Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041329.01.T01 | PNX60831.1 | 94.262 | 244 | 14 | 0 | 38 | 281 | 2 | 245 | 1.26E-172 | 488 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041329.01.T01 | O24301 | 92.946 | 241 | 17 | 0 | 47 | 287 | 566 | 806 | 5.00E-163 | 477 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041329.01.T01 | A0A072U5L4 | 87.004 | 277 | 6 | 1 | 47 | 323 | 563 | 809 | 1.10e-166 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000513.01 | MsG0780041329.01 | 0.804079 | 2.566044e-49 | 1.310941e-46 |
| MsG0180000521.01 | MsG0780041329.01 | 0.815682 | 8.158043e-52 | 5.662448e-49 |
| MsG0780041329.01 | MsG0880047075.01 | 0.812663 | 3.784850e-51 | 2.420794e-48 |
| MsG0280011307.01 | MsG0780041329.01 | 0.800118 | 1.674473e-48 | 7.733565e-46 |
| MsG0580024468.01 | MsG0780041329.01 | 0.815250 | 1.017726e-51 | 6.980262e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041329.01.T01 | MTR_7g108930 | 87.004 | 277 | 6 | 1 | 47 | 323 | 563 | 809 | 2.79e-170 | 493 |
| MsG0780041329.01.T01 | MTR_1g088170 | 87.288 | 236 | 30 | 0 | 46 | 281 | 565 | 800 | 2.78e-150 | 442 |
| MsG0780041329.01.T01 | MTR_2g044070 | 69.710 | 241 | 72 | 1 | 49 | 289 | 563 | 802 | 1.96e-118 | 360 |
| MsG0780041329.01.T01 | MTR_4g124660 | 65.217 | 276 | 87 | 4 | 19 | 289 | 533 | 804 | 6.12e-118 | 358 |
| MsG0780041329.01.T01 | MTR_3g064610 | 62.963 | 243 | 90 | 0 | 47 | 289 | 570 | 812 | 1.41e-107 | 332 |
| MsG0780041329.01.T01 | MTR_5g076830 | 62.656 | 241 | 90 | 0 | 47 | 287 | 567 | 807 | 5.17e-106 | 328 |
| MsG0780041329.01.T01 | MTR_4g124660 | 65.766 | 222 | 67 | 4 | 19 | 235 | 533 | 750 | 5.37e-90 | 284 |
| MsG0780041329.01.T01 | MTR_6g478030 | 68.421 | 190 | 60 | 0 | 47 | 236 | 1331 | 1520 | 8.52e-85 | 279 |
| MsG0780041329.01.T01 | MTR_6g478000 | 53.306 | 242 | 87 | 1 | 46 | 287 | 524 | 739 | 2.26e-83 | 269 |
| MsG0780041329.01.T01 | MTR_6g478020 | 59.884 | 172 | 69 | 0 | 116 | 287 | 1 | 172 | 8.80e-71 | 238 |
| MsG0780041329.01.T01 | MTR_0277s0020 | 49.390 | 164 | 51 | 1 | 124 | 287 | 1159 | 1290 | 8.11e-47 | 169 |
| MsG0780041329.01.T01 | MTR_0419s0050 | 42.767 | 159 | 31 | 2 | 60 | 218 | 1 | 99 | 4.23e-33 | 118 |
| MsG0780041329.01.T01 | MTR_4g115620 | 31.401 | 207 | 132 | 4 | 54 | 256 | 475 | 675 | 1.01e-22 | 99.4 |
| MsG0780041329.01.T01 | MTR_5g091340 | 29.897 | 194 | 130 | 3 | 54 | 247 | 486 | 673 | 1.11e-22 | 99.4 |
| MsG0780041329.01.T01 | MTR_3g047380 | 29.381 | 194 | 131 | 3 | 54 | 247 | 479 | 666 | 1.84e-22 | 98.6 |
| MsG0780041329.01.T01 | MTR_0277s0030 | 55.882 | 68 | 30 | 0 | 60 | 127 | 1 | 68 | 1.45e-17 | 80.5 |
| MsG0780041329.01.T01 | MTR_0419s0010 | 45.000 | 60 | 33 | 0 | 224 | 283 | 12 | 71 | 4.55e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041329.01.T01 | AT4G02280 | 83.264 | 239 | 40 | 0 | 47 | 285 | 565 | 803 | 4.44e-149 | 439 |
| MsG0780041329.01.T01 | AT5G49190 | 70.909 | 275 | 50 | 1 | 47 | 321 | 496 | 740 | 6.70e-140 | 413 |
| MsG0780041329.01.T01 | AT5G49190 | 70.909 | 275 | 50 | 1 | 47 | 321 | 562 | 806 | 2.75e-139 | 414 |
| MsG0780041329.01.T01 | AT5G49190 | 70.909 | 275 | 50 | 1 | 47 | 321 | 552 | 796 | 2.98e-139 | 413 |
| MsG0780041329.01.T01 | AT3G43190 | 69.456 | 239 | 72 | 1 | 49 | 287 | 567 | 804 | 8.71e-118 | 358 |
| MsG0780041329.01.T01 | AT3G43190 | 69.456 | 239 | 72 | 1 | 49 | 287 | 567 | 804 | 8.71e-118 | 358 |
| MsG0780041329.01.T01 | AT5G20830 | 68.619 | 239 | 74 | 1 | 49 | 287 | 567 | 804 | 3.25e-117 | 357 |
| MsG0780041329.01.T01 | AT5G20830 | 68.619 | 239 | 74 | 1 | 49 | 287 | 567 | 804 | 3.25e-117 | 357 |
| MsG0780041329.01.T01 | AT5G20830 | 68.619 | 239 | 74 | 1 | 49 | 287 | 567 | 804 | 3.25e-117 | 357 |
| MsG0780041329.01.T01 | AT5G37180 | 60.996 | 241 | 94 | 0 | 47 | 287 | 313 | 553 | 6.20e-107 | 324 |
| MsG0780041329.01.T01 | AT5G37180 | 60.996 | 241 | 94 | 0 | 47 | 287 | 371 | 611 | 2.29e-106 | 324 |
| MsG0780041329.01.T01 | AT1G73370 | 61.826 | 241 | 92 | 0 | 47 | 287 | 525 | 765 | 3.08e-105 | 328 |
| MsG0780041329.01.T01 | AT1G73370 | 61.826 | 241 | 92 | 0 | 47 | 287 | 569 | 809 | 6.78e-105 | 328 |
| MsG0780041329.01.T01 | AT1G73370 | 61.826 | 241 | 92 | 0 | 47 | 287 | 569 | 809 | 6.78e-105 | 328 |
| MsG0780041329.01.T01 | AT5G37180 | 60.996 | 241 | 94 | 0 | 47 | 287 | 559 | 799 | 1.23e-104 | 325 |
| MsG0780041329.01.T01 | AT4G10120 | 32.432 | 185 | 119 | 3 | 54 | 238 | 329 | 507 | 2.51e-25 | 107 |
| MsG0780041329.01.T01 | AT4G10120 | 32.432 | 185 | 119 | 3 | 54 | 238 | 302 | 480 | 2.70e-25 | 107 |
| MsG0780041329.01.T01 | AT5G11110 | 32.547 | 212 | 127 | 6 | 54 | 258 | 478 | 680 | 3.02e-25 | 107 |
| MsG0780041329.01.T01 | AT4G10120 | 32.432 | 185 | 119 | 3 | 54 | 238 | 503 | 681 | 4.12e-25 | 106 |
| MsG0780041329.01.T01 | AT4G10120 | 32.432 | 185 | 119 | 3 | 54 | 238 | 503 | 681 | 4.12e-25 | 106 |
| MsG0780041329.01.T01 | AT4G10120 | 32.432 | 185 | 119 | 3 | 54 | 238 | 503 | 681 | 4.12e-25 | 106 |
| MsG0780041329.01.T01 | AT5G20280 | 31.401 | 207 | 132 | 4 | 54 | 256 | 476 | 676 | 4.58e-24 | 103 |
| MsG0780041329.01.T01 | AT1G04920 | 29.381 | 194 | 131 | 3 | 54 | 247 | 484 | 671 | 3.59e-21 | 94.7 |
Find 66 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCGGGTGTTTATAGTTTC+TGG | 0.169059 | 7:-89666007 | MsG0780041329.01.T01:CDS |
| CCTGCTTTCTATGAAGCTTT+TGG | 0.208308 | 7:-89666360 | MsG0780041329.01.T01:CDS |
| AGTTTCGCGCCTTTCAAGTT+TGG | 0.284457 | 7:+89665974 | None:intergenic |
| CATTCTTAAGTTCCGCGATT+TGG | 0.303335 | 7:-89665928 | MsG0780041329.01.T01:CDS |
| CTTGCCATGGAGAAGATTAT+AGG | 0.311186 | 7:+89666738 | None:intergenic |
| TGCAATTTCTTCTCTGTCAC+TGG | 0.337434 | 7:+89666602 | None:intergenic |
| TACAAGAGGCGCTTTCGTTC+AGG | 0.354837 | 7:-89666463 | MsG0780041329.01.T01:intron |
| TCTCGGTGTGATGTTAAATA+AGG | 0.357380 | 7:+89666899 | None:intergenic |
| ATCATCGAGAATGGTGTATC+AGG | 0.364771 | 7:-89666267 | MsG0780041329.01.T01:CDS |
| TCTATGTGGCAGCGGTTCTC+TGG | 0.368741 | 7:-89666775 | MsG0780041329.01.T01:CDS |
| ATTTACATCCGTTCCCTTGT+TGG | 0.371021 | 7:-89665891 | MsG0780041329.01.T01:intron |
| AAACAAATAGAGCACGTAAC+GGG | 0.395832 | 7:-89666509 | MsG0780041329.01.T01:CDS |
| ATAATTTGAATGGCGAGTTT+CGG | 0.431063 | 7:-89666545 | MsG0780041329.01.T01:CDS |
| GAACAGCAAATTGAGGGAAC+TGG | 0.434249 | 7:-89666667 | MsG0780041329.01.T01:CDS |
| TAATAGCTCTGAAGCTTTGT+CGG | 0.445074 | 7:+89666221 | None:intergenic |
| GATGAGTAACAAGTTTAAAG+TGG | 0.462752 | 7:+89666936 | None:intergenic |
| TTCTGAAAGGCTTATGACCT+TGG | 0.468081 | 7:-89666027 | MsG0780041329.01.T01:CDS |
| CCTACATTTGCCACTTGCCA+TGG | 0.473817 | 7:-89666303 | MsG0780041329.01.T01:CDS |
| GAAGCTTTGTCGGGATGATA+AGG | 0.476378 | 7:+89666231 | None:intergenic |
| AATAGCTCTGAAGCTTTGTC+GGG | 0.495829 | 7:+89666222 | None:intergenic |
| GTCAACCTTGTCGTAGTAGC+TGG | 0.497008 | 7:-89666645 | MsG0780041329.01.T01:CDS |
| CCATGGCAAGTGGCAAATGT+AGG | 0.497440 | 7:+89666303 | None:intergenic |
| ATGAAGCAGTATAATTTGAA+TGG | 0.498848 | 7:-89666555 | MsG0780041329.01.T01:CDS |
| GAAAGGCTTATGACCTTGGC+GGG | 0.504260 | 7:-89666023 | MsG0780041329.01.T01:CDS |
| TCGTAGAGGCCATGACTTGT+GGG | 0.505445 | 7:-89666329 | MsG0780041329.01.T01:CDS |
| TGCTAAGAACAGCAAATTGA+GGG | 0.505795 | 7:-89666673 | MsG0780041329.01.T01:CDS |
| AACTCTGTCAAGCCTTGCCA+TGG | 0.513366 | 7:+89666725 | None:intergenic |
| GTCGTAGAGGCCATGACTTG+TGG | 0.530169 | 7:-89666330 | MsG0780041329.01.T01:CDS |
| CATTGGAACAAAATATCTGA+TGG | 0.530428 | 7:-89666162 | MsG0780041329.01.T01:CDS |
| AAATAAACATGTCAAGATCT+CGG | 0.531558 | 7:+89666882 | None:intergenic |
| TGTAGGGAGCCCACAAGTCA+TGG | 0.533695 | 7:+89666320 | None:intergenic |
| AATATGTTTCCAAACTTGAA+AGG | 0.535761 | 7:-89665983 | MsG0780041329.01.T01:CDS |
| GCAGCGGTTCTCTGGCAGAC+CGG | 0.536845 | 7:-89666767 | MsG0780041329.01.T01:CDS |
| TTTGCGTCATCCGTTGCTAG+TGG | 0.538185 | 7:+89665737 | None:intergenic |
| TGAAAGGCTTATGACCTTGG+CGG | 0.539734 | 7:-89666024 | MsG0780041329.01.T01:CDS |
| CCAAAAGCTTCATAGAAAGC+AGG | 0.542321 | 7:+89666360 | None:intergenic |
| CATGGCAAGTGGCAAATGTA+GGG | 0.543387 | 7:+89666304 | None:intergenic |
| ATGCTAAGAACAGCAAATTG+AGG | 0.543438 | 7:-89666674 | MsG0780041329.01.T01:CDS |
| AATTTATCTTTGTCTCTATG+TGG | 0.544510 | 7:-89666789 | MsG0780041329.01.T01:CDS |
| GTAAGGAGGATCCAAACCAT+TGG | 0.560253 | 7:-89666179 | MsG0780041329.01.T01:CDS |
| ACATTTGCCACTTGCCATGG+TGG | 0.569444 | 7:-89666300 | MsG0780041329.01.T01:CDS |
| AAATAAGGTGTTGGTACTGA+AGG | 0.572100 | 7:+89666914 | None:intergenic |
| ATTTGAATGGCGAGTTTCGG+TGG | 0.579247 | 7:-89666542 | MsG0780041329.01.T01:CDS |
| TTGAAAGGCGCGAAACTCGA+CGG | 0.580968 | 7:-89665968 | MsG0780041329.01.T01:CDS |
| CCATTCTCGATGATCTCAGC+AGG | 0.589073 | 7:+89666276 | None:intergenic |
| CATGGAAGATCTATTCTGAA+AGG | 0.590172 | 7:-89666040 | MsG0780041329.01.T01:CDS |
| AGAAGATTATAGGCTTTGAC+CGG | 0.590577 | 7:+89666748 | None:intergenic |
| CCTGCTGAGATCATCGAGAA+TGG | 0.592122 | 7:-89666276 | MsG0780041329.01.T01:CDS |
| TCTTTGTCTCTATGTGGCAG+CGG | 0.599137 | 7:-89666783 | MsG0780041329.01.T01:CDS |
| AAATTCTGTTCCACTAGCAA+CGG | 0.604202 | 7:-89665747 | MsG0780041329.01.T01:CDS |
| CTATAATCTTCTCCATGGCA+AGG | 0.605694 | 7:-89666737 | MsG0780041329.01.T01:CDS |
| TGTGATGTTAAATAAGGTGT+TGG | 0.610520 | 7:+89666905 | None:intergenic |
| AGATCATAGCATACCAACAA+GGG | 0.611010 | 7:+89665878 | None:intergenic |
| AACAAATAGAGCACGTAACG+GGG | 0.612694 | 7:-89666508 | MsG0780041329.01.T01:CDS |
| AGCAGGACCACCATGGCAAG+TGG | 0.613714 | 7:+89666293 | None:intergenic |
| GAAACTATAAACACCCGCCA+AGG | 0.615765 | 7:+89666010 | None:intergenic |
| AATAATTAAACAGGTACACA+TGG | 0.618388 | 7:-89666058 | MsG0780041329.01.T01:intron |
| AAAGCCTATAATCTTCTCCA+TGG | 0.629889 | 7:-89666742 | MsG0780041329.01.T01:CDS |
| ATAGCATACCAACAAGGGAA+CGG | 0.636577 | 7:+89665883 | None:intergenic |
| CAAACAAATAGAGCACGTAA+CGG | 0.652171 | 7:-89666510 | MsG0780041329.01.T01:CDS |
| TGGAACAAAATATCTGATGG+AGG | 0.653416 | 7:-89666159 | MsG0780041329.01.T01:CDS |
| CGTTACATAGCAGATACAAG+AGG | 0.656248 | 7:-89666477 | MsG0780041329.01.T01:CDS |
| TAGATCATAGCATACCAACA+AGG | 0.657639 | 7:+89665877 | None:intergenic |
| TGATCTCAGCAGGACCACCA+TGG | 0.686062 | 7:+89666286 | None:intergenic |
| TATAACCAGCTACTACGACA+AGG | 0.732009 | 7:+89666640 | None:intergenic |
| CAACACGACTTACCAAATCG+CGG | 0.735507 | 7:+89665916 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCTATTAAATTTATAAGATC+AGG | - | Chr7:89666862-89666881 | MsG0780041329.01.T01:intron | 20.0% |
| !! | CCTGATCTTATAAATTTAAT+AGG | + | Chr7:89666865-89666884 | None:intergenic | 20.0% |
| !!! | GACATGTTTATTTTTTACAA+TGG | - | Chr7:89665814-89665833 | MsG0780041329.01.T01:intron | 20.0% |
| !!! | TGAATTTTTCCAAAAAAGTA+AGG | - | Chr7:89666490-89666509 | MsG0780041329.01.T01:CDS | 20.0% |
| ! | AAATAAACATGTCAAGATCT+CGG | + | Chr7:89665807-89665826 | None:intergenic | 25.0% |
| ! | AATAATTAAACAGGTACACA+TGG | - | Chr7:89666628-89666647 | MsG0780041329.01.T01:CDS | 25.0% |
| ! | AATATGTTTCCAAACTTGAA+AGG | - | Chr7:89666703-89666722 | MsG0780041329.01.T01:CDS | 25.0% |
| ! | AATTTATCTTTGTCTCTATG+TGG | - | Chr7:89665897-89665916 | MsG0780041329.01.T01:CDS | 25.0% |
| ! | AGTTAAAAACATAACTGGTT+TGG | - | Chr7:89665980-89665999 | MsG0780041329.01.T01:CDS | 25.0% |
| ! | ATGAAGCAGTATAATTTGAA+TGG | - | Chr7:89666131-89666150 | MsG0780041329.01.T01:intron | 25.0% |
| ! | TGCTAAGCAAATAATTAAAC+AGG | - | Chr7:89666619-89666638 | MsG0780041329.01.T01:CDS | 25.0% |
| !! | ATTTTTCCAAAAAAGTAAGG+AGG | - | Chr7:89666493-89666512 | MsG0780041329.01.T01:CDS | 25.0% |
| !! | GTCTTCAAAGAATTTTTGAA+AGG | - | Chr7:89666549-89666568 | MsG0780041329.01.T01:CDS | 25.0% |
| !! | TTTTGTGTGTCAAATTTTTC+AGG | - | Chr7:89666915-89666934 | MsG0780041329.01.T01:CDS | 25.0% |
| !!! | TCAAAGAATTTTTGAAAGGT+AGG | - | Chr7:89666553-89666572 | MsG0780041329.01.T01:CDS | 25.0% |
| AAAATCATGTCACATTTGTC+AGG | - | Chr7:89665850-89665869 | MsG0780041329.01.T01:intron | 30.0% | |
| AATGAATAATGATGCTTGAG+TGG | + | Chr7:89666281-89666300 | None:intergenic | 30.0% | |
| ATAATTTGAATGGCGAGTTT+CGG | - | Chr7:89666141-89666160 | MsG0780041329.01.T01:CDS | 30.0% | |
| CATTGGAACAAAATATCTGA+TGG | - | Chr7:89666524-89666543 | MsG0780041329.01.T01:CDS | 30.0% | |
| GACAGAGTTAAAAACATAAC+TGG | - | Chr7:89665975-89665994 | MsG0780041329.01.T01:CDS | 30.0% | |
| GATGAGTAACAAGTTTAAAG+TGG | + | Chr7:89665753-89665772 | None:intergenic | 30.0% | |
| GTCAATTAAACAGTAAAGAG+TGG | + | Chr7:89666259-89666278 | None:intergenic | 30.0% | |
| TGTGATGTTAAATAAGGTGT+TGG | + | Chr7:89665784-89665803 | None:intergenic | 30.0% | |
| ! | CATCAGATATTTTGTTCCAA+TGG | + | Chr7:89666526-89666545 | None:intergenic | 30.0% |
| ! | GATATTTTGTTCCAATGGTT+TGG | + | Chr7:89666521-89666540 | None:intergenic | 30.0% |
| ! | TTTGAAAGGTAGGTGATTTT+TGG | - | Chr7:89666563-89666582 | MsG0780041329.01.T01:CDS | 30.0% |
| AAACAAATAGAGCACGTAAC+GGG | - | Chr7:89666177-89666196 | MsG0780041329.01.T01:CDS | 35.0% | |
| AAAGCCTATAATCTTCTCCA+TGG | - | Chr7:89665944-89665963 | MsG0780041329.01.T01:CDS | 35.0% | |
| AAATTCTGTTCCACTAGCAA+CGG | - | Chr7:89666939-89666958 | MsG0780041329.01.T01:CDS | 35.0% | |
| AGATCATAGCATACCAACAA+GGG | + | Chr7:89666811-89666830 | None:intergenic | 35.0% | |
| ATGCTAAGAACAGCAAATTG+AGG | - | Chr7:89666012-89666031 | MsG0780041329.01.T01:CDS | 35.0% | |
| CAAACAAATAGAGCACGTAA+CGG | - | Chr7:89666176-89666195 | MsG0780041329.01.T01:CDS | 35.0% | |
| CATGGAAGATCTATTCTGAA+AGG | - | Chr7:89666646-89666665 | MsG0780041329.01.T01:CDS | 35.0% | |
| TAGATCATAGCATACCAACA+AGG | + | Chr7:89666812-89666831 | None:intergenic | 35.0% | |
| TGCTAAGAACAGCAAATTGA+GGG | - | Chr7:89666013-89666032 | MsG0780041329.01.T01:CDS | 35.0% | |
| TGGAACAAAATATCTGATGG+AGG | - | Chr7:89666527-89666546 | MsG0780041329.01.T01:CDS | 35.0% | |
| ! | AGAAGATTATAGGCTTTGAC+CGG | + | Chr7:89665941-89665960 | None:intergenic | 35.0% |
| ! | CTATGAAGCTTTTGGACTTA+CGG | - | Chr7:89666334-89666353 | MsG0780041329.01.T01:CDS | 35.0% |
| ! | TCTCGGTGTGATGTTAAATA+AGG | + | Chr7:89665790-89665809 | None:intergenic | 35.0% |
| !! | AAATAAGGTGTTGGTACTGA+AGG | + | Chr7:89665775-89665794 | None:intergenic | 35.0% |
| !! | TAATAGCTCTGAAGCTTTGT+CGG | + | Chr7:89666468-89666487 | None:intergenic | 35.0% |
| !!! | GCTTAGCATTTTTTGTCAAC+AGG | + | Chr7:89666607-89666626 | None:intergenic | 35.0% |
| !!! | TTGGATCCTCCTTACTTTTT+TGG | + | Chr7:89666502-89666521 | None:intergenic | 35.0% |
| AACAAATAGAGCACGTAACG+GGG | - | Chr7:89666178-89666197 | MsG0780041329.01.T01:CDS | 40.0% | |
| ATAGCATACCAACAAGGGAA+CGG | + | Chr7:89666806-89666825 | None:intergenic | 40.0% | |
| ATAGGCACAGAGCATATAGA+TGG | + | Chr7:89666847-89666866 | None:intergenic | 40.0% | |
| ATCATCGAGAATGGTGTATC+AGG | - | Chr7:89666419-89666438 | MsG0780041329.01.T01:intron | 40.0% | |
| ATTTACATCCGTTCCCTTGT+TGG | - | Chr7:89666795-89666814 | MsG0780041329.01.T01:CDS | 40.0% | |
| CATTCTTAAGTTCCGCGATT+TGG | - | Chr7:89666758-89666777 | MsG0780041329.01.T01:CDS | 40.0% | |
| CCAAAAGCTTCATAGAAAGC+AGG | + | Chr7:89666329-89666348 | None:intergenic | 40.0% | |
| CGTTACATAGCAGATACAAG+AGG | - | Chr7:89666209-89666228 | MsG0780041329.01.T01:CDS | 40.0% | |
| CTATAATCTTCTCCATGGCA+AGG | - | Chr7:89665949-89665968 | MsG0780041329.01.T01:CDS | 40.0% | |
| CTTGCCATGGAGAAGATTAT+AGG | + | Chr7:89665951-89665970 | None:intergenic | 40.0% | |
| TATAACCAGCTACTACGACA+AGG | + | Chr7:89666049-89666068 | None:intergenic | 40.0% | |
| TGCAATTTCTTCTCTGTCAC+TGG | + | Chr7:89666087-89666106 | None:intergenic | 40.0% | |
| ! | CCTGCTTTCTATGAAGCTTT+TGG | - | Chr7:89666326-89666345 | MsG0780041329.01.T01:CDS | 40.0% |
| ! | TTCTGAAAGGCTTATGACCT+TGG | - | Chr7:89666659-89666678 | MsG0780041329.01.T01:CDS | 40.0% |
| !! | AATAGCTCTGAAGCTTTGTC+GGG | + | Chr7:89666467-89666486 | None:intergenic | 40.0% |
| ATTTGAATGGCGAGTTTCGG+TGG | - | Chr7:89666144-89666163 | MsG0780041329.01.T01:CDS | 45.0% | |
| CAACACGACTTACCAAATCG+CGG | + | Chr7:89666773-89666792 | None:intergenic | 45.0% | |
| CATGGCAAGTGGCAAATGTA+GGG | + | Chr7:89666385-89666404 | None:intergenic | 45.0% | |
| GAAACTATAAACACCCGCCA+AGG | + | Chr7:89666679-89666698 | None:intergenic | 45.0% | |
| GAACAGCAAATTGAGGGAAC+TGG | - | Chr7:89666019-89666038 | MsG0780041329.01.T01:CDS | 45.0% | |
| GTAAGGAGGATCCAAACCAT+TGG | - | Chr7:89666507-89666526 | MsG0780041329.01.T01:CDS | 45.0% | |
| TCTTTGTCTCTATGTGGCAG+CGG | - | Chr7:89665903-89665922 | MsG0780041329.01.T01:CDS | 45.0% | |
| TGAAAGGCTTATGACCTTGG+CGG | - | Chr7:89666662-89666681 | MsG0780041329.01.T01:CDS | 45.0% | |
| ! | GAAGCTTTGTCGGGATGATA+AGG | + | Chr7:89666458-89666477 | None:intergenic | 45.0% |
| ! | TGGCGGGTGTTTATAGTTTC+TGG | - | Chr7:89666679-89666698 | MsG0780041329.01.T01:CDS | 45.0% |
| ! | TTTTGGACTTACGGTCGTAG+AGG | - | Chr7:89666343-89666362 | MsG0780041329.01.T01:CDS | 45.0% |
| !! | AGTTTCGCGCCTTTCAAGTT+TGG | + | Chr7:89666715-89666734 | None:intergenic | 45.0% |
| AAAGCAGGCTGCAGCAAGAA+AGG | + | Chr7:89666314-89666333 | None:intergenic | 50.0% | |
| AACTCTGTCAAGCCTTGCCA+TGG | + | Chr7:89665964-89665983 | None:intergenic | 50.0% | |
| CCATGGCAAGTGGCAAATGT+AGG | + | Chr7:89666386-89666405 | None:intergenic | 50.0% | |
| CCATTCTCGATGATCTCAGC+AGG | + | Chr7:89666413-89666432 | None:intergenic | 50.0% | |
| CCTGCTGAGATCATCGAGAA+TGG | - | Chr7:89666410-89666429 | MsG0780041329.01.T01:intron | 50.0% | |
| GAAAGGCTTATGACCTTGGC+GGG | - | Chr7:89666663-89666682 | MsG0780041329.01.T01:CDS | 50.0% | |
| GTCAACCTTGTCGTAGTAGC+TGG | - | Chr7:89666041-89666060 | MsG0780041329.01.T01:CDS | 50.0% | |
| TTTGCGTCATCCGTTGCTAG+TGG | + | Chr7:89666952-89666971 | None:intergenic | 50.0% | |
| ! | ACATTTGCCACTTGCCATGG+TGG | - | Chr7:89666386-89666405 | MsG0780041329.01.T01:intron | 50.0% |
| ! | CCTACATTTGCCACTTGCCA+TGG | - | Chr7:89666383-89666402 | MsG0780041329.01.T01:intron | 50.0% |
| ! | TCGTAGAGGCCATGACTTGT+GGG | - | Chr7:89666357-89666376 | MsG0780041329.01.T01:CDS | 50.0% |
| ! | TTGAAAGGCGCGAAACTCGA+CGG | - | Chr7:89666718-89666737 | MsG0780041329.01.T01:CDS | 50.0% |
| !! | TACAAGAGGCGCTTTCGTTC+AGG | - | Chr7:89666223-89666242 | MsG0780041329.01.T01:CDS | 50.0% |
| GTCGTAGAGGCCATGACTTG+TGG | - | Chr7:89666356-89666375 | MsG0780041329.01.T01:CDS | 55.0% | |
| TCTATGTGGCAGCGGTTCTC+TGG | - | Chr7:89665911-89665930 | MsG0780041329.01.T01:CDS | 55.0% | |
| TGATCTCAGCAGGACCACCA+TGG | + | Chr7:89666403-89666422 | None:intergenic | 55.0% | |
| TGTAGGGAGCCCACAAGTCA+TGG | + | Chr7:89666369-89666388 | None:intergenic | 55.0% | |
| AGCAGGACCACCATGGCAAG+TGG | + | Chr7:89666396-89666415 | None:intergenic | 60.0% | |
| GCAGCGGTTCTCTGGCAGAC+CGG | - | Chr7:89665919-89665938 | MsG0780041329.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 89665733 | 89666975 | 89665733 | ID=MsG0780041329.01;Name=MsG0780041329.01 |
| Chr7 | mRNA | 89665733 | 89666975 | 89665733 | ID=MsG0780041329.01.T01;Parent=MsG0780041329.01;Name=MsG0780041329.01.T01;_AED=0.50;_eAED=0.60;_QI=0|0.5|0.2|1|0.5|0.4|5|0|323 |
| Chr7 | exon | 89666890 | 89666975 | 89666890 | ID=MsG0780041329.01.T01:exon:15689;Parent=MsG0780041329.01.T01 |
| Chr7 | exon | 89666464 | 89666836 | 89666464 | ID=MsG0780041329.01.T01:exon:15688;Parent=MsG0780041329.01.T01 |
| Chr7 | exon | 89666138 | 89666382 | 89666138 | ID=MsG0780041329.01.T01:exon:15687;Parent=MsG0780041329.01.T01 |
| Chr7 | exon | 89665892 | 89666067 | 89665892 | ID=MsG0780041329.01.T01:exon:15686;Parent=MsG0780041329.01.T01 |
| Chr7 | exon | 89665733 | 89665824 | 89665733 | ID=MsG0780041329.01.T01:exon:15685;Parent=MsG0780041329.01.T01 |
| Chr7 | CDS | 89666890 | 89666975 | 89666890 | ID=MsG0780041329.01.T01:cds;Parent=MsG0780041329.01.T01 |
| Chr7 | CDS | 89666464 | 89666836 | 89666464 | ID=MsG0780041329.01.T01:cds;Parent=MsG0780041329.01.T01 |
| Chr7 | CDS | 89666138 | 89666382 | 89666138 | ID=MsG0780041329.01.T01:cds;Parent=MsG0780041329.01.T01 |
| Chr7 | CDS | 89665892 | 89666067 | 89665892 | ID=MsG0780041329.01.T01:cds;Parent=MsG0780041329.01.T01 |
| Chr7 | CDS | 89665733 | 89665824 | 89665733 | ID=MsG0780041329.01.T01:cds;Parent=MsG0780041329.01.T01 |
| Gene Sequence |
| Protein sequence |
