AlfalfaGEDB | MsG0180004426.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0180004426.01	0.867709	1.120294e-65	3.948807e-62
MsG0080048618.01	MsG0180004426.01	0.804510	2.086737e-49	1.077880e-46
MsG0180000470.01	MsG0180004426.01	0.826778	2.250421e-54	2.130983e-51
MsG0180000550.01	MsG0180004426.01	0.805628	1.217947e-49	6.475134e-47
MsG0180001063.01	MsG0180004426.01	0.812702	3.712058e-51	2.376685e-48
MsG0180002089.01	MsG0180004426.01	0.807548	4.790038e-50	2.675542e-47
MsG0180002482.01	MsG0180004426.01	0.804146	2.484914e-49	1.271660e-46
MsG0180002563.01	MsG0180004426.01	0.811048	8.508395e-51	5.213019e-48
MsG0180003669.01	MsG0180004426.01	0.811067	8.427200e-51	5.165725e-48
MsG0180003686.01	MsG0180004426.01	0.800490	1.406371e-48	6.557119e-46
MsG0180004264.01	MsG0180004426.01	0.802416	5.668383e-49	2.775236e-46
MsG0180004426.01	MsG0180005954.01	0.804989	1.657435e-49	8.668207e-47
MsG0180004426.01	MsG0180005993.01	0.807875	4.082568e-50	2.299823e-47
MsG0180004426.01	MsG0180006261.01	0.826418	2.742867e-54	2.570932e-51
MsG0180004426.01	MsG0280006299.01	0.851175	1.053354e-60	2.113883e-57
MsG0180004426.01	MsG0280006456.01	0.800340	1.508958e-48	7.008970e-46
MsG0180004426.01	MsG0280010443.01	0.808516	2.979990e-50	1.707398e-47
MsG0180004426.01	MsG0280010698.01	0.819419	1.173297e-52	9.024062e-50
MsG0180004426.01	MsG0280011032.01	0.801998	6.909016e-49	3.346645e-46
MsG0180004426.01	MsG0280011086.01	0.810523	1.104736e-50	6.674136e-48
MsG0180004426.01	MsG0280011156.01	0.800915	1.152171e-48	5.430346e-46
MsG0180004426.01	MsG0280011175.01	0.813913	2.011482e-51	1.330589e-48
MsG0180004426.01	MsG0380011494.01	0.841681	4.099539e-58	6.069061e-55
MsG0180004426.01	MsG0380011609.01	0.831544	1.571542e-55	1.710948e-52
MsG0180004426.01	MsG0380014139.01	0.847733	9.595750e-60	1.721732e-56
MsG0180004426.01	MsG0380014173.01	0.836973	6.834130e-57	8.752601e-54
MsG0180004426.01	MsG0380014251.01	0.804171	2.455114e-49	1.257208e-46
MsG0180004426.01	MsG0380014537.01	0.808311	3.296495e-50	1.878609e-47
MsG0180004426.01	MsG0380015566.01	0.864139	1.507195e-64	4.682300e-61
MsG0180004426.01	MsG0380015720.01	0.821764	3.393876e-53	2.786608e-50
MsG0180004426.01	MsG0380016285.01	0.811412	7.093364e-51	4.387905e-48
MsG0180004426.01	MsG0380016475.01	0.814870	1.236137e-51	8.391093e-49
MsG0180004426.01	MsG0380016581.01	0.811651	6.292783e-51	3.916976e-48
MsG0180004426.01	MsG0380016910.01	0.807102	5.956021e-50	3.288379e-47
MsG0180004426.01	MsG0380017060.01	0.812689	3.735532e-51	2.390942e-48
MsG0180004426.01	MsG0380017543.01	0.802579	5.247747e-49	2.579769e-46
MsG0180004426.01	MsG0380017680.01	0.812841	3.460153e-51	2.223363e-48
MsG0180004426.01	MsG0480018425.01	0.800709	1.268809e-48	5.948439e-46
MsG0180004426.01	MsG0480020002.01	0.805723	1.163253e-49	6.199918e-47
MsG0180004426.01	MsG0480021215.01	0.801273	9.730895e-49	4.627924e-46
MsG0180004426.01	MsG0480021407.01	0.804311	2.295476e-49	1.179701e-46
MsG0180004426.01	MsG0480021536.01	0.826007	3.435160e-54	3.182414e-51
MsG0180004426.01	MsG0480021558.01	0.862651	4.357282e-64	1.285504e-60
MsG0180004426.01	MsG0480022795.01	0.811802	5.834337e-51	3.646343e-48
MsG0180004426.01	MsG0480023248.01	0.816193	6.272752e-52	4.415204e-49
MsG0180004426.01	MsG0480023636.01	0.808146	3.574493e-50	2.028227e-47
MsG0180004426.01	MsG0480023707.01	0.812083	5.066439e-51	3.190631e-48
MsG0180004426.01	MsG0580024402.01	0.834608	2.716139e-56	3.239803e-53
MsG0180004426.01	MsG0580024552.01	0.804670	1.932657e-49	1.002466e-46
MsG0180004426.01	MsG0580026188.01	0.816170	6.348787e-52	4.465861e-49
MsG0180004426.01	MsG0580027018.01	0.800080	1.704461e-48	7.864618e-46
MsG0180004426.01	MsG0680030366.01	0.807344	5.292710e-50	2.940749e-47
MsG0180004426.01	MsG0680031087.01	0.833542	5.022832e-56	5.802714e-53
MsG0180004426.01	MsG0680035467.01	0.803837	2.880463e-49	1.462493e-46
MsG0180004426.01	MsG0680035694.01	0.810107	1.358491e-50	8.118307e-48
MsG0180004426.01	MsG0780037918.01	0.806607	7.575911e-50	4.129729e-47
MsG0180004426.01	MsG0780037942.01	0.820302	7.370159e-53	5.809606e-50
MsG0180004426.01	MsG0780038276.01	0.806103	9.677123e-50	5.207788e-47
MsG0180004426.01	MsG0780038503.01	0.805158	1.528095e-49	8.026448e-47
MsG0180004426.01	MsG0780039252.01	0.837912	3.927379e-57	5.176520e-54
MsG0180004426.01	MsG0780040596.01	0.837051	6.529993e-57	8.382305e-54
MsG0180004426.01	MsG0780040604.01	0.806689	7.283000e-50	3.978331e-47
MsG0180004426.01	MsG0780040704.01	0.808327	3.270348e-50	1.864598e-47
MsG0180004426.01	MsG0780041021.01	0.802040	6.774410e-49	3.284924e-46
MsG0180004426.01	MsG0780041456.01	0.839123	1.913080e-57	2.616224e-54
MsG0180004426.01	MsG0780041674.01	0.809171	2.158908e-50	1.258595e-47
MsG0180004426.01	MsG0880041836.01	0.846361	2.279350e-59	3.913409e-56
MsG0180004426.01	MsG0880042301.01	0.820983	5.139564e-53	4.129233e-50
MsG0180004426.01	MsG0880042800.01	0.808775	2.624480e-50	1.513796e-47
MsG0180004426.01	MsG0880044416.01	0.809793	1.587061e-50	9.406733e-48
MsG0180004426.01	MsG0880045371.01	0.803748	3.005677e-49	1.522523e-46
MsG0180004426.01	MsG0880045691.01	0.813092	3.048568e-51	1.972060e-48
MsG0180004426.01	MsG0880045736.01	0.805945	1.044891e-49	5.600607e-47
MsG0180004426.01	MsG0880045848.01	0.824091	9.738123e-54	8.540553e-51
MsG0180004426.01	MsG0880045896.01	0.800917	1.150712e-48	5.423794e-46
MsG0180004426.01	MsG0880045937.01	0.848925	4.491108e-60	8.373912e-57
MsG0180004426.01	MsG0880046479.01	0.810387	1.182528e-50	7.118084e-48
MsG0180004426.01	MsG0880046620.01	0.818424	1.974008e-52	1.477172e-49

PPI

Gene1	Gene2	Type

Find 8 sgRNAs with CRISPR-Local

Find 7 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGCTCAGCAGTAATGAGTT+TGG	0.430118	1:+77761849	MsG0180004426.01.T01:CDS
TTGAAGAAGAGACAAGAAGA+AGG	0.558667	1:+77761759	MsG0180004426.01.T01:CDS
TGTACTCTTTGAGCACCACC+AGG	0.609997	1:-77761824	None:intergenic
GATGAAGATGATGAGATGCC+TGG	0.615030	1:+77761806	MsG0180004426.01.T01:CDS
AAGGCAGCAAGCTCAGCAAG+AGG	0.624868	1:+77761778	MsG0180004426.01.T01:CDS
ATGAGTTTGGAGATGTGCTG+TGG	0.657658	1:+77761862	MsG0180004426.01.T01:CDS
CATGGAGCTGGATGAGTGTG+AGG	0.667513	1:+77761712	None:intergenic
GAAGATGATGAGATGCCTGG+TGG	0.783796	1:+77761809	MsG0180004426.01.T01:CDS

CRISPR-GE

sgRNA_sequence	Strand	Position	Region	GC_content
TTGAAGAAGAGACAAGAAGA+AGG	+	Chr1:77761759-77761778	MsG0180004426.01.T01:CDS	35.0%
ATGAGTTTGGAGATGTGCTG+TGG	+	Chr1:77761862-77761881	MsG0180004426.01.T01:CDS	45.0%
GATGAAGATGATGAGATGCC+TGG	+	Chr1:77761806-77761825	MsG0180004426.01.T01:CDS	45.0%
GTGCTCAGCAGTAATGAGTT+TGG	+	Chr1:77761849-77761868	MsG0180004426.01.T01:CDS	45.0%
GAAGATGATGAGATGCCTGG+TGG	+	Chr1:77761809-77761828	MsG0180004426.01.T01:CDS	50.0%
TGTACTCTTTGAGCACCACC+AGG	-	Chr1:77761827-77761846	None:intergenic	50.0%
AAGGCAGCAAGCTCAGCAAG+AGG	+	Chr1:77761778-77761797	MsG0180004426.01.T01:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	77761723	77761887	77761723	ID=MsG0180004426.01;Name=MsG0180004426.01
Chr1	mRNA	77761723	77761887	77761723	ID=MsG0180004426.01.T01;Parent=MsG0180004426.01;Name=MsG0180004426.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|54
Chr1	exon	77761723	77761887	77761723	ID=MsG0180004426.01.T01:exon:7357;Parent=MsG0180004426.01.T01
Chr1	CDS	77761723	77761887	77761723	ID=MsG0180004426.01.T01:cds;Parent=MsG0180004426.01.T01

Gene Sequence	>MsG0180004426.01.T01 ATGAGTGTGAGGAGACAACACTTCATGACGTCAACATTGAAGAAGAGACAAGAAGAAGGCAGCAAGCTCAGCAAGAGGCATATGATGAAGATGATGAGATGCCTGGTGGTGCTCAAAGAGTACAGTGTGCTCAGCAGTAATGAGTTTGGAGATGTGCTGTGGTAG
Protein sequence	>MsG0180004426.01.T01 MSVRRQHFMTSTLKKRQEEGSKLSKRHMMKMMRCLVVLKEYSVLSSNEFGDVLW*

M. sativa cultivar ZhongmuNo.1 / MsG0180004426.01