AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041021.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041021.01.T01 MTR_7g102430 81.724 290 19 3 1 264 1433 1714 4.82e-144 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041021.01.T01 AT2G36810 51.916 287 100 4 1 261 1440 1714 1.69e-85 278
MsG0780041021.01.T01 AT2G36810 51.916 287 100 4 1 261 1209 1483 1.94e-85 278
MsG0780041021.01.T01 AT2G36810 51.916 287 100 4 1 261 1427 1701 2.37e-85 278

Find 64 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACTCTTGTTTCAGGTATT+TGG 0.133650 7:+85612086 MsG0780041021.01.T01:intron
TCCATTAGAATGATTCTTAT+TGG 0.159152 7:+85612561 MsG0780041021.01.T01:three_prime_UTR
CATAGCATTTGCCTGAATTA+TGG 0.178041 7:-85611850 None:intergenic
GGCAACATGTTCTGCTGCTC+TGG 0.253705 7:+85612154 MsG0780041021.01.T01:CDS
TTCCAGAGTTGATACTTATA+TGG 0.280519 7:+85611447 MsG0780041021.01.T01:CDS
TCAATGTTTGCGCCTCCACC+TGG 0.305245 7:+85612621 MsG0780041021.01.T01:three_prime_UTR
TATTGAAAGATTAAGCAAAA+TGG 0.320212 7:-85609186 None:intergenic
ACCAATAAGAATCATTCTAA+TGG 0.330122 7:-85612562 None:intergenic
ATAGCATTTGCCTGAATTAT+GGG 0.334013 7:-85611849 None:intergenic
TGCACCATGGCCCATAATTC+AGG 0.348868 7:+85611839 MsG0780041021.01.T01:CDS
AATCCTTCAATTTCCATCAA+TGG 0.351826 7:-85611232 None:intergenic
ACTCAACTCACTCGACAATA+AGG 0.362893 7:+85612237 MsG0780041021.01.T01:CDS
ATCCTTCAATTTCCATCAAT+GGG 0.374615 7:-85611231 None:intergenic
GGAAACTCGGTGTGTTTAGC+AGG 0.389068 7:-85611261 None:intergenic
TCATGCTGCTATTCCTCGTC+TGG 0.395508 7:+85611043 MsG0780041021.01.T01:CDS
TACTTCAGAATATGAATTGA+TGG 0.399454 7:-85608955 None:intergenic
TCGTTGCTAGTTTATTATCA+TGG 0.407083 7:-85612276 None:intergenic
GTTTCAGGTATTTGGTATGC+TGG 0.409327 7:+85612094 MsG0780041021.01.T01:intron
CAATGTTTGCGCCTCCACCT+GGG 0.416111 7:+85612622 MsG0780041021.01.T01:three_prime_UTR
CTAGCAACGACTCAACAATA+AGG 0.430252 7:+85612289 MsG0780041021.01.T01:exon
ATTGAAAGATTAAGCAAAAT+GGG 0.434292 7:-85609185 None:intergenic
GATCACCTGATGCCATTGTA+AGG 0.438595 7:+85612132 MsG0780041021.01.T01:CDS
TAGGTGATGTTCGAGTTTCA+TGG 0.439780 7:-85612505 None:intergenic
AGTCTTCCAACTCATGTTCG+TGG 0.462120 7:+85612189 MsG0780041021.01.T01:CDS
ATGGGCTCAACTGCATCATC+AGG 0.472631 7:-85609167 None:intergenic
GCAACATGTTCTGCTGCTCT+GGG 0.489536 7:+85612155 MsG0780041021.01.T01:CDS
TGCTCTCCACGAACATGAGT+TGG 0.493927 7:-85612195 None:intergenic
CAGAAGAAAATACCTGTGTA+TGG 0.496125 7:-85611929 None:intergenic
CGAGTTTCCTTTCTGATCAC+CGG 0.506306 7:+85611275 MsG0780041021.01.T01:CDS
GAAGTATACAGCTCAAGTCC+TGG 0.506679 7:+85608972 MsG0780041021.01.T01:CDS
CAGGTATTTGGTATGCTGGT+TGG 0.507301 7:+85612098 MsG0780041021.01.T01:intron
AATGTTTGCGCCTCCACCTG+GGG 0.509787 7:+85612623 MsG0780041021.01.T01:three_prime_UTR
GAATACTTTCTTGATGAGGC+AGG 0.514236 7:+85611809 MsG0780041021.01.T01:CDS
GTTGCCCTTACAATGGCATC+AGG 0.518908 7:-85612137 None:intergenic
TTCCCATTGATGGAAATTGA+AGG 0.526327 7:+85611229 MsG0780041021.01.T01:CDS
CAGCAGCATGCTCTCTCTAT+CGG 0.542539 7:+85611881 MsG0780041021.01.T01:CDS
CGCCATATAAGTATCAACTC+TGG 0.545506 7:-85611449 None:intergenic
TTAGTGTCCGACTAGCCTGC+CGG 0.548565 7:+85611090 MsG0780041021.01.T01:CDS
AGAAATTAATGAAATCTGCT+AGG 0.550108 7:-85612524 None:intergenic
TGATTACCCGGCAGGCTAGT+CGG 0.550774 7:-85611097 None:intergenic
AACCATACCGGTGATCAGAA+AGG 0.555360 7:-85611282 None:intergenic
AAGTATACAGCTCAAGTCCT+GGG 0.560388 7:+85608973 MsG0780041021.01.T01:CDS
TTATCATGGACTCCGTGTCA+TGG 0.560492 7:-85612262 None:intergenic
TAGTGTCCGACTAGCCTGCC+GGG 0.561255 7:+85611091 MsG0780041021.01.T01:CDS
AGCTGAATACTTTCTTGATG+AGG 0.566569 7:+85611805 MsG0780041021.01.T01:intron
GGAGAGCAGTTCATCTTGAT+CGG 0.566591 7:+85612210 MsG0780041021.01.T01:CDS
ACTTCAGAATATGAATTGAT+GGG 0.566792 7:-85608954 None:intergenic
TTATATGGCGTCAACAGTGC+AGG 0.569576 7:+85611462 MsG0780041021.01.T01:CDS
ATGATGACTGATTACCCGGC+AGG 0.573627 7:-85611105 None:intergenic
TTTGCCTGAATTATGGGCCA+TGG 0.587658 7:-85611843 None:intergenic
CGGTGATCAGAAAGGAAACT+CGG 0.595419 7:-85611274 None:intergenic
GTGATTTAGAAGTGGTCGAG+TGG 0.606967 7:+85612316 MsG0780041021.01.T01:three_prime_UTR
TGCAGTATCATGCTTACTGA+TGG 0.607894 7:+85609044 MsG0780041021.01.T01:CDS
GACAATAAGGAACCATGACA+CGG 0.619793 7:+85612250 MsG0780041021.01.T01:CDS
ATCACCTGATGCCATTGTAA+GGG 0.621915 7:+85612133 MsG0780041021.01.T01:CDS
TACATGACTTCAATGTGTGC+AGG 0.622579 7:-85612353 None:intergenic
AAGGAACCGTGATTTAGAAG+TGG 0.626946 7:+85612308 MsG0780041021.01.T01:three_prime_UTR
GAAACTCGGTGTGTTTAGCA+GGG 0.636081 7:-85611260 None:intergenic
AGAACATGTTGCCCTTACAA+TGG 0.641602 7:-85612144 None:intergenic
ACTCGACCACTTCTAAATCA+CGG 0.651181 7:-85612314 None:intergenic
TTTAGCTGACTACCATACAC+AGG 0.653395 7:+85611917 MsG0780041021.01.T01:CDS
ATGTTTGCGCCTCCACCTGG+GGG 0.671632 7:+85612624 MsG0780041021.01.T01:three_prime_UTR
TGAAGATGCAAAACCAGACG+AGG 0.674508 7:-85611056 None:intergenic
GCAGAGCTAAAATAACACCC+AGG 0.733647 7:-85608990 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATATTAATTTCAGTT+AGG - Chr7:85611591-85611610 None:intergenic 10.0%
!! GAAATTAATATTAAATCAAT+TGG + Chr7:85611595-85611614 MsG0780041021.01.T01:intron 10.0%
!! TTAAAAAAATATATTAAGCA+AGG - Chr7:85610605-85610624 None:intergenic 10.0%
!!! TAAATAATCTTTTCTTTTTT+GGG + Chr7:85610662-85610681 MsG0780041021.01.T01:intron 10.0%
!!! TTAAATAATCTTTTCTTTTT+TGG + Chr7:85610661-85610680 MsG0780041021.01.T01:intron 10.0%
!! AAAAAAAAGGAAAAAATACA+AGG - Chr7:85612407-85612426 None:intergenic 15.0%
!! AAAAAATGTTTGAAAAATGT+TGG - Chr7:85609458-85609477 None:intergenic 15.0%
!! AAAAATAATTAACATTGCAT+TGG - Chr7:85611752-85611771 None:intergenic 15.0%
!! AAATGTTAGATTTGATATAA+TGG + Chr7:85609538-85609557 MsG0780041021.01.T01:intron 15.0%
!! AATGTTAGATTTGATATAAT+GGG + Chr7:85609539-85609558 MsG0780041021.01.T01:intron 15.0%
!! TTATAGAAAAAATTCTAACA+TGG + Chr7:85611153-85611172 MsG0780041021.01.T01:intron 15.0%
!! TTTATTACTACTATAAGTTT+AGG + Chr7:85610380-85610399 MsG0780041021.01.T01:intron 15.0%
!!! TTTCAAACATTTTTTCATTA+AGG + Chr7:85609463-85609482 MsG0780041021.01.T01:intron 15.0%
!! AATAAAACCGTAATTAATTG+AGG - Chr7:85610366-85610385 None:intergenic 20.0%
!! ACTTCAAATTCAAATTCAAA+TGG - Chr7:85612053-85612072 None:intergenic 20.0%
!! ATCTAACATTTAATTCTAAC+AGG - Chr7:85609529-85609548 None:intergenic 20.0%
!! ATTGAAAGATTAAGCAAAAT+GGG - Chr7:85609188-85609207 None:intergenic 20.0%
!! ATTTAAAAGCTTAAGTTATG+AGG + Chr7:85610278-85610297 MsG0780041021.01.T01:intron 20.0%
!! CTAAAATCCAAATTATAAGA+AGG - Chr7:85609820-85609839 None:intergenic 20.0%
!! CTTCAAATTCAAATTCAAAT+GGG - Chr7:85612052-85612071 None:intergenic 20.0%
!! GAGCATTAGAATATAATTAA+TGG + Chr7:85610314-85610333 MsG0780041021.01.T01:intron 20.0%
!! TATTGAAAGATTAAGCAAAA+TGG - Chr7:85609189-85609208 None:intergenic 20.0%
!! TTTAAAAGCTTAAGTTATGA+GGG + Chr7:85610279-85610298 MsG0780041021.01.T01:intron 20.0%
!! TTTGATACCTTCTTATAATT+TGG + Chr7:85609810-85609829 MsG0780041021.01.T01:intron 20.0%
!!! GAAGATTTTGAAGAAAAAAA+AGG - Chr7:85612420-85612439 None:intergenic 20.0%
!!! TTATAATGATTGCTTTTCAA+AGG + Chr7:85611019-85611038 MsG0780041021.01.T01:intron 20.0%
!!! TTATTTTTAAGAATATCCTG+AGG + Chr7:85611336-85611355 MsG0780041021.01.T01:intron 20.0%
!!! TTTTGCTTAATCTTTCAATA+CGG + Chr7:85609189-85609208 MsG0780041021.01.T01:CDS 20.0%
! AAAAAGGAAAAAATACAAGG+AGG - Chr7:85612404-85612423 None:intergenic 25.0%
! ACCAATAAGAATCATTCTAA+TGG - Chr7:85612565-85612584 None:intergenic 25.0%
! ACTTCAGAATATGAATTGAT+GGG - Chr7:85608957-85608976 None:intergenic 25.0%
! AGAAATTAATGAAATCTGCT+AGG - Chr7:85612527-85612546 None:intergenic 25.0%
! ATGCTTCATAATATTCTCAA+TGG - Chr7:85611687-85611706 None:intergenic 25.0%
! ATTGAGAATATTATGAAGCA+TGG + Chr7:85611686-85611705 MsG0780041021.01.T01:intron 25.0%
! CTTGGTTAATACATTGAATA+AGG + Chr7:85610453-85610472 MsG0780041021.01.T01:intron 25.0%
! TAAAATCTTTCTAACCATAC+CGG - Chr7:85611297-85611316 None:intergenic 25.0%
! TACTTCAGAATATGAATTGA+TGG - Chr7:85608958-85608977 None:intergenic 25.0%
! TATACAGGTTAGAATTCATT+GGG + Chr7:85612005-85612024 MsG0780041021.01.T01:intron 25.0%
! TCCATTAGAATGATTCTTAT+TGG + Chr7:85612561-85612580 MsG0780041021.01.T01:three_prime_UTR 25.0%
! TGCTTCATAATATTCTCAAT+GGG - Chr7:85611686-85611705 None:intergenic 25.0%
! TTAAAAGCTTAAGTTATGAG+GGG + Chr7:85610280-85610299 MsG0780041021.01.T01:intron 25.0%
! TTCCATCTGTTTAAATCTAA+AGG + Chr7:85611770-85611789 MsG0780041021.01.T01:intron 25.0%
! TTCTATAAATCTCCAATTCA+AGG - Chr7:85611141-85611160 None:intergenic 25.0%
! TTTCAGTTAGGAAAATAATC+AGG - Chr7:85611579-85611598 None:intergenic 25.0%
!! CATTTTACTGTTGAATCAAT+AGG + Chr7:85609359-85609378 MsG0780041021.01.T01:intron 25.0%
!! GAAAAATGTTGGATTTTATC+TGG - Chr7:85609447-85609466 None:intergenic 25.0%
!! GGTTTTTCCTCAATTAATTA+CGG + Chr7:85610356-85610375 MsG0780041021.01.T01:intron 25.0%
!! TAATATTGCATCTGTCTTTT+TGG + Chr7:85611359-85611378 MsG0780041021.01.T01:intron 25.0%
!! TCAATAATTTTCCGTTTTGA+AGG + Chr7:85610570-85610589 MsG0780041021.01.T01:intron 25.0%
!!! AAAAAAGTGTTTATAAGTGG+TGG - Chr7:85609886-85609905 None:intergenic 25.0%
!!! AATAATCAGGAATGGTTTTA+TGG - Chr7:85611566-85611585 None:intergenic 25.0%
!!! ATGGAGCTTTTTCATTATTT+TGG + Chr7:85610914-85610933 MsG0780041021.01.T01:intron 25.0%
!!! ATTTTTTCATTAAGGTCTTC+AGG + Chr7:85609471-85609490 MsG0780041021.01.T01:intron 25.0%
!!! CAATAATTTTCCGTTTTGAA+GGG + Chr7:85610571-85610590 MsG0780041021.01.T01:intron 25.0%
!!! CACTTATAAACACTTTTTTC+GGG + Chr7:85609887-85609906 MsG0780041021.01.T01:intron 25.0%
!!! CCACTTATAAACACTTTTTT+CGG + Chr7:85609886-85609905 MsG0780041021.01.T01:intron 25.0%
AAATACAGAATAGAGAAGAG+AGG - Chr7:85610164-85610183 None:intergenic 30.0%
AATAAATTTACGAGTTGCCT+GGG + Chr7:85610522-85610541 MsG0780041021.01.T01:intron 30.0%
AATAGCTCTTATTAGAGTTG+GGG + Chr7:85609601-85609620 MsG0780041021.01.T01:intron 30.0%
AATCCTTCAATTTCCATCAA+TGG - Chr7:85611235-85611254 None:intergenic 30.0%
AATTGTTGTGTGAGATACAT+AGG + Chr7:85610108-85610127 MsG0780041021.01.T01:intron 30.0%
ATACAGGTTAGAATTCATTG+GGG + Chr7:85612006-85612025 MsG0780041021.01.T01:intron 30.0%
ATAGCATTTGCCTGAATTAT+GGG - Chr7:85611852-85611871 None:intergenic 30.0%
ATCCTTCAATTTCCATCAAT+GGG - Chr7:85611234-85611253 None:intergenic 30.0%
CTGTGTACAATATGAATTAC+TGG - Chr7:85609968-85609987 None:intergenic 30.0%
CTTCATAATATTCTCAATGG+GGG - Chr7:85611684-85611703 None:intergenic 30.0%
GAATAGCTCTTATTAGAGTT+GGG + Chr7:85609600-85609619 MsG0780041021.01.T01:intron 30.0%
GACCTTTAGATTTAAACAGA+TGG - Chr7:85611775-85611794 None:intergenic 30.0%
GCTTCATAATATTCTCAATG+GGG - Chr7:85611685-85611704 None:intergenic 30.0%
GGTTAAAATACCCTTCAAAA+CGG - Chr7:85610584-85610603 None:intergenic 30.0%
GGTTGTAGAAATATGTTTCT+TGG + Chr7:85610335-85610354 MsG0780041021.01.T01:intron 30.0%
GTATACAGGTTAGAATTCAT+TGG + Chr7:85612004-85612023 MsG0780041021.01.T01:intron 30.0%
GTTAGGAAAATAATCAGGAA+TGG - Chr7:85611574-85611593 None:intergenic 30.0%
TCATTCTTGGACAAATAACT+AGG - Chr7:85610432-85610451 None:intergenic 30.0%
TCTCTTCTCTATTCTGTATT+TGG + Chr7:85610163-85610182 MsG0780041021.01.T01:intron 30.0%
TGAATAGCTCTTATTAGAGT+TGG + Chr7:85609599-85609618 MsG0780041021.01.T01:intron 30.0%
TGTACAATATGAATTACTGG+AGG - Chr7:85609965-85609984 None:intergenic 30.0%
TTCTATTTGTCTTACATGTG+CGG + Chr7:85610239-85610258 MsG0780041021.01.T01:intron 30.0%
! ACAAATTTTGAATCTTCCAC+AGG - Chr7:85610049-85610068 None:intergenic 30.0%
! ATCTTGGATTTTCCTTGAAT+TGG + Chr7:85611126-85611145 MsG0780041021.01.T01:intron 30.0%
! TCGTTGCTAGTTTATTATCA+TGG - Chr7:85612279-85612298 None:intergenic 30.0%
! TGAATCTCATACTTGATGAT+AGG + Chr7:85610937-85610956 MsG0780041021.01.T01:intron 30.0%
!! AGGTTCTTTTTCACTATACT+GGG + Chr7:85611482-85611501 MsG0780041021.01.T01:intron 30.0%
!! ATATAATGGGTAGAATTTGC+TGG + Chr7:85609552-85609571 MsG0780041021.01.T01:intron 30.0%
!! ATTTCCTATTCTAGAGCTAT+TGG - Chr7:85609938-85609957 None:intergenic 30.0%
!! CCGAAAAAAGTGTTTATAAG+TGG - Chr7:85609889-85609908 None:intergenic 30.0%
!! TTCCAGAGTTGATACTTATA+TGG + Chr7:85611447-85611466 MsG0780041021.01.T01:CDS 30.0%
!! TTTCCTATTCTAGAGCTATT+GGG - Chr7:85609937-85609956 None:intergenic 30.0%
!!! ACATTACAAGTTGGTTTTGT+AGG - Chr7:85609644-85609663 None:intergenic 30.0%
!!! GTTTTTTAGAAGTGACTATG+AGG + Chr7:85611381-85611400 MsG0780041021.01.T01:intron 30.0%
!!! TTTTTTTCATTTGAGACGCA+CGG + Chr7:85610138-85610157 MsG0780041021.01.T01:intron 30.0%
AAGAAATGTGTCAGATACAG+TGG - Chr7:85609297-85609316 None:intergenic 35.0%
ACACACTATCTTGTGTATAC+AGG + Chr7:85611990-85612009 MsG0780041021.01.T01:intron 35.0%
ACATCTCTCACATTACAAGT+TGG - Chr7:85609653-85609672 None:intergenic 35.0%
ACTAAGCAACTATGGAATTG+GGG + Chr7:85610766-85610785 MsG0780041021.01.T01:intron 35.0%
AGAATAACACCATCAACTTG+TGG - Chr7:85610019-85610038 None:intergenic 35.0%
AGCTGAATACTTTCTTGATG+AGG + Chr7:85611805-85611824 MsG0780041021.01.T01:intron 35.0%
CAAATACCTGAAACAAGAGT+CGG - Chr7:85612088-85612107 None:intergenic 35.0%
CAATAAATTTACGAGTTGCC+TGG + Chr7:85610521-85610540 MsG0780041021.01.T01:intron 35.0%
CACCACTTATAAACACTTTC+AGG + Chr7:85609674-85609693 MsG0780041021.01.T01:intron 35.0%
CACTAAGCAACTATGGAATT+GGG + Chr7:85610765-85610784 MsG0780041021.01.T01:intron 35.0%
CAGAAGAAAATACCTGTGTA+TGG - Chr7:85611932-85611951 None:intergenic 35.0%
CATAGCATTTGCCTGAATTA+TGG - Chr7:85611853-85611872 None:intergenic 35.0%
CCAAGTGACAAGTATATTCA+TGG + Chr7:85610895-85610914 MsG0780041021.01.T01:intron 35.0%
CCATGAATATACTTGTCACT+TGG - Chr7:85610898-85610917 None:intergenic 35.0%
GGTCATATTAAACCCAATGT+AGG + Chr7:85609695-85609714 MsG0780041021.01.T01:intron 35.0%
GTATTAACCAAGCTCATTCT+TGG - Chr7:85610445-85610464 None:intergenic 35.0%
TAAAAGTAAGAGAGAACGTG+AGG - Chr7:85609400-85609419 None:intergenic 35.0%
TATGTCAACAGTCCTACATT+GGG - Chr7:85609710-85609729 None:intergenic 35.0%
TATTTGTCCAAGAATGAGCT+TGG + Chr7:85610435-85610454 MsG0780041021.01.T01:intron 35.0%
TCAAGTTTCTCTTCTCTTTC+TGG + Chr7:85610190-85610209 MsG0780041021.01.T01:intron 35.0%
TGCTTTCGTTGGATTGAATT+AGG - Chr7:85609843-85609862 None:intergenic 35.0%
TTCCCATTGATGGAAATTGA+AGG + Chr7:85611229-85611248 MsG0780041021.01.T01:CDS 35.0%
! ACATGTGACAATTTTGCACA+TGG - Chr7:85610858-85610877 None:intergenic 35.0%
! CTCTAACTTTAGCTCATTGT+TGG + Chr7:85610078-85610097 MsG0780041021.01.T01:intron 35.0%
!! AAAAGAAGCATTTGTTGAGC+AGG + Chr7:85610793-85610812 MsG0780041021.01.T01:intron 35.0%
!! ACAAGTTGATGGTGTTATTC+TGG + Chr7:85610018-85610037 MsG0780041021.01.T01:intron 35.0%
!! CAGGTTCTTTTTCACTATAC+TGG + Chr7:85611481-85611500 MsG0780041021.01.T01:intron 35.0%
!! CTGAAAGTGTTTATAAGTGG+TGG - Chr7:85609676-85609695 None:intergenic 35.0%
!! GACCTGAAAGTGTTTATAAG+TGG - Chr7:85609679-85609698 None:intergenic 35.0%
AACATTGTAGCATGATCAGG+AGG - Chr7:85611623-85611642 None:intergenic 40.0%
AAGGAACCGTGATTTAGAAG+TGG + Chr7:85612308-85612327 MsG0780041021.01.T01:three_prime_UTR 40.0%
AAGTATACAGCTCAAGTCCT+GGG + Chr7:85608973-85608992 MsG0780041021.01.T01:CDS 40.0%
ACTCAACTCACTCGACAATA+AGG + Chr7:85612237-85612256 MsG0780041021.01.T01:CDS 40.0%
ACTCGACCACTTCTAAATCA+CGG - Chr7:85612317-85612336 None:intergenic 40.0%
AGAACATGTTGCCCTTACAA+TGG - Chr7:85612147-85612166 None:intergenic 40.0%
ATCACCTGATGCCATTGTAA+GGG + Chr7:85612133-85612152 MsG0780041021.01.T01:CDS 40.0%
CAAGATGATGACTGATTACC+CGG - Chr7:85611112-85611131 None:intergenic 40.0%
CGCCATATAAGTATCAACTC+TGG - Chr7:85611452-85611471 None:intergenic 40.0%
CTAGCAACGACTCAACAATA+AGG + Chr7:85612289-85612308 MsG0780041021.01.T01:exon 40.0%
GAATACTTTCTTGATGAGGC+AGG + Chr7:85611809-85611828 MsG0780041021.01.T01:CDS 40.0%
GACAATAAGGAACCATGACA+CGG + Chr7:85612250-85612269 MsG0780041021.01.T01:CDS 40.0%
GACAGATGCAATATTACCTC+AGG - Chr7:85611355-85611374 None:intergenic 40.0%
GATCATGCTACAATGTTAGC+TGG + Chr7:85611626-85611645 MsG0780041021.01.T01:intron 40.0%
GCACTAAGCAACTATGGAAT+TGG + Chr7:85610764-85610783 MsG0780041021.01.T01:intron 40.0%
GCTAACATTGTAGCATGATC+AGG - Chr7:85611626-85611645 None:intergenic 40.0%
GTATGTCAACAGTCCTACAT+TGG - Chr7:85609711-85609730 None:intergenic 40.0%
GTGCTAATTACACTAGTACC+TGG + Chr7:85610406-85610425 MsG0780041021.01.T01:intron 40.0%
TACATGACTTCAATGTGTGC+AGG - Chr7:85612356-85612375 None:intergenic 40.0%
TAGTGCTCCAAATACTGCAA+AGG - Chr7:85610750-85610769 None:intergenic 40.0%
TCCAAATACTGCAAAGGAAC+TGG - Chr7:85610744-85610763 None:intergenic 40.0%
TGCAGTATCATGCTTACTGA+TGG + Chr7:85609044-85609063 MsG0780041021.01.T01:CDS 40.0%
TTTAGCTGACTACCATACAC+AGG + Chr7:85611917-85611936 MsG0780041021.01.T01:CDS 40.0%
! AACTTACAAGCTGCTTTCGT+TGG - Chr7:85609854-85609873 None:intergenic 40.0%
! AGGCAAGCTAAATGATTTGC+AGG + Chr7:85609491-85609510 MsG0780041021.01.T01:intron 40.0%
! ATTGTGTCTCCACAAGTTGA+TGG + Chr7:85610007-85610026 MsG0780041021.01.T01:intron 40.0%
! CGACTCTTGTTTCAGGTATT+TGG + Chr7:85612086-85612105 MsG0780041021.01.T01:intron 40.0%
! GGTGAAAAGCATGCATGTAT+TGG - Chr7:85611545-85611564 None:intergenic 40.0%
! GTTTCAGGTATTTGGTATGC+TGG + Chr7:85612094-85612113 MsG0780041021.01.T01:intron 40.0%
! TAGGTGATGTTCGAGTTTCA+TGG - Chr7:85612508-85612527 None:intergenic 40.0%
! TTTGGAGCACTAAGCAACTA+TGG + Chr7:85610758-85610777 MsG0780041021.01.T01:intron 40.0%
!! ACTCCCAATAGCTCTAGAAT+AGG + Chr7:85609931-85609950 MsG0780041021.01.T01:intron 40.0%
!! GAAATACCGACTCTTGTTTC+AGG + Chr7:85612079-85612098 MsG0780041021.01.T01:intron 40.0%
!! GGTACTGGTTGATAAGTGAT+TGG + Chr7:85609573-85609592 MsG0780041021.01.T01:intron 40.0%
AACCATACCGGTGATCAGAA+AGG - Chr7:85611285-85611304 None:intergenic 45.0%
AGTCTTCCAACTCATGTTCG+TGG + Chr7:85612189-85612208 MsG0780041021.01.T01:CDS 45.0%
ATGACAATCACCAGTTCCAC+AGG - Chr7:85610963-85610982 None:intergenic 45.0%
CAAACCAGCATTAACATCCC+AGG - Chr7:85610542-85610561 None:intergenic 45.0%
CAAATGGGACCCATCTGATA+TGG - Chr7:85612037-85612056 None:intergenic 45.0%
CAGGTATTTGGTATGCTGGT+TGG + Chr7:85612098-85612117 MsG0780041021.01.T01:intron 45.0%
CGAGTTTCCTTTCTGATCAC+CGG + Chr7:85611275-85611294 MsG0780041021.01.T01:CDS 45.0%
CGGGTAATCAGTCATCATCT+TGG + Chr7:85611110-85611129 MsG0780041021.01.T01:intron 45.0%
CGGTGATCAGAAAGGAAACT+CGG - Chr7:85611277-85611296 None:intergenic 45.0%
CTTGGACAAATAACTAGGCC+AGG - Chr7:85610427-85610446 None:intergenic 45.0%
GAAGTATACAGCTCAAGTCC+TGG + Chr7:85608972-85608991 MsG0780041021.01.T01:CDS 45.0%
GATCACCTGATGCCATTGTA+AGG + Chr7:85612132-85612151 MsG0780041021.01.T01:CDS 45.0%
GCAGAGCTAAAATAACACCC+AGG - Chr7:85608993-85609012 None:intergenic 45.0%
GCCAGTTCCTTTGCAGTATT+TGG + Chr7:85610740-85610759 MsG0780041021.01.T01:intron 45.0%
GGAGAGCAGTTCATCTTGAT+CGG + Chr7:85612210-85612229 MsG0780041021.01.T01:CDS 45.0%
GGTGAAGATTCGAGAATCTG+AGG - Chr7:85609149-85609168 None:intergenic 45.0%
GTGATTTAGAAGTGGTCGAG+TGG + Chr7:85612316-85612335 MsG0780041021.01.T01:three_prime_UTR 45.0%
TGAAGATGCAAAACCAGACG+AGG - Chr7:85611059-85611078 None:intergenic 45.0%
TGTTATTCTGGCAAGTCCTG+TGG + Chr7:85610030-85610049 MsG0780041021.01.T01:intron 45.0%
TTATATGGCGTCAACAGTGC+AGG + Chr7:85611462-85611481 MsG0780041021.01.T01:CDS 45.0%
TTATCATGGACTCCGTGTCA+TGG - Chr7:85612265-85612284 None:intergenic 45.0%
TTCCTTTCTGATCACCGGTA+TGG + Chr7:85611280-85611299 MsG0780041021.01.T01:intron 45.0%
TTTGCCTGAATTATGGGCCA+TGG - Chr7:85611846-85611865 None:intergenic 45.0%
! CATACTTGATGATAGGCCTG+TGG + Chr7:85610944-85610963 MsG0780041021.01.T01:intron 45.0%
! GAGACGAGTTTTCCCATTGA+TGG + Chr7:85611219-85611238 MsG0780041021.01.T01:CDS 45.0%
!! GAAACTCGGTGTGTTTAGCA+GGG - Chr7:85611263-85611282 None:intergenic 45.0%
!! TGGGTAGAATTTGCTGGTAC+TGG + Chr7:85609558-85609577 MsG0780041021.01.T01:intron 45.0%
AGCTATTGGGAGTCTCACAC+TGG - Chr7:85609924-85609943 None:intergenic 50.0%
ATGATGACTGATTACCCGGC+AGG - Chr7:85611108-85611127 None:intergenic 50.0%
ATGCCCAGTCTTGAGTGTGA+CGG - Chr7:85609735-85609754 None:intergenic 50.0%
ATGGGCTCAACTGCATCATC+AGG - Chr7:85609170-85609189 None:intergenic 50.0%
CACTGAGTATCAGACTGACC+AGG - Chr7:85609769-85609788 None:intergenic 50.0%
CAGCAGCATGCTCTCTCTAT+CGG + Chr7:85611881-85611900 MsG0780041021.01.T01:CDS 50.0%
CTGGTCAGTCTGATACTCAG+TGG + Chr7:85609767-85609786 MsG0780041021.01.T01:intron 50.0%
GCAACATGTTCTGCTGCTCT+GGG + Chr7:85612155-85612174 MsG0780041021.01.T01:CDS 50.0%
GGGGTCTCACCATATCAGAT+GGG + Chr7:85612025-85612044 MsG0780041021.01.T01:intron 50.0%
GTGTCAGATACAGTGGCATG+TGG - Chr7:85609290-85609309 None:intergenic 50.0%
GTTGCCCTTACAATGGCATC+AGG - Chr7:85612140-85612159 None:intergenic 50.0%
GTTGCCTGGGATGTTAATGC+TGG + Chr7:85610535-85610554 MsG0780041021.01.T01:intron 50.0%
TCATGCTGCTATTCCTCGTC+TGG + Chr7:85611043-85611062 MsG0780041021.01.T01:CDS 50.0%
TGATGATAGGCCTGTGGAAC+TGG + Chr7:85610950-85610969 MsG0780041021.01.T01:intron 50.0%
TGCACCATGGCCCATAATTC+AGG + Chr7:85611839-85611858 MsG0780041021.01.T01:CDS 50.0%
TGCTCTCCACGAACATGAGT+TGG - Chr7:85612198-85612217 None:intergenic 50.0%
TGGGGTCTCACCATATCAGA+TGG + Chr7:85612024-85612043 MsG0780041021.01.T01:intron 50.0%
!! GGAAACTCGGTGTGTTTAGC+AGG - Chr7:85611264-85611283 None:intergenic 50.0%
AATGTTTGCGCCTCCACCTG+GGG + Chr7:85612623-85612642 MsG0780041021.01.T01:three_prime_UTR 55.0%
ACCCCGTCACACTCAAGACT+GGG + Chr7:85609729-85609748 MsG0780041021.01.T01:intron 55.0%
AGACTGACCAGGTCACACTC+TGG - Chr7:85609758-85609777 None:intergenic 55.0%
CAATGTTTGCGCCTCCACCT+GGG + Chr7:85612622-85612641 MsG0780041021.01.T01:three_prime_UTR 55.0%
GGCAACATGTTCTGCTGCTC+TGG + Chr7:85612154-85612173 MsG0780041021.01.T01:CDS 55.0%
TACCCCGTCACACTCAAGAC+TGG + Chr7:85609728-85609747 MsG0780041021.01.T01:intron 55.0%
TCAATGTTTGCGCCTCCACC+TGG + Chr7:85612621-85612640 MsG0780041021.01.T01:three_prime_UTR 55.0%
TGATTACCCGGCAGGCTAGT+CGG - Chr7:85611100-85611119 None:intergenic 55.0%
TGCCCAGTCTTGAGTGTGAC+GGG - Chr7:85609734-85609753 None:intergenic 55.0%
TGGTAATTTCCCCCAGGTGG+AGG - Chr7:85612636-85612655 None:intergenic 55.0%
! GGCAGGCTTTTGATGCACCA+TGG + Chr7:85611826-85611845 MsG0780041021.01.T01:CDS 55.0%
!! TTAGTGTCCGACTAGCCTGC+CGG + Chr7:85611090-85611109 MsG0780041021.01.T01:CDS 55.0%
ATGTTTGCGCCTCCACCTGG+GGG + Chr7:85612624-85612643 MsG0780041021.01.T01:three_prime_UTR 60.0%
GCCCAGTCTTGAGTGTGACG+GGG - Chr7:85609733-85609752 None:intergenic 60.0%
TGGGCATCCAGAGTGTGACC+TGG + Chr7:85609748-85609767 MsG0780041021.01.T01:intron 60.0%
!! TAGTGTCCGACTAGCCTGCC+GGG + Chr7:85611091-85611110 MsG0780041021.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 85608943 85612657 85608943 ID=MsG0780041021.01;Name=MsG0780041021.01
Chr7 mRNA 85608943 85612657 85608943 ID=MsG0780041021.01.T01;Parent=MsG0780041021.01;Name=MsG0780041021.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0.66|0.57|1|0.66|0.85|7|365|264
Chr7 exon 85608943 85609065 85608943 ID=MsG0780041021.01.T01:exon:17876;Parent=MsG0780041021.01.T01
Chr7 exon 85609152 85609247 85609152 ID=MsG0780041021.01.T01:exon:17877;Parent=MsG0780041021.01.T01
Chr7 exon 85611041 85611112 85611041 ID=MsG0780041021.01.T01:exon:17878;Parent=MsG0780041021.01.T01
Chr7 exon 85611211 85611296 85611211 ID=MsG0780041021.01.T01:exon:17879;Parent=MsG0780041021.01.T01
Chr7 exon 85611390 85611483 85611390 ID=MsG0780041021.01.T01:exon:17880;Parent=MsG0780041021.01.T01
Chr7 exon 85611807 85611938 85611807 ID=MsG0780041021.01.T01:exon:17881;Parent=MsG0780041021.01.T01
Chr7 exon 85612101 85612657 85612101 ID=MsG0780041021.01.T01:exon:17882;Parent=MsG0780041021.01.T01
Chr7 CDS 85608943 85609065 85608943 ID=MsG0780041021.01.T01:cds;Parent=MsG0780041021.01.T01
Chr7 CDS 85609152 85609247 85609152 ID=MsG0780041021.01.T01:cds;Parent=MsG0780041021.01.T01
Chr7 CDS 85611041 85611112 85611041 ID=MsG0780041021.01.T01:cds;Parent=MsG0780041021.01.T01
Chr7 CDS 85611211 85611296 85611211 ID=MsG0780041021.01.T01:cds;Parent=MsG0780041021.01.T01
Chr7 CDS 85611390 85611483 85611390 ID=MsG0780041021.01.T01:cds;Parent=MsG0780041021.01.T01
Chr7 CDS 85611807 85611938 85611807 ID=MsG0780041021.01.T01:cds;Parent=MsG0780041021.01.T01
Chr7 CDS 85612101 85612292 85612101 ID=MsG0780041021.01.T01:cds;Parent=MsG0780041021.01.T01
Chr7 three_prime_UTR 85612293 85612657 85612293 ID=MsG0780041021.01.T01:three_prime_utr;Parent=MsG0780041021.01.T01
Gene Sequence

>MsG0780041021.01.T01

ATGTTGCAGATCCCATCAATTCATATTCTGAAGTATACAGCTCAAGTCCTGGGTGTTATTTTAGCTCTGCTAGACGATTCTGATGAATCTGTACAATTAACTGCAGTATCATGCTTACTGATGATTCTCGAATCTTCACCTGATGATGCAGTTGAGCCCATTTTGCTTAATCTTTCAATACGGCTTCGAAATCTACAAGTGCGTCAGTTTACTTTCAATGTTCATGCTGCTATTCCTCGTCTGGTTTTGCATCTTCATGATGAAGATGTTAGTGTCCGACTAGCCTGCCGGAATACTTTGAGACGAGTTTTCCCATTGATGGAAATTGAAGGATTGCTTGCCCTGCTAAACACACCGAGTTTCCTTTCTGATCACCGAAGTGACTATGAGGACTTTCTACGAGACATTGCAAAGCAATTTACACAGCATCTTCTTTCCAGAGTTGATACTTATATGGCGTCAACAGTGCAGCTGAATACTTTCTTGATGAGGCAGGCTTTTGATGCACCATGGCCCATAATTCAGGCAAATGCTATGTACTTAAGCAGCAGCATGCTCTCTCTATCGGACAGTCAGCACATTTTAGCTGACTACCATACACAGGTATTTGGTATGCTGGTTGGAAAAATGAGTCGATCACCTGATGCCATTGTAAGGGCAACATGTTCTGCTGCTCTGGGCTTGTTGCTTAAGTCTTCCAACTCATGTTCGTGGAGAGCAGTTCATCTTGATCGGCTAGACTCAACTCACTCGACAATAAGGAACCATGACACGGAGTCCATGATAATAAACTAG
Protein sequence

>MsG0780041021.01.T01

MLQIPSIHILKYTAQVLGVILALLDDSDESVQLTAVSCLLMILESSPDDAVEPILLNLSIRLRNLQVRQFTFNVHAAIPRLVLHLHDEDVSVRLACRNTLRRVFPLMEIEGLLALLNTPSFLSDHRSDYEDFLRDIAKQFTQHLLSRVDTYMASTVQLNTFLMRQAFDAPWPIIQANAMYLSSSMLSLSDSQHILADYHTQVFGMLVGKMSRSPDAIVRATCSAALGLLLKSSNSCSWRAVHLDRLDSTHSTIRNHDTESMIIN*