AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041081.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041081.01.T01 MTR_1g061050 87.989 358 43 0 1 358 1 358 0.0 657
MsG0780041081.01.T01 MTR_5g069055 85.754 358 51 0 1 358 1 358 0.0 641
MsG0780041081.01.T01 MTR_5g069050 79.609 358 58 1 1 358 42 384 0.0 582
MsG0780041081.01.T01 MTR_5g096670 78.492 358 76 1 1 358 1 357 0.0 573
MsG0780041081.01.T01 MTR_4g057670 55.966 352 150 4 8 358 53 400 1.66e-135 392
MsG0780041081.01.T01 MTR_4g071860 55.966 352 150 4 8 358 53 400 2.23e-135 392
MsG0780041081.01.T01 MTR_1g109200 53.652 356 160 4 4 358 40 391 4.33e-133 385
MsG0780041081.01.T01 MTR_4g071880 50.141 355 154 6 8 358 51 386 1.55e-113 335
MsG0780041081.01.T01 MTR_7g103920 73.958 96 0 1 112 207 11 81 1.29e-40 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041081.01.T01 AT2G36460 87.151 358 46 0 1 358 1 358 0.0 654
MsG0780041081.01.T01 AT3G52930 87.709 358 44 0 1 358 1 358 0.0 650
MsG0780041081.01.T01 AT5G03690 85.237 359 52 1 1 358 1 359 0.0 615
MsG0780041081.01.T01 AT5G03690 85.673 349 49 1 11 358 45 393 0.0 600
MsG0780041081.01.T01 AT4G26530 79.330 358 74 0 1 358 1 358 0.0 586
MsG0780041081.01.T01 AT4G26530 79.330 358 74 0 1 358 1 358 0.0 586
MsG0780041081.01.T01 AT4G26530 79.330 358 74 0 1 358 1 358 0.0 586
MsG0780041081.01.T01 AT4G26520 73.184 358 96 0 1 358 1 358 0.0 538
MsG0780041081.01.T01 AT4G26520 73.315 356 95 0 1 356 1 356 0.0 535
MsG0780041081.01.T01 AT4G26520 72.346 358 96 1 1 358 1 355 0.0 527
MsG0780041081.01.T01 AT4G26520 72.346 358 96 1 1 358 1 355 0.0 527
MsG0780041081.01.T01 AT2G36460 88.015 267 32 0 92 358 1 267 7.18e-179 497
MsG0780041081.01.T01 AT2G36460 88.015 267 32 0 92 358 1 267 7.18e-179 497
MsG0780041081.01.T01 AT5G03690 86.517 267 35 1 93 358 1 267 7.91e-165 461
MsG0780041081.01.T01 AT5G03690 86.517 267 35 1 93 358 1 267 7.91e-165 461
MsG0780041081.01.T01 AT4G38970 54.802 354 155 4 6 358 49 398 9.09e-134 387
MsG0780041081.01.T01 AT2G01140 54.830 352 154 4 8 358 44 391 3.03e-133 386
MsG0780041081.01.T01 AT2G21330 53.955 354 158 4 6 358 50 399 9.36e-132 382
MsG0780041081.01.T01 AT2G21330 51.977 354 155 5 6 358 50 389 8.18e-123 359
MsG0780041081.01.T01 AT4G38970 55.598 259 113 2 6 263 49 306 2.47e-96 291
MsG0780041081.01.T01 AT2G21330 53.668 259 118 2 6 263 50 307 5.82e-94 283

Find 124 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCCTTCAATTTGTTCA+TGG 0.195538 7:-86251119 None:intergenic
TGGGCACTTTCTTTCTCTTT+TGG 0.238095 7:+86251148 MsG0780041081.01.T01:CDS
CTCAGGAAGCATTCATTTCT+AGG 0.287182 7:+86251233 MsG0780041081.01.T01:CDS
AGGAGTTCTTCCTGGCATTA+AGG 0.292833 7:+86250568 MsG0780041081.01.T01:CDS
GATCCGTCCACTAGGATTTC+GGG 0.297279 7:-86250830 None:intergenic
GCAACTTTGGGAACTTATAA+AGG 0.304285 7:+86251274 MsG0780041081.01.T01:CDS
CACCAGCTTCATAGTACTTC+TGG 0.307791 7:-86250670 None:intergenic
AGATCCGTCCACTAGGATTT+CGG 0.313330 7:-86250831 None:intergenic
GGCCTTGCAGCGAACCGTTC+CGG 0.326308 7:+86251027 MsG0780041081.01.T01:CDS
CCTGCTGTTGTGTTCTTGTC+TGG 0.328998 7:+86251058 MsG0780041081.01.T01:CDS
TGAGGTGACTGAACGTGTTC+TGG 0.341250 7:+86250874 MsG0780041081.01.T01:CDS
GATGAATCAACTGGTACAAT+TGG 0.356390 7:+86249737 MsG0780041081.01.T01:CDS
GGCTAACTCACAAGCAACTT+TGG 0.373884 7:+86251261 MsG0780041081.01.T01:CDS
GTATATTCGGCTATAACTTC+AGG 0.378009 7:-86250998 None:intergenic
AAGTACCTGCAGCTGTCTTT+TGG 0.387833 7:-86249889 None:intergenic
TTGGGTGGTGGTTTCCCCAT+TGG 0.390053 7:-86250621 None:intergenic
AAGCACCAGGGGTGGTGAAT+AGG 0.392542 7:-86249823 None:intergenic
CAAGGCCTTAACGGTATATT+CGG 0.396094 7:-86251011 None:intergenic
AGGATTTCGGGCTCCACTAT+AGG 0.396396 7:-86250818 None:intergenic
CTCTGAGTCTCTCCATGTTA+AGG 0.403479 7:+86251321 MsG0780041081.01.T01:CDS
AAGGAAGGAGGAGTTCTTCC+TGG 0.405511 7:+86250560 MsG0780041081.01.T01:CDS
GGTTCGCTGCAAGGCCTTAA+CGG 0.417489 7:-86251020 None:intergenic
AAGCATTCATTTCTAGGTGC+AGG 0.421155 7:+86251239 MsG0780041081.01.T01:CDS
GCTAACTCACAAGCAACTTT+GGG 0.426606 7:+86251262 MsG0780041081.01.T01:CDS
CAGCACGCCACTTAGCAAAT+CGG 0.429319 7:-86250694 None:intergenic
GGAAACCACCACCCAAGGTT+TGG 0.439052 7:+86250628 MsG0780041081.01.T01:CDS
AGTACTCTCAAGGCATGGGC+TGG 0.441574 7:+86251187 MsG0780041081.01.T01:CDS
GCTGCTTACATTGGCAGCCC+AGG 0.446993 7:+86249695 MsG0780041081.01.T01:CDS
GACAGCTCAGATGGCTCGTT+GGG 0.447524 7:-86250731 None:intergenic
AAGGGCACTGTAGAGCTTGC+TGG 0.449470 7:+86250596 MsG0780041081.01.T01:CDS
GACATTCTCAACATTAATGC+TGG 0.457419 7:-86249771 None:intergenic
TTGAGAATGTCGAAACAAAC+AGG 0.460067 7:+86249783 MsG0780041081.01.T01:CDS
ACCCAAGGTTTGGATGGGCT+TGG 0.462623 7:+86250638 MsG0780041081.01.T01:CDS
GCGGCAAGGATACCCTTCCC+TGG 0.464998 7:-86249713 None:intergenic
CCAGACAAGAACACAACAGC+AGG 0.465132 7:-86251058 None:intergenic
TAGAGCTTGCTGGAACCAAT+GGG 0.468785 7:+86250606 MsG0780041081.01.T01:CDS
TATAAAGGTGATTCTACCCT+TGG 0.470420 7:+86251289 MsG0780041081.01.T01:CDS
AGCACGCCACTTAGCAAATC+GGG 0.476929 7:-86250693 None:intergenic
ACCTTTCGTAGAGTTGTTGA+AGG 0.478093 7:+86250541 MsG0780041081.01.T01:CDS
ACCACCACCCAAGGTTTGGA+TGG 0.478747 7:+86250632 MsG0780041081.01.T01:CDS
CCCATCCAAACCTTGGGTGG+TGG 0.479234 7:-86250633 None:intergenic
TGGTACAATTGGGAAGCGTT+TGG 0.480915 7:+86249748 MsG0780041081.01.T01:CDS
GACCAAGCCCATCCAAACCT+TGG 0.485707 7:-86250640 None:intergenic
CGGGCTCCACTATAGGAACT+AGG 0.485762 7:-86250811 None:intergenic
ACCAAGCCCATCCAAACCTT+GGG 0.487111 7:-86250639 None:intergenic
CAATGCCATGAACAAATTGA+AGG 0.489466 7:+86251114 MsG0780041081.01.T01:CDS
TGGCGTGCTGTCCTCAAGAT+TGG 0.490006 7:+86250707 MsG0780041081.01.T01:CDS
ATGAATCAACTGGTACAATT+GGG 0.496848 7:+86249738 MsG0780041081.01.T01:CDS
AGCCGGAACGGTTCGCTGCA+AGG 0.504681 7:-86251029 None:intergenic
GCTGTTGTGTTCTTGTCTGG+TGG 0.505060 7:+86251061 MsG0780041081.01.T01:CDS
TATAGCCGAATATACCGTTA+AGG 0.505464 7:+86251006 MsG0780041081.01.T01:CDS
GTAGAGTTGTTGAAGGAAGG+AGG 0.506426 7:+86250548 MsG0780041081.01.T01:CDS
GTAGAGCTTGCTGGAACCAA+TGG 0.507341 7:+86250605 MsG0780041081.01.T01:CDS
TATATTCGGCTATAACTTCA+GGG 0.510081 7:-86250997 None:intergenic
CTATACCAAAAGACAGCTGC+AGG 0.511625 7:+86249884 MsG0780041081.01.T01:CDS
GTACTCTCAAGGCATGGGCT+GGG 0.512522 7:+86251188 MsG0780041081.01.T01:CDS
GGGTGGTGAATAGGAGTTCA+CGG 0.514483 7:-86249814 None:intergenic
GAATGGCCTAGTTCCTATAG+TGG 0.514663 7:+86250805 MsG0780041081.01.T01:CDS
TCTATCCACGAGAACGCCTA+TGG 0.515668 7:+86250752 MsG0780041081.01.T01:CDS
CCCTTGTCAACCTTAATGCC+AGG 0.519001 7:-86250578 None:intergenic
CCCCGGTTCAGATTCTCAAA+AGG 0.519538 7:+86250970 MsG0780041081.01.T01:CDS
TCAATTTGTTCATGGCATTG+AGG 0.520997 7:-86251111 None:intergenic
CTGAGGCAGTCAAAAGCACC+AGG 0.521879 7:-86249836 None:intergenic
CTTGCCGCTGATGAATCAAC+TGG 0.521919 7:+86249728 MsG0780041081.01.T01:CDS
ATTGCCAATGCTGCTTACAT+TGG 0.521934 7:+86249686 MsG0780041081.01.T01:CDS
TTCGTAGAGTTGTTGAAGGA+AGG 0.523483 7:+86250545 MsG0780041081.01.T01:CDS
GCTGCCAATGTAAGCAGCAT+TGG 0.524935 7:-86249690 None:intergenic
AGCAGAGTACTCTCAAGGCA+TGG 0.525031 7:+86251182 MsG0780041081.01.T01:CDS
CGGCAAGGATACCCTTCCCT+GGG 0.530056 7:-86249712 None:intergenic
TGAAAACATTAAGAAGGCTC+AGG 0.537239 7:+86251216 MsG0780041081.01.T01:CDS
TCCTTCAACAACTCTACGAA+AGG 0.538329 7:-86250542 None:intergenic
TCCTGGCATTAAGGTTGACA+AGG 0.539046 7:+86250577 MsG0780041081.01.T01:CDS
TGCCAGAAGTACTATGAAGC+TGG 0.539839 7:+86250668 MsG0780041081.01.T01:CDS
GCTGTCATATGCCAAGAGAA+TGG 0.540178 7:+86250788 MsG0780041081.01.T01:CDS
TTACATTGGCAGCCCAGGGA+AGG 0.541012 7:+86249700 MsG0780041081.01.T01:CDS
ATTGTGATGTTCATTTAGAG+AGG 0.545823 7:+86251360 MsG0780041081.01.T01:three_prime_UTR
AAAAGGACTGATGATGTCTA+TGG 0.551554 7:-86251397 None:intergenic
ACAACAGCAGGAACTGCAGC+CGG 0.552294 7:-86251046 None:intergenic
TAGGAACTAGGCCATTCTCT+TGG 0.555043 7:-86250799 None:intergenic
TGGTGGACAGAGTGAGGAGG+AGG 0.559419 7:+86251078 MsG0780041081.01.T01:CDS
GAAAGATGAAAACATTAAGA+AGG 0.560338 7:+86251210 MsG0780041081.01.T01:CDS
AGCAGGAACTGCAGCCGGAA+CGG 0.563737 7:-86251041 None:intergenic
GAACTCCTATTCACCACCCC+TGG 0.564552 7:+86249818 MsG0780041081.01.T01:CDS
CTAGACCATAGGCGTTCTCG+TGG 0.564863 7:-86250757 None:intergenic
AGCATTCATTTCTAGGTGCA+GGG 0.565780 7:+86251240 MsG0780041081.01.T01:CDS
TACATTGGCAGCCCAGGGAA+GGG 0.567931 7:+86249701 MsG0780041081.01.T01:CDS
AGACAGCTCAGATGGCTCGT+TGG 0.568425 7:-86250732 None:intergenic
CCACCACCCAAGGTTTGGAT+GGG 0.574869 7:+86250633 MsG0780041081.01.T01:CDS
CTGCTTACATTGGCAGCCCA+GGG 0.576119 7:+86249696 MsG0780041081.01.T01:CDS
AAGCCCAACATGGTAACCCC+CGG 0.580471 7:+86250953 MsG0780041081.01.T01:CDS
GCAGAGTACTCTCAAGGCAT+GGG 0.580912 7:+86251183 MsG0780041081.01.T01:CDS
CTGGTGCCCGATTTGCTAAG+TGG 0.581290 7:+86250687 MsG0780041081.01.T01:CDS
AGTATTTGTAATCCTTAACA+TGG 0.585318 7:-86251333 None:intergenic
AATGCCATGAACAAATTGAA+GGG 0.590609 7:+86251115 MsG0780041081.01.T01:CDS
TCGTGGATAGACAGCTCAGA+TGG 0.594167 7:-86250740 None:intergenic
TGTCATGAGATCCGTCCACT+AGG 0.594938 7:-86250838 None:intergenic
AATGGGGAAACCACCACCCA+AGG 0.600888 7:+86250623 MsG0780041081.01.T01:CDS
AATTGAAGGGAAAGAAGCCG+TGG 0.606270 7:+86251128 MsG0780041081.01.T01:CDS
CTTGTCTGGTGGACAGAGTG+AGG 0.610600 7:+86251072 MsG0780041081.01.T01:CDS
AAGCCCATCCAAACCTTGGG+TGG 0.615549 7:-86250636 None:intergenic
GCTCGTTGGGACCAATCTTG+AGG 0.620621 7:-86250718 None:intergenic
CAGTTGATTCATCAGCGGCA+AGG 0.629317 7:-86249727 None:intergenic
GCAGTCAAAAGCACCAGGGG+TGG 0.632487 7:-86249831 None:intergenic
CTCAGAGGCACCATCACCAA+GGG 0.635565 7:-86251305 None:intergenic
GGTGATTCTACCCTTGGTGA+TGG 0.637135 7:+86251295 MsG0780041081.01.T01:CDS
ACTTCAGCAGAGTACTCTCA+AGG 0.637395 7:+86251177 MsG0780041081.01.T01:CDS
GAGCCCGAAATCCTAGTGGA+CGG 0.645213 7:+86250827 MsG0780041081.01.T01:CDS
AAAGAGAAAGAAAGTGCCCA+CGG 0.650023 7:-86251145 None:intergenic
GATCATCATGTTCTACTCGA+AGG 0.653456 7:+86250920 MsG0780041081.01.T01:CDS
AGTGGAGCCCGAAATCCTAG+TGG 0.657774 7:+86250823 MsG0780041081.01.T01:CDS
CCTGGCATTAAGGTTGACAA+GGG 0.666501 7:+86250578 MsG0780041081.01.T01:CDS
GTCTGGTGGACAGAGTGAGG+AGG 0.667820 7:+86251075 MsG0780041081.01.T01:CDS
ACTCAGAGGCACCATCACCA+AGG 0.668916 7:-86251306 None:intergenic
GAGGCAGTCAAAAGCACCAG+GGG 0.673021 7:-86249834 None:intergenic
TGTACCAGTTGATTCATCAG+CGG 0.678605 7:-86249732 None:intergenic
CTTAACATGGAGAGACTCAG+AGG 0.681234 7:-86251320 None:intergenic
ATTGAAGGGAAAGAAGCCGT+GGG 0.685142 7:+86251129 MsG0780041081.01.T01:CDS
ATATTCGGCTATAACTTCAG+GGG 0.697227 7:-86250996 None:intergenic
TTCTTCAAGAGCAAATACCA+AGG 0.700911 7:+86249021 MsG0780041081.01.T01:CDS
AGCATAGCGAGCTAGACCAT+AGG 0.708256 7:-86250768 None:intergenic
TGAGGCAGTCAAAAGCACCA+GGG 0.711166 7:-86249835 None:intergenic
TGACATCAACAAGTGTGCTG+AGG 0.731985 7:+86250856 MsG0780041081.01.T01:CDS
AGAGCTTGCTGGAACCAATG+GGG 0.738968 7:+86250607 MsG0780041081.01.T01:CDS
CATATAAAATCACACCACTG+AGG 0.751130 7:-86249853 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTTAAAAAAATAAAGTTT+AGG - Chr7:86250504-86250523 None:intergenic 10.0%
!! TAACATATATGAAAATAGTT+TGG + Chr7:86250277-86250296 MsG0780041081.01.T01:intron 15.0%
!!! AGATTAAGCAATTTATTTTA+GGG - Chr7:86249302-86249321 None:intergenic 15.0%
!!! TAGATTAAGCAATTTATTTT+AGG - Chr7:86249303-86249322 None:intergenic 15.0%
!!! TTTTAAATGTAATTAATTGC+AGG + Chr7:86250515-86250534 MsG0780041081.01.T01:intron 15.0%
!! TCTCAAATTATTATGTGTTT+CGG - Chr7:86249399-86249418 None:intergenic 20.0%
!!! GTAAGATTTTAATCTTGTTT+TGG + Chr7:86249530-86249549 MsG0780041081.01.T01:intron 20.0%
! AAATAACCATTCGCATTAAA+AGG - Chr7:86249208-86249227 None:intergenic 25.0%
! AATAACCATTCGCATTAAAA+GGG - Chr7:86249207-86249226 None:intergenic 25.0%
! AGACATAAACTGAAAAACAA+GGG - Chr7:86250036-86250055 None:intergenic 25.0%
! AGATTAACAAACTGCTATTA+CGG + Chr7:86249604-86249623 MsG0780041081.01.T01:intron 25.0%
! AGTATTTGTAATCCTTAACA+TGG - Chr7:86251336-86251355 None:intergenic 25.0%
! ATGTTAAGTATTTCCTTACT+AGG + Chr7:86249943-86249962 MsG0780041081.01.T01:intron 25.0%
! CATATGTCAATACATAAGAA+AGG - Chr7:86249995-86250014 None:intergenic 25.0%
! CTGCAAAAACATCATAAATA+AGG - Chr7:86249920-86249939 None:intergenic 25.0%
! GAAAGATGAAAACATTAAGA+AGG + Chr7:86251210-86251229 MsG0780041081.01.T01:CDS 25.0%
! TAGACATAAACTGAAAAACA+AGG - Chr7:86250037-86250056 None:intergenic 25.0%
! TCATTAGTTATTAGAACTTC+TGG - Chr7:86250247-86250266 None:intergenic 25.0%
! TGAGAAAATGATATAATCTG+AGG + Chr7:86249414-86249433 MsG0780041081.01.T01:intron 25.0%
! TTAAGAGACAATAATAGCAT+CGG - Chr7:86249087-86249106 None:intergenic 25.0%
!! AAAGTCTGAAGCATAATAAA+AGG - Chr7:86249240-86249259 None:intergenic 25.0%
!! AAGTCTGAAGCATAATAAAA+GGG - Chr7:86249239-86249258 None:intergenic 25.0%
!!! CATATTTTTTCAGTCTTCAT+CGG + Chr7:86250476-86250495 MsG0780041081.01.T01:intron 25.0%
!!! TCTTATTTTGTCATATTTGC+AGG - Chr7:86249493-86249512 None:intergenic 25.0%
AATGCCATGAACAAATTGAA+GGG + Chr7:86251115-86251134 MsG0780041081.01.T01:CDS 30.0%
ATGAATCAACTGGTACAATT+GGG + Chr7:86249738-86249757 MsG0780041081.01.T01:CDS 30.0%
ATTGTGATGTTCATTTAGAG+AGG + Chr7:86251360-86251379 MsG0780041081.01.T01:three_prime_UTR 30.0%
CAGTTTATGTCTAATGTTCT+TGG + Chr7:86250044-86250063 MsG0780041081.01.T01:intron 30.0%
CGATGAAGACTGAAAAAATA+TGG - Chr7:86250478-86250497 None:intergenic 30.0%
CGGACATTATTAACAATGAA+AGG - Chr7:86249067-86249086 None:intergenic 30.0%
GAAATAAGTTCAGCAACTAA+TGG - Chr7:86250225-86250244 None:intergenic 30.0%
TATATTCGGCTATAACTTCA+GGG - Chr7:86251000-86251019 None:intergenic 30.0%
TTAATCTATGCTTGATCTAC+CGG + Chr7:86249315-86249334 MsG0780041081.01.T01:intron 30.0%
!!! AGTTATACGCTGTTTTGAAA+AGG - Chr7:86250306-86250325 None:intergenic 30.0%
!!! TTTTTATCCTTTAGAGCTTC+TGG - Chr7:86250384-86250403 None:intergenic 30.0%
AAGCTATCATAGAGAGACTA+TGG - Chr7:86250151-86250170 None:intergenic 35.0%
ATATTCGGCTATAACTTCAG+GGG - Chr7:86250999-86251018 None:intergenic 35.0%
CAATGCCATGAACAAATTGA+AGG + Chr7:86251114-86251133 MsG0780041081.01.T01:CDS 35.0%
CATATAAAATCACACCACTG+AGG - Chr7:86249856-86249875 None:intergenic 35.0%
GACATTCTCAACATTAATGC+TGG - Chr7:86249774-86249793 None:intergenic 35.0%
GAGTAAATGAGAGAATACCT+TGG - Chr7:86249041-86249060 None:intergenic 35.0%
GATGAATCAACTGGTACAAT+TGG + Chr7:86249737-86249756 MsG0780041081.01.T01:CDS 35.0%
GTATATTCGGCTATAACTTC+AGG - Chr7:86251001-86251020 None:intergenic 35.0%
TATAAAGGTGATTCTACCCT+TGG + Chr7:86251289-86251308 MsG0780041081.01.T01:CDS 35.0%
TATAGCCGAATATACCGTTA+AGG + Chr7:86251006-86251025 MsG0780041081.01.T01:CDS 35.0%
TCCAGATCAAAAGTCATGAT+AGG - Chr7:86249566-86249585 None:intergenic 35.0%
TGAAAACATTAAGAAGGCTC+AGG + Chr7:86251216-86251235 MsG0780041081.01.T01:CDS 35.0%
TTCTTCAAGAGCAAATACCA+AGG + Chr7:86249021-86249040 MsG0780041081.01.T01:CDS 35.0%
TTGAGAATGTCGAAACAAAC+AGG + Chr7:86249783-86249802 MsG0780041081.01.T01:CDS 35.0%
! CAGTGGTGTGATTTTATATG+AGG + Chr7:86249856-86249875 MsG0780041081.01.T01:CDS 35.0%
! CTTATTTCCAGAAGCTCTAA+AGG + Chr7:86250374-86250393 MsG0780041081.01.T01:intron 35.0%
! CTTTCCCTTCAATTTGTTCA+TGG - Chr7:86251122-86251141 None:intergenic 35.0%
! GCAACTTTGGGAACTTATAA+AGG + Chr7:86251274-86251293 MsG0780041081.01.T01:CDS 35.0%
! TATTATGTGTTTCGGTGTGT+CGG - Chr7:86249391-86249410 None:intergenic 35.0%
! TCAATTTGTTCATGGCATTG+AGG - Chr7:86251114-86251133 None:intergenic 35.0%
! TTGATCCCTTTTAATGCGAA+TGG + Chr7:86249199-86249218 MsG0780041081.01.T01:intron 35.0%
!! AACCTTTTGAGAATCTGAAC+CGG - Chr7:86250975-86250994 None:intergenic 35.0%
!! TTGCTCATTGATTCCTAGTA+AGG - Chr7:86249959-86249978 None:intergenic 35.0%
!!! ACTTTATTTTCAGTCGCCAT+TGG + Chr7:86250343-86250362 MsG0780041081.01.T01:intron 35.0%
!!! TTTCTCGTTTTCGTCGATTT+TGG + Chr7:86249151-86249170 MsG0780041081.01.T01:intron 35.0%
ACCTTTCGTAGAGTTGTTGA+AGG + Chr7:86250541-86250560 MsG0780041081.01.T01:CDS 40.0%
ATAATCCCAACCTACAGGTA+TGG - Chr7:86249469-86249488 None:intergenic 40.0%
ATATTGAGCCTACGAAGACA+CGG + Chr7:86249362-86249381 MsG0780041081.01.T01:intron 40.0%
ATCAGCTCAACTATGAAGCA+CGG - Chr7:86249445-86249464 None:intergenic 40.0%
CAAGGCCTTAACGGTATATT+CGG - Chr7:86251014-86251033 None:intergenic 40.0%
CAGACTTTCTCGAATTGTCA+TGG + Chr7:86249113-86249132 MsG0780041081.01.T01:intron 40.0%
GACGAAAACGAGAAAGATAG+AGG - Chr7:86249146-86249165 None:intergenic 40.0%
GATCATCATGTTCTACTCGA+AGG + Chr7:86250920-86250939 MsG0780041081.01.T01:CDS 40.0%
GCTAACTCACAAGCAACTTT+GGG + Chr7:86251262-86251281 MsG0780041081.01.T01:CDS 40.0%
TAACAAACTGCTATTACGGC+AGG + Chr7:86249608-86249627 MsG0780041081.01.T01:intron 40.0%
TCCTTCAACAACTCTACGAA+AGG - Chr7:86250545-86250564 None:intergenic 40.0%
TGATACCATACCTGTAGGTT+GGG + Chr7:86249461-86249480 MsG0780041081.01.T01:intron 40.0%
TTCGTAGAGTTGTTGAAGGA+AGG + Chr7:86250545-86250564 MsG0780041081.01.T01:CDS 40.0%
! AAACAAGAGCACAAGCATTC+CGG - Chr7:86249337-86249356 None:intergenic 40.0%
! AAGCATTCATTTCTAGGTGC+AGG + Chr7:86251239-86251258 MsG0780041081.01.T01:CDS 40.0%
! AGAGCTTCTGGAAATAAGCT+CGG - Chr7:86250372-86250391 None:intergenic 40.0%
! AGCATTCATTTCTAGGTGCA+GGG + Chr7:86251240-86251259 MsG0780041081.01.T01:CDS 40.0%
! ATTGCCAATGCTGCTTACAT+TGG + Chr7:86249686-86249705 MsG0780041081.01.T01:CDS 40.0%
! GCCTATCATGACTTTTGATC+TGG + Chr7:86249562-86249581 MsG0780041081.01.T01:intron 40.0%
! TGGGCACTTTCTTTCTCTTT+TGG + Chr7:86251148-86251167 MsG0780041081.01.T01:CDS 40.0%
! TGTACCAGTTGATTCATCAG+CGG - Chr7:86249735-86249754 None:intergenic 40.0%
!! AAAGAGAAAGAAAGTGCCCA+CGG - Chr7:86251148-86251167 None:intergenic 40.0%
!! ACCTTTTGAGAATCTGAACC+GGG - Chr7:86250974-86250993 None:intergenic 40.0%
!! CTCAGGAAGCATTCATTTCT+AGG + Chr7:86251233-86251252 MsG0780041081.01.T01:CDS 40.0%
!!! AACTCTTTTGAAGCCCAACA+TGG + Chr7:86250943-86250962 MsG0780041081.01.T01:CDS 40.0%
AATTGAAGGGAAAGAAGCCG+TGG + Chr7:86251128-86251147 MsG0780041081.01.T01:CDS 45.0%
AGATCCGTCCACTAGGATTT+CGG - Chr7:86250834-86250853 None:intergenic 45.0%
AGGAGTTCTTCCTGGCATTA+AGG + Chr7:86250568-86250587 MsG0780041081.01.T01:CDS 45.0%
ATTGAAGGGAAAGAAGCCGT+GGG + Chr7:86251129-86251148 MsG0780041081.01.T01:CDS 45.0%
CACCAGCTTCATAGTACTTC+TGG - Chr7:86250673-86250692 None:intergenic 45.0%
CCTGGCATTAAGGTTGACAA+GGG + Chr7:86250578-86250597 MsG0780041081.01.T01:CDS 45.0%
CTATACCAAAAGACAGCTGC+AGG + Chr7:86249884-86249903 MsG0780041081.01.T01:CDS 45.0%
CTCTGAGTCTCTCCATGTTA+AGG + Chr7:86251321-86251340 MsG0780041081.01.T01:CDS 45.0%
CTGATACCATACCTGTAGGT+TGG + Chr7:86249460-86249479 MsG0780041081.01.T01:intron 45.0%
CTTAACATGGAGAGACTCAG+AGG - Chr7:86251323-86251342 None:intergenic 45.0%
GAAATAAGCTCGGCAACCAA+TGG - Chr7:86250362-86250381 None:intergenic 45.0%
GAATGGCCTAGTTCCTATAG+TGG + Chr7:86250805-86250824 MsG0780041081.01.T01:CDS 45.0%
GCTGTCATATGCCAAGAGAA+TGG + Chr7:86250788-86250807 MsG0780041081.01.T01:CDS 45.0%
GGCTAACTCACAAGCAACTT+TGG + Chr7:86251261-86251280 MsG0780041081.01.T01:CDS 45.0%
GTAGAGTTGTTGAAGGAAGG+AGG + Chr7:86250548-86250567 MsG0780041081.01.T01:CDS 45.0%
TAGGAACTAGGCCATTCTCT+TGG - Chr7:86250802-86250821 None:intergenic 45.0%
TCCTGGCATTAAGGTTGACA+AGG + Chr7:86250577-86250596 MsG0780041081.01.T01:CDS 45.0%
TGACATCAACAAGTGTGCTG+AGG + Chr7:86250856-86250875 MsG0780041081.01.T01:CDS 45.0%
TGAGCTGATACCATACCTGT+AGG + Chr7:86249456-86249475 MsG0780041081.01.T01:intron 45.0%
! AAGTACCTGCAGCTGTCTTT+TGG - Chr7:86249892-86249911 None:intergenic 45.0%
! ACTTCAGCAGAGTACTCTCA+AGG + Chr7:86251177-86251196 MsG0780041081.01.T01:CDS 45.0%
!! CCTTTTGAGAATCTGAACCG+GGG - Chr7:86250973-86250992 None:intergenic 45.0%
!! CTTTTGAGAATCTGAACCGG+GGG - Chr7:86250972-86250991 None:intergenic 45.0%
!! TAGAGCTTGCTGGAACCAAT+GGG + Chr7:86250606-86250625 MsG0780041081.01.T01:CDS 45.0%
!! TGCCAGAAGTACTATGAAGC+TGG + Chr7:86250668-86250687 MsG0780041081.01.T01:CDS 45.0%
!! TGGTACAATTGGGAAGCGTT+TGG + Chr7:86249748-86249767 MsG0780041081.01.T01:CDS 45.0%
AAGGAAGGAGGAGTTCTTCC+TGG + Chr7:86250560-86250579 MsG0780041081.01.T01:CDS 50.0%
ACCAAGCCCATCCAAACCTT+GGG - Chr7:86250642-86250661 None:intergenic 50.0%
AGCACGCCACTTAGCAAATC+GGG - Chr7:86250696-86250715 None:intergenic 50.0%
AGCATAGCGAGCTAGACCAT+AGG - Chr7:86250771-86250790 None:intergenic 50.0%
AGGATTTCGGGCTCCACTAT+AGG - Chr7:86250821-86250840 None:intergenic 50.0%
CAGCACGCCACTTAGCAAAT+CGG - Chr7:86250697-86250716 None:intergenic 50.0%
CAGGCATAATCCCAACCTAC+AGG - Chr7:86249474-86249493 None:intergenic 50.0%
CCAGACAAGAACACAACAGC+AGG - Chr7:86251061-86251080 None:intergenic 50.0%
CCCCGGTTCAGATTCTCAAA+AGG + Chr7:86250970-86250989 MsG0780041081.01.T01:CDS 50.0%
CCCTTGTCAACCTTAATGCC+AGG - Chr7:86250581-86250600 None:intergenic 50.0%
CCTGCTGTTGTGTTCTTGTC+TGG + Chr7:86251058-86251077 MsG0780041081.01.T01:CDS 50.0%
CTTGCCGCTGATGAATCAAC+TGG + Chr7:86249728-86249747 MsG0780041081.01.T01:CDS 50.0%
GATCCGTCCACTAGGATTTC+GGG - Chr7:86250833-86250852 None:intergenic 50.0%
GCTGCCAATGTAAGCAGCAT+TGG - Chr7:86249693-86249712 None:intergenic 50.0%
GCTGTTGTGTTCTTGTCTGG+TGG + Chr7:86251061-86251080 MsG0780041081.01.T01:CDS 50.0%
GGGTGGTGAATAGGAGTTCA+CGG - Chr7:86249817-86249836 None:intergenic 50.0%
GGTGATTCTACCCTTGGTGA+TGG + Chr7:86251295-86251314 MsG0780041081.01.T01:CDS 50.0%
TCGTGGATAGACAGCTCAGA+TGG - Chr7:86250743-86250762 None:intergenic 50.0%
TCTATCCACGAGAACGCCTA+TGG + Chr7:86250752-86250771 MsG0780041081.01.T01:CDS 50.0%
TGAGGTGACTGAACGTGTTC+TGG + Chr7:86250874-86250893 MsG0780041081.01.T01:CDS 50.0%
TGTCATGAGATCCGTCCACT+AGG - Chr7:86250841-86250860 None:intergenic 50.0%
! AGCAGAGTACTCTCAAGGCA+TGG + Chr7:86251182-86251201 MsG0780041081.01.T01:CDS 50.0%
! CAGTTGATTCATCAGCGGCA+AGG - Chr7:86249730-86249749 None:intergenic 50.0%
! GCAGAGTACTCTCAAGGCAT+GGG + Chr7:86251183-86251202 MsG0780041081.01.T01:CDS 50.0%
!! AGAGCTTGCTGGAACCAATG+GGG + Chr7:86250607-86250626 MsG0780041081.01.T01:CDS 50.0%
!! GTAGAGCTTGCTGGAACCAA+TGG + Chr7:86250605-86250624 MsG0780041081.01.T01:CDS 50.0%
!! TGAGGCAGTCAAAAGCACCA+GGG - Chr7:86249838-86249857 None:intergenic 50.0%
AAGCACCAGGGGTGGTGAAT+AGG - Chr7:86249826-86249845 None:intergenic 55.0%
AAGCCCAACATGGTAACCCC+CGG + Chr7:86250953-86250972 MsG0780041081.01.T01:CDS 55.0%
AAGCCCATCCAAACCTTGGG+TGG - Chr7:86250639-86250658 None:intergenic 55.0%
AATGGGGAAACCACCACCCA+AGG + Chr7:86250623-86250642 MsG0780041081.01.T01:CDS 55.0%
ACAACAGCAGGAACTGCAGC+CGG - Chr7:86251049-86251068 None:intergenic 55.0%
ACCACCACCCAAGGTTTGGA+TGG + Chr7:86250632-86250651 MsG0780041081.01.T01:CDS 55.0%
AGACAGCTCAGATGGCTCGT+TGG - Chr7:86250735-86250754 None:intergenic 55.0%
AGTACTCTCAAGGCATGGGC+TGG + Chr7:86251187-86251206 MsG0780041081.01.T01:CDS 55.0%
AGTGGAGCCCGAAATCCTAG+TGG + Chr7:86250823-86250842 MsG0780041081.01.T01:CDS 55.0%
CCACCACCCAAGGTTTGGAT+GGG + Chr7:86250633-86250652 MsG0780041081.01.T01:CDS 55.0%
CGGGCTCCACTATAGGAACT+AGG - Chr7:86250814-86250833 None:intergenic 55.0%
CTAGACCATAGGCGTTCTCG+TGG - Chr7:86250760-86250779 None:intergenic 55.0%
CTGCTTACATTGGCAGCCCA+GGG + Chr7:86249696-86249715 MsG0780041081.01.T01:CDS 55.0%
GAACCGGGGGTTACCATGTT+GGG - Chr7:86250959-86250978 None:intergenic 55.0%
GAACTCCTATTCACCACCCC+TGG + Chr7:86249818-86249837 MsG0780041081.01.T01:CDS 55.0%
GACAGCTCAGATGGCTCGTT+GGG - Chr7:86250734-86250753 None:intergenic 55.0%
GACCAAGCCCATCCAAACCT+TGG - Chr7:86250643-86250662 None:intergenic 55.0%
GAGCCCGAAATCCTAGTGGA+CGG + Chr7:86250827-86250846 MsG0780041081.01.T01:CDS 55.0%
GCTCGTTGGGACCAATCTTG+AGG - Chr7:86250721-86250740 None:intergenic 55.0%
GGAAACCACCACCCAAGGTT+TGG + Chr7:86250628-86250647 MsG0780041081.01.T01:CDS 55.0%
GGTTCGCTGCAAGGCCTTAA+CGG - Chr7:86251023-86251042 None:intergenic 55.0%
GTACTCTCAAGGCATGGGCT+GGG + Chr7:86251188-86251207 MsG0780041081.01.T01:CDS 55.0%
TACATTGGCAGCCCAGGGAA+GGG + Chr7:86249701-86249720 MsG0780041081.01.T01:CDS 55.0%
TGAACCGGGGGTTACCATGT+TGG - Chr7:86250960-86250979 None:intergenic 55.0%
TGGCGTGCTGTCCTCAAGAT+TGG + Chr7:86250707-86250726 MsG0780041081.01.T01:CDS 55.0%
TTACATTGGCAGCCCAGGGA+AGG + Chr7:86249700-86249719 MsG0780041081.01.T01:CDS 55.0%
! ACCCAAGGTTTGGATGGGCT+TGG + Chr7:86250638-86250657 MsG0780041081.01.T01:CDS 55.0%
! CTTGTCTGGTGGACAGAGTG+AGG + Chr7:86251072-86251091 MsG0780041081.01.T01:CDS 55.0%
! TTGGGTGGTGGTTTCCCCAT+TGG - Chr7:86250624-86250643 None:intergenic 55.0%
!! AAGGGCACTGTAGAGCTTGC+TGG + Chr7:86250596-86250615 MsG0780041081.01.T01:CDS 55.0%
!! ACTCAGAGGCACCATCACCA+AGG - Chr7:86251309-86251328 None:intergenic 55.0%
!! CTCAGAGGCACCATCACCAA+GGG - Chr7:86251308-86251327 None:intergenic 55.0%
!! CTGAGGCAGTCAAAAGCACC+AGG - Chr7:86249839-86249858 None:intergenic 55.0%
!! CTGGTGCCCGATTTGCTAAG+TGG + Chr7:86250687-86250706 MsG0780041081.01.T01:CDS 55.0%
!! GAGGCAGTCAAAAGCACCAG+GGG - Chr7:86249837-86249856 None:intergenic 55.0%
!! GGTGCTTTTGACTGCCTCAG+TGG + Chr7:86249839-86249858 MsG0780041081.01.T01:CDS 55.0%
AGCAGGAACTGCAGCCGGAA+CGG - Chr7:86251044-86251063 None:intergenic 60.0%
CCCATCCAAACCTTGGGTGG+TGG - Chr7:86250636-86250655 None:intergenic 60.0%
CGGCAAGGATACCCTTCCCT+GGG - Chr7:86249715-86249734 None:intergenic 60.0%
GCTGCTTACATTGGCAGCCC+AGG + Chr7:86249695-86249714 MsG0780041081.01.T01:CDS 60.0%
! GTCGGTGTCCGTGTCTTCGT+AGG - Chr7:86249373-86249392 None:intergenic 60.0%
! GTCTGGTGGACAGAGTGAGG+AGG + Chr7:86251075-86251094 MsG0780041081.01.T01:CDS 60.0%
! TGGTGGACAGAGTGAGGAGG+AGG + Chr7:86251078-86251097 MsG0780041081.01.T01:CDS 60.0%
!! GCAGTCAAAAGCACCAGGGG+TGG - Chr7:86249834-86249853 None:intergenic 60.0%
AGCCGGAACGGTTCGCTGCA+AGG - Chr7:86251032-86251051 None:intergenic 65.0%
GCGGCAAGGATACCCTTCCC+TGG - Chr7:86249716-86249735 None:intergenic 65.0%
GGCCTTGCAGCGAACCGTTC+CGG + Chr7:86251027-86251046 MsG0780041081.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 86249015 86251418 86249015 ID=MsG0780041081.01;Name=MsG0780041081.01
Chr7 mRNA 86249015 86251418 86249015 ID=MsG0780041081.01.T01;Parent=MsG0780041081.01;Name=MsG0780041081.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.5|0.33|1|1|1|3|61|358
Chr7 exon 86249015 86249042 86249015 ID=MsG0780041081.01.T01:exon:19640;Parent=MsG0780041081.01.T01
Chr7 exon 86249678 86249905 86249678 ID=MsG0780041081.01.T01:exon:19641;Parent=MsG0780041081.01.T01
Chr7 exon 86250537 86251418 86250537 ID=MsG0780041081.01.T01:exon:19642;Parent=MsG0780041081.01.T01
Chr7 CDS 86249015 86249042 86249015 ID=MsG0780041081.01.T01:cds;Parent=MsG0780041081.01.T01
Chr7 CDS 86249678 86249905 86249678 ID=MsG0780041081.01.T01:cds;Parent=MsG0780041081.01.T01
Chr7 CDS 86250537 86251357 86250537 ID=MsG0780041081.01.T01:cds;Parent=MsG0780041081.01.T01
Chr7 three_prime_UTR 86251358 86251418 86251358 ID=MsG0780041081.01.T01:three_prime_utr;Parent=MsG0780041081.01.T01
Gene Sequence

>MsG0780041081.01.T01

ATGTCTTTCTTCAAGAGCAAATACCAAGATGAACTCATTGCCAATGCTGCTTACATTGGCAGCCCAGGGAAGGGTATCCTTGCCGCTGATGAATCAACTGGTACAATTGGGAAGCGTTTGGCCAGCATTAATGTTGAGAATGTCGAAACAAACAGGCGTGCTCTCCGTGAACTCCTATTCACCACCCCTGGTGCTTTTGACTGCCTCAGTGGTGTGATTTTATATGAGGAAACTCTATACCAAAAGACAGCTGCAGGAAAACCTTTCGTAGAGTTGTTGAAGGAAGGAGGAGTTCTTCCTGGCATTAAGGTTGACAAGGGCACTGTAGAGCTTGCTGGAACCAATGGGGAAACCACCACCCAAGGTTTGGATGGGCTTGGTCAGCGTTGCCAGAAGTACTATGAAGCTGGTGCCCGATTTGCTAAGTGGCGTGCTGTCCTCAAGATTGGTCCCAACGAGCCATCTGAGCTGTCTATCCACGAGAACGCCTATGGTCTAGCTCGCTATGCTGTCATATGCCAAGAGAATGGCCTAGTTCCTATAGTGGAGCCCGAAATCCTAGTGGACGGATCTCATGACATCAACAAGTGTGCTGAGGTGACTGAACGTGTTCTGGCTGCGTGCTACAAAGCTCTAAGTGATCATCATGTTCTACTCGAAGGAACTCTTTTGAAGCCCAACATGGTAACCCCCGGTTCAGATTCTCAAAAGGTTGCCCCTGAAGTTATAGCCGAATATACCGTTAAGGCCTTGCAGCGAACCGTTCCGGCTGCAGTTCCTGCTGTTGTGTTCTTGTCTGGTGGACAGAGTGAGGAGGAGGCAACACTCAACCTCAATGCCATGAACAAATTGAAGGGAAAGAAGCCGTGGGCACTTTCTTTCTCTTTTGGAAGAGCACTTCAGCAGAGTACTCTCAAGGCATGGGCTGGGAAAGATGAAAACATTAAGAAGGCTCAGGAAGCATTCATTTCTAGGTGCAGGGCTAACTCACAAGCAACTTTGGGAACTTATAAAGGTGATTCTACCCTTGGTGATGGTGCCTCTGAGTCTCTCCATGTTAAGGATTACAAATACTAA
Protein sequence

>MsG0780041081.01.T01

MSFFKSKYQDELIANAAYIGSPGKGILAADESTGTIGKRLASINVENVETNRRALRELLFTTPGAFDCLSGVILYEETLYQKTAAGKPFVELLKEGGVLPGIKVDKGTVELAGTNGETTTQGLDGLGQRCQKYYEAGARFAKWRAVLKIGPNEPSELSIHENAYGLARYAVICQENGLVPIVEPEILVDGSHDINKCAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDSQKVAPEVIAEYTVKALQRTVPAAVPAVVFLSGGQSEEEATLNLNAMNKLKGKKPWALSFSFGRALQQSTLKAWAGKDENIKKAQEAFISRCRANSQATLGTYKGDSTLGDGASESLHVKDYKY*