Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041980.01.T01 | XP_003626748.1 | 92.446 | 278 | 21 | 0 | 1 | 278 | 1 | 278 | 0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041980.01.T01 | Q8S9K8 | 41.797 | 256 | 141 | 3 | 28 | 278 | 22 | 274 | 1.93E-64 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041980.01.T01 | G7LCH3 | 92.446 | 278 | 21 | 0 | 1 | 278 | 1 | 278 | 0.0 | 529 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880041980.01 | MsG0880045796.01 | PPI |
| MsG0880041980.01 | MsG0080048387.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041980.01.T01 | MTR_8g008660 | 92.446 | 278 | 21 | 0 | 1 | 278 | 1 | 278 | 0.0 | 529 |
| MsG0880041980.01.T01 | MTR_3g464040 | 83.333 | 270 | 45 | 0 | 9 | 278 | 1 | 270 | 1.42e-165 | 459 |
| MsG0880041980.01.T01 | MTR_8g008505 | 78.648 | 281 | 57 | 2 | 1 | 278 | 1 | 281 | 1.14e-159 | 445 |
| MsG0880041980.01.T01 | MTR_8g008500 | 78.169 | 284 | 56 | 2 | 1 | 278 | 1 | 284 | 2.42e-159 | 444 |
| MsG0880041980.01.T01 | MTR_8g007675 | 69.020 | 255 | 76 | 1 | 27 | 278 | 32 | 286 | 8.02e-126 | 360 |
| MsG0880041980.01.T01 | MTR_8g007670 | 59.922 | 257 | 99 | 2 | 26 | 278 | 6 | 262 | 1.05e-110 | 320 |
| MsG0880041980.01.T01 | MTR_8g007670 | 54.724 | 254 | 73 | 2 | 26 | 278 | 6 | 218 | 3.87e-94 | 277 |
| MsG0880041980.01.T01 | MTR_5g018300 | 49.416 | 257 | 125 | 3 | 26 | 278 | 7 | 262 | 9.67e-90 | 267 |
| MsG0880041980.01.T01 | MTR_5g018320 | 50.193 | 259 | 124 | 3 | 24 | 278 | 2 | 259 | 1.11e-89 | 267 |
| MsG0880041980.01.T01 | MTR_5g018280 | 49.805 | 257 | 123 | 4 | 26 | 278 | 7 | 261 | 1.87e-87 | 261 |
| MsG0880041980.01.T01 | MTR_5g018365 | 41.016 | 256 | 143 | 4 | 26 | 278 | 11 | 261 | 2.23e-58 | 187 |
| MsG0880041980.01.T01 | MTR_8g079120 | 39.689 | 257 | 145 | 5 | 26 | 278 | 10 | 260 | 4.09e-56 | 181 |
| MsG0880041980.01.T01 | MTR_5g018350 | 37.743 | 257 | 148 | 5 | 27 | 278 | 7 | 256 | 1.61e-51 | 169 |
| MsG0880041980.01.T01 | MTR_5g068100 | 36.214 | 243 | 146 | 3 | 26 | 264 | 29 | 266 | 2.70e-47 | 159 |
| MsG0880041980.01.T01 | MTR_7g015220 | 36.759 | 253 | 151 | 4 | 27 | 275 | 124 | 371 | 8.91e-46 | 158 |
| MsG0880041980.01.T01 | MTR_3g093730 | 35.391 | 243 | 147 | 3 | 26 | 264 | 35 | 271 | 1.78e-45 | 155 |
| MsG0880041980.01.T01 | MTR_3g005410 | 32.692 | 260 | 157 | 5 | 26 | 276 | 93 | 343 | 7.15e-42 | 147 |
| MsG0880041980.01.T01 | MTR_8g079120 | 43.030 | 165 | 87 | 3 | 26 | 186 | 52 | 213 | 2.70e-38 | 134 |
| MsG0880041980.01.T01 | MTR_3g093730 | 30.544 | 239 | 119 | 4 | 26 | 264 | 35 | 226 | 2.83e-31 | 117 |
| MsG0880041980.01.T01 | MTR_5g008130 | 62.025 | 79 | 30 | 0 | 200 | 278 | 2 | 80 | 1.58e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041980.01.T01 | AT3G50440 | 41.797 | 256 | 141 | 3 | 28 | 278 | 22 | 274 | 1.97e-65 | 206 |
| MsG0880041980.01.T01 | AT2G23610 | 43.023 | 258 | 139 | 4 | 26 | 278 | 8 | 262 | 3.26e-65 | 205 |
| MsG0880041980.01.T01 | AT2G23600 | 43.629 | 259 | 136 | 6 | 26 | 278 | 8 | 262 | 6.18e-65 | 204 |
| MsG0880041980.01.T01 | AT2G23600 | 43.629 | 259 | 136 | 6 | 26 | 278 | 23 | 277 | 1.05e-64 | 204 |
| MsG0880041980.01.T01 | AT2G23620 | 43.629 | 259 | 136 | 5 | 26 | 278 | 8 | 262 | 2.02e-63 | 200 |
| MsG0880041980.01.T01 | AT2G23590 | 40.511 | 274 | 143 | 8 | 15 | 278 | 8 | 271 | 1.15e-61 | 196 |
| MsG0880041980.01.T01 | AT2G23580 | 41.445 | 263 | 141 | 7 | 24 | 278 | 5 | 262 | 1.67e-59 | 190 |
| MsG0880041980.01.T01 | AT4G37150 | 39.147 | 258 | 148 | 5 | 26 | 278 | 2 | 255 | 4.29e-55 | 179 |
| MsG0880041980.01.T01 | AT3G29770 | 40.551 | 254 | 142 | 4 | 27 | 276 | 138 | 386 | 1.28e-52 | 176 |
| MsG0880041980.01.T01 | AT2G23550 | 38.403 | 263 | 149 | 6 | 24 | 278 | 12 | 269 | 1.93e-52 | 172 |
| MsG0880041980.01.T01 | AT2G23550 | 38.403 | 263 | 149 | 6 | 24 | 278 | 5 | 262 | 2.62e-52 | 172 |
| MsG0880041980.01.T01 | AT2G23560 | 36.923 | 260 | 154 | 5 | 24 | 278 | 5 | 259 | 5.75e-52 | 171 |
| MsG0880041980.01.T01 | AT2G23610 | 38.976 | 254 | 110 | 6 | 26 | 278 | 8 | 217 | 8.98e-52 | 169 |
| MsG0880041980.01.T01 | AT1G33990 | 36.719 | 256 | 152 | 6 | 26 | 276 | 96 | 346 | 2.03e-51 | 172 |
| MsG0880041980.01.T01 | AT5G10300 | 40.078 | 257 | 144 | 6 | 27 | 278 | 6 | 257 | 1.27e-50 | 167 |
| MsG0880041980.01.T01 | AT1G26360 | 37.066 | 259 | 154 | 5 | 22 | 276 | 184 | 437 | 1.08e-49 | 170 |
| MsG0880041980.01.T01 | AT1G69240 | 36.015 | 261 | 156 | 6 | 22 | 276 | 182 | 437 | 4.51e-48 | 166 |
| MsG0880041980.01.T01 | AT4G09900 | 35.938 | 256 | 154 | 6 | 26 | 276 | 97 | 347 | 5.95e-48 | 163 |
| MsG0880041980.01.T01 | AT4G16690 | 37.052 | 251 | 145 | 6 | 27 | 272 | 12 | 254 | 2.03e-46 | 156 |
| MsG0880041980.01.T01 | AT5G58310 | 33.846 | 260 | 155 | 6 | 27 | 275 | 5 | 258 | 2.38e-45 | 154 |
| MsG0880041980.01.T01 | AT3G10870 | 35.124 | 242 | 151 | 2 | 27 | 264 | 20 | 259 | 6.00e-43 | 148 |
| MsG0880041980.01.T01 | AT2G23600 | 46.341 | 164 | 81 | 4 | 26 | 183 | 23 | 185 | 1.66e-42 | 144 |
| MsG0880041980.01.T01 | AT2G23550 | 34.351 | 262 | 132 | 6 | 24 | 278 | 5 | 233 | 6.79e-39 | 136 |
| MsG0880041980.01.T01 | AT2G23580 | 43.030 | 165 | 86 | 4 | 24 | 181 | 5 | 168 | 3.72e-38 | 133 |
| MsG0880041980.01.T01 | AT4G37140 | 51.923 | 104 | 50 | 0 | 26 | 129 | 2 | 105 | 1.41e-35 | 124 |
| MsG0880041980.01.T01 | AT5G10300 | 42.683 | 164 | 87 | 4 | 27 | 185 | 6 | 167 | 1.36e-33 | 121 |
| MsG0880041980.01.T01 | AT2G23550 | 39.394 | 165 | 92 | 3 | 24 | 181 | 12 | 175 | 9.20e-32 | 117 |
| MsG0880041980.01.T01 | AT4G37140 | 49.451 | 91 | 46 | 0 | 26 | 116 | 2 | 92 | 9.60e-30 | 108 |
| MsG0880041980.01.T01 | AT2G23570 | 36.464 | 181 | 105 | 4 | 104 | 278 | 2 | 178 | 6.14e-26 | 101 |
| MsG0880041980.01.T01 | AT3G29770 | 53.425 | 73 | 34 | 0 | 27 | 99 | 138 | 210 | 9.36e-20 | 87.0 |
Find 54 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGATTAGATGACATGATTT+TGG | 0.156541 | 8:+2076668 | None:intergenic |
| GATTAAAACTTGTGAAATTA+AGG | 0.180617 | 8:+2076994 | None:intergenic |
| ATTCTTGTGGGTCATAGTTT+TGG | 0.257233 | 8:-2077104 | MsG0880041980.01.T01:CDS |
| GATTCCATAAATGTCATAAA+AGG | 0.332073 | 8:+2077149 | None:intergenic |
| ATCACTTTCACCTTAACATA+TGG | 0.333062 | 8:+2076026 | None:intergenic |
| TCCCATTTGAGAAGAATAAC+TGG | 0.334392 | 8:+2076724 | None:intergenic |
| TCCCAGTTATTCTTCTCAAA+TGG | 0.351765 | 8:-2076726 | MsG0880041980.01.T01:CDS |
| TGAATCTCTTGAACCTGTAT+TGG | 0.356816 | 8:+2077194 | None:intergenic |
| AAGCACTTTGTGCTTGTTCA+TGG | 0.379288 | 8:-2077317 | MsG0880041980.01.T01:CDS |
| CACCCTTCCATTCCTCTCCT+TGG | 0.397125 | 8:+2076127 | None:intergenic |
| TGGTGCATGGTGTTGGTATA+AGG | 0.413431 | 8:-2077285 | MsG0880041980.01.T01:CDS |
| CATGCGCAGGATTTGACACT+TGG | 0.431246 | 8:-2076218 | MsG0880041980.01.T01:intron |
| CCCAGTTATTCTTCTCAAAT+GGG | 0.433850 | 8:-2076725 | MsG0880041980.01.T01:CDS |
| CTTGTTCATGGAGCTTTCCA+TGG | 0.435353 | 8:-2077305 | MsG0880041980.01.T01:CDS |
| CACAAGAATCACCTTCTCCT+TGG | 0.435596 | 8:+2077118 | None:intergenic |
| TTGCTGATGATGAAGACTTT+AGG | 0.448268 | 8:+2076104 | None:intergenic |
| CGCATAGAATTCCACTCGAC+TGG | 0.448344 | 8:-2076754 | MsG0880041980.01.T01:intron |
| GTTACAACTATTGACTTGGC+TGG | 0.453693 | 8:-2077230 | MsG0880041980.01.T01:CDS |
| TCCTCCAACTGCCTCATTGT+GGG | 0.457446 | 8:-2076694 | MsG0880041980.01.T01:CDS |
| ACAAGAATCACCTTCTCCTT+GGG | 0.467997 | 8:+2077119 | None:intergenic |
| GAGTACTCGTCCATATGTTA+AGG | 0.484652 | 8:-2076036 | MsG0880041980.01.T01:CDS |
| GATACCCTTATCTGTTGCTA+TGG | 0.489986 | 8:-2077078 | MsG0880041980.01.T01:CDS |
| ACTATTGACTTGGCTGGTTG+TGG | 0.490659 | 8:-2077224 | MsG0880041980.01.T01:CDS |
| AAGGAGAAGGTGATTCTTGT+GGG | 0.501737 | 8:-2077116 | MsG0880041980.01.T01:CDS |
| CTTTCCATGGTGCATGGTGT+TGG | 0.509188 | 8:-2077292 | MsG0880041980.01.T01:CDS |
| TTTGACACTTGGATTATCGT+TGG | 0.520549 | 8:-2076207 | MsG0880041980.01.T01:CDS |
| TAATGTTACAACTATTGACT+TGG | 0.521866 | 8:-2077234 | MsG0880041980.01.T01:CDS |
| TTGTGGTATCAATCCAATAC+AGG | 0.522801 | 8:-2077207 | MsG0880041980.01.T01:CDS |
| GCAACTATGTTGAAATCAGC+TGG | 0.524395 | 8:-2077260 | MsG0880041980.01.T01:CDS |
| CCCATTTGAGAAGAATAACT+GGG | 0.529688 | 8:+2076725 | None:intergenic |
| TTGTCATTAAAGATAGGATG+TGG | 0.530621 | 8:+2076179 | None:intergenic |
| TATGGAATCTCTTCGTCCCA+AGG | 0.537531 | 8:-2077135 | MsG0880041980.01.T01:CDS |
| ATCTCTTCGTCCCAAGGAGA+AGG | 0.541417 | 8:-2077129 | MsG0880041980.01.T01:CDS |
| GATCCCCACAATGAGGCAGT+TGG | 0.542886 | 8:+2076690 | None:intergenic |
| AGAGTTACCAAGGAGAGGAA+TGG | 0.547036 | 8:-2076134 | MsG0880041980.01.T01:CDS |
| ATCCTCCAACTGCCTCATTG+TGG | 0.547827 | 8:-2076695 | MsG0880041980.01.T01:CDS |
| CAAGGAGAAGGTGATTCTTG+TGG | 0.551500 | 8:-2077117 | MsG0880041980.01.T01:CDS |
| CACTTGGATTATCGTTGGTG+AGG | 0.553239 | 8:-2076202 | MsG0880041980.01.T01:CDS |
| CCCCACAATGAGGCAGTTGG+AGG | 0.556623 | 8:+2076693 | None:intergenic |
| ATGGAGCTTTCCATGGTGCA+TGG | 0.559504 | 8:-2077298 | MsG0880041980.01.T01:CDS |
| TTACCAAGGAGAGGAATGGA+AGG | 0.564907 | 8:-2076130 | MsG0880041980.01.T01:CDS |
| GTTAAGGTGAAAGTGATAAG+TGG | 0.578209 | 8:-2076020 | MsG0880041980.01.T01:CDS |
| CCTCCAACTGCCTCATTGTG+GGG | 0.589274 | 8:-2076693 | MsG0880041980.01.T01:CDS |
| ACAAGACAATTTGTTGACAG+AGG | 0.600544 | 8:-2076081 | MsG0880041980.01.T01:CDS |
| GCATAGAATTCCACTCGACT+GGG | 0.605641 | 8:-2076753 | MsG0880041980.01.T01:intron |
| AAACAAGAGTTACCAAGGAG+AGG | 0.608738 | 8:-2076139 | MsG0880041980.01.T01:CDS |
| CTGGGATTCTCCCAGTCGAG+TGG | 0.610363 | 8:+2076743 | None:intergenic |
| GAAAGAAACAAGAGTTACCA+AGG | 0.616024 | 8:-2076144 | MsG0880041980.01.T01:CDS |
| ATTATCAATATGTTTAAACA+AGG | 0.622902 | 8:-2077401 | None:intergenic |
| GATAAGTGGTTCAGATCACA+TGG | 0.632899 | 8:-2076006 | MsG0880041980.01.T01:CDS |
| TATACCAACACCATGCACCA+TGG | 0.635877 | 8:+2077288 | None:intergenic |
| ATATCAATTATCTCCTCATG+AGG | 0.650480 | 8:-2076646 | MsG0880041980.01.T01:intron |
| TACCAAGGAGAGGAATGGAA+GGG | 0.683422 | 8:-2076129 | MsG0880041980.01.T01:CDS |
| AGCAATGTTTAGAATGTGTG+AGG | 0.716542 | 8:+2075956 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATTTATTTATGTTTTTT+TGG | + | Chr8:2076949-2076968 | None:intergenic | 10.0% |
| !!! | TTTATTCTTTCATTTTTCAT+TGG | - | Chr8:2075986-2076005 | MsG0880041980.01.T01:CDS | 15.0% |
| !! | ACAGTATGATTGATTAATAT+GGG | - | Chr8:2076406-2076425 | MsG0880041980.01.T01:intron | 20.0% |
| !! | GATTAAAACTTGTGAAATTA+AGG | + | Chr8:2076345-2076364 | None:intergenic | 20.0% |
| !! | GTTAAGTGATAAAAATTTAG+AGG | - | Chr8:2076861-2076880 | MsG0880041980.01.T01:intron | 20.0% |
| !! | GTTATATCCATATATGTTTA+TGG | - | Chr8:2076473-2076492 | MsG0880041980.01.T01:intron | 20.0% |
| !!! | ACCATGTTATATTTTTGTTT+AGG | - | Chr8:2077039-2077058 | MsG0880041980.01.T01:CDS | 20.0% |
| !!! | AGTTTTTTGTCATTAAAGAT+AGG | + | Chr8:2077166-2077185 | None:intergenic | 20.0% |
| !!! | CATGTTATATTTTTGTTTAG+GGG | - | Chr8:2077041-2077060 | MsG0880041980.01.T01:CDS | 20.0% |
| !!! | CCATGTTATATTTTTGTTTA+GGG | - | Chr8:2077040-2077059 | MsG0880041980.01.T01:CDS | 20.0% |
| !!! | CTGAGTTTTAATTTTAATTG+TGG | - | Chr8:2076510-2076529 | MsG0880041980.01.T01:intron | 20.0% |
| !!! | TAAAGTACCATAAACATATA+TGG | + | Chr8:2076483-2076502 | None:intergenic | 20.0% |
| !!! | TAATATTTTGTATTCCATCT+AGG | + | Chr8:2076895-2076914 | None:intergenic | 20.0% |
| ! | CACAGTATGATTGATTAATA+TGG | - | Chr8:2076405-2076424 | MsG0880041980.01.T01:intron | 25.0% |
| ! | CCCTAAACAAAAATATAACA+TGG | + | Chr8:2077043-2077062 | None:intergenic | 25.0% |
| ! | GATTCCATAAATGTCATAAA+AGG | + | Chr8:2076190-2076209 | None:intergenic | 25.0% |
| !! | TAATGTTACAACTATTGACT+TGG | - | Chr8:2076102-2076121 | MsG0880041980.01.T01:CDS | 25.0% |
| !! | TAGATTAGATGACATGATTT+TGG | + | Chr8:2076671-2076690 | None:intergenic | 25.0% |
| !! | TGAACCTTTTATGACATTTA+TGG | - | Chr8:2076183-2076202 | MsG0880041980.01.T01:CDS | 25.0% |
| !!! | TTTCACAAGTTTTAATCAAG+AGG | - | Chr8:2076348-2076367 | MsG0880041980.01.T01:intron | 25.0% |
| ACATTGAAGCCATATATTGA+TGG | - | Chr8:2077092-2077111 | MsG0880041980.01.T01:CDS | 30.0% | |
| ATAGAATACAGTCTTGATCA+TGG | - | Chr8:2076451-2076470 | MsG0880041980.01.T01:intron | 30.0% | |
| ATATCAATTATCTCCTCATG+AGG | - | Chr8:2076690-2076709 | MsG0880041980.01.T01:CDS | 30.0% | |
| ATCACTTTCACCTTAACATA+TGG | + | Chr8:2077313-2077332 | None:intergenic | 30.0% | |
| CGAAAAAAAATTACCTCATG+AGG | + | Chr8:2076706-2076725 | None:intergenic | 30.0% | |
| TTGTCATTAAAGATAGGATG+TGG | + | Chr8:2077160-2077179 | None:intergenic | 30.0% | |
| ! | ACTGCAACAGAAATTTTGTT+AGG | + | Chr8:2076292-2076311 | None:intergenic | 30.0% |
| ! | CTGCAACAGAAATTTTGTTA+GGG | + | Chr8:2076291-2076310 | None:intergenic | 30.0% |
| ! | TAGAGGTTTTTAAACCTAGA+TGG | - | Chr8:2076878-2076897 | MsG0880041980.01.T01:intron | 30.0% |
| ! | TTTTCCATAGCAACAGATAA+GGG | + | Chr8:2076265-2076284 | None:intergenic | 30.0% |
| ! | TTTTTCCATAGCAACAGATA+AGG | + | Chr8:2076266-2076285 | None:intergenic | 30.0% |
| !! | GTCAAGAGAAAGTATCAAAA+CGG | + | Chr8:2076976-2076995 | None:intergenic | 30.0% |
| !! | TCAAGAGAAAGTATCAAAAC+GGG | + | Chr8:2076975-2076994 | None:intergenic | 30.0% |
| !!! | CATTTTTCATTGGTGCTAAT+GGG | - | Chr8:2075996-2076015 | MsG0880041980.01.T01:CDS | 30.0% |
| !!! | TCATTTTTCATTGGTGCTAA+TGG | - | Chr8:2075995-2076014 | MsG0880041980.01.T01:CDS | 30.0% |
| !!! | TTCTACTTTTTAACCTAGAC+CGG | - | Chr8:2076791-2076810 | MsG0880041980.01.T01:intron | 30.0% |
| AAAGAAGACCACAAATAGAG+AGG | - | Chr8:2076816-2076835 | MsG0880041980.01.T01:intron | 35.0% | |
| CCCAGTTATTCTTCTCAAAT+GGG | - | Chr8:2076611-2076630 | MsG0880041980.01.T01:intron | 35.0% | |
| CCCATTTGAGAAGAATAACT+GGG | + | Chr8:2076614-2076633 | None:intergenic | 35.0% | |
| CGCATGTTACCATCAATATA+TGG | + | Chr8:2077104-2077123 | None:intergenic | 35.0% | |
| GAAAGAAACAAGAGTTACCA+AGG | - | Chr8:2077192-2077211 | MsG0880041980.01.T01:CDS | 35.0% | |
| GGTATCATGTTAAGCTAAGT+TGG | + | Chr8:2077022-2077041 | None:intergenic | 35.0% | |
| GTTAAGGTGAAAGTGATAAG+TGG | - | Chr8:2077316-2077335 | MsG0880041980.01.T01:CDS | 35.0% | |
| TATTTGTGGTCTTCTTTGAC+CGG | + | Chr8:2076813-2076832 | None:intergenic | 35.0% | |
| TCCCAGTTATTCTTCTCAAA+TGG | - | Chr8:2076610-2076629 | MsG0880041980.01.T01:intron | 35.0% | |
| TCCCATTTGAGAAGAATAAC+TGG | + | Chr8:2076615-2076634 | None:intergenic | 35.0% | |
| TGAATCTCTTGAACCTGTAT+TGG | + | Chr8:2076145-2076164 | None:intergenic | 35.0% | |
| TTGTGGTATCAATCCAATAC+AGG | - | Chr8:2076129-2076148 | MsG0880041980.01.T01:CDS | 35.0% | |
| TTTGACACTTGGATTATCGT+TGG | - | Chr8:2077129-2077148 | MsG0880041980.01.T01:CDS | 35.0% | |
| ! | AGCAATGTTTAGAATGTGTG+AGG | + | Chr8:2077383-2077402 | None:intergenic | 35.0% |
| ! | ATTCTTGTGGGTCATAGTTT+TGG | - | Chr8:2076232-2076251 | MsG0880041980.01.T01:intron | 35.0% |
| ! | TGACAGAGGATTTTCAAATG+AGG | - | Chr8:2077269-2077288 | MsG0880041980.01.T01:CDS | 35.0% |
| ! | TGCAGTTTTTATCACTGCAT+TGG | - | Chr8:2076306-2076325 | MsG0880041980.01.T01:intron | 35.0% |
| ! | TTGCTGATGATGAAGACTTT+AGG | + | Chr8:2077235-2077254 | None:intergenic | 35.0% |
| !! | ACAAGACAATTTGTTGACAG+AGG | - | Chr8:2077255-2077274 | MsG0880041980.01.T01:CDS | 35.0% |
| AAACAAGAGTTACCAAGGAG+AGG | - | Chr8:2077197-2077216 | MsG0880041980.01.T01:CDS | 40.0% | |
| AAGCACTTTGTGCTTGTTCA+TGG | - | Chr8:2076019-2076038 | MsG0880041980.01.T01:CDS | 40.0% | |
| AAGGAGAAGGTGATTCTTGT+GGG | - | Chr8:2076220-2076239 | MsG0880041980.01.T01:intron | 40.0% | |
| ACAAGAATCACCTTCTCCTT+GGG | + | Chr8:2076220-2076239 | None:intergenic | 40.0% | |
| AGACCACAAATAGAGAGGTT+TGG | - | Chr8:2076821-2076840 | MsG0880041980.01.T01:intron | 40.0% | |
| CTACCAAACCTCTCTATTTG+TGG | + | Chr8:2076827-2076846 | None:intergenic | 40.0% | |
| GAGTACTCGTCCATATGTTA+AGG | - | Chr8:2077300-2077319 | MsG0880041980.01.T01:CDS | 40.0% | |
| GATAAGTGGTTCAGATCACA+TGG | - | Chr8:2077330-2077349 | MsG0880041980.01.T01:CDS | 40.0% | |
| GATACCCTTATCTGTTGCTA+TGG | - | Chr8:2076258-2076277 | MsG0880041980.01.T01:intron | 40.0% | |
| GCAACTATGTTGAAATCAGC+TGG | - | Chr8:2076076-2076095 | MsG0880041980.01.T01:CDS | 40.0% | |
| ! | ATATTGATGGTAACATGCGC+AGG | - | Chr8:2077105-2077124 | MsG0880041980.01.T01:CDS | 40.0% |
| !! | GCTAAGTTGGTGTACACATT+TGG | + | Chr8:2077009-2077028 | None:intergenic | 40.0% |
| !! | GTTACAACTATTGACTTGGC+TGG | - | Chr8:2076106-2076125 | MsG0880041980.01.T01:CDS | 40.0% |
| !!! | ATGTGTGAGGTGAGCTTTTT+TGG | + | Chr8:2077370-2077389 | None:intergenic | 40.0% |
| !!! | TGAGGTGAGCTTTTTTGGTT+TGG | + | Chr8:2077365-2077384 | None:intergenic | 40.0% |
| !!! | TTGTGGGTCATAGTTTTGGA+GGG | - | Chr8:2076236-2076255 | MsG0880041980.01.T01:intron | 40.0% |
| AGAGTTACCAAGGAGAGGAA+TGG | - | Chr8:2077202-2077221 | MsG0880041980.01.T01:CDS | 45.0% | |
| CAAGGAGAAGGTGATTCTTG+TGG | - | Chr8:2076219-2076238 | MsG0880041980.01.T01:intron | 45.0% | |
| CACAAGAATCACCTTCTCCT+TGG | + | Chr8:2076221-2076240 | None:intergenic | 45.0% | |
| CACTTGGATTATCGTTGGTG+AGG | - | Chr8:2077134-2077153 | MsG0880041980.01.T01:CDS | 45.0% | |
| CAGTCGAGTGGAATTCTATG+CGG | + | Chr8:2076584-2076603 | None:intergenic | 45.0% | |
| CTTGTTCATGGAGCTTTCCA+TGG | - | Chr8:2076031-2076050 | MsG0880041980.01.T01:CDS | 45.0% | |
| GCATAGAATTCCACTCGACT+GGG | - | Chr8:2076583-2076602 | MsG0880041980.01.T01:intron | 45.0% | |
| TACCAAGGAGAGGAATGGAA+GGG | - | Chr8:2077207-2077226 | MsG0880041980.01.T01:CDS | 45.0% | |
| TATACCAACACCATGCACCA+TGG | + | Chr8:2076051-2076070 | None:intergenic | 45.0% | |
| TATGGAATCTCTTCGTCCCA+AGG | - | Chr8:2076201-2076220 | MsG0880041980.01.T01:CDS | 45.0% | |
| TTACCAAGGAGAGGAATGGA+AGG | - | Chr8:2077206-2077225 | MsG0880041980.01.T01:CDS | 45.0% | |
| ! | GATTTTGGATCCCCACAATG+AGG | + | Chr8:2076656-2076675 | None:intergenic | 45.0% |
| !! | ACTATTGACTTGGCTGGTTG+TGG | - | Chr8:2076112-2076131 | MsG0880041980.01.T01:CDS | 45.0% |
| !! | TGGTGCATGGTGTTGGTATA+AGG | - | Chr8:2076051-2076070 | MsG0880041980.01.T01:CDS | 45.0% |
| !!! | CTTGTGGGTCATAGTTTTGG+AGG | - | Chr8:2076235-2076254 | MsG0880041980.01.T01:intron | 45.0% |
| ATCCTCCAACTGCCTCATTG+TGG | - | Chr8:2076641-2076660 | MsG0880041980.01.T01:intron | 50.0% | |
| ATCTCTTCGTCCCAAGGAGA+AGG | - | Chr8:2076207-2076226 | MsG0880041980.01.T01:CDS | 50.0% | |
| ATGGAGCTTTCCATGGTGCA+TGG | - | Chr8:2076038-2076057 | MsG0880041980.01.T01:CDS | 50.0% | |
| CATGCGCAGGATTTGACACT+TGG | - | Chr8:2077118-2077137 | MsG0880041980.01.T01:CDS | 50.0% | |
| CGCATAGAATTCCACTCGAC+TGG | - | Chr8:2076582-2076601 | MsG0880041980.01.T01:intron | 50.0% | |
| CTTTCCATGGTGCATGGTGT+TGG | - | Chr8:2076044-2076063 | MsG0880041980.01.T01:CDS | 50.0% | |
| TCCTCCAACTGCCTCATTGT+GGG | - | Chr8:2076642-2076661 | MsG0880041980.01.T01:intron | 50.0% | |
| TGGTCTTCTTTGACCGGTCT+AGG | + | Chr8:2076807-2076826 | None:intergenic | 50.0% | |
| CACCCTTCCATTCCTCTCCT+TGG | + | Chr8:2077212-2077231 | None:intergenic | 55.0% | |
| CCTCCAACTGCCTCATTGTG+GGG | - | Chr8:2076643-2076662 | MsG0880041980.01.T01:intron | 55.0% | |
| GATCCCCACAATGAGGCAGT+TGG | + | Chr8:2076649-2076668 | None:intergenic | 55.0% | |
| CCCCACAATGAGGCAGTTGG+AGG | + | Chr8:2076646-2076665 | None:intergenic | 60.0% | |
| CTGGGATTCTCCCAGTCGAG+TGG | + | Chr8:2076596-2076615 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 2075944 | 2077414 | 2075944 | ID=MsG0880041980.01;Name=MsG0880041980.01 |
| Chr8 | mRNA | 2075944 | 2077414 | 2075944 | ID=MsG0880041980.01.T01;Parent=MsG0880041980.01;Name=MsG0880041980.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|278 |
| Chr8 | exon | 2076989 | 2077414 | 2076989 | ID=MsG0880041980.01.T01:exon:1274;Parent=MsG0880041980.01.T01 |
| Chr8 | exon | 2076647 | 2076769 | 2076647 | ID=MsG0880041980.01.T01:exon:1273;Parent=MsG0880041980.01.T01 |
| Chr8 | exon | 2075944 | 2076231 | 2075944 | ID=MsG0880041980.01.T01:exon:1272;Parent=MsG0880041980.01.T01 |
| Chr8 | CDS | 2076989 | 2077414 | 2076989 | ID=MsG0880041980.01.T01:cds;Parent=MsG0880041980.01.T01 |
| Chr8 | CDS | 2076647 | 2076769 | 2076647 | ID=MsG0880041980.01.T01:cds;Parent=MsG0880041980.01.T01 |
| Chr8 | CDS | 2075944 | 2076231 | 2075944 | ID=MsG0880041980.01.T01:cds;Parent=MsG0880041980.01.T01 |
| Gene Sequence |
| Protein sequence |
