Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041972.01.T01 | XP_013443930.1 | 95.038 | 262 | 13 | 0 | 1 | 262 | 1 | 262 | 0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041972.01.T01 | Q9SE93 | 42.857 | 259 | 142 | 3 | 3 | 259 | 8 | 262 | 4.33E-64 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041972.01.T01 | A0A072TWQ1 | 95.038 | 262 | 13 | 0 | 1 | 262 | 1 | 262 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0080048387.01 | MsG0880041972.01 | PPI |
| MsG0880041972.01 | MsG0880045796.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041972.01.T01 | MTR_8g007670 | 95.038 | 262 | 13 | 0 | 1 | 262 | 1 | 262 | 0.0 | 526 |
| MsG0880041972.01.T01 | MTR_8g007670 | 80.916 | 262 | 6 | 1 | 1 | 262 | 1 | 218 | 8.14e-153 | 425 |
| MsG0880041972.01.T01 | MTR_8g007675 | 64.062 | 256 | 91 | 1 | 7 | 262 | 32 | 286 | 3.09e-120 | 345 |
| MsG0880041972.01.T01 | MTR_8g008660 | 58.755 | 257 | 102 | 2 | 6 | 262 | 26 | 278 | 5.88e-107 | 311 |
| MsG0880041972.01.T01 | MTR_8g008505 | 57.588 | 257 | 107 | 2 | 6 | 262 | 27 | 281 | 2.32e-104 | 304 |
| MsG0880041972.01.T01 | MTR_3g464040 | 56.420 | 257 | 108 | 2 | 6 | 262 | 18 | 270 | 5.29e-103 | 300 |
| MsG0880041972.01.T01 | MTR_8g008500 | 56.923 | 260 | 108 | 3 | 6 | 262 | 26 | 284 | 5.97e-103 | 301 |
| MsG0880041972.01.T01 | MTR_5g018300 | 49.807 | 259 | 127 | 3 | 5 | 262 | 6 | 262 | 1.68e-84 | 253 |
| MsG0880041972.01.T01 | MTR_5g018320 | 49.027 | 257 | 128 | 3 | 7 | 262 | 5 | 259 | 8.53e-84 | 251 |
| MsG0880041972.01.T01 | MTR_5g018280 | 46.183 | 262 | 131 | 4 | 5 | 262 | 6 | 261 | 2.95e-76 | 232 |
| MsG0880041972.01.T01 | MTR_8g079120 | 40.927 | 259 | 143 | 5 | 6 | 262 | 10 | 260 | 9.03e-60 | 190 |
| MsG0880041972.01.T01 | MTR_5g018350 | 39.623 | 265 | 148 | 4 | 1 | 262 | 1 | 256 | 1.03e-57 | 185 |
| MsG0880041972.01.T01 | MTR_5g018365 | 38.868 | 265 | 150 | 6 | 1 | 262 | 6 | 261 | 1.93e-57 | 184 |
| MsG0880041972.01.T01 | MTR_3g005410 | 35.385 | 260 | 152 | 6 | 6 | 259 | 93 | 342 | 5.39e-42 | 147 |
| MsG0880041972.01.T01 | MTR_8g079120 | 43.713 | 167 | 88 | 3 | 5 | 169 | 51 | 213 | 3.12e-40 | 139 |
| MsG0880041972.01.T01 | MTR_7g015220 | 34.241 | 257 | 162 | 4 | 4 | 259 | 121 | 371 | 5.13e-40 | 142 |
| MsG0880041972.01.T01 | MTR_5g068100 | 33.065 | 248 | 153 | 5 | 5 | 248 | 28 | 266 | 2.04e-38 | 136 |
| MsG0880041972.01.T01 | MTR_3g093730 | 31.707 | 246 | 160 | 4 | 4 | 248 | 33 | 271 | 7.25e-36 | 129 |
| MsG0880041972.01.T01 | MTR_3g093730 | 29.388 | 245 | 122 | 6 | 4 | 248 | 33 | 226 | 1.57e-29 | 112 |
| MsG0880041972.01.T01 | MTR_5g008130 | 43.038 | 79 | 45 | 0 | 184 | 262 | 2 | 80 | 3.01e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041972.01.T01 | AT2G23600 | 39.925 | 268 | 143 | 7 | 3 | 262 | 5 | 262 | 4.46e-62 | 196 |
| MsG0880041972.01.T01 | AT2G23600 | 39.925 | 268 | 143 | 7 | 3 | 262 | 20 | 277 | 6.82e-62 | 196 |
| MsG0880041972.01.T01 | AT2G23610 | 39.544 | 263 | 151 | 5 | 3 | 262 | 5 | 262 | 2.16e-60 | 192 |
| MsG0880041972.01.T01 | AT2G23590 | 38.550 | 262 | 148 | 7 | 1 | 262 | 23 | 271 | 5.16e-60 | 191 |
| MsG0880041972.01.T01 | AT3G50440 | 38.132 | 257 | 153 | 3 | 8 | 262 | 22 | 274 | 3.36e-59 | 189 |
| MsG0880041972.01.T01 | AT2G23620 | 39.179 | 268 | 145 | 8 | 3 | 262 | 5 | 262 | 3.92e-59 | 189 |
| MsG0880041972.01.T01 | AT4G37150 | 35.135 | 259 | 161 | 4 | 6 | 262 | 2 | 255 | 3.19e-52 | 171 |
| MsG0880041972.01.T01 | AT2G23550 | 37.121 | 264 | 157 | 5 | 3 | 262 | 4 | 262 | 4.40e-52 | 171 |
| MsG0880041972.01.T01 | AT2G23550 | 37.121 | 264 | 157 | 5 | 3 | 262 | 11 | 269 | 6.02e-52 | 171 |
| MsG0880041972.01.T01 | AT2G23580 | 38.258 | 264 | 152 | 7 | 4 | 262 | 5 | 262 | 1.69e-51 | 169 |
| MsG0880041972.01.T01 | AT5G10300 | 36.782 | 261 | 159 | 4 | 3 | 262 | 2 | 257 | 3.80e-50 | 166 |
| MsG0880041972.01.T01 | AT2G23560 | 35.385 | 260 | 162 | 5 | 4 | 262 | 5 | 259 | 2.23e-48 | 161 |
| MsG0880041972.01.T01 | AT2G23610 | 33.333 | 261 | 125 | 5 | 3 | 262 | 5 | 217 | 3.93e-47 | 156 |
| MsG0880041972.01.T01 | AT1G33990 | 35.000 | 260 | 153 | 6 | 6 | 259 | 96 | 345 | 9.84e-45 | 154 |
| MsG0880041972.01.T01 | AT3G29770 | 36.576 | 257 | 156 | 4 | 4 | 259 | 135 | 385 | 3.40e-43 | 151 |
| MsG0880041972.01.T01 | AT5G58310 | 32.319 | 263 | 163 | 4 | 5 | 259 | 3 | 258 | 8.55e-43 | 147 |
| MsG0880041972.01.T01 | AT2G23600 | 42.353 | 170 | 84 | 5 | 3 | 164 | 20 | 183 | 4.21e-42 | 142 |
| MsG0880041972.01.T01 | AT4G09900 | 34.601 | 263 | 150 | 7 | 6 | 259 | 97 | 346 | 5.72e-42 | 147 |
| MsG0880041972.01.T01 | AT2G23550 | 33.460 | 263 | 139 | 5 | 3 | 262 | 4 | 233 | 1.51e-38 | 135 |
| MsG0880041972.01.T01 | AT1G26360 | 34.231 | 260 | 158 | 5 | 4 | 259 | 186 | 436 | 7.78e-37 | 135 |
| MsG0880041972.01.T01 | AT4G37140 | 45.161 | 124 | 66 | 1 | 6 | 129 | 2 | 123 | 1.14e-36 | 127 |
| MsG0880041972.01.T01 | AT4G16690 | 33.333 | 252 | 159 | 4 | 7 | 257 | 12 | 255 | 3.02e-36 | 130 |
| MsG0880041972.01.T01 | AT1G69240 | 31.660 | 259 | 168 | 5 | 4 | 259 | 184 | 436 | 5.13e-36 | 133 |
| MsG0880041972.01.T01 | AT3G10870 | 31.174 | 247 | 166 | 4 | 3 | 248 | 16 | 259 | 2.75e-35 | 127 |
| MsG0880041972.01.T01 | AT2G23550 | 39.881 | 168 | 96 | 3 | 3 | 166 | 11 | 177 | 7.18e-34 | 122 |
| MsG0880041972.01.T01 | AT2G23580 | 39.881 | 168 | 94 | 5 | 4 | 166 | 5 | 170 | 6.81e-33 | 119 |
| MsG0880041972.01.T01 | AT4G37140 | 49.451 | 91 | 46 | 0 | 6 | 96 | 2 | 92 | 8.78e-32 | 113 |
| MsG0880041972.01.T01 | AT5G10300 | 48.571 | 105 | 54 | 0 | 3 | 107 | 2 | 106 | 9.82e-32 | 116 |
| MsG0880041972.01.T01 | AT3G29770 | 48.684 | 76 | 39 | 0 | 4 | 79 | 135 | 210 | 1.74e-19 | 85.9 |
| MsG0880041972.01.T01 | AT2G23570 | 32.979 | 188 | 108 | 8 | 83 | 262 | 1 | 178 | 1.51e-18 | 81.3 |
Find 43 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACCTTTGATGACATTTA+TGG | 0.116749 | 8:-2007967 | MsG0880041972.01.T01:CDS |
| TAAATCAGCATCGCTCAAAA+AGG | 0.293463 | 8:+2006723 | None:intergenic |
| TGAACTTCTTGCATCTGCTT+TGG | 0.342274 | 8:+2008008 | None:intergenic |
| AAGCACTTTGTGTTGATTCA+TGG | 0.366129 | 8:-2008131 | MsG0880041972.01.T01:CDS |
| CTTGTTGGTCATAGTCTTGG+AGG | 0.421057 | 8:-2007915 | MsG0880041972.01.T01:CDS |
| TTTGACACTTGCTTTATCTC+TGG | 0.424297 | 8:-2006761 | MsG0880041972.01.T01:CDS |
| ATTCTTGTTGGTCATAGTCT+TGG | 0.431258 | 8:-2007918 | MsG0880041972.01.T01:CDS |
| TTACCTGAGATGGTGATAAC+TGG | 0.434164 | 8:+2006907 | None:intergenic |
| GAGGAGAAAGTAATTCTTGT+TGG | 0.449534 | 8:-2007930 | MsG0880041972.01.T01:CDS |
| TGGTGATAACTGGTACATTC+TGG | 0.466524 | 8:+2006917 | None:intergenic |
| GACAAAATTTCATCATTGAC+GGG | 0.468240 | 8:-2006989 | MsG0880041972.01.T01:CDS |
| AGTACCTCTTGAAGAAAAGC+TGG | 0.468571 | 8:+2007798 | None:intergenic |
| AAGAATTACTTTCTCCTCAC+AGG | 0.471360 | 8:+2007935 | None:intergenic |
| GAGAAGAATAGGCTCAGCTT+TGG | 0.471989 | 8:-2007015 | MsG0880041972.01.T01:CDS |
| GATCGAGGGTTCAGATCATA+TGG | 0.477216 | 8:-2006557 | MsG0880041972.01.T01:CDS |
| ATGTAGCGAAGGAGAAGAAT+AGG | 0.490240 | 8:-2007026 | MsG0880041972.01.T01:intron |
| GTTGTCTGTGTCTATTGCTA+TGG | 0.493669 | 8:-2007892 | MsG0880041972.01.T01:CDS |
| AGACAAAATTTCATCATTGA+CGG | 0.494233 | 8:-2006990 | MsG0880041972.01.T01:CDS |
| GAGAGGATTGGAGCTATGTC+TGG | 0.496206 | 8:+2006966 | None:intergenic |
| TTGATTCATGGAGGCATCCA+TGG | 0.503684 | 8:-2008119 | MsG0880041972.01.T01:CDS |
| TAAATGTCATCAAAGGTTGA+TGG | 0.511909 | 8:+2007970 | None:intergenic |
| GAGTGGATAATTGAGACAAC+CGG | 0.517534 | 8:-2006601 | MsG0880041972.01.T01:CDS |
| GTACCAGTTATCACCATCTC+AGG | 0.520634 | 8:-2006910 | MsG0880041972.01.T01:intron |
| AGTCCGTCAGACGAGAGGAT+TGG | 0.527944 | 8:+2006954 | None:intergenic |
| GCAACTGAACTAAAATCAGC+TGG | 0.536127 | 8:-2008074 | MsG0880041972.01.T01:CDS |
| TTGTTGGTCATAGTCTTGGA+GGG | 0.537347 | 8:-2007914 | MsG0880041972.01.T01:CDS |
| GCATCCATGGTGCATGGTGT+TGG | 0.551656 | 8:-2008106 | MsG0880041972.01.T01:CDS |
| TTTCACTTTAGCATATGGAC+CGG | 0.551824 | 8:+2006582 | None:intergenic |
| GACTCCATAAATGTCATCAA+AGG | 0.577498 | 8:+2007963 | None:intergenic |
| CACTTTGTGTTGATTCATGG+AGG | 0.589315 | 8:-2008128 | MsG0880041972.01.T01:CDS |
| GCTCCAATCCTCTCGTCTGA+CGG | 0.596048 | 8:-2006957 | MsG0880041972.01.T01:CDS |
| TGCTAAAGTGAAAATGATCG+AGG | 0.599047 | 8:-2006572 | MsG0880041972.01.T01:CDS |
| ACTGTTACAAATGAAAACAA+TGG | 0.604853 | 8:-2006685 | MsG0880041972.01.T01:CDS |
| AATCGAGTCCGTCAGACGAG+AGG | 0.609179 | 8:+2006949 | None:intergenic |
| AGAATTACTTTCTCCTCACA+GGG | 0.612304 | 8:+2007936 | None:intergenic |
| TAAAGTCACAGCACTAGACA+TGG | 0.625449 | 8:-2008048 | MsG0880041972.01.T01:CDS |
| GAAGAAAAGCTGGATAAGTG+AGG | 0.629638 | 8:+2007808 | None:intergenic |
| GCTAAAGTGAAAATGATCGA+GGG | 0.635853 | 8:-2006571 | MsG0880041972.01.T01:CDS |
| TATACCAACACCATGCACCA+TGG | 0.635877 | 8:+2008102 | None:intergenic |
| TACAAATGAAAACAATGGAA+TGG | 0.636369 | 8:-2006680 | MsG0880041972.01.T01:CDS |
| GCACTAGACATGGCTGCTTG+TGG | 0.636797 | 8:-2008038 | MsG0880041972.01.T01:CDS |
| TATGGAGTCACTTCCCTGTG+AGG | 0.645013 | 8:-2007949 | MsG0880041972.01.T01:CDS |
| ATGGAGGCATCCATGGTGCA+TGG | 0.656739 | 8:-2008112 | MsG0880041972.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAATAAAATAAATAG+TGG | - | Chr8:2007330-2007349 | MsG0880041972.01.T01:intron | 10.0% |
| !!! | GATATTTAAGATTTTAAAAT+GGG | - | Chr8:2007211-2007230 | MsG0880041972.01.T01:intron | 10.0% |
| !!! | TGATATTTAAGATTTTAAAA+TGG | - | Chr8:2007210-2007229 | MsG0880041972.01.T01:intron | 10.0% |
| !! | AAAATATTGAAATTATTTGG+AGG | - | Chr8:2007397-2007416 | MsG0880041972.01.T01:intron | 15.0% |
| !! | AAATATTGAAATTATTTGGA+GGG | - | Chr8:2007398-2007417 | MsG0880041972.01.T01:intron | 15.0% |
| !! | ATTTGTAAGGAAAAAAAATT+AGG | - | Chr8:2006962-2006981 | MsG0880041972.01.T01:CDS | 15.0% |
| !! | GAGAAAATATTGAAATTATT+TGG | - | Chr8:2007394-2007413 | MsG0880041972.01.T01:intron | 15.0% |
| !! | TCAAAATACATAATATGAAT+TGG | + | Chr8:2007770-2007789 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTCCTTACAAA+TGG | + | Chr8:2006963-2006982 | None:intergenic | 15.0% |
| !!! | TTAAATATCATAATTTTCGA+AGG | + | Chr8:2007200-2007219 | None:intergenic | 15.0% |
| !! | AAAAATATTCATCAAATCAC+GGG | + | Chr8:2007583-2007602 | None:intergenic | 20.0% |
| !! | AGATTAGACAATTTATATTC+TGG | + | Chr8:2007109-2007128 | None:intergenic | 20.0% |
| !! | CAAAAATATTCATCAAATCA+CGG | + | Chr8:2007584-2007603 | None:intergenic | 20.0% |
| !! | TACAAAAGTTGACATATAAA+CGG | + | Chr8:2007065-2007084 | None:intergenic | 20.0% |
| !! | TTGAAAAATAAGAATGATTG+AGG | - | Chr8:2007299-2007318 | MsG0880041972.01.T01:intron | 20.0% |
| !!! | TATATTCTGGCATTATATTT+TGG | + | Chr8:2007096-2007115 | None:intergenic | 20.0% |
| !!! | TTCAATATTTTCTCAAACTA+TGG | + | Chr8:2007388-2007407 | None:intergenic | 20.0% |
| ! | ACTGTTACAAATGAAAACAA+TGG | - | Chr8:2007956-2007975 | MsG0880041972.01.T01:CDS | 25.0% |
| ! | AGACAAAATTTCATCATTGA+CGG | - | Chr8:2007651-2007670 | MsG0880041972.01.T01:intron | 25.0% |
| ! | TACAAATGAAAACAATGGAA+TGG | - | Chr8:2007961-2007980 | MsG0880041972.01.T01:CDS | 25.0% |
| !! | ATCATTTTCACTTTAGCATA+TGG | + | Chr8:2008067-2008086 | None:intergenic | 25.0% |
| !! | ATTTTTCTATTTACCTGAGA+TGG | + | Chr8:2007747-2007766 | None:intergenic | 25.0% |
| !! | CGTGATTTGATGAATATTTT+TGG | - | Chr8:2007582-2007601 | MsG0880041972.01.T01:intron | 25.0% |
| !! | TACACTTTTGTATCAAAACT+TGG | - | Chr8:2007038-2007057 | MsG0880041972.01.T01:intron | 25.0% |
| !!! | AAACAAAAGATTTTCAAGAG+TGG | - | Chr8:2008023-2008042 | MsG0880041972.01.T01:CDS | 25.0% |
| AATAGTGGTATGTATCTACT+AGG | - | Chr8:2007345-2007364 | MsG0880041972.01.T01:intron | 30.0% | |
| ACAGTTGTATGTGTGAATTT+AGG | - | Chr8:2007504-2007523 | MsG0880041972.01.T01:intron | 30.0% | |
| CAAATTCGATTTCTATATGC+AGG | - | Chr8:2007856-2007875 | MsG0880041972.01.T01:CDS | 30.0% | |
| CAGTTGTATGTGTGAATTTA+GGG | - | Chr8:2007505-2007524 | MsG0880041972.01.T01:intron | 30.0% | |
| CATAACTACGTAAATTCAGT+AGG | + | Chr8:2007013-2007032 | None:intergenic | 30.0% | |
| GACAAAATTTCATCATTGAC+GGG | - | Chr8:2007652-2007671 | MsG0880041972.01.T01:intron | 30.0% | |
| GCCAATCAAAATACTCATTA+GGG | - | Chr8:2006907-2006926 | MsG0880041972.01.T01:intron | 30.0% | |
| TAAATGTCATCAAAGGTTGA+TGG | + | Chr8:2006674-2006693 | None:intergenic | 30.0% | |
| TGCCAATCAAAATACTCATT+AGG | - | Chr8:2006906-2006925 | MsG0880041972.01.T01:intron | 30.0% | |
| ! | TAGACTAAACACTTCTAGTT+AGG | - | Chr8:2007464-2007483 | MsG0880041972.01.T01:intron | 30.0% |
| ! | TCAACCTTTGATGACATTTA+TGG | - | Chr8:2006674-2006693 | MsG0880041972.01.T01:CDS | 30.0% |
| ! | TCAGAGATGATGAAGATTTT+AGG | + | Chr8:2007989-2008008 | None:intergenic | 30.0% |
| ! | TTTCTCAAACTATGGACTAA+TGG | + | Chr8:2007380-2007399 | None:intergenic | 30.0% |
| !! | TGTTTTTATCACTTCGTCAA+AGG | - | Chr8:2007531-2007550 | MsG0880041972.01.T01:intron | 30.0% |
| !!! | TCCCTAATGAGTATTTTGAT+TGG | + | Chr8:2006911-2006930 | None:intergenic | 30.0% |
| !!! | TGATGAATATTTTTGGTGTG+CGG | - | Chr8:2007589-2007608 | MsG0880041972.01.T01:intron | 30.0% |
| AAATCAGCATCGCTCAAAAA+GGG | + | Chr8:2007920-2007939 | None:intergenic | 35.0% | |
| AAGAATTACTTTCTCCTCAC+AGG | + | Chr8:2006709-2006728 | None:intergenic | 35.0% | |
| AGAATTACTTTCTCCTCACA+GGG | + | Chr8:2006708-2006727 | None:intergenic | 35.0% | |
| ATTCTTGTTGGTCATAGTCT+TGG | - | Chr8:2006723-2006742 | MsG0880041972.01.T01:CDS | 35.0% | |
| CCTTACAAATGGAAAGTCAA+TGG | + | Chr8:2006952-2006971 | None:intergenic | 35.0% | |
| GACTCCATAAATGTCATCAA+AGG | + | Chr8:2006681-2006700 | None:intergenic | 35.0% | |
| GAGGAGAAAGTAATTCTTGT+TGG | - | Chr8:2006711-2006730 | MsG0880041972.01.T01:CDS | 35.0% | |
| GCTAAAGTGAAAATGATCGA+GGG | - | Chr8:2008070-2008089 | MsG0880041972.01.T01:CDS | 35.0% | |
| TAAATCAGCATCGCTCAAAA+AGG | + | Chr8:2007921-2007940 | None:intergenic | 35.0% | |
| TGCTAAAGTGAAAATGATCG+AGG | - | Chr8:2008069-2008088 | MsG0880041972.01.T01:CDS | 35.0% | |
| TTGTATGTGTGAATTTAGGG+TGG | - | Chr8:2007508-2007527 | MsG0880041972.01.T01:intron | 35.0% | |
| TTTCACTTTAGCATATGGAC+CGG | + | Chr8:2008062-2008081 | None:intergenic | 35.0% | |
| TTTGACACTTGCTTTATCTC+TGG | - | Chr8:2007880-2007899 | MsG0880041972.01.T01:CDS | 35.0% | |
| ! | ACTGCAACAAAGATTTTGTG+AGG | + | Chr8:2006783-2006802 | None:intergenic | 35.0% |
| ! | CTGCAACAAAGATTTTGTGA+GGG | + | Chr8:2006782-2006801 | None:intergenic | 35.0% |
| ! | TTATCCAGCTTTTCTTCAAG+AGG | - | Chr8:2006839-2006858 | MsG0880041972.01.T01:intron | 35.0% |
| !! | AAGCACTTTGTGTTGATTCA+TGG | - | Chr8:2006510-2006529 | MsG0880041972.01.T01:CDS | 35.0% |
| !! | CCATTGACTTTCCATTTGTA+AGG | - | Chr8:2006949-2006968 | MsG0880041972.01.T01:CDS | 35.0% |
| !!! | AGAGCTTAGTTTTGTAGGTT+TGG | + | Chr8:2008119-2008138 | None:intergenic | 35.0% |
| !!! | AGTTCAGAGCTTAGTTTTGT+AGG | + | Chr8:2008124-2008143 | None:intergenic | 35.0% |
| AGTACCTCTTGAAGAAAAGC+TGG | + | Chr8:2006846-2006865 | None:intergenic | 40.0% | |
| ATGTAGCGAAGGAGAAGAAT+AGG | - | Chr8:2007615-2007634 | MsG0880041972.01.T01:intron | 40.0% | |
| GAAGAAAAGCTGGATAAGTG+AGG | + | Chr8:2006836-2006855 | None:intergenic | 40.0% | |
| GAGTGGATAATTGAGACAAC+CGG | - | Chr8:2008040-2008059 | MsG0880041972.01.T01:CDS | 40.0% | |
| GCAACTGAACTAAAATCAGC+TGG | - | Chr8:2006567-2006586 | MsG0880041972.01.T01:CDS | 40.0% | |
| GTTGTCTGTGTCTATTGCTA+TGG | - | Chr8:2006749-2006768 | MsG0880041972.01.T01:CDS | 40.0% | |
| TAAAGTCACAGCACTAGACA+TGG | - | Chr8:2006593-2006612 | MsG0880041972.01.T01:CDS | 40.0% | |
| TGAACTTCTTGCATCTGCTT+TGG | + | Chr8:2006636-2006655 | None:intergenic | 40.0% | |
| TGGTGATAACTGGTACATTC+TGG | + | Chr8:2007727-2007746 | None:intergenic | 40.0% | |
| TTACCTGAGATGGTGATAAC+TGG | + | Chr8:2007737-2007756 | None:intergenic | 40.0% | |
| ! | TTGTTGGTCATAGTCTTGGA+GGG | - | Chr8:2006727-2006746 | MsG0880041972.01.T01:CDS | 40.0% |
| !! | CACTTTGTGTTGATTCATGG+AGG | - | Chr8:2006513-2006532 | MsG0880041972.01.T01:CDS | 40.0% |
| GAGAAGAATAGGCTCAGCTT+TGG | - | Chr8:2007626-2007645 | MsG0880041972.01.T01:intron | 45.0% | |
| GATCGAGGGTTCAGATCATA+TGG | - | Chr8:2008084-2008103 | MsG0880041972.01.T01:CDS | 45.0% | |
| GTACCAGTTATCACCATCTC+AGG | - | Chr8:2007731-2007750 | MsG0880041972.01.T01:intron | 45.0% | |
| TATACCAACACCATGCACCA+TGG | + | Chr8:2006542-2006561 | None:intergenic | 45.0% | |
| TCGCTCAAAAAGGGAGGTAA+TGG | + | Chr8:2007911-2007930 | None:intergenic | 45.0% | |
| ! | CTTGTTGGTCATAGTCTTGG+AGG | - | Chr8:2006726-2006745 | MsG0880041972.01.T01:CDS | 45.0% |
| !! | TTGATTCATGGAGGCATCCA+TGG | - | Chr8:2006522-2006541 | MsG0880041972.01.T01:CDS | 45.0% |
| GAGAGGATTGGAGCTATGTC+TGG | + | Chr8:2007678-2007697 | None:intergenic | 50.0% | |
| TATGGAGTCACTTCCCTGTG+AGG | - | Chr8:2006692-2006711 | MsG0880041972.01.T01:CDS | 50.0% | |
| TCAGCATCGCTCAAAAAGGG+AGG | + | Chr8:2007917-2007936 | None:intergenic | 50.0% | |
| AATCGAGTCCGTCAGACGAG+AGG | + | Chr8:2007695-2007714 | None:intergenic | 55.0% | |
| AGTCCGTCAGACGAGAGGAT+TGG | + | Chr8:2007690-2007709 | None:intergenic | 55.0% | |
| GCACTAGACATGGCTGCTTG+TGG | - | Chr8:2006603-2006622 | MsG0880041972.01.T01:CDS | 55.0% | |
| GCATCCATGGTGCATGGTGT+TGG | - | Chr8:2006535-2006554 | MsG0880041972.01.T01:CDS | 55.0% | |
| GCTCCAATCCTCTCGTCTGA+CGG | - | Chr8:2007684-2007703 | MsG0880041972.01.T01:intron | 55.0% | |
| GTGTGCGGAACATGTAGCGA+AGG | - | Chr8:2007604-2007623 | MsG0880041972.01.T01:intron | 55.0% | |
| !! | ATGGAGGCATCCATGGTGCA+TGG | - | Chr8:2006529-2006548 | MsG0880041972.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 2006495 | 2008168 | 2006495 | ID=MsG0880041972.01;Name=MsG0880041972.01 |
| Chr8 | mRNA | 2006495 | 2008168 | 2006495 | ID=MsG0880041972.01.T01;Parent=MsG0880041972.01;Name=MsG0880041972.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|262 |
| Chr8 | exon | 2007803 | 2008168 | 2007803 | ID=MsG0880041972.01.T01:exon:1245;Parent=MsG0880041972.01.T01 |
| Chr8 | exon | 2006911 | 2007042 | 2006911 | ID=MsG0880041972.01.T01:exon:1244;Parent=MsG0880041972.01.T01 |
| Chr8 | exon | 2006495 | 2006785 | 2006495 | ID=MsG0880041972.01.T01:exon:1243;Parent=MsG0880041972.01.T01 |
| Chr8 | CDS | 2007803 | 2008168 | 2007803 | ID=MsG0880041972.01.T01:cds;Parent=MsG0880041972.01.T01 |
| Chr8 | CDS | 2006911 | 2007042 | 2006911 | ID=MsG0880041972.01.T01:cds;Parent=MsG0880041972.01.T01 |
| Chr8 | CDS | 2006495 | 2006785 | 2006495 | ID=MsG0880041972.01.T01:cds;Parent=MsG0880041972.01.T01 |
| Gene Sequence |
| Protein sequence |
