Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042650.01.T01 | XP_013444392.1 | 98.462 | 390 | 6 | 0 | 1 | 390 | 1 | 390 | 0 | 793 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042650.01.T01 | P24095 | 77.949 | 390 | 83 | 2 | 1 | 390 | 1 | 387 | 0 | 635 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042650.01.T01 | A0A072TLZ7 | 98.462 | 390 | 6 | 0 | 1 | 390 | 1 | 390 | 0.0 | 793 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280006451.01 | MsG0880042650.01 | 0.816386 | 5.680006e-52 | 4.019010e-49 |
| MsG0880042645.01 | MsG0880042650.01 | 0.859520 | 3.907954e-63 | 1.034929e-59 |
| MsG0880042650.01 | MsG0880043918.01 | 0.821413 | 4.092003e-53 | 3.326723e-50 |
| MsG0380015988.01 | MsG0880042650.01 | 0.901767 | 1.919441e-78 | 2.632310e-74 |
| MsG0280007902.01 | MsG0880042650.01 | 0.802015 | 6.854898e-49 | 3.321863e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042650.01.T01 | MTR_8g018735 | 98.462 | 390 | 6 | 0 | 1 | 390 | 1 | 390 | 0.0 | 793 |
| MsG0880042650.01.T01 | MTR_8g018735 | 98.462 | 390 | 6 | 0 | 1 | 390 | 1 | 390 | 0.0 | 792 |
| MsG0880042650.01.T01 | MTR_8g018730 | 90.769 | 390 | 35 | 1 | 1 | 390 | 1 | 389 | 0.0 | 732 |
| MsG0880042650.01.T01 | MTR_5g024020 | 82.653 | 392 | 66 | 2 | 1 | 390 | 1 | 392 | 0.0 | 678 |
| MsG0880042650.01.T01 | MTR_5g024020 | 82.443 | 393 | 67 | 2 | 1 | 391 | 1 | 393 | 0.0 | 677 |
| MsG0880042650.01.T01 | MTR_8g018730 | 83.846 | 390 | 32 | 2 | 1 | 390 | 1 | 359 | 0.0 | 661 |
| MsG0880042650.01.T01 | MTR_2g099560 | 70.918 | 392 | 101 | 5 | 3 | 390 | 7 | 389 | 0.0 | 560 |
| MsG0880042650.01.T01 | MTR_2g099570 | 70.180 | 389 | 105 | 3 | 3 | 390 | 7 | 385 | 0.0 | 560 |
| MsG0880042650.01.T01 | MTR_8g018420 | 66.667 | 381 | 116 | 3 | 11 | 390 | 9 | 379 | 1.47e-178 | 519 |
| MsG0880042650.01.T01 | MTR_3g081130 | 64.377 | 393 | 127 | 6 | 1 | 391 | 1 | 382 | 6.43e-172 | 502 |
| MsG0880042650.01.T01 | MTR_8g018550 | 63.590 | 390 | 130 | 4 | 5 | 389 | 8 | 390 | 1.31e-168 | 494 |
| MsG0880042650.01.T01 | MTR_8g020990 | 61.917 | 386 | 143 | 3 | 5 | 389 | 8 | 390 | 6.35e-168 | 492 |
| MsG0880042650.01.T01 | MTR_8g018570 | 61.440 | 389 | 142 | 6 | 5 | 389 | 8 | 392 | 2.04e-166 | 488 |
| MsG0880042650.01.T01 | MTR_8g018690 | 62.113 | 388 | 139 | 3 | 3 | 389 | 7 | 387 | 4.35e-166 | 488 |
| MsG0880042650.01.T01 | MTR_8g018510 | 59.231 | 390 | 156 | 3 | 2 | 390 | 5 | 392 | 4.63e-164 | 483 |
| MsG0880042650.01.T01 | MTR_8g018430 | 58.673 | 392 | 152 | 5 | 1 | 390 | 1 | 384 | 1.08e-161 | 476 |
| MsG0880042650.01.T01 | MTR_8g018520 | 59.326 | 386 | 151 | 4 | 7 | 390 | 10 | 391 | 3.10e-158 | 468 |
| MsG0880042650.01.T01 | MTR_8g018690 | 58.247 | 388 | 134 | 4 | 3 | 389 | 7 | 367 | 3.68e-149 | 443 |
| MsG0880042650.01.T01 | MTR_3g081130 | 66.454 | 313 | 99 | 3 | 81 | 391 | 2 | 310 | 1.71e-147 | 437 |
| MsG0880042650.01.T01 | MTR_8g018450 | 49.227 | 388 | 148 | 9 | 7 | 390 | 7 | 349 | 5.71e-120 | 367 |
| MsG0880042650.01.T01 | MTR_1g083020 | 49.745 | 392 | 160 | 8 | 10 | 390 | 17 | 382 | 4.63e-115 | 355 |
| MsG0880042650.01.T01 | MTR_8g018650 | 48.586 | 389 | 154 | 7 | 7 | 393 | 5 | 349 | 2.28e-112 | 347 |
| MsG0880042650.01.T01 | MTR_8g018620 | 49.347 | 383 | 148 | 7 | 7 | 387 | 5 | 343 | 1.32e-111 | 345 |
| MsG0880042650.01.T01 | MTR_7g113410 | 48.756 | 402 | 164 | 11 | 6 | 390 | 15 | 391 | 1.26e-109 | 342 |
| MsG0880042650.01.T01 | MTR_1g104650 | 47.355 | 397 | 171 | 8 | 7 | 390 | 4 | 375 | 6.43e-109 | 339 |
| MsG0880042650.01.T01 | MTR_8g018590 | 49.425 | 348 | 132 | 10 | 64 | 397 | 35 | 352 | 1.74e-95 | 303 |
| MsG0880042650.01.T01 | MTR_8g020970 | 40.290 | 345 | 191 | 7 | 56 | 391 | 113 | 451 | 4.65e-71 | 236 |
| MsG0880042650.01.T01 | MTR_8g020970 | 40.290 | 345 | 191 | 7 | 56 | 391 | 113 | 451 | 3.54e-69 | 235 |
| MsG0880042650.01.T01 | MTR_8g011340 | 39.106 | 358 | 186 | 10 | 55 | 389 | 46 | 394 | 2.55e-67 | 228 |
| MsG0880042650.01.T01 | MTR_3g479460 | 37.151 | 358 | 193 | 8 | 42 | 390 | 90 | 424 | 3.37e-65 | 223 |
| MsG0880042650.01.T01 | MTR_3g079450 | 35.695 | 367 | 199 | 10 | 36 | 390 | 82 | 423 | 1.05e-60 | 207 |
| MsG0880042650.01.T01 | MTR_8g018730 | 89.908 | 109 | 11 | 0 | 282 | 390 | 1 | 109 | 3.08e-60 | 205 |
| MsG0880042650.01.T01 | MTR_4g066170 | 36.061 | 391 | 225 | 12 | 7 | 389 | 52 | 425 | 1.55e-59 | 208 |
| MsG0880042650.01.T01 | MTR_3g079450 | 35.695 | 367 | 199 | 10 | 36 | 390 | 82 | 423 | 2.88e-59 | 207 |
| MsG0880042650.01.T01 | MTR_3g079420 | 36.000 | 350 | 210 | 6 | 46 | 390 | 45 | 385 | 3.89e-59 | 206 |
| MsG0880042650.01.T01 | MTR_8g080230 | 36.364 | 341 | 193 | 11 | 63 | 390 | 109 | 438 | 3.22e-54 | 193 |
| MsG0880042650.01.T01 | MTR_4g088810 | 32.668 | 401 | 229 | 11 | 4 | 391 | 53 | 425 | 1.64e-53 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042650.01.T01 | AT1G55020 | 50.127 | 393 | 156 | 8 | 10 | 390 | 19 | 383 | 1.06e-117 | 362 |
| MsG0880042650.01.T01 | AT3G22400 | 45.592 | 397 | 174 | 9 | 11 | 390 | 34 | 405 | 3.13e-103 | 325 |
| MsG0880042650.01.T01 | AT1G72520 | 39.883 | 341 | 189 | 7 | 56 | 388 | 114 | 446 | 6.60e-69 | 234 |
| MsG0880042650.01.T01 | AT1G17420 | 40.179 | 336 | 182 | 9 | 63 | 388 | 115 | 441 | 4.03e-65 | 223 |
| MsG0880042650.01.T01 | AT3G45140 | 37.197 | 371 | 201 | 13 | 29 | 390 | 70 | 417 | 1.39e-61 | 213 |
| MsG0880042650.01.T01 | AT3G45140 | 41.696 | 283 | 145 | 9 | 117 | 390 | 4 | 275 | 1.48e-57 | 201 |
| MsG0880042650.01.T01 | AT1G67560 | 34.582 | 347 | 187 | 9 | 63 | 390 | 111 | 436 | 3.99e-50 | 181 |
Find 94 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAATATGATGCTAATTT+TGG | 0.100125 | 8:-11989143 | MsG0880042650.01.T01:CDS |
| TCTTCTCTATAATGATTTAA+TGG | 0.176573 | 8:+11988733 | None:intergenic |
| CGGTGCGAAAGATTTCTTTA+AGG | 0.184089 | 8:+11988172 | None:intergenic |
| GTTCCAAGAGATGAAAATTT+TGG | 0.231662 | 8:-11988393 | MsG0880042650.01.T01:CDS |
| CACTTGTCCGACCAGTCCTT+GGG | 0.305880 | 8:-11988603 | MsG0880042650.01.T01:CDS |
| TTATGATGTTTATAATGATT+TGG | 0.319374 | 8:-11988647 | MsG0880042650.01.T01:CDS |
| TATGATGTTTATAATGATTT+GGG | 0.329706 | 8:-11988646 | MsG0880042650.01.T01:CDS |
| TTCAGTTTATTTGTAACTCA+TGG | 0.332336 | 8:-11989028 | MsG0880042650.01.T01:CDS |
| AAATCTAAAGCTTACATCAT+TGG | 0.341756 | 8:+11988962 | None:intergenic |
| CTTCCTCAGTTACCAACTTT+GGG | 0.357245 | 8:-11989194 | MsG0880042650.01.T01:CDS |
| TGGATGACTGATGAAGAATT+TGG | 0.366017 | 8:-11987961 | MsG0880042650.01.T01:CDS |
| GGTGCGAAAGATTTCTTTAA+GGG | 0.366175 | 8:+11988173 | None:intergenic |
| GACTCCTCCGATGATATTTC+CGG | 0.366190 | 8:+11989697 | None:intergenic |
| GACACTGCCACTGCTTTCTT+AGG | 0.367029 | 8:-11989650 | MsG0880042650.01.T01:CDS |
| TGAAGAAGGCGAATCACATT+AGG | 0.368002 | 8:+11987913 | None:intergenic |
| TCTTCCTCAGTTACCAACTT+TGG | 0.377861 | 8:-11989195 | MsG0880042650.01.T01:CDS |
| GCAGATACTAAGAATACATT+TGG | 0.385215 | 8:+11987882 | None:intergenic |
| GCACTTGTCCGACCAGTCCT+TGG | 0.386013 | 8:-11988604 | MsG0880042650.01.T01:CDS |
| GCCTTTACCGACGGACGTTA+TGG | 0.397612 | 8:+11989736 | None:intergenic |
| AAAGAGTTAGTAAAGATGTT+TGG | 0.412319 | 8:-11989833 | MsG0880042650.01.T01:exon |
| TCAAAGCTATCGAACTCATT+TGG | 0.412596 | 8:+11988270 | None:intergenic |
| GATTTCTTTAAGGGCTGGTA+AGG | 0.418543 | 8:+11988182 | None:intergenic |
| ACACCCGGCTTCTCACTCTT+AGG | 0.422642 | 8:+11988423 | None:intergenic |
| AGAATGAAGCTTGGTGTAGT+AGG | 0.432057 | 8:+11989896 | None:intergenic |
| GAGAGCGCAAAGAATCAGAT+AGG | 0.434903 | 8:-11988678 | MsG0880042650.01.T01:CDS |
| TCATCAGACTTCCTTATGTA+TGG | 0.435382 | 8:-11988360 | MsG0880042650.01.T01:CDS |
| GGAGGAGTCACCGGCATTGT+TGG | 0.446572 | 8:-11989683 | MsG0880042650.01.T01:CDS |
| ACTCATTTGGTGTGAAATTG+AGG | 0.457560 | 8:+11988283 | None:intergenic |
| ACAAGTGCGTCACCACCATC+TGG | 0.458687 | 8:+11988619 | None:intergenic |
| AACTGAACCGATTCACGGTT+AGG | 0.465549 | 8:+11989044 | None:intergenic |
| AAATAAACTGAACCGATTCA+CGG | 0.466221 | 8:+11989039 | None:intergenic |
| GCAAATGGAAAGGGTCTAGT+TGG | 0.468531 | 8:-11989242 | MsG0880042650.01.T01:CDS |
| TTTGGAAGAGAGATGGTTGC+TGG | 0.470580 | 8:-11987943 | MsG0880042650.01.T01:CDS |
| CTATAATGATTTAATGGAGC+CGG | 0.470903 | 8:+11988739 | None:intergenic |
| ATTTGGTACTTACTTGAAGA+AGG | 0.476670 | 8:+11987899 | None:intergenic |
| TCTTGTCTTGCTCCCAAAGT+TGG | 0.477942 | 8:+11989182 | None:intergenic |
| TCAGTTTATTTGTAACTCAT+GGG | 0.479467 | 8:-11989027 | MsG0880042650.01.T01:CDS |
| CGAAAGATTTCTTTAAGGGC+TGG | 0.479618 | 8:+11988177 | None:intergenic |
| GCCATAACGTCCGTCGGTAA+AGG | 0.481468 | 8:-11989737 | MsG0880042650.01.T01:CDS |
| GAAGAGTTGCAGACTCTAAG+AGG | 0.481668 | 8:-11988712 | MsG0880042650.01.T01:CDS |
| ACTCTAAGAGGAGATGGAAC+TGG | 0.481698 | 8:-11988700 | MsG0880042650.01.T01:CDS |
| GGTAGAAAACCAACCAGAAA+AGG | 0.492100 | 8:-11988541 | MsG0880042650.01.T01:intron |
| AATATCATCGGAGGAGTCAC+CGG | 0.493995 | 8:-11989692 | MsG0880042650.01.T01:CDS |
| TTTCTTATGTAAAATGCTCC+AGG | 0.494462 | 8:+11989116 | None:intergenic |
| TTGCAGACTCTAAGAGGAGA+TGG | 0.503523 | 8:-11988706 | MsG0880042650.01.T01:CDS |
| CTTCTAACCCTGCGAGGGTA+GGG | 0.508695 | 8:+11988565 | None:intergenic |
| GCACTTATCCCTACCCTCGC+AGG | 0.511543 | 8:-11988573 | MsG0880042650.01.T01:CDS |
| AACAACTCCGCCAACAATGC+CGG | 0.511785 | 8:+11989673 | None:intergenic |
| AGATATTCCTAACCGTGAAT+CGG | 0.517076 | 8:-11989051 | MsG0880042650.01.T01:CDS |
| AGATCCTAAGAGTGAGAAGC+CGG | 0.521116 | 8:-11988427 | MsG0880042650.01.T01:CDS |
| TCAACTGCATAGAGACGTTA+CGG | 0.536637 | 8:+11989627 | None:intergenic |
| AATGGAGCCGGTGTTTGACT+TGG | 0.537557 | 8:+11988751 | None:intergenic |
| GGAGTCACCGGCATTGTTGG+CGG | 0.537869 | 8:-11989680 | MsG0880042650.01.T01:CDS |
| AAAGAAATCTTTCGCACCGA+TGG | 0.540424 | 8:-11988168 | MsG0880042650.01.T01:CDS |
| CCTTTGATTACATGAGGTGG+TGG | 0.551689 | 8:+11988126 | None:intergenic |
| AATAACACCGCCTTTACCGA+CGG | 0.552475 | 8:+11989727 | None:intergenic |
| TGGAAAGGGTCTAGTTGGAA+AGG | 0.553743 | 8:-11989237 | MsG0880042650.01.T01:CDS |
| ACTTCTAACCCTGCGAGGGT+AGG | 0.563371 | 8:+11988564 | None:intergenic |
| CTTGAGGACTTGTTCACCAT+CGG | 0.571669 | 8:+11988152 | None:intergenic |
| ATTTCTTTAAGGGCTGGTAA+GGG | 0.572647 | 8:+11988183 | None:intergenic |
| CTTCAAGAGTCACACTAACA+AGG | 0.574151 | 8:+11989072 | None:intergenic |
| ACTTGTCCGACCAGTCCTTG+GGG | 0.585041 | 8:-11988602 | MsG0880042650.01.T01:CDS |
| AAAATCACTGATTTAAACAA+AGG | 0.585127 | 8:+11988309 | None:intergenic |
| CCACCACCTCATGTAATCAA+AGG | 0.596584 | 8:-11988126 | MsG0880042650.01.T01:intron |
| CACTTATCCCTACCCTCGCA+GGG | 0.596687 | 8:-11988572 | MsG0880042650.01.T01:CDS |
| GAGCAGTTAGCAAGTCTGCA+TGG | 0.599984 | 8:-11987981 | MsG0880042650.01.T01:intron |
| GGCGGTGTTATTGACACCGC+CGG | 0.600528 | 8:-11989716 | MsG0880042650.01.T01:CDS |
| CTTGGAACATAAATCACACC+CGG | 0.607194 | 8:+11988408 | None:intergenic |
| CTTGTCCGACCAGTCCTTGG+GGG | 0.607593 | 8:-11988601 | MsG0880042650.01.T01:CDS |
| TACCACTTCTAACCCTGCGA+GGG | 0.608273 | 8:+11988560 | None:intergenic |
| CATGAGGTGGTGGAAACTTG+AGG | 0.611673 | 8:+11988136 | None:intergenic |
| AATGATTTGGGAAATCCAGA+TGG | 0.614572 | 8:-11988634 | MsG0880042650.01.T01:CDS |
| ATAAGTGCTACTAAGACTGA+TGG | 0.616988 | 8:-11989605 | MsG0880042650.01.T01:intron |
| GTTTGGCATCTTAAACAACA+AGG | 0.623240 | 8:-11989816 | MsG0880042650.01.T01:CDS |
| TGAAGAATTTGGAAGAGAGA+TGG | 0.625232 | 8:-11987950 | MsG0880042650.01.T01:CDS |
| GAGGTACCTTTGATTACATG+AGG | 0.637794 | 8:+11988120 | None:intergenic |
| GACACCGCCGGAAATATCAT+CGG | 0.641337 | 8:-11989704 | MsG0880042650.01.T01:CDS |
| ATTTGACTAAGTATATCTGT+AGG | 0.643284 | 8:+11988210 | None:intergenic |
| GATCCTAAGAGTGAGAAGCC+GGG | 0.644081 | 8:-11988426 | MsG0880042650.01.T01:CDS |
| GCTCCCAAAGTTGGTAACTG+AGG | 0.644714 | 8:+11989191 | None:intergenic |
| AGAGCGCAAAGAATCAGATA+GGG | 0.650951 | 8:-11988677 | MsG0880042650.01.T01:CDS |
| TTCAATGCCATAACGTCCGT+CGG | 0.651352 | 8:-11989743 | MsG0880042650.01.T01:CDS |
| ATAACGTCCGTCGGTAAAGG+CGG | 0.654342 | 8:-11989734 | MsG0880042650.01.T01:CDS |
| CATCATTGGTGAAGAAGATG+CGG | 0.654380 | 8:+11988976 | None:intergenic |
| TACCCTCGCAGGGTTAGAAG+TGG | 0.659775 | 8:-11988562 | MsG0880042650.01.T01:CDS |
| TAGTACTAGAGAATGAAGCT+TGG | 0.663298 | 8:+11989887 | None:intergenic |
| CTACCACTTCTAACCCTGCG+AGG | 0.666085 | 8:+11988559 | None:intergenic |
| TTTGGCATCTTAAACAACAA+GGG | 0.672959 | 8:-11989815 | MsG0880042650.01.T01:CDS |
| GTATCTTCCAAGTCAAACAC+CGG | 0.681822 | 8:-11988758 | MsG0880042650.01.T01:CDS |
| GTACCTTTGATTACATGAGG+TGG | 0.683223 | 8:+11988123 | None:intergenic |
| TCCTCCGATGATATTTCCGG+CGG | 0.686578 | 8:+11989700 | None:intergenic |
| ACCGCCGGAAATATCATCGG+AGG | 0.686952 | 8:-11989701 | MsG0880042650.01.T01:CDS |
| GTTACGGCCTAAGAAAGCAG+TGG | 0.712363 | 8:+11989643 | None:intergenic |
| GATTTGGGAAATCCAGATGG+TGG | 0.729912 | 8:-11988631 | MsG0880042650.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGTTTATATGATTGT+AGG | - | Chr8:11988854-11988873 | MsG0880042650.01.T01:intron | 15.0% |
| !! | TAGTGATTATGTTAAATTAT+GGG | - | Chr8:11988497-11988516 | MsG0880042650.01.T01:intron | 15.0% |
| !! | TATGATGTTTATAATGATTT+GGG | - | Chr8:11989134-11989153 | MsG0880042650.01.T01:CDS | 15.0% |
| !! | TATTATGTGTAAATATCATT+AGG | - | Chr8:11988957-11988976 | MsG0880042650.01.T01:intron | 15.0% |
| !! | TTATGATGTTTATAATGATT+TGG | - | Chr8:11989133-11989152 | MsG0880042650.01.T01:CDS | 15.0% |
| !!! | AAGCTTTAGATTTTAAATTA+AGG | - | Chr8:11988828-11988847 | MsG0880042650.01.T01:intron | 15.0% |
| !!! | GAAATGTGTAATTTTTTTAT+AGG | + | Chr8:11988906-11988925 | None:intergenic | 15.0% |
| !! | CTAGTGATTATGTTAAATTA+TGG | - | Chr8:11988496-11988515 | MsG0880042650.01.T01:intron | 20.0% |
| !! | GCTAGTATATTATTGAATAT+TGG | + | Chr8:11988274-11988293 | None:intergenic | 20.0% |
| !! | TCTTCTCTATAATGATTTAA+TGG | + | Chr8:11989050-11989069 | None:intergenic | 20.0% |
| !! | TTAACATAATCACTAGAAAA+GGG | + | Chr8:11988492-11988511 | None:intergenic | 20.0% |
| !! | TTGGTTAATAAATTATGTCT+CGG | + | Chr8:11988255-11988274 | None:intergenic | 20.0% |
| !! | TTTAACATAATCACTAGAAA+AGG | + | Chr8:11988493-11988512 | None:intergenic | 20.0% |
| !!! | AAAATCACTGATTTAAACAA+AGG | + | Chr8:11989474-11989493 | None:intergenic | 20.0% |
| !!! | TGATGTACTTAATTTGTTTT+TGG | - | Chr8:11988416-11988435 | MsG0880042650.01.T01:CDS | 20.0% |
| !!! | TTTGAATATGATGCTAATTT+TGG | - | Chr8:11988637-11988656 | MsG0880042650.01.T01:CDS | 20.0% |
| ! | AAAGAGTTAGTAAAGATGTT+TGG | - | Chr8:11987947-11987966 | MsG0880042650.01.T01:CDS | 25.0% |
| ! | ATTCTTGACTAGGAAATTAA+TGG | + | Chr8:11988356-11988375 | None:intergenic | 25.0% |
| ! | ATTTGACTAAGTATATCTGT+AGG | + | Chr8:11989573-11989592 | None:intergenic | 25.0% |
| ! | CATGTAATAGCTTGAAAATT+TGG | + | Chr8:11988217-11988236 | None:intergenic | 25.0% |
| ! | GCTCAAAATAATTGTCAAAT+TGG | + | Chr8:11989783-11989802 | None:intergenic | 25.0% |
| ! | TAGCTATAATTGAATCGATT+TGG | + | Chr8:11989692-11989711 | None:intergenic | 25.0% |
| ! | TCAGTTTATTTGTAACTCAT+GGG | - | Chr8:11988753-11988772 | MsG0880042650.01.T01:CDS | 25.0% |
| ! | TGAAAACTTTATTCTTGACT+AGG | + | Chr8:11988366-11988385 | None:intergenic | 25.0% |
| ! | TTCAGTTTATTTGTAACTCA+TGG | - | Chr8:11988752-11988771 | MsG0880042650.01.T01:CDS | 25.0% |
| !! | AAATCTAAAGCTTACATCAT+TGG | + | Chr8:11988821-11988840 | None:intergenic | 25.0% |
| !! | AATTTTGTAGCAAATGGAAA+GGG | - | Chr8:11988529-11988548 | MsG0880042650.01.T01:intron | 25.0% |
| !! | ATTGAAGTCCAAAACATTTT+TGG | + | Chr8:11988023-11988042 | None:intergenic | 25.0% |
| !! | ATTTAATGTGTCCATTTTGT+AGG | - | Chr8:11989292-11989311 | MsG0880042650.01.T01:intron | 25.0% |
| !! | ATTTTTGCATGATAGTATTC+AGG | + | Chr8:11988328-11988347 | None:intergenic | 25.0% |
| !! | GTGATTTTATTCCATACATA+AGG | + | Chr8:11989434-11989453 | None:intergenic | 25.0% |
| !! | TAATTTTGTAGCAAATGGAA+AGG | - | Chr8:11988528-11988547 | MsG0880042650.01.T01:intron | 25.0% |
| !! | TTGAAGTCCAAAACATTTTT+GGG | + | Chr8:11988022-11988041 | None:intergenic | 25.0% |
| !! | TTTTTGCATGATAGTATTCA+GGG | + | Chr8:11988327-11988346 | None:intergenic | 25.0% |
| !!! | GTGTTTAATTTTGTAGCAAA+TGG | - | Chr8:11988523-11988542 | MsG0880042650.01.T01:intron | 25.0% |
| AAATTCACTAACTGCTACAA+CGG | + | Chr8:11989276-11989295 | None:intergenic | 30.0% | |
| ACTAATTGAGCAAAAACAAG+TGG | - | Chr8:11988385-11988404 | MsG0880042650.01.T01:CDS | 30.0% | |
| ATATGATTGTAGGAGAGTTT+AGG | - | Chr8:11988864-11988883 | MsG0880042650.01.T01:intron | 30.0% | |
| ATTAGAACGTTCCTACAAAA+TGG | + | Chr8:11989306-11989325 | None:intergenic | 30.0% | |
| ATTTGGTACTTACTTGAAGA+AGG | + | Chr8:11989884-11989903 | None:intergenic | 30.0% | |
| CTATAATGATTTAATGGAGC+CGG | + | Chr8:11989044-11989063 | None:intergenic | 30.0% | |
| GCAGATACTAAGAATACATT+TGG | + | Chr8:11989901-11989920 | None:intergenic | 30.0% | |
| TTTCTTATGTAAAATGCTCC+AGG | + | Chr8:11988667-11988686 | None:intergenic | 30.0% | |
| TTTGGCATCTTAAACAACAA+GGG | - | Chr8:11987965-11987984 | MsG0880042650.01.T01:CDS | 30.0% | |
| ! | AAATAAACTGAACCGATTCA+CGG | + | Chr8:11988744-11988763 | None:intergenic | 30.0% |
| ! | GTTCCAAGAGATGAAAATTT+TGG | - | Chr8:11989387-11989406 | MsG0880042650.01.T01:intron | 30.0% |
| ! | TGACCAAAATTTTCATCTCT+TGG | + | Chr8:11989393-11989412 | None:intergenic | 30.0% |
| ! | TTTTGTAGGAACGTTCTAAT+CGG | - | Chr8:11989306-11989325 | MsG0880042650.01.T01:intron | 30.0% |
| AACAAGGGCCAAAAAATCAA+GGG | - | Chr8:11987980-11987999 | MsG0880042650.01.T01:intron | 35.0% | |
| AGATATTCCTAACCGTGAAT+CGG | - | Chr8:11988729-11988748 | MsG0880042650.01.T01:CDS | 35.0% | |
| GCTGCTAATATATGCATGAA+AGG | + | Chr8:11989722-11989741 | None:intergenic | 35.0% | |
| GGTGCGAAAGATTTCTTTAA+GGG | + | Chr8:11989610-11989629 | None:intergenic | 35.0% | |
| GTTTGGCATCTTAAACAACA+AGG | - | Chr8:11987964-11987983 | MsG0880042650.01.T01:CDS | 35.0% | |
| TAGTACTAGAGAATGAAGCT+TGG | + | Chr8:11987896-11987915 | None:intergenic | 35.0% | |
| TCAAAGCTATCGAACTCATT+TGG | + | Chr8:11989513-11989532 | None:intergenic | 35.0% | |
| TCATCAGACTTCCTTATGTA+TGG | - | Chr8:11989420-11989439 | MsG0880042650.01.T01:intron | 35.0% | |
| TGAAGAATTTGGAAGAGAGA+TGG | - | Chr8:11989830-11989849 | MsG0880042650.01.T01:exon | 35.0% | |
| TGGATGACTGATGAAGAATT+TGG | - | Chr8:11989819-11989838 | MsG0880042650.01.T01:CDS | 35.0% | |
| ! | AATGATTTGGGAAATCCAGA+TGG | - | Chr8:11989146-11989165 | MsG0880042650.01.T01:CDS | 35.0% |
| ! | ATAAGTGCTACTAAGACTGA+TGG | - | Chr8:11988175-11988194 | MsG0880042650.01.T01:CDS | 35.0% |
| ! | ATTTCTTTAAGGGCTGGTAA+GGG | + | Chr8:11989600-11989619 | None:intergenic | 35.0% |
| ! | GGTAGTAAACTAACCTTTTC+TGG | + | Chr8:11989255-11989274 | None:intergenic | 35.0% |
| ! | GTTGATGCCCAAAAATGTTT+TGG | - | Chr8:11988012-11988031 | MsG0880042650.01.T01:intron | 35.0% |
| !! | ACTCATTTGGTGTGAAATTG+AGG | + | Chr8:11989500-11989519 | None:intergenic | 35.0% |
| !! | GTAAACTAACCTTTTCTGGT+TGG | + | Chr8:11989251-11989270 | None:intergenic | 35.0% |
| !!! | GATGCTAATTTTGGAATTCC+TGG | - | Chr8:11988646-11988665 | MsG0880042650.01.T01:CDS | 35.0% |
| AAAGAAATCTTTCGCACCGA+TGG | - | Chr8:11989612-11989631 | MsG0880042650.01.T01:CDS | 40.0% | |
| ACAAGGGCCAAAAAATCAAG+GGG | - | Chr8:11987981-11988000 | MsG0880042650.01.T01:intron | 40.0% | |
| AGAGCGCAAAGAATCAGATA+GGG | - | Chr8:11989103-11989122 | MsG0880042650.01.T01:CDS | 40.0% | |
| CAACAAGGGCCAAAAAATCA+AGG | - | Chr8:11987979-11987998 | MsG0880042650.01.T01:intron | 40.0% | |
| CATCATTGGTGAAGAAGATG+CGG | + | Chr8:11988807-11988826 | None:intergenic | 40.0% | |
| CGGTGCGAAAGATTTCTTTA+AGG | + | Chr8:11989611-11989630 | None:intergenic | 40.0% | |
| CTTCAAGAGTCACACTAACA+AGG | + | Chr8:11988711-11988730 | None:intergenic | 40.0% | |
| CTTCCTCAGTTACCAACTTT+GGG | - | Chr8:11988586-11988605 | MsG0880042650.01.T01:CDS | 40.0% | |
| CTTGGAACATAAATCACACC+CGG | + | Chr8:11989375-11989394 | None:intergenic | 40.0% | |
| GGTAGAAAACCAACCAGAAA+AGG | - | Chr8:11989239-11989258 | MsG0880042650.01.T01:CDS | 40.0% | |
| GTACCTTTGATTACATGAGG+TGG | + | Chr8:11989660-11989679 | None:intergenic | 40.0% | |
| GTATCTTCCAAGTCAAACAC+CGG | - | Chr8:11989022-11989041 | MsG0880042650.01.T01:CDS | 40.0% | |
| TCAACTGCATAGAGACGTTA+CGG | + | Chr8:11988156-11988175 | None:intergenic | 40.0% | |
| TCTTCCTCAGTTACCAACTT+TGG | - | Chr8:11988585-11988604 | MsG0880042650.01.T01:CDS | 40.0% | |
| TGAAGAAGGCGAATCACATT+AGG | + | Chr8:11989870-11989889 | None:intergenic | 40.0% | |
| ! | CGAAAGATTTCTTTAAGGGC+TGG | + | Chr8:11989606-11989625 | None:intergenic | 40.0% |
| ! | GAAGTACGTGATCTTTTCGA+AGG | - | Chr8:11989534-11989553 | MsG0880042650.01.T01:intron | 40.0% |
| ! | GAGGTACCTTTGATTACATG+AGG | + | Chr8:11989663-11989682 | None:intergenic | 40.0% |
| ! | GATTTCTTTAAGGGCTGGTA+AGG | + | Chr8:11989601-11989620 | None:intergenic | 40.0% |
| !! | AGAATGAAGCTTGGTGTAGT+AGG | + | Chr8:11987887-11987906 | None:intergenic | 40.0% |
| !! | TGAATCGATTTGGATGAACG+AGG | + | Chr8:11989682-11989701 | None:intergenic | 40.0% |
| AATAACACCGCCTTTACCGA+CGG | + | Chr8:11988056-11988075 | None:intergenic | 45.0% | |
| AATATCATCGGAGGAGTCAC+CGG | - | Chr8:11988088-11988107 | MsG0880042650.01.T01:intron | 45.0% | |
| AGATCCTAAGAGTGAGAAGC+CGG | - | Chr8:11989353-11989372 | MsG0880042650.01.T01:intron | 45.0% | |
| CAAGGGCCAAAAAATCAAGG+GGG | - | Chr8:11987982-11988001 | MsG0880042650.01.T01:intron | 45.0% | |
| CCACCACCTCATGTAATCAA+AGG | - | Chr8:11989654-11989673 | MsG0880042650.01.T01:CDS | 45.0% | |
| CCTTTGATTACATGAGGTGG+TGG | + | Chr8:11989657-11989676 | None:intergenic | 45.0% | |
| GAAGAGTTGCAGACTCTAAG+AGG | - | Chr8:11989068-11989087 | MsG0880042650.01.T01:CDS | 45.0% | |
| GACTCCTCCGATGATATTTC+CGG | + | Chr8:11988086-11988105 | None:intergenic | 45.0% | |
| GATTTGGGAAATCCAGATGG+TGG | - | Chr8:11989149-11989168 | MsG0880042650.01.T01:CDS | 45.0% | |
| GCAAATGGAAAGGGTCTAGT+TGG | - | Chr8:11988538-11988557 | MsG0880042650.01.T01:intron | 45.0% | |
| TCTTGTCTTGCTCCCAAAGT+TGG | + | Chr8:11988601-11988620 | None:intergenic | 45.0% | |
| TGGAAAGGGTCTAGTTGGAA+AGG | - | Chr8:11988543-11988562 | MsG0880042650.01.T01:CDS | 45.0% | |
| TTCAATGCCATAACGTCCGT+CGG | - | Chr8:11988037-11988056 | MsG0880042650.01.T01:intron | 45.0% | |
| TTTGGAAGAGAGATGGTTGC+TGG | - | Chr8:11989837-11989856 | MsG0880042650.01.T01:exon | 45.0% | |
| ! | AACTGAACCGATTCACGGTT+AGG | + | Chr8:11988739-11988758 | None:intergenic | 45.0% |
| ! | ACTCTAAGAGGAGATGGAAC+TGG | - | Chr8:11989080-11989099 | MsG0880042650.01.T01:CDS | 45.0% |
| ! | CTTGAGGACTTGTTCACCAT+CGG | + | Chr8:11989631-11989650 | None:intergenic | 45.0% |
| ! | GAGAGCGCAAAGAATCAGAT+AGG | - | Chr8:11989102-11989121 | MsG0880042650.01.T01:CDS | 45.0% |
| ! | GTACGTGATCTTTTCGAAGG+TGG | - | Chr8:11989537-11989556 | MsG0880042650.01.T01:intron | 45.0% |
| ! | TTGCAGACTCTAAGAGGAGA+TGG | - | Chr8:11989074-11989093 | MsG0880042650.01.T01:CDS | 45.0% |
| !!! | TTGATAAATTATAAAAATTT+TGG | - | Chr8:11988926-11988945 | MsG0880042650.01.T01:intron | 5.0% |
| AACAACTCCGCCAACAATGC+CGG | + | Chr8:11988110-11988129 | None:intergenic | 50.0% | |
| AATGGAGCCGGTGTTTGACT+TGG | + | Chr8:11989032-11989051 | None:intergenic | 50.0% | |
| ATAACGTCCGTCGGTAAAGG+CGG | - | Chr8:11988046-11988065 | MsG0880042650.01.T01:intron | 50.0% | |
| CCAAAAAATCAAGGGGGCTG+TGG | - | Chr8:11987988-11988007 | MsG0880042650.01.T01:intron | 50.0% | |
| GACACCGCCGGAAATATCAT+CGG | - | Chr8:11988076-11988095 | MsG0880042650.01.T01:intron | 50.0% | |
| GACACTGCCACTGCTTTCTT+AGG | - | Chr8:11988130-11988149 | MsG0880042650.01.T01:CDS | 50.0% | |
| GAGCAGTTAGCAAGTCTGCA+TGG | - | Chr8:11989799-11989818 | MsG0880042650.01.T01:CDS | 50.0% | |
| GATAAGTGCTAGATCCCCCA+AGG | + | Chr8:11989196-11989215 | None:intergenic | 50.0% | |
| GATCCTAAGAGTGAGAAGCC+GGG | - | Chr8:11989354-11989373 | MsG0880042650.01.T01:intron | 50.0% | |
| GTTACGGCCTAAGAAAGCAG+TGG | + | Chr8:11988140-11988159 | None:intergenic | 50.0% | |
| TACCACTTCTAACCCTGCGA+GGG | + | Chr8:11989223-11989242 | None:intergenic | 50.0% | |
| TCCTCCGATGATATTTCCGG+CGG | + | Chr8:11988083-11988102 | None:intergenic | 50.0% | |
| !! | CATGAGGTGGTGGAAACTTG+AGG | + | Chr8:11989647-11989666 | None:intergenic | 50.0% |
| !! | GCTCCCAAAGTTGGTAACTG+AGG | + | Chr8:11988592-11988611 | None:intergenic | 50.0% |
| !!! | CCACAGCCCCCTTGATTTTT+TGG | + | Chr8:11987991-11988010 | None:intergenic | 50.0% |
| ACAAGTGCGTCACCACCATC+TGG | + | Chr8:11989164-11989183 | None:intergenic | 55.0% | |
| ACACCCGGCTTCTCACTCTT+AGG | + | Chr8:11989360-11989379 | None:intergenic | 55.0% | |
| ACCGCCGGAAATATCATCGG+AGG | - | Chr8:11988079-11988098 | MsG0880042650.01.T01:intron | 55.0% | |
| ACTTCTAACCCTGCGAGGGT+AGG | + | Chr8:11989219-11989238 | None:intergenic | 55.0% | |
| ACTTGTCCGACCAGTCCTTG+GGG | - | Chr8:11989178-11989197 | MsG0880042650.01.T01:CDS | 55.0% | |
| CACTTATCCCTACCCTCGCA+GGG | - | Chr8:11989208-11989227 | MsG0880042650.01.T01:CDS | 55.0% | |
| CACTTGTCCGACCAGTCCTT+GGG | - | Chr8:11989177-11989196 | MsG0880042650.01.T01:CDS | 55.0% | |
| CTACCACTTCTAACCCTGCG+AGG | + | Chr8:11989224-11989243 | None:intergenic | 55.0% | |
| CTTCTAACCCTGCGAGGGTA+GGG | + | Chr8:11989218-11989237 | None:intergenic | 55.0% | |
| GCCATAACGTCCGTCGGTAA+AGG | - | Chr8:11988043-11988062 | MsG0880042650.01.T01:intron | 55.0% | |
| GCCTTTACCGACGGACGTTA+TGG | + | Chr8:11988047-11988066 | None:intergenic | 55.0% | |
| TACCCTCGCAGGGTTAGAAG+TGG | - | Chr8:11989218-11989237 | MsG0880042650.01.T01:CDS | 55.0% | |
| ! | TAGATCCCCCAAGGACTGGT+CGG | + | Chr8:11989187-11989206 | None:intergenic | 55.0% |
| CTTGTCCGACCAGTCCTTGG+GGG | - | Chr8:11989179-11989198 | MsG0880042650.01.T01:CDS | 60.0% | |
| GCACTTATCCCTACCCTCGC+AGG | - | Chr8:11989207-11989226 | MsG0880042650.01.T01:CDS | 60.0% | |
| GCACTTGTCCGACCAGTCCT+TGG | - | Chr8:11989176-11989195 | MsG0880042650.01.T01:CDS | 60.0% | |
| GGAGGAGTCACCGGCATTGT+TGG | - | Chr8:11988097-11988116 | MsG0880042650.01.T01:intron | 60.0% | |
| GGAGTCACCGGCATTGTTGG+CGG | - | Chr8:11988100-11988119 | MsG0880042650.01.T01:intron | 60.0% | |
| GTGCTAGATCCCCCAAGGAC+TGG | + | Chr8:11989191-11989210 | None:intergenic | 60.0% | |
| !! | GGCGGTGTTATTGACACCGC+CGG | - | Chr8:11988064-11988083 | MsG0880042650.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 11987879 | 11989923 | 11987879 | ID=MsG0880042650.01;Name=MsG0880042650.01 |
| Chr8 | mRNA | 11987879 | 11989923 | 11987879 | ID=MsG0880042650.01.T01;Parent=MsG0880042650.01;Name=MsG0880042650.01.T01;_AED=0.46;_eAED=0.47;_QI=83|1|0.8|1|1|1|5|0|400 |
| Chr8 | exon | 11987879 | 11987997 | 11987879 | ID=MsG0880042650.01.T01:exon:13270;Parent=MsG0880042650.01.T01 |
| Chr8 | exon | 11988127 | 11988447 | 11988127 | ID=MsG0880042650.01.T01:exon:13269;Parent=MsG0880042650.01.T01 |
| Chr8 | exon | 11988542 | 11988782 | 11988542 | ID=MsG0880042650.01.T01:exon:13268;Parent=MsG0880042650.01.T01 |
| Chr8 | exon | 11988977 | 11989263 | 11988977 | ID=MsG0880042650.01.T01:exon:13267;Parent=MsG0880042650.01.T01 |
| Chr8 | exon | 11989606 | 11989923 | 11989606 | ID=MsG0880042650.01.T01:exon:13266;Parent=MsG0880042650.01.T01 |
| Chr8 | five_prime_UTR | 11989841 | 11989923 | 11989841 | ID=MsG0880042650.01.T01:five_prime_utr;Parent=MsG0880042650.01.T01 |
| Chr8 | CDS | 11989606 | 11989840 | 11989606 | ID=MsG0880042650.01.T01:cds;Parent=MsG0880042650.01.T01 |
| Chr8 | CDS | 11988977 | 11989263 | 11988977 | ID=MsG0880042650.01.T01:cds;Parent=MsG0880042650.01.T01 |
| Chr8 | CDS | 11988542 | 11988782 | 11988542 | ID=MsG0880042650.01.T01:cds;Parent=MsG0880042650.01.T01 |
| Chr8 | CDS | 11988127 | 11988447 | 11988127 | ID=MsG0880042650.01.T01:cds;Parent=MsG0880042650.01.T01 |
| Chr8 | CDS | 11987879 | 11987997 | 11987879 | ID=MsG0880042650.01.T01:cds;Parent=MsG0880042650.01.T01 |
| Gene Sequence |
| Protein sequence |
