None:intergenic
AAGGTTTAAAATCCAATTGA+TGG 0.395559 7:+81810428 MsG0780040738.01.T01:CDS
AAGGATATCTTCAGTGCAAT+TGG 0.401424 7:+81810273 MsG0780040738.01.T01:CDS
TAAAGAAGAATCCCATCAAT+TGG 0.402453 7:-81810440 None:intergenic
CAGGCACCAAGAAAGTAAAA+AGG 0.403508 7:-81810806 None:intergenic
TGGCTGGCTTGGTGATAAGT+TGG 0.412115 7:+81809594 MsG0780040738.01.T01:CDS
GGCTGGCTTGGTGATAAGTT+GGG 0.421208 7:+81809595 MsG0780040738.01.T01:CDS
CATAGTTTCAGCTGCATTCA+AGG 0.430576 7:+81809882 MsG0780040738.01.T01:CDS
TTATGAGTCCAGTGATCATA+TGG 0.434933 7:-81810492 None:intergenic
GGCTGCAGCGGATATGTCTA+AGG 0.435369 7:+81810086 MsG0780040738.01.T01:CDS
TTGGATTGTGTCCAAAAGAA+AGG 0.438258 7:-81809678 None:intergenic
GCAGGTTACCCTGCAGGTAT+TGG 0.440207 7:+81810735 MsG0780040738.01.T01:CDS
CGGCTGCAATGACTTACTAT+TGG 0.441204 7:+81810004 MsG0780040738.01.T01:CDS
GTAGTACAGTTCCAGGCTAC+TGG 0.442457 7:+81810376 MsG0780040738.01.T01:CDS
ACAATACCACGAAGCCGATT+CGG 0.443506 7:-81810521 None:intergenic
TTCACAGCAATCATCATAGC+TGG 0.444289 7:+81809394 MsG0780040738.01.T01:CDS
CGCATATACTACCATGTTGA+TGG 0.445018 7:+81809481 MsG0780040738.01.T01:CDS
AAGAATTCACTGCTTCTCTT+GGG 0.449285 7:+81810762 MsG0780040738.01.T01:CDS
TTCACTGCTTCTCTTGGGTG+TGG 0.449659 7:+81810767 MsG0780040738.01.T01:CDS
CATATCCGCTGCAGCCTGCT+TGG 0.454475 7:-81810079 None:intergenic
TACATTGGGTGGCAATGTAC+CGG 0.455366 7:-81809515 None:intergenic
TGTGGAACAGTTGAACCAAC+AGG 0.457025 7:-81809937 None:intergenic
GAAGAAGAAGCCGGAACCAA+TGG 0.458999 7:+81810870 MsG0780040738.01.T01:CDS
GCTGCAGTCTTTGCCATGCA+GGG 0.460059 7:+81809826 MsG0780040738.01.T01:CDS
CGACATGGATTACATCTACT+TGG 0.462628 7:+81810192 MsG0780040738.01.T01:CDS
TCATCCGCATCTGGGAAGCT+TGG 0.473815 7:+81810648 MsG0780040738.01.T01:CDS
GTCAACGGGGTTGCTTTCGT+TGG 0.476531 7:+81809547 MsG0780040738.01.T01:CDS
GTGGCTCTCATTGACAAGAT+AGG 0.481482 7:+81810405 MsG0780040738.01.T01:CDS
GGCAAAGACTGCAGCAATGA+AGG 0.485618 7:-81809818 None:intergenic
GTTGACAGCAGCTGATACAT+TGG 0.487108 7:-81809530 None:intergenic
ATATGATCACTGGACTCATA+AGG 0.489144 7:+81810494 MsG0780040738.01.T01:CDS
CTTGTACTTGGCACAGAACA+AGG 0.492231 7:+81810695 MsG0780040738.01.T01:CDS
TACTTGGTACAACAAGTACT+TGG 0.493210 7:+81810208 MsG0780040738.01.T01:CDS
TGGTATGACACTGATGATAA+TGG 0.493897 7:+81809633 MsG0780040738.01.T01:CDS
CAATAGTAAGTCATTGCAGC+CGG 0.496792 7:-81810003 None:intergenic
GGATCACCGAATCGGCTTCG+TGG 0.502695 7:+81810515 MsG0780040738.01.T01:CDS
TGAACCACAGCAAGCGGAGA+AGG 0.503812 7:+81810131 MsG0780040738.01.T01:CDS
TGCGGATGATATTCCATGGC+AGG 0.504397 7:-81810634 None:intergenic
TTCTTGGTGCCTGAGGCAAA+TGG 0.508113 7:+81810816 MsG0780040738.01.T01:CDS
TTCTTCACACCAATACCTGC+AGG 0.508992 7:-81810744 None:intergenic
AAATCTTTGGAGGAGATGTC+AGG 0.510193 7:+81810840 MsG0780040738.01.T01:CDS
AGTGCATTCATGGTTTGTGC+AGG 0.510860 7:-81810306 None:intergenic
CACAAGCAGACTACATTTGG+AGG 0.510888 7:+81809956 MsG0780040738.01.T01:CDS
GCGGAGAAGGCAAAATCATA+TGG 0.514417 7:+81810144 MsG0780040738.01.T01:CDS
ATATCTTCAGTGCAATTGGT+TGG 0.515374 7:+81810277 MsG0780040738.01.T01:CDS
TTGGGTAGGAAGAAAGTGTA+TGG 0.515516 7:+81809613 MsG0780040738.01.T01:CDS
AACCATGAATGCACTTGAAG+AGG 0.516262 7:+81810314 MsG0780040738.01.T01:CDS
AGATTGCTCCAACTCTCCAT+TGG 0.516518 7:-81810886 None:intergenic
TTGCCATTCCATATGATCAC+TGG 0.516816 7:+81810484 MsG0780040738.01.T01:CDS
TCCCTTGTTACCAAGTTGCT+CGG 0.520352 7:+81809457 MsG0780040738.01.T01:CDS
AGGTTTAAAATCCAATTGAT+GGG 0.523949 7:+81810429 MsG0780040738.01.T01:CDS
CAGGTAGAACGGAATCTAGC+AGG 0.525861 7:-81810615 None:intergenic
GACAAGAGTAAAGCAGATGC+AGG 0.526182 7:+81810717 MsG0780040738.01.T01:CDS
CTCCAAATGTAGTCTGCTTG+TGG 0.526433 7:-81809955 None:intergenic
AAAAGAAAGGCCAGAACCAA+TGG 0.531221 7:-81809665 None:intergenic
ATAATGGTAATCTGCTCCAT+TGG 0.531504 7:+81809649 MsG0780040738.01.T01:CDS
GCCACTGTAAACCAGTAGCC+TGG 0.533275 7:-81810387 None:intergenic
GCAGATGCAGGTTACCCTGC+AGG 0.533852 7:+81810729 MsG0780040738.01.T01:CDS
GTTGATGGTGCTGCGAAGCC+CGG 0.534866 7:+81809496 MsG0780040738.01.T01:CDS
ATCATATGGCTTGTTGTCAA+AGG 0.535067 7:+81810158 MsG0780040738.01.T01:CDS
TGTGATGGTAGGAGCACTCC+CGG 0.536043 7:+81809984 MsG0780040738.01.T01:CDS
GGACACCAAGCAGGCTGCAG+CGG 0.537285 7:+81810074 MsG0780040738.01.T01:CDS
TTGACAGCAGCTGATACATT+GGG 0.537719 7:-81809529 None:intergenic
GGATATGTCTAAGGTTCTGC+AGG 0.537946 7:+81810095 MsG0780040738.01.T01:CDS
CTGCAGTCTTTGCCATGCAG+GGG 0.540874 7:+81809827 MsG0780040738.01.T01:CDS
CTTTCGTTGGTACACTTACA+GGG 0.541506 7:+81809560 MsG0780040738.01.T01:CDS
ACATTATAGTAGCCGAAAGC+GGG 0.542524 7:-81809765 None:intergenic
ACTCATAAGGATCACCGAAT+CGG 0.544423 7:+81810507 MsG0780040738.01.T01:CDS
AGATTCCGTTCTACCTGCCA+TGG 0.544647 7:+81810621 MsG0780040738.01.T01:CDS
CTGCAATGACTTACTATTGG+CGG 0.544763 7:+81810007 MsG0780040738.01.T01:CDS
AATTAAACTCAATCTAAACA+TGG 0.547537 7:-81810932 None:intergenic
ACATTGGGTGGCAATGTACC+GGG 0.549146 7:-81809514 None:intergenic
AGCCGGAACCAATGGAGAGT+TGG 0.550591 7:+81810878 MsG0780040738.01.T01:CDS
GCATTCATGGTTTGTGCAGG+TGG 0.550880 7:-81810303 None:intergenic
AGTTGCTAAGGACACCAAGC+AGG 0.552452 7:+81810065 MsG0780040738.01.T01:CDS
GTCCGAGCAACTTGGTAACA+AGG 0.554046 7:-81809459 None:intergenic
AATGTATCAGCTGCTGTCAA+CGG 0.554506 7:+81809532 MsG0780040738.01.T01:CDS
CCCGAAATTTGCAAAGAAGA+AGG 0.555344 7:-81810553 None:intergenic
ATATTCCATGGCAGGTAGAA+CGG 0.558469 7:-81810626 None:intergenic
CGAAGCTGAACCACAGCAAG+CGG 0.561404 7:+81810125 MsG0780040738.01.T01:CDS
TGGAGGATAATTGTGATGGT+AGG 0.563401 7:+81809973 MsG0780040738.01.T01:CDS
GGCAAATGGAAAATCTTTGG+AGG 0.563885 7:+81810830 MsG0780040738.01.T01:CDS
AGCAATCATCATAGCTGGGA+TGG 0.564203 7:+81809399 MsG0780040738.01.T01:CDS
TTGATGTGGCGAAAACTCAA+TGG 0.574788 7:+81809365 MsG0780040738.01.T01:CDS
AGCCCCAAGCTTCCCAGATG+CGG 0.578715 7:-81810652 None:intergenic
AATAGTAAGTCATTGCAGCC+GGG 0.578730 7:-81810002 None:intergenic
ATGGAATATCATCCGCATCT+GGG 0.579157 7:+81810640 MsG0780040738.01.T01:CDS
TTACACTGCTCTAGTTGCTA+AGG 0.580370 7:+81810053 MsG0780040738.01.T01:CDS
GGTGAAAACGAAGAAGAAGC+CGG 0.582672 7:+81810861 MsG0780040738.01.T01:CDS
CAGTCAAAATCTATTCCAGA+AGG 0.585368 7:+81810254 MsG0780040738.01.T01:CDS
CTCTCATTGACAAGATAGGA+AGG 0.588657 7:+81810409 MsG0780040738.01.T01:CDS
TTTGCCTTCTCCGCTTGCTG+TGG 0.589290 7:-81810135 None:intergenic
AATTTCTGCTGGCACAACAA+AGG 0.595387 7:-81810589 None:intergenic
GACATTATAGTAGCCGAAAG+CGG 0.598882 7:-81809766 None:intergenic
CAAAATTCCAAACCCCTGCA+TGG 0.608713 7:-81809839 None:intergenic
GCAATCATCATAGCTGGGAT+GGG 0.611817 7:+81809400 MsG0780040738.01.T01:CDS
CATTTGGAGGATAATTGTGA+TGG 0.611828 7:+81809969 MsG0780040738.01.T01:CDS
ACACAATCCAAAATCTGTCA+TGG 0.612120 7:+81809690 MsG0780040738.01.T01:CDS
CAGATGCGGATGATATTCCA+TGG 0.613085 7:-81810638 None:intergenic
TCACAGCAATCATCATAGCT+GGG 0.613106 7:+81809395 MsG0780040738.01.T01:CDS
ATTAAACTCAATCTAAACAT+GGG 0.614155 7:-81810931 None:intergenic
AGTCCAGTGATCATATGGAA+TGG 0.614289 7:-81810487 None:intergenic
ATCCGCATCTGGGAAGCTTG+GGG 0.619152 7:+81810650 MsG0780040738.01.T01:CDS
AGATTGAAAAGTAATGGCAA+AGG 0.619832 7:+81809318 None:intergenic
GTATATGCGTCCGAGCAACT+TGG 0.620992 7:-81809467 None:intergenic
AAGGAGTTCATGAGTCGACA+TGG 0.626280 7:+81810177 MsG0780040738.01.T01:CDS
TCGTACGCAGTTGACCCTGT+TGG 0.626608 7:+81809922 MsG0780040738.01.T01:CDS
TTCTGCTGGCACAACAAAGG+TGG 0.627572 7:-81810586 None:intergenic
TCCAGGCTACTGGTTTACAG+TGG 0.634566 7:+81810386 MsG0780040738.01.T01:CDS
TCCGAGCAACTTGGTAACAA+GGG 0.641166 7:-81809458 None:intergenic
GGCTTGGTGATAAGTTGGGT+AGG 0.643521 7:+81809599 MsG0780040738.01.T01:CDS
GCTTCGCAGCACCATCAACA+TGG 0.643769 7:-81809492 None:intergenic
ACAGCAGCTGATACATTGGG+TGG 0.646579 7:-81809526 None:intergenic
GTACGATGGTGAATCAAACA+TGG 0.664206 7:-81809905 None:intergenic
TATTCTAATAAGAAGACTCG+TGG 0.670227 7:+81809793 MsG0780040738.01.T01:CDS
GGTGCTAAATGCACTTGATG+TGG 0.678447 7:+81809351 MsG0780040738.01.T01:CDS
GTGGAACAGTTGAACCAACA+GGG 0.679599 7:-81809936 None:intergenic
ACAGGGTCAACTGCGTACGA+TGG 0.693098 7:-81809919 None:intergenic
TCTTCACACCAATACCTGCA+GGG 0.695753 7:-81810743 None:intergenic
TGTATCAGCTGCTGTCAACG+GGG 0.711594 7:+81809534 MsG0780040738.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGTTTAAAATCCAATTGA+TGG + Chr7:81810428-81810447 MsG0780040738.01.T01:CDS 25.0%
!! AGGTTTAAAATCCAATTGAT+GGG + Chr7:81810429-81810448 MsG0780040738.01.T01:CDS 25.0%
ACCTTCTTCTTTGCAAATTT+CGG + Chr7:81810552-81810571 MsG0780040738.01.T01:CDS 30.0%
TAAAGAAGAATCCCATCAAT+TGG - Chr7:81810443-81810462 None:intergenic 30.0%
TATTCTAATAAGAAGACTCG+TGG + Chr7:81809793-81809812 MsG0780040738.01.T01:CDS 30.0%
AAGAATTCACTGCTTCTCTT+GGG + Chr7:81810762-81810781 MsG0780040738.01.T01:CDS 35.0%
AAGGATATCTTCAGTGCAAT+TGG + Chr7:81810273-81810292 MsG0780040738.01.T01:CDS 35.0%
ACACAATCCAAAATCTGTCA+TGG + Chr7:81809690-81809709 MsG0780040738.01.T01:CDS 35.0%
ATAATGGTAATCTGCTCCAT+TGG + Chr7:81809649-81809668 MsG0780040738.01.T01:CDS 35.0%
ATATCTTCAGTGCAATTGGT+TGG + Chr7:81810277-81810296 MsG0780040738.01.T01:CDS 35.0%
ATATGATCACTGGACTCATA+AGG + Chr7:81810494-81810513 MsG0780040738.01.T01:CDS 35.0%
CAGTCAAAATCTATTCCAGA+AGG + Chr7:81810254-81810273 MsG0780040738.01.T01:CDS 35.0%
CATTTGGAGGATAATTGTGA+TGG + Chr7:81809969-81809988 MsG0780040738.01.T01:CDS 35.0%
CCTTCTTCTTTGCAAATTTC+GGG + Chr7:81810553-81810572 MsG0780040738.01.T01:CDS 35.0%
TACTTGGTACAACAAGTACT+TGG + Chr7:81810208-81810227 MsG0780040738.01.T01:CDS 35.0%
TGAGGCAAATGGAAAATCTT+TGG + Chr7:81810827-81810846 MsG0780040738.01.T01:CDS 35.0%
TGGTATGACACTGATGATAA+TGG + Chr7:81809633-81809652 MsG0780040738.01.T01:CDS 35.0%
TTATGAGTCCAGTGATCATA+TGG - Chr7:81810495-81810514 None:intergenic 35.0%
TTGGATTGTGTCCAAAAGAA+AGG - Chr7:81809681-81809700 None:intergenic 35.0%
! AAAGATTTTCCATTTGCCTC+AGG - Chr7:81810828-81810847 None:intergenic 35.0%
! GGGATTCCTTTTTACTTTCT+TGG + Chr7:81810800-81810819 MsG0780040738.01.T01:CDS 35.0%
! TTGGGTGTGGTTAACATTTT+GGG + Chr7:81810780-81810799 MsG0780040738.01.T01:CDS 35.0%
!! ATCATATGGCTTGTTGTCAA+AGG + Chr7:81810158-81810177 MsG0780040738.01.T01:CDS 35.0%
AAAAGAAAGGCCAGAACCAA+TGG - Chr7:81809668-81809687 None:intergenic 40.0%
AACCATGAATGCACTTGAAG+AGG + Chr7:81810314-81810333 MsG0780040738.01.T01:CDS 40.0%
AACCTCTTCAAGTGCATTCA+TGG - Chr7:81810319-81810338 None:intergenic 40.0%
AATAGTAAGTCATTGCAGCC+GGG - Chr7:81810005-81810024 None:intergenic 40.0%
AATGTATCAGCTGCTGTCAA+CGG + Chr7:81809532-81809551 MsG0780040738.01.T01:CDS 40.0%
AATTTCTGCTGGCACAACAA+AGG - Chr7:81810592-81810611 None:intergenic 40.0%
ACAACAAAGGTGGTAGCATT+AGG - Chr7:81810579-81810598 None:intergenic 40.0%
ACATTATAGTAGCCGAAAGC+GGG - Chr7:81809768-81809787 None:intergenic 40.0%
ACTCATAAGGATCACCGAAT+CGG + Chr7:81810507-81810526 MsG0780040738.01.T01:CDS 40.0%
AGTCCAGTGATCATATGGAA+TGG - Chr7:81810490-81810509 None:intergenic 40.0%
ATATTCCATGGCAGGTAGAA+CGG - Chr7:81810629-81810648 None:intergenic 40.0%
ATGGAATATCATCCGCATCT+GGG + Chr7:81810640-81810659 MsG0780040738.01.T01:CDS 40.0%
CAATAGTAAGTCATTGCAGC+CGG - Chr7:81810006-81810025 None:intergenic 40.0%
CAGGCACCAAGAAAGTAAAA+AGG - Chr7:81810809-81810828 None:intergenic 40.0%
CATAGTTTCAGCTGCATTCA+AGG + Chr7:81809882-81809901 MsG0780040738.01.T01:CDS 40.0%
CCCGAAATTTGCAAAGAAGA+AGG - Chr7:81810556-81810575 None:intergenic 40.0%
CGCATATACTACCATGTTGA+TGG + Chr7:81809481-81809500 MsG0780040738.01.T01:CDS 40.0%
CTAGCAGGAAAAATTTCTGC+TGG - Chr7:81810603-81810622 None:intergenic 40.0%
CTCTCATTGACAAGATAGGA+AGG + Chr7:81810409-81810428 MsG0780040738.01.T01:CDS 40.0%
CTGCAATGACTTACTATTGG+CGG + Chr7:81810007-81810026 MsG0780040738.01.T01:CDS 40.0%
CTTTCGTTGGTACACTTACA+GGG + Chr7:81809560-81809579 MsG0780040738.01.T01:CDS 40.0%
GAAGAATTCACTGCTTCTCT+TGG + Chr7:81810761-81810780 MsG0780040738.01.T01:CDS 40.0%
GACATTATAGTAGCCGAAAG+CGG - Chr7:81809769-81809788 None:intergenic 40.0%
GGCAAATGGAAAATCTTTGG+AGG + Chr7:81810830-81810849 MsG0780040738.01.T01:CDS 40.0%
GTACGATGGTGAATCAAACA+TGG - Chr7:81809908-81809927 None:intergenic 40.0%
TACCAAACCCAAGCCAAAAA+CGG - Chr7:81809732-81809751 None:intergenic 40.0%
TCACAGCAATCATCATAGCT+GGG + Chr7:81809395-81809414 MsG0780040738.01.T01:CDS 40.0%
TGGAGGATAATTGTGATGGT+AGG + Chr7:81809973-81809992 MsG0780040738.01.T01:CDS 40.0%
TTACACTGCTCTAGTTGCTA+AGG + Chr7:81810053-81810072 MsG0780040738.01.T01:CDS 40.0%
TTCACAGCAATCATCATAGC+TGG + Chr7:81809394-81809413 MsG0780040738.01.T01:CDS 40.0%
TTCCACAAGCAGACTACATT+TGG + Chr7:81809953-81809972 MsG0780040738.01.T01:CDS 40.0%
TTGACAGCAGCTGATACATT+GGG - Chr7:81809532-81809551 None:intergenic 40.0%
TTGATGTGGCGAAAACTCAA+TGG + Chr7:81809365-81809384 MsG0780040738.01.T01:CDS 40.0%
TTGCACTGAAGATATCCTTC+TGG - Chr7:81810272-81810291 None:intergenic 40.0%
TTGCCATTCCATATGATCAC+TGG + Chr7:81810484-81810503 MsG0780040738.01.T01:CDS 40.0%
! AAATCTTTGGAGGAGATGTC+AGG + Chr7:81810840-81810859 MsG0780040738.01.T01:CDS 40.0%
! AGAGTTGCCATGACAGATTT+TGG - Chr7:81809700-81809719 None:intergenic 40.0%
! CGACATGGATTACATCTACT+TGG + Chr7:81810192-81810211 MsG0780040738.01.T01:CDS 40.0%
! CTCTTTGCTTCTTCCGTTTT+TGG + Chr7:81809716-81809735 MsG0780040738.01.T01:CDS 40.0%
! CTTGGGTGTGGTTAACATTT+TGG + Chr7:81810779-81810798 MsG0780040738.01.T01:CDS 40.0%
! TGCATTTGGGTTCTTGTACT+TGG + Chr7:81810683-81810702 MsG0780040738.01.T01:CDS 40.0%
! TTGGGTAGGAAGAAAGTGTA+TGG + Chr7:81809613-81809632 MsG0780040738.01.T01:CDS 40.0%
!! ATGCAGGGGTTTGGAATTTT+GGG + Chr7:81809841-81809860 MsG0780040738.01.T01:CDS 40.0%
!!! ATTGGTTCTGGCCTTTCTTT+TGG + Chr7:81809667-81809686 MsG0780040738.01.T01:CDS 40.0%
!!! TTTTACTTTCTTGGTGCCTG+AGG + Chr7:81810809-81810828 MsG0780040738.01.T01:CDS 40.0%
!!! TTTTGGCTTGGGTTTGGTAT+TGG + Chr7:81809733-81809752 MsG0780040738.01.T01:CDS 40.0%
AAGGAGTTCATGAGTCGACA+TGG + Chr7:81810177-81810196 MsG0780040738.01.T01:CDS 45.0%
ACAATACCACGAAGCCGATT+CGG - Chr7:81810524-81810543 None:intergenic 45.0%
AGATTGCTCCAACTCTCCAT+TGG - Chr7:81810889-81810908 None:intergenic 45.0%
AGCAATCATCATAGCTGGGA+TGG + Chr7:81809399-81809418 MsG0780040738.01.T01:CDS 45.0%
ATGTATCAGCTGCTGTCAAC+GGG + Chr7:81809533-81809552 MsG0780040738.01.T01:CDS 45.0%
CAAAATTCCAAACCCCTGCA+TGG - Chr7:81809842-81809861 None:intergenic 45.0%
CACAAGCAGACTACATTTGG+AGG + Chr7:81809956-81809975 MsG0780040738.01.T01:CDS 45.0%
CAGATGCGGATGATATTCCA+TGG - Chr7:81810641-81810660 None:intergenic 45.0%
CATGGAATATCATCCGCATC+TGG + Chr7:81810639-81810658 MsG0780040738.01.T01:CDS 45.0%
CGGCTGCAATGACTTACTAT+TGG + Chr7:81810004-81810023 MsG0780040738.01.T01:CDS 45.0%
CTCCAAATGTAGTCTGCTTG+TGG - Chr7:81809958-81809977 None:intergenic 45.0%
CTTGTACTTGGCACAGAACA+AGG + Chr7:81810695-81810714 MsG0780040738.01.T01:CDS 45.0%
GACAAGAGTAAAGCAGATGC+AGG + Chr7:81810717-81810736 MsG0780040738.01.T01:CDS 45.0%
GCAATCATCATAGCTGGGAT+GGG + Chr7:81809400-81809419 MsG0780040738.01.T01:CDS 45.0%
GCGGAGAAGGCAAAATCATA+TGG + Chr7:81810144-81810163 MsG0780040738.01.T01:CDS 45.0%
GCTCTATGTAGTACAGTTCC+AGG + Chr7:81810369-81810388 MsG0780040738.01.T01:CDS 45.0%
GCTTTCGTTGGTACACTTAC+AGG + Chr7:81809559-81809578 MsG0780040738.01.T01:CDS 45.0%
GGTGAAAACGAAGAAGAAGC+CGG + Chr7:81810861-81810880 MsG0780040738.01.T01:CDS 45.0%
GGTGCTAAATGCACTTGATG+TGG + Chr7:81809351-81809370 MsG0780040738.01.T01:CDS 45.0%
GTGGAACAGTTGAACCAACA+GGG - Chr7:81809939-81809958 None:intergenic 45.0%
GTGGCTCTCATTGACAAGAT+AGG + Chr7:81810405-81810424 MsG0780040738.01.T01:CDS 45.0%
GTTGACAGCAGCTGATACAT+TGG - Chr7:81809533-81809552 None:intergenic 45.0%
TACATTGGGTGGCAATGTAC+CGG - Chr7:81809518-81809537 None:intergenic 45.0%
TCCCTTGTTACCAAGTTGCT+CGG + Chr7:81809457-81809476 MsG0780040738.01.T01:CDS 45.0%
TCTTCACACCAATACCTGCA+GGG - Chr7:81810746-81810765 None:intergenic 45.0%
TGTGGAACAGTTGAACCAAC+AGG - Chr7:81809940-81809959 None:intergenic 45.0%
TTCTTCACACCAATACCTGC+AGG - Chr7:81810747-81810766 None:intergenic 45.0%
! AGTGCATTCATGGTTTGTGC+AGG - Chr7:81810309-81810328 None:intergenic 45.0%
! CTTACAGGGCAGCTTTTCTT+TGG + Chr7:81809574-81809593 MsG0780040738.01.T01:CDS 45.0%
! GGATATGTCTAAGGTTCTGC+AGG + Chr7:81810095-81810114 MsG0780040738.01.T01:CDS 45.0%
! TCCGAGCAACTTGGTAACAA+GGG - Chr7:81809461-81809480 None:intergenic 45.0%
!! CATGCAGGGGTTTGGAATTT+TGG + Chr7:81809840-81809859 MsG0780040738.01.T01:CDS 45.0%
!! GGGCTATGTTTGGTGCATTT+GGG + Chr7:81810670-81810689 MsG0780040738.01.T01:CDS 45.0%
!! GTAATCTGCTCCATTGGTTC+TGG + Chr7:81809655-81809674 MsG0780040738.01.T01:CDS 45.0%
!!! GCTTCTTCCGTTTTTGGCTT+GGG + Chr7:81809722-81809741 MsG0780040738.01.T01:CDS 45.0%
!!! TGCTTCTTCCGTTTTTGGCT+TGG + Chr7:81809721-81809740 MsG0780040738.01.T01:CDS 45.0%
!!! TTCCGTTTTTGGCTTGGGTT+TGG + Chr7:81809727-81809746 MsG0780040738.01.T01:CDS 45.0%
ACAGCAGCTGATACATTGGG+TGG - Chr7:81809529-81809548 None:intergenic 50.0%
ACATTGGGTGGCAATGTACC+GGG - Chr7:81809517-81809536 None:intergenic 50.0%
AGATTCCGTTCTACCTGCCA+TGG + Chr7:81810621-81810640 MsG0780040738.01.T01:CDS 50.0%
AGTTGCTAAGGACACCAAGC+AGG + Chr7:81810065-81810084 MsG0780040738.01.T01:CDS 50.0%
CAGGTAGAACGGAATCTAGC+AGG - Chr7:81810618-81810637 None:intergenic 50.0%
GAAGAAGAAGCCGGAACCAA+TGG + Chr7:81810870-81810889 MsG0780040738.01.T01:CDS 50.0%
GCAGTGTAACGAGCAGTTTC+TGG - Chr7:81810042-81810061 None:intergenic 50.0%
GGCAAAGACTGCAGCAATGA+AGG - Chr7:81809821-81809840 None:intergenic 50.0%
GTAGTACAGTTCCAGGCTAC+TGG + Chr7:81810376-81810395 MsG0780040738.01.T01:CDS 50.0%
GTATATGCGTCCGAGCAACT+TGG - Chr7:81809470-81809489 None:intergenic 50.0%
TGCGGATGATATTCCATGGC+AGG - Chr7:81810637-81810656 None:intergenic 50.0%
TGTATCAGCTGCTGTCAACG+GGG + Chr7:81809534-81809553 MsG0780040738.01.T01:CDS 50.0%
TTCACTGCTTCTCTTGGGTG+TGG + Chr7:81810767-81810786 MsG0780040738.01.T01:CDS 50.0%
TTCTGCTGGCACAACAAAGG+TGG - Chr7:81810589-81810608 None:intergenic 50.0%
! GCATTCATGGTTTGTGCAGG+TGG - Chr7:81810306-81810325 None:intergenic 50.0%
! GTCCGAGCAACTTGGTAACA+AGG - Chr7:81809462-81809481 None:intergenic 50.0%
! TGGCTTGGGTTTGGTATTGG+TGG + Chr7:81809736-81809755 MsG0780040738.01.T01:CDS 50.0%
!! CAGCTTTTCTTTGGCTGGCT+TGG + Chr7:81809583-81809602 MsG0780040738.01.T01:CDS 50.0%
!! CAGGGGTTTGGAATTTTGGG+AGG + Chr7:81809844-81809863 MsG0780040738.01.T01:CDS 50.0%
!! CTCCAACTCTCCATTGGTTC+CGG - Chr7:81810883-81810902 None:intergenic 50.0%
!! GGCTGGCTTGGTGATAAGTT+GGG + Chr7:81809595-81809614 MsG0780040738.01.T01:CDS 50.0%
!! GGCTTGGTGATAAGTTGGGT+AGG + Chr7:81809599-81809618 MsG0780040738.01.T01:CDS 50.0%
!! GGGGCTATGTTTGGTGCATT+TGG + Chr7:81810669-81810688 MsG0780040738.01.T01:CDS 50.0%
!! GGGTTTGGAATTTTGGGAGG+TGG + Chr7:81809847-81809866 MsG0780040738.01.T01:CDS 50.0%
!! TCCAGGCTACTGGTTTACAG+TGG + Chr7:81810386-81810405 MsG0780040738.01.T01:CDS 50.0%
!! TGGCTGGCTTGGTGATAAGT+TGG + Chr7:81809594-81809613 MsG0780040738.01.T01:CDS 50.0%
!! TTCTTGGTGCCTGAGGCAAA+TGG + Chr7:81810816-81810835 MsG0780040738.01.T01:CDS 50.0%
ACAGGGTCAACTGCGTACGA+TGG - Chr7:81809922-81809941 None:intergenic 55.0%
AGCCGGAACCAATGGAGAGT+TGG + Chr7:81810878-81810897 MsG0780040738.01.T01:CDS 55.0%
ATCCGCATCTGGGAAGCTTG+GGG + Chr7:81810650-81810669 MsG0780040738.01.T01:CDS 55.0%
CATCCGCATCTGGGAAGCTT+GGG + Chr7:81810649-81810668 MsG0780040738.01.T01:CDS 55.0%
CGAAGCTGAACCACAGCAAG+CGG + Chr7:81810125-81810144 MsG0780040738.01.T01:CDS 55.0%
CTGCAGTCTTTGCCATGCAG+GGG + Chr7:81809827-81809846 MsG0780040738.01.T01:CDS 55.0%
GCAGGTTACCCTGCAGGTAT+TGG + Chr7:81810735-81810754 MsG0780040738.01.T01:CDS 55.0%
GCCACTGTAAACCAGTAGCC+TGG - Chr7:81810390-81810409 None:intergenic 55.0%
GCTGCAGTCTTTGCCATGCA+GGG + Chr7:81809826-81809845 MsG0780040738.01.T01:CDS 55.0%
GCTTCGCAGCACCATCAACA+TGG - Chr7:81809495-81809514 None:intergenic 55.0%
GGCTGCAGCGGATATGTCTA+AGG + Chr7:81810086-81810105 MsG0780040738.01.T01:CDS 55.0%
GGGAAGCTTGGGGCTATGTT+TGG + Chr7:81810660-81810679 MsG0780040738.01.T01:CDS 55.0%
GTCTTTGCCATGCAGGGGTT+TGG + Chr7:81809832-81809851 MsG0780040738.01.T01:CDS 55.0%
TCATCCGCATCTGGGAAGCT+TGG + Chr7:81810648-81810667 MsG0780040738.01.T01:CDS 55.0%
TCGTACGCAGTTGACCCTGT+TGG + Chr7:81809922-81809941 MsG0780040738.01.T01:CDS 55.0%
TGAACCACAGCAAGCGGAGA+AGG + Chr7:81810131-81810150 MsG0780040738.01.T01:CDS 55.0%
TGCTGCAGTCTTTGCCATGC+AGG + Chr7:81809825-81809844 MsG0780040738.01.T01:CDS 55.0%
TGGTGGAGACTACCCGCTTT+CGG + Chr7:81809753-81809772 MsG0780040738.01.T01:CDS 55.0%
! CAGGGCAGCTTTTCTTTGGC+TGG + Chr7:81809578-81809597 MsG0780040738.01.T01:CDS 55.0%
! GTCAACGGGGTTGCTTTCGT+TGG + Chr7:81809547-81809566 MsG0780040738.01.T01:CDS 55.0%
! TTTGCCTTCTCCGCTTGCTG+TGG - Chr7:81810138-81810157 None:intergenic 55.0%
!! TGTGATGGTAGGAGCACTCC+CGG + Chr7:81809984-81810003 MsG0780040738.01.T01:CDS 55.0%
AGCCCCAAGCTTCCCAGATG+CGG - Chr7:81810655-81810674 None:intergenic 60.0%
CATATCCGCTGCAGCCTGCT+TGG - Chr7:81810082-81810101 None:intergenic 60.0%
GCAGATGCAGGTTACCCTGC+AGG + Chr7:81810729-81810748 MsG0780040738.01.T01:CDS 60.0%
! GGATCACCGAATCGGCTTCG+TGG + Chr7:81810515-81810534 MsG0780040738.01.T01:CDS 60.0%
!! GTTGATGGTGCTGCGAAGCC+CGG + Chr7:81809496-81809515 MsG0780040738.01.T01:CDS 60.0%
GGACACCAAGCAGGCTGCAG+CGG + Chr7:81810074-81810093 MsG0780040738.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 81809331 81810941 81809331 ID=MsG0780040738.01;Name=MsG0780040738.01
Chr7 mRNA 81809331 81810941 81809331 ID=MsG0780040738.01.T01;Parent=MsG0780040738.01;Name=MsG0780040738.01.T01;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|536
Chr7 exon 81809331 81810941 81809331 ID=MsG0780040738.01.T01:exon:19028;Parent=MsG0780040738.01.T01
Chr7 CDS 81809331 81810941 81809331 ID=MsG0780040738.01.T01:cds;Parent=MsG0780040738.01.T01
Gene Sequence

>MsG0780040738.01.T01

ATGGCAAAGGATCAAATTCAGGTGCTAAATGCACTTGATGTGGCGAAAACTCAATGGTATCACTTCACAGCAATCATCATAGCTGGGATGGGCTTCTTTACTGATGCATATGATCTGTTCTGCATATCCCTTGTTACCAAGTTGCTCGGACGCATATACTACCATGTTGATGGTGCTGCGAAGCCCGGTACATTGCCACCCAATGTATCAGCTGCTGTCAACGGGGTTGCTTTCGTTGGTACACTTACAGGGCAGCTTTTCTTTGGCTGGCTTGGTGATAAGTTGGGTAGGAAGAAAGTGTATGGTATGACACTGATGATAATGGTAATCTGCTCCATTGGTTCTGGCCTTTCTTTTGGACACAATCCAAAATCTGTCATGGCAACTCTTTGCTTCTTCCGTTTTTGGCTTGGGTTTGGTATTGGTGGAGACTACCCGCTTTCGGCTACTATAATGTCAGAGTATTCTAATAAGAAGACTCGTGGTGCCTTCATTGCTGCAGTCTTTGCCATGCAGGGGTTTGGAATTTTGGGAGGTGGTATATTTGCAATCATAGTTTCAGCTGCATTCAAGGCCATGTTTGATTCACCATCGTACGCAGTTGACCCTGTTGGTTCAACTGTTCCACAAGCAGACTACATTTGGAGGATAATTGTGATGGTAGGAGCACTCCCGGCTGCAATGACTTACTATTGGCGGATGAAGATGCCAGAAACTGCTCGTTACACTGCTCTAGTTGCTAAGGACACCAAGCAGGCTGCAGCGGATATGTCTAAGGTTCTGCAGGTTGAAATCGAAGCTGAACCACAGCAAGCGGAGAAGGCAAAATCATATGGCTTGTTGTCAAAGGAGTTCATGAGTCGACATGGATTACATCTACTTGGTACAACAAGTACTTGGTTCTTGCTTGATATAGCATTTTACAGTCAAAATCTATTCCAGAAGGATATCTTCAGTGCAATTGGTTGGATACCACCTGCACAAACCATGAATGCACTTGAAGAGGTTTACAGAATCGCAAGAGCTCAAACACTTATTGCTCTATGTAGTACAGTTCCAGGCTACTGGTTTACAGTGGCTCTCATTGACAAGATAGGAAGGTTTAAAATCCAATTGATGGGATTCTTCTTTATGACTGTCTTCATGTTTGCTCTTGCCATTCCATATGATCACTGGACTCATAAGGATCACCGAATCGGCTTCGTGGTATTGTACTCATTGACCTTCTTCTTTGCAAATTTCGGGCCTAATGCTACCACCTTTGTTGTGCCAGCAGAAATTTTTCCTGCTAGATTCCGTTCTACCTGCCATGGAATATCATCCGCATCTGGGAAGCTTGGGGCTATGTTTGGTGCATTTGGGTTCTTGTACTTGGCACAGAACAAGGACAAGAGTAAAGCAGATGCAGGTTACCCTGCAGGTATTGGTGTGAAGAATTCACTGCTTCTCTTGGGTGTGGTTAACATTTTGGGATTCCTTTTTACTTTCTTGGTGCCTGAGGCAAATGGAAAATCTTTGGAGGAGATGTCAGGTGAAAACGAAGAAGAAGCCGGAACCAATGGAGAGTTGGAGCAATCTCATTCTCATAACAGAACTGTTTCCCATGTTTAG
Protein sequence

>MsG0780040738.01.T01

MAKDQIQVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAAKPGTLPPNVSAAVNGVAFVGTLTGQLFFGWLGDKLGRKKVYGMTLMIMVICSIGSGLSFGHNPKSVMATLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILGGGIFAIIVSAAFKAMFDSPSYAVDPVGSTVPQADYIWRIIVMVGALPAAMTYYWRMKMPETARYTALVAKDTKQAAADMSKVLQVEIEAEPQQAEKAKSYGLLSKEFMSRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQTMNALEEVYRIARAQTLIALCSTVPGYWFTVALIDKIGRFKIQLMGFFFMTVFMFALAIPYDHWTHKDHRIGFVVLYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAMFGAFGFLYLAQNKDKSKADAGYPAGIGVKNSLLLLGVVNILGFLFTFLVPEANGKSLEEMSGENEEEAGTNGELEQSHSHNRTVSHV*