AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042515.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042515.01.T01 MTR_8g015510 84.444 450 66 2 1 449 1 447 0.0 763
MsG0880042515.01.T01 MTR_2g097540 70.045 444 128 5 7 449 4 443 0.0 631
MsG0880042515.01.T01 MTR_2g100520 67.411 448 137 5 7 449 4 447 0.0 607
MsG0880042515.01.T01 MTR_2g100510 70.238 420 123 2 30 449 30 447 0.0 602
MsG0880042515.01.T01 MTR_2g097530 70.702 413 119 2 37 449 37 447 0.0 601
MsG0880042515.01.T01 MTR_2g100560 70.702 413 119 2 37 449 42 452 0.0 601
MsG0880042515.01.T01 MTR_8g015510 85.015 327 48 1 124 449 1 327 0.0 554
MsG0880042515.01.T01 MTR_3g088590 57.761 393 164 2 42 434 85 475 2.03e-162 467
MsG0880042515.01.T01 MTR_8g062790 57.653 392 162 3 39 430 37 424 2.54e-157 452
MsG0880042515.01.T01 MTR_3g093030 49.524 420 204 4 15 434 7 418 9.91e-146 422
MsG0880042515.01.T01 MTR_8g075310 50.835 419 182 6 15 428 15 414 7.96e-139 405
MsG0880042515.01.T01 MTR_2g100550 73.248 157 41 1 7 163 4 159 3.63e-73 241
MsG0880042515.01.T01 MTR_8g063060 44.194 310 139 10 122 428 58 336 1.98e-70 228
MsG0880042515.01.T01 MTR_1g028070 72.807 114 31 0 155 268 14 127 8.36e-48 160
MsG0880042515.01.T01 MTR_3g077040 56.716 134 34 2 137 270 1 110 4.78e-37 132
MsG0880042515.01.T01 MTR_1205s0010 30.178 169 112 2 251 419 1 163 6.99e-18 81.3
MsG0880042515.01.T01 MTR_3g093040 44.444 99 45 1 137 225 1 99 1.27e-17 84.0
MsG0880042515.01.T01 MTR_8g062090 50.000 114 19 4 163 270 29 110 2.43e-15 72.4
MsG0880042515.01.T01 MTR_2g100530 52.239 67 27 2 387 449 4 69 1.92e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042515.01.T01 AT1G51760 66.207 435 141 5 17 449 10 440 0.0 587
MsG0880042515.01.T01 AT1G51780 65.789 418 136 5 17 431 10 423 0.0 568
MsG0880042515.01.T01 AT5G56660 63.038 395 141 3 39 433 36 425 0.0 524
MsG0880042515.01.T01 AT5G56650 61.314 411 150 5 40 449 36 438 0.0 521
MsG0880042515.01.T01 AT5G56650 70.545 275 79 1 40 314 36 308 1.35e-144 415
MsG0880042515.01.T01 AT1G44350 54.324 370 162 3 48 417 83 445 6.34e-138 404
MsG0880042515.01.T01 AT3G02875 51.134 397 190 4 39 434 37 430 8.28e-138 403
MsG0880042515.01.T01 AT5G54140 47.981 421 213 5 16 435 6 421 4.76e-135 395
MsG0880042515.01.T01 AT3G02875 54.545 275 125 0 39 313 37 311 5.68e-106 318
MsG0880042515.01.T01 AT3G02875 55.882 238 105 0 39 276 37 274 2.76e-94 287

Find 96 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTAGTTTCAAATATAAT+TGG 0.234302 8:-9888184 MsG0880042515.01.T01:three_prime_UTR
AATTCCTCATAACCCAATTC+TGG 0.242885 8:+9890665 None:intergenic
GAAAATGTTACTGCTATCTT+TGG 0.258557 8:-9889691 MsG0880042515.01.T01:CDS
TGTTGCTTTAAGAGCTGATA+TGG 0.312924 8:-9890531 MsG0880042515.01.T01:CDS
CCTCCAATTGTGACATAATC+TGG 0.328160 8:+9889234 None:intergenic
TTAACATTTAAGAATGGTTC+AGG 0.333219 8:+9888096 None:intergenic
GATTCATGAGAATCCAGAAT+TGG 0.333626 8:-9890678 MsG0880042515.01.T01:CDS
GTTGCAGTCACTGGTGTCAT+TGG 0.356001 8:-9890581 MsG0880042515.01.T01:CDS
TAAACTGATAAGATCAGAAT+TGG 0.358775 8:-9890633 MsG0880042515.01.T01:CDS
TTGGAAGCATTTGAATTTGA+AGG 0.361752 8:+9890847 None:intergenic
ACTGCAACTGGATGTTTATA+AGG 0.366834 8:+9890596 None:intergenic
ACTGGTGTCATTGGCTTCAT+AGG 0.375731 8:-9890572 MsG0880042515.01.T01:CDS
CTCTAGGTCTGGTACAATAT+TGG 0.376876 8:-9889629 MsG0880042515.01.T01:CDS
GCTCAATCCGCTGTCTCAAT+TGG 0.380728 8:+9889178 None:intergenic
ATTCCAGATTATGTCACAAT+TGG 0.382523 8:-9889237 MsG0880042515.01.T01:CDS
ATTTGAAACTAATCAATTAG+AGG 0.383133 8:+9888192 None:intergenic
ACATTGGAAGCTGCCAATAT+AGG 0.383462 8:+9889532 None:intergenic
GTCATTGGCTTCATAGGAAC+TGG 0.393426 8:-9890566 MsG0880042515.01.T01:CDS
CCTCCACTTCCTTCCTCCGC+TGG 0.396191 8:+9889745 None:intergenic
AGCTGCCATGGATGGTGTCT+TGG 0.396361 8:+9888507 None:intergenic
GTGTCGGTTACAATGTTTCA+TGG 0.410191 8:-9889279 MsG0880042515.01.T01:CDS
ACACTCTATAGATCCTATAT+TGG 0.411287 8:-9889545 MsG0880042515.01.T01:CDS
CCACATGCATGCATCTTTCC+AGG 0.416417 8:+9890306 None:intergenic
ATGACACCAGTGACTGCAAC+TGG 0.422420 8:+9890584 None:intergenic
CTCATGTTACCATGTTACTT+GGG 0.422444 8:-9890275 MsG0880042515.01.T01:CDS
CCTGGATACTTCTTCATGCT+TGG 0.432844 8:-9888454 MsG0880042515.01.T01:CDS
GCTCATGTTACCATGTTACT+TGG 0.435721 8:-9890276 MsG0880042515.01.T01:CDS
CACTTCCTTCCTCCGCTGGT+TGG 0.448553 8:+9889749 None:intergenic
ACTCATTTAACATTTAAGAA+TGG 0.462597 8:+9888090 None:intergenic
TCAACATTGTTTACAGTTGG+AGG 0.464668 8:+9888592 None:intergenic
GGCGAAGTGGCCTCTAGGTC+TGG 0.466522 8:-9889640 MsG0880042515.01.T01:CDS
AGGAATTGAAATTGAAAAGC+AGG 0.466711 8:+9888116 None:intergenic
CTAGAGGCCACTTCGCCTAC+TGG 0.467805 8:+9889646 None:intergenic
CCAGATTATGTCACAATTGG+AGG 0.468913 8:-9889234 MsG0880042515.01.T01:CDS
ATTCATGAGAATCCAGAATT+GGG 0.469283 8:-9890677 MsG0880042515.01.T01:CDS
TTTACAGTTGGAGGATAGCT+AGG 0.472938 8:+9888601 None:intergenic
TTTGTTTATGTAAGAAGAGT+AGG 0.474692 8:+9890960 None:intergenic
TTCTATCAAGAGGTCATACC+TGG 0.482790 8:-9888472 MsG0880042515.01.T01:CDS
ACTTCGCCTACTGGTAATTC+AGG 0.491438 8:+9889655 None:intergenic
TCTTCATTGATTTCGAGATA+AGG 0.495633 8:+9888385 None:intergenic
GAATCCAGAATTGGGTTATG+AGG 0.496062 8:-9890669 MsG0880042515.01.T01:CDS
GTCTAGAGGATCGGCCTCAC+GGG 0.496189 8:+9889483 None:intergenic
GCATGGAGTGCGGCTCCGTA+AGG 0.496484 8:+9888355 None:intergenic
ACCATAGGAAATGGTGGAGT+GGG 0.497354 8:-9890346 MsG0880042515.01.T01:intron
TGAAGAATGATTCACATAAA+CGG 0.498035 8:-9888429 MsG0880042515.01.T01:CDS
TATCTCGAAATCAATGAAGA+TGG 0.498257 8:-9888382 MsG0880042515.01.T01:CDS
CCAGCGGAGGAAGGAAGTGG+AGG 0.504024 8:-9889745 MsG0880042515.01.T01:CDS
TTTGAAACTAATCAATTAGA+GGG 0.504948 8:+9888193 None:intergenic
AATGAAGATGGACTCCCTTA+CGG 0.505445 8:-9888370 MsG0880042515.01.T01:CDS
CAACCAGCGGAGGAAGGAAG+TGG 0.509548 8:-9889748 MsG0880042515.01.T01:CDS
CAGTAGGCGAAGTGGCCTCT+AGG 0.510382 8:-9889645 MsG0880042515.01.T01:CDS
TCAGCTCTTAAAGCAACAAA+AGG 0.511836 8:+9890536 None:intergenic
GTAATATAATGAACCTGCAT+TGG 0.513192 8:+9890500 None:intergenic
AAACATCCAGTTGCAGTCAC+TGG 0.520491 8:-9890590 MsG0880042515.01.T01:CDS
CAGCGGAGGAAGGAAGTGGA+GGG 0.523270 8:-9889744 MsG0880042515.01.T01:CDS
TATGGATGCTCTTCCAATGC+AGG 0.533057 8:-9890513 MsG0880042515.01.T01:intron
GGTACAATATTGGCAGGAAG+TGG 0.540626 8:-9889619 MsG0880042515.01.T01:CDS
AGCTCCAACTCATAGGAAGA+TGG 0.544178 8:-9891003 None:intergenic
CCAAGCATGAAGAAGTATCC+AGG 0.546741 8:+9888454 None:intergenic
CATGTTTGCGCAGGTTGTGT+CGG 0.552153 8:-9889295 MsG0880042515.01.T01:intron
GGCCGATCCTCTAGACTCCC+AGG 0.553522 8:-9889476 MsG0880042515.01.T01:intron
ATTGAGACAGCGGATTGAGC+AGG 0.555935 8:-9889175 MsG0880042515.01.T01:intron
AGGTCTGGTACAATATTGGC+AGG 0.557388 8:-9889625 MsG0880042515.01.T01:CDS
AACTAACAGCTAAAGATGCA+TGG 0.558120 8:+9888338 None:intergenic
AGCTAGGTTTCACTTCATCA+AGG 0.559722 8:+9888617 None:intergenic
ATGTAAGAAGAGTAGGTGGC+TGG 0.563856 8:+9890967 None:intergenic
CATGGAGTGCGGCTCCGTAA+GGG 0.565806 8:+9888356 None:intergenic
AAGTCAACATTGTTTACAGT+TGG 0.570203 8:+9888589 None:intergenic
GCTCTTAAAGCAACAAAAGG+AGG 0.573507 8:+9890539 None:intergenic
TTGTTTAGAAAACGCTCGAA+AGG 0.575778 8:+9889209 None:intergenic
CTTTGCAGCCCCAAGTAACA+TGG 0.576315 8:+9890266 None:intergenic
AGTCTAGAGGATCGGCCTCA+CGG 0.577537 8:+9889482 None:intergenic
AACCATAGGAAATGGTGGAG+TGG 0.586674 8:-9890347 MsG0880042515.01.T01:intron
AGCGGAGGAAGGAAGTGGAG+GGG 0.589908 8:-9889743 MsG0880042515.01.T01:CDS
GTTTAAACCATAGGAAATGG+TGG 0.592898 8:-9890352 MsG0880042515.01.T01:intron
TCATGTTACCATGTTACTTG+GGG 0.594965 8:-9890274 MsG0880042515.01.T01:CDS
GTTTATGTAAGAAGAGTAGG+TGG 0.606750 8:+9890963 None:intergenic
CTGTAAGCTAATAATCACAT+TGG 0.613177 8:+9889516 None:intergenic
AAATCTTCAGCTGCCATGGA+TGG 0.617144 8:+9888499 None:intergenic
TAGTGCCAAGACACCATCCA+TGG 0.617990 8:-9888512 MsG0880042515.01.T01:CDS
GAGCACAAGAGTAAAGTACC+TGG 0.618593 8:-9890324 MsG0880042515.01.T01:CDS
TACCTGGGAGTCTAGAGGAT+CGG 0.631639 8:+9889474 None:intergenic
AGCTAAAGATGCATGGAGTG+CGG 0.631942 8:+9888345 None:intergenic
ATTAGTCCTGAATTACCAGT+AGG 0.637744 8:-9889661 MsG0880042515.01.T01:CDS
GCTTCAACCAATTGAGACAG+CGG 0.640361 8:-9889185 MsG0880042515.01.T01:CDS
ACATATGTGCAATGCAACTG+TGG 0.640574 8:-9888644 MsG0880042515.01.T01:CDS
GGTGCTACCTGGGAGTCTAG+AGG 0.648162 8:+9889469 None:intergenic
AATGTTGCAGTGGATATGCT+CGG 0.650200 8:-9888550 MsG0880042515.01.T01:CDS
ATAGGATCTATAGAGTGTTG+AGG 0.653821 8:+9889550 None:intergenic
TGAATTACCAGTAGGCGAAG+TGG 0.656699 8:-9889653 MsG0880042515.01.T01:CDS
CAATATTGTACCAGACCTAG+AGG 0.670733 8:+9889630 None:intergenic
AGACAGTGCCAAAAGTCCAG+AGG 0.678154 8:-9890732 MsG0880042515.01.T01:CDS
ACAGCACATTGTCTCCCGTG+AGG 0.721980 8:-9889497 MsG0880042515.01.T01:CDS
TCGGTTACAATGTTTCATGG+AGG 0.722123 8:-9889276 MsG0880042515.01.T01:CDS
TGGTTGGAAAACAAGAACGA+CGG 0.727655 8:+9889765 None:intergenic
CCTGGAAAGATGCATGCATG+TGG 0.730006 8:-9890306 MsG0880042515.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTTTTATTTAATTCA+GGG - Chr8:9889305-9889324 MsG0880042515.01.T01:intron 10.0%
!!! TTTTTCTTTTTATTTAATTC+AGG - Chr8:9889304-9889323 MsG0880042515.01.T01:intron 10.0%
!! AAAAAAAATGGACATTAAAA+AGG + Chr8:9890958-9890977 None:intergenic 15.0%
!! TAATAGTTATTACAACATAA+AGG + Chr8:9888911-9888930 None:intergenic 15.0%
!!! ATATGATGATGAAAAAATAT+TGG + Chr8:9888270-9888289 None:intergenic 15.0%
!!! TGATTAGTTTCAAATATAAT+TGG - Chr8:9890911-9890930 MsG0880042515.01.T01:five_prime_UTR 15.0%
!! TATAGTATGAAATCATCAAA+AGG + Chr8:9888971-9888990 None:intergenic 20.0%
!!! ATTTGAAACTAATCAATTAG+AGG + Chr8:9890906-9890925 None:intergenic 20.0%
!!! TTTGAAACTAATCAATTAGA+GGG + Chr8:9890905-9890924 None:intergenic 20.0%
! AAAGGAAGCTAAAGATAAAA+AGG + Chr8:9888893-9888912 None:intergenic 25.0%
! AATAAGCTGAAAAAAGCTTA+TGG - Chr8:9889124-9889143 MsG0880042515.01.T01:intron 25.0%
! ATCTTTACAACTATATGAGA+AGG + Chr8:9888639-9888658 None:intergenic 25.0%
! TAAACTGATAAGATCAGAAT+TGG - Chr8:9888462-9888481 MsG0880042515.01.T01:CDS 25.0%
! TAAATGATAATCAGCTATTG+TGG - Chr8:9889090-9889109 MsG0880042515.01.T01:intron 25.0%
! TAATTACTAAAAGCAGCTTA+TGG - Chr8:9890292-9890311 MsG0880042515.01.T01:CDS 25.0%
! TACAAAAATGAATCTGCTTA+GGG + Chr8:9890407-9890426 None:intergenic 25.0%
! TGAAAAGCAGGTAAAAAAAA+TGG + Chr8:9890970-9890989 None:intergenic 25.0%
! TGAAGAATGATTCACATAAA+CGG - Chr8:9890666-9890685 MsG0880042515.01.T01:CDS 25.0%
! TTATCTTCAAAAACATCAAC+AGG - Chr8:9890778-9890797 MsG0880042515.01.T01:CDS 25.0%
! TTTGTTTATGTAAGAAGAGT+AGG + Chr8:9888138-9888157 None:intergenic 25.0%
!! AGATTTTTCATTCTATCAAG+AGG - Chr8:9890613-9890632 MsG0880042515.01.T01:CDS 25.0%
!!! ACATGGTTTGTTTTAGTATA+TGG + Chr8:9888222-9888241 None:intergenic 25.0%
!!! CACTTATTTTTGCTTCAAAA+CGG + Chr8:9889502-9889521 None:intergenic 25.0%
!!! CATGGTTTGTTTTAGTATAT+GGG + Chr8:9888221-9888240 None:intergenic 25.0%
!!! TCATTTTTGTAGGTTATCAT+TGG - Chr8:9890416-9890435 MsG0880042515.01.T01:intron 25.0%
AACCAGTTTACAAGAATTCT+TGG + Chr8:9890104-9890123 None:intergenic 30.0%
AAGTCAACATTGTTTACAGT+TGG + Chr8:9890509-9890528 None:intergenic 30.0%
ACAATCATTATCAAGCTATC+AGG + Chr8:9890074-9890093 None:intergenic 30.0%
ACACTCTATAGATCCTATAT+TGG - Chr8:9889550-9889569 MsG0880042515.01.T01:CDS 30.0%
AGGAATTGAAATTGAAAAGC+AGG + Chr8:9890982-9891001 None:intergenic 30.0%
AGTTGTCATGTTTAAACCAT+AGG - Chr8:9888734-9888753 MsG0880042515.01.T01:intron 30.0%
ATTCATGAGAATCCAGAATT+GGG - Chr8:9888418-9888437 MsG0880042515.01.T01:CDS 30.0%
ATTCCAGATTATGTCACAAT+TGG - Chr8:9889858-9889877 MsG0880042515.01.T01:intron 30.0%
CATGTTTAAACCATAGGAAA+TGG - Chr8:9888740-9888759 MsG0880042515.01.T01:intron 30.0%
CTACAAAAATGAATCTGCTT+AGG + Chr8:9890408-9890427 None:intergenic 30.0%
CTGTAAGCTAATAATCACAT+TGG + Chr8:9889582-9889601 None:intergenic 30.0%
GAAAATGTTACTGCTATCTT+TGG - Chr8:9889404-9889423 MsG0880042515.01.T01:intron 30.0%
GAAGCAAAAATAAGTGGAAA+AGG - Chr8:9889506-9889525 MsG0880042515.01.T01:CDS 30.0%
GAATTTGAAGGAAAAACACA+TGG + Chr8:9888239-9888258 None:intergenic 30.0%
GTAATATAATGAACCTGCAT+TGG + Chr8:9888598-9888617 None:intergenic 30.0%
GTTATGTAAGGAAAACAAGA+CGG + Chr8:9889779-9889798 None:intergenic 30.0%
TACCAAGAATTCTTGTAAAC+TGG - Chr8:9890099-9890118 MsG0880042515.01.T01:intron 30.0%
TATCTCGAAATCAATGAAGA+TGG - Chr8:9890713-9890732 MsG0880042515.01.T01:CDS 30.0%
TGGAATACTAATGGCTTATT+TGG - Chr8:9890228-9890247 MsG0880042515.01.T01:intron 30.0%
TTGCTAAGGAAAAACAAAAC+AGG + Chr8:9888942-9888961 None:intergenic 30.0%
TTGTCCAGATATAGCTTATA+AGG + Chr8:9889650-9889669 None:intergenic 30.0%
! AAAACATCATTGCTTGTTGA+AGG - Chr8:9889744-9889763 MsG0880042515.01.T01:CDS 30.0%
! GAGCATAAAAAGCACAAATT+TGG - Chr8:9890208-9890227 MsG0880042515.01.T01:intron 30.0%
! GCACAAATTTGGAATACTAA+TGG - Chr8:9890219-9890238 MsG0880042515.01.T01:intron 30.0%
! TCAACAAGCAATGATGTTTT+TGG + Chr8:9889744-9889763 None:intergenic 30.0%
! TCCAGAAGCTAAAATTTTCT+TGG + Chr8:9889378-9889397 None:intergenic 30.0%
!! CTAAGCAGATTCATTTTTGT+AGG - Chr8:9890406-9890425 MsG0880042515.01.T01:intron 30.0%
!! TCAAAAGGATCAATTTGCTA+AGG + Chr8:9888956-9888975 None:intergenic 30.0%
!! TCTTCATTGATTTCGAGATA+AGG + Chr8:9890713-9890732 None:intergenic 30.0%
!! TTGGAAGCATTTGAATTTGA+AGG + Chr8:9888251-9888270 None:intergenic 30.0%
!!! CGTTTTGAAGCAAAAATAAG+TGG - Chr8:9889500-9889519 MsG0880042515.01.T01:CDS 30.0%
AACTAACAGCTAAAGATGCA+TGG + Chr8:9890760-9890779 None:intergenic 35.0%
AAGCATTTCCGGTACTATTT+GGG + Chr8:9890346-9890365 None:intergenic 35.0%
AATTCCTCATAACCCAATTC+TGG + Chr8:9888433-9888452 None:intergenic 35.0%
ACTGCAACTGGATGTTTATA+AGG + Chr8:9888502-9888521 None:intergenic 35.0%
AGCACCTTATAAGCTATATC+TGG - Chr8:9889643-9889662 MsG0880042515.01.T01:CDS 35.0%
ATATCAAACTAGCTCGACAA+TGG + Chr8:9889711-9889730 None:intergenic 35.0%
ATCATCCAATCAAAAACCTC+TGG + Chr8:9888382-9888401 None:intergenic 35.0%
ATTAGTCCTGAATTACCAGT+AGG - Chr8:9889434-9889453 MsG0880042515.01.T01:intron 35.0%
CAAGCATTTGTGGGATTATT+TGG + Chr8:9889176-9889195 None:intergenic 35.0%
CTAAACAAGTCAATCCAAAC+AGG - Chr8:9890381-9890400 MsG0880042515.01.T01:intron 35.0%
CTACTATCACAAGCATTTGT+GGG + Chr8:9889185-9889204 None:intergenic 35.0%
GATTCATGAGAATCCAGAAT+TGG - Chr8:9888417-9888436 MsG0880042515.01.T01:CDS 35.0%
GCAAAAATAAGTGGAAAAGG+AGG - Chr8:9889509-9889528 MsG0880042515.01.T01:CDS 35.0%
GTTTAAACCATAGGAAATGG+TGG - Chr8:9888743-9888762 MsG0880042515.01.T01:intron 35.0%
GTTTATGTAAGAAGAGTAGG+TGG + Chr8:9888135-9888154 None:intergenic 35.0%
TAAGCATTTCCGGTACTATT+TGG + Chr8:9890347-9890366 None:intergenic 35.0%
TCAACATTGTTTACAGTTGG+AGG + Chr8:9890506-9890525 None:intergenic 35.0%
TCAGCTCTTAAAGCAACAAA+AGG + Chr8:9888562-9888581 None:intergenic 35.0%
TCTACTATCACAAGCATTTG+TGG + Chr8:9889186-9889205 None:intergenic 35.0%
TCTACTGATGTAAGCATTTC+CGG + Chr8:9890357-9890376 None:intergenic 35.0%
TTGTTTAGAAAACGCTCGAA+AGG + Chr8:9889889-9889908 None:intergenic 35.0%
TTTGGGAGAGTTCATAGAAA+CGG + Chr8:9890329-9890348 None:intergenic 35.0%
! AAAGTCCAGAGGTTTTTGAT+TGG - Chr8:9888374-9888393 MsG0880042515.01.T01:CDS 35.0%
! AGAAGCATATATGATTGACG+TGG + Chr8:9889223-9889242 None:intergenic 35.0%
! ATCAAAAACCTCTGGACTTT+TGG + Chr8:9888374-9888393 None:intergenic 35.0%
! CTCATGTTACCATGTTACTT+GGG - Chr8:9888820-9888839 MsG0880042515.01.T01:intron 35.0%
! TCATGTTACCATGTTACTTG+GGG - Chr8:9888821-9888840 MsG0880042515.01.T01:intron 35.0%
!! ATAGGATCTATAGAGTGTTG+AGG + Chr8:9889548-9889567 None:intergenic 35.0%
!! TGTTGCTTTAAGAGCTGATA+TGG - Chr8:9888564-9888583 MsG0880042515.01.T01:CDS 35.0%
!!! GCCAAGAAAATTTTAGCTTC+TGG - Chr8:9889374-9889393 MsG0880042515.01.T01:intron 35.0%
AATGTTGCAGTGGATATGCT+CGG - Chr8:9890545-9890564 MsG0880042515.01.T01:CDS 40.0%
ACATATGTGCAATGCAACTG+TGG - Chr8:9890451-9890470 MsG0880042515.01.T01:intron 40.0%
ACATTGGAAGCTGCCAATAT+AGG + Chr8:9889566-9889585 None:intergenic 40.0%
AGCTAGGTTTCACTTCATCA+AGG + Chr8:9890481-9890500 None:intergenic 40.0%
CAATATTGTACCAGACCTAG+AGG + Chr8:9889468-9889487 None:intergenic 40.0%
CCAGATTATGTCACAATTGG+AGG - Chr8:9889861-9889880 MsG0880042515.01.T01:intron 40.0%
CCTCCAATTGTGACATAATC+TGG + Chr8:9889864-9889883 None:intergenic 40.0%
CTCTAGGTCTGGTACAATAT+TGG - Chr8:9889466-9889485 MsG0880042515.01.T01:intron 40.0%
GAATCCAGAATTGGGTTATG+AGG - Chr8:9888426-9888445 MsG0880042515.01.T01:CDS 40.0%
GCTCATGTTACCATGTTACT+TGG - Chr8:9888819-9888838 MsG0880042515.01.T01:intron 40.0%
GCTCTTAAAGCAACAAAAGG+AGG + Chr8:9888559-9888578 None:intergenic 40.0%
TCGGTTACAATGTTTCATGG+AGG - Chr8:9889819-9889838 MsG0880042515.01.T01:intron 40.0%
TGAAAAATCTTCAGCTGCCA+TGG + Chr8:9890603-9890622 None:intergenic 40.0%
TGAACTCTCCCAAATAGTAC+CGG - Chr8:9890335-9890354 MsG0880042515.01.T01:CDS 40.0%
TGGTTGGAAAACAAGAACGA+CGG + Chr8:9889333-9889352 None:intergenic 40.0%
TTCTATCAAGAGGTCATACC+TGG - Chr8:9890623-9890642 MsG0880042515.01.T01:CDS 40.0%
TTTACAGTTGGAGGATAGCT+AGG + Chr8:9890497-9890516 None:intergenic 40.0%
! AATGAAGATGGACTCCCTTA+CGG - Chr8:9890725-9890744 MsG0880042515.01.T01:CDS 40.0%
! ATAGCTTATAAGGTGCTACC+TGG + Chr8:9889640-9889659 None:intergenic 40.0%
! GCATTTTGTGAATGTTGCAG+TGG - Chr8:9890535-9890554 MsG0880042515.01.T01:CDS 40.0%
! TAGCTTATAAGGTGCTACCT+GGG + Chr8:9889639-9889658 None:intergenic 40.0%
!! GTGTCGGTTACAATGTTTCA+TGG - Chr8:9889816-9889835 MsG0880042515.01.T01:intron 40.0%
AAACATCCAGTTGCAGTCAC+TGG - Chr8:9888505-9888524 MsG0880042515.01.T01:CDS 45.0%
AAATCTTCAGCTGCCATGGA+TGG + Chr8:9890599-9890618 None:intergenic 45.0%
ACTTCGCCTACTGGTAATTC+AGG + Chr8:9889443-9889462 None:intergenic 45.0%
AGCTAAAGATGCATGGAGTG+CGG + Chr8:9890753-9890772 None:intergenic 45.0%
AGGTCTGGTACAATATTGGC+AGG - Chr8:9889470-9889489 MsG0880042515.01.T01:intron 45.0%
ATGTAAGAAGAGTAGGTGGC+TGG + Chr8:9888131-9888150 None:intergenic 45.0%
CCTGGATACTTCTTCATGCT+TGG - Chr8:9890641-9890660 MsG0880042515.01.T01:CDS 45.0%
CTGTAGTCTTCATCGTCTCA+TGG - Chr8:9889264-9889283 MsG0880042515.01.T01:CDS 45.0%
GCGCAAACATGCGTTATGTA+AGG + Chr8:9889791-9889810 None:intergenic 45.0%
GCTTCAACCAATTGAGACAG+CGG - Chr8:9889910-9889929 MsG0880042515.01.T01:intron 45.0%
GGTACAATATTGGCAGGAAG+TGG - Chr8:9889476-9889495 MsG0880042515.01.T01:intron 45.0%
GTCTTCATCGTCTCATGGAT+AGG - Chr8:9889269-9889288 MsG0880042515.01.T01:CDS 45.0%
TACATAACGCATGTTTGCGC+AGG - Chr8:9889791-9889810 MsG0880042515.01.T01:intron 45.0%
TATGGATGCTCTTCCAATGC+AGG - Chr8:9888582-9888601 MsG0880042515.01.T01:CDS 45.0%
TGAATTACCAGTAGGCGAAG+TGG - Chr8:9889442-9889461 MsG0880042515.01.T01:intron 45.0%
! AACCATAGGAAATGGTGGAG+TGG - Chr8:9888748-9888767 MsG0880042515.01.T01:intron 45.0%
! ACCATAGGAAATGGTGGAGT+GGG - Chr8:9888749-9888768 MsG0880042515.01.T01:intron 45.0%
! GAGCACAAGAGTAAAGTACC+TGG - Chr8:9888771-9888790 MsG0880042515.01.T01:intron 45.0%
!! ACTGGTGTCATTGGCTTCAT+AGG - Chr8:9888523-9888542 MsG0880042515.01.T01:CDS 45.0%
!! CCAAGCATGAAGAAGTATCC+AGG + Chr8:9890644-9890663 None:intergenic 45.0%
!! GTCATTGGCTTCATAGGAAC+TGG - Chr8:9888529-9888548 MsG0880042515.01.T01:CDS 45.0%
!!! CGTTCTTGTTTTCCAACCAG+CGG - Chr8:9889334-9889353 MsG0880042515.01.T01:intron 45.0%
AGACAGTGCCAAAAGTCCAG+AGG - Chr8:9888363-9888382 MsG0880042515.01.T01:CDS 50.0%
ATGACACCAGTGACTGCAAC+TGG + Chr8:9888514-9888533 None:intergenic 50.0%
CATGTTTGCGCAGGTTGTGT+CGG - Chr8:9889800-9889819 MsG0880042515.01.T01:intron 50.0%
CCACATGCATGCATCTTTCC+AGG + Chr8:9888792-9888811 None:intergenic 50.0%
CCTGGAAAGATGCATGCATG+TGG - Chr8:9888789-9888808 MsG0880042515.01.T01:intron 50.0%
CTTTGCAGCCCCAAGTAACA+TGG + Chr8:9888832-9888851 None:intergenic 50.0%
GAATCTGCTTAGGGCCTGTT+TGG + Chr8:9890398-9890417 None:intergenic 50.0%
GCTCAATCCGCTGTCTCAAT+TGG + Chr8:9889920-9889939 None:intergenic 50.0%
TACCTGGGAGTCTAGAGGAT+CGG + Chr8:9889624-9889643 None:intergenic 50.0%
TAGTGCCAAGACACCATCCA+TGG - Chr8:9890583-9890602 MsG0880042515.01.T01:CDS 50.0%
TCCCACTCCACCATTTCCTA+TGG + Chr8:9888753-9888772 None:intergenic 50.0%
!! ATTGAGACAGCGGATTGAGC+AGG - Chr8:9889920-9889939 MsG0880042515.01.T01:intron 50.0%
!! GTTGCAGTCACTGGTGTCAT+TGG - Chr8:9888514-9888533 MsG0880042515.01.T01:CDS 50.0%
!!! TCTTGTTTTCCAACCAGCGG+AGG - Chr8:9889337-9889356 MsG0880042515.01.T01:intron 50.0%
ACAGCACATTGTCTCCCGTG+AGG - Chr8:9889598-9889617 MsG0880042515.01.T01:CDS 55.0%
AGCTGCCATGGATGGTGTCT+TGG + Chr8:9890591-9890610 None:intergenic 55.0%
AGTCTAGAGGATCGGCCTCA+CGG + Chr8:9889616-9889635 None:intergenic 55.0%
! GTTTTCCAACCAGCGGAGGA+AGG - Chr8:9889341-9889360 MsG0880042515.01.T01:intron 55.0%
AGCGGAGGAAGGAAGTGGAG+GGG - Chr8:9889352-9889371 MsG0880042515.01.T01:intron 60.0%
CAACCAGCGGAGGAAGGAAG+TGG - Chr8:9889347-9889366 MsG0880042515.01.T01:intron 60.0%
CACTTCCTTCCTCCGCTGGT+TGG + Chr8:9889349-9889368 None:intergenic 60.0%
CAGCGGAGGAAGGAAGTGGA+GGG - Chr8:9889351-9889370 MsG0880042515.01.T01:intron 60.0%
CAGTAGGCGAAGTGGCCTCT+AGG - Chr8:9889450-9889469 MsG0880042515.01.T01:intron 60.0%
CATGGAGTGCGGCTCCGTAA+GGG + Chr8:9890742-9890761 None:intergenic 60.0%
CTAGAGGCCACTTCGCCTAC+TGG + Chr8:9889452-9889471 None:intergenic 60.0%
GTCTAGAGGATCGGCCTCAC+GGG + Chr8:9889615-9889634 None:intergenic 60.0%
! GGTGCTACCTGGGAGTCTAG+AGG + Chr8:9889629-9889648 None:intergenic 60.0%
CCAGCGGAGGAAGGAAGTGG+AGG - Chr8:9889350-9889369 MsG0880042515.01.T01:intron 65.0%
CCTCCACTTCCTTCCTCCGC+TGG + Chr8:9889353-9889372 None:intergenic 65.0%
GCATGGAGTGCGGCTCCGTA+AGG + Chr8:9890743-9890762 None:intergenic 65.0%
GGCCGATCCTCTAGACTCCC+AGG - Chr8:9889619-9889638 MsG0880042515.01.T01:CDS 65.0%
GGCGAAGTGGCCTCTAGGTC+TGG - Chr8:9889455-9889474 MsG0880042515.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 9888103 9891014 9888103 ID=MsG0880042515.01;Name=MsG0880042515.01
Chr8 mRNA 9888103 9891014 9888103 ID=MsG0880042515.01.T01;Parent=MsG0880042515.01;Name=MsG0880042515.01.T01;_AED=0.41;_eAED=0.41;_QI=135|1|1|1|1|1|5|173|449
Chr8 exon 9888103 9888689 9888103 ID=MsG0880042515.01.T01:exon:2669;Parent=MsG0880042515.01.T01
Chr8 exon 9889176 9889304 9889176 ID=MsG0880042515.01.T01:exon:2668;Parent=MsG0880042515.01.T01
Chr8 exon 9889477 9889791 9889477 ID=MsG0880042515.01.T01:exon:2667;Parent=MsG0880042515.01.T01
Chr8 exon 9890236 9890361 9890236 ID=MsG0880042515.01.T01:exon:2666;Parent=MsG0880042515.01.T01
Chr8 exon 9890514 9891014 9890514 ID=MsG0880042515.01.T01:exon:2665;Parent=MsG0880042515.01.T01
Chr8 five_prime_UTR 9890880 9891014 9890880 ID=MsG0880042515.01.T01:five_prime_utr;Parent=MsG0880042515.01.T01
Chr8 CDS 9890514 9890879 9890514 ID=MsG0880042515.01.T01:cds;Parent=MsG0880042515.01.T01
Chr8 CDS 9890236 9890361 9890236 ID=MsG0880042515.01.T01:cds;Parent=MsG0880042515.01.T01
Chr8 CDS 9889477 9889791 9889477 ID=MsG0880042515.01.T01:cds;Parent=MsG0880042515.01.T01
Chr8 CDS 9889176 9889304 9889176 ID=MsG0880042515.01.T01:cds;Parent=MsG0880042515.01.T01
Chr8 CDS 9888276 9888689 9888276 ID=MsG0880042515.01.T01:cds;Parent=MsG0880042515.01.T01
Chr8 three_prime_UTR 9888103 9888275 9888103 ID=MsG0880042515.01.T01:three_prime_utr;Parent=MsG0880042515.01.T01
Gene Sequence

>MsG0880042515.01.T01

ATGTGTTTTTCCTTCAAATTCAAATGCTTCCAATATTTTTTCATCATCATATTCATATTACATGTCTTTGCTGCAACACAAATTTTGTCATCATCAACACATAATTACTCATTCAACAATTTTCTAGACAGTGCCAAAAGTCCAGAGGTTTTTGATTGGATGATCAATATCAGAAGAAAGATTCATGAGAATCCAGAATTGGGTTATGAGGAATTTGAAACAAGTAAACTGATAAGATCAGAATTGGATAAAATGAGTATTCCTTATAAACATCCAGTTGCAGTCACTGGTGTCATTGGCTTCATAGGAACTGGAAATCCTCCTTTTGTTGCTTTAAGAGCTGATATGGATGCTCTTCCAATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCATGTGGTCATGATGCTCATGTTACCATGTTACTTGGGGCTGCAAAGATTCTCAAACAGCATGAAAAAGAGATACAAGGAACCGTCGTTCTTGTTTTCCAACCAGCGGAGGAAGGAAGTGGAGGGGCCAAGAAAATTTTAGCTTCTGGAGCATTAGAAAATGTTACTGCTATCTTTGGATTGCATATTAGTCCTGAATTACCAGTAGGCGAAGTGGCCTCTAGGTCTGGTACAATATTGGCAGGAAGTGGCCGTTTTGAAGCAAAAATAAGTGGAAAAGGAGGTCATGCTGCTATTCCTCAACACTCTATAGATCCTATATTGGCAGCTTCCAATGTGATTATTAGCTTACAGCACATTGTCTCCCGTGAGGCCGATCCTCTAGACTCCCAGGTTGTGTCGGTTACAATGTTTCATGGAGGTAGTGCATTCAATGTTATTCCAGATTATGTCACAATTGGAGGTACCTTTCGAGCGTTTTCTAAACAAAGCTTCAACCAATTGAGACAGCGGATTGAGCAGGTTATCATTGGACAAACTTCTGTACATATGTGCAATGCAACTGTGGACTTCCTTGATGAAGTGAAACCTAGCTATCCTCCAACTGTAAACAATGTTGACTTGCATGAGCATTTTGTGAATGTTGCAGTGGATATGCTCGGCATCAATAAAGTTAATAGTGCCAAGACACCATCCATGGCAGCTGAAGATTTTTCATTCTATCAAGAGGTCATACCTGGATACTTCTTCATGCTTGGAGTGAAGAATGATTCACATAAACGGTTCGAGTCTTTATTACACTCACCTTATCTCGAAATCAATGAAGATGGACTCCCTTACGGAGCCGCACTCCATGCATCTTTAGCTGTTAGTTATCTTCAAAAACATCAACAGGATGTACTTGAAATTGATAGAAAATATCATGATGAATTATAA
Protein sequence

>MsG0880042515.01.T01

MCFSFKFKCFQYFFIIIFILHVFAATQILSSSTHNYSFNNFLDSAKSPEVFDWMINIRRKIHENPELGYEEFETSKLIRSELDKMSIPYKHPVAVTGVIGFIGTGNPPFVALRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVTMLLGAAKILKQHEKEIQGTVVLVFQPAEEGSGGAKKILASGALENVTAIFGLHISPELPVGEVASRSGTILAGSGRFEAKISGKGGHAAIPQHSIDPILAASNVIISLQHIVSREADPLDSQVVSVTMFHGGSAFNVIPDYVTIGGTFRAFSKQSFNQLRQRIEQVIIGQTSVHMCNATVDFLDEVKPSYPPTVNNVDLHEHFVNVAVDMLGINKVNSAKTPSMAAEDFSFYQEVIPGYFFMLGVKNDSHKRFESLLHSPYLEINEDGLPYGAALHASLAVSYLQKHQQDVLEIDRKYHDEL*