AlfalfaGEDB | MsG0880042973.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042973.01

KEGG: -
GO: GO:0003677 GO:0006355
PFAM: PF02701

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042973.01.T01	XP_024629469.1	96.774	93	3	0	1	93	1	93	9.73E-59	191

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042973.01.T01	Q43385	83.562	73	12	0	16	88	66	138	6.61E-40	136

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042973.01.T01	A0A072TM78	96.774	93	3	0	1	93	1	93	4.65e-59	191

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000555.01	MsG0880042973.01	0.800804	1.213618e-48	5.703535e-46
MsG0180000585.01	MsG0880042973.01	0.804511	2.086149e-49	1.077584e-46
MsG0180000741.01	MsG0880042973.01	0.800014	1.757614e-48	8.096214e-46
MsG0180001117.01	MsG0880042973.01	0.801640	8.183871e-49	3.928237e-46
MsG0180001178.01	MsG0880042973.01	0.824379	8.334210e-54	7.369479e-51
MsG0180001565.01	MsG0880042973.01	0.849354	3.413419e-60	6.454000e-57
MsG0180001566.01	MsG0880042973.01	0.809205	2.123304e-50	1.238980e-47
MsG0180004139.01	MsG0880042973.01	0.825930	3.582699e-54	3.311828e-51
MsG0180004147.01	MsG0880042973.01	0.803269	3.778659e-49	1.890610e-46
MsG0180004320.01	MsG0880042973.01	0.800978	1.118367e-48	5.279587e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042973.01.T01	MTR_8g027295	96.774	93	3	0	1	93	1	93	1.18e-62	191
MsG0880042973.01.T01	MTR_3g091820	79.012	81	14	2	1	78	17	97	3.26e-39	132
MsG0880042973.01.T01	MTR_1g077600	73.171	82	18	2	1	78	16	97	1.69e-37	127
MsG0880042973.01.T01	MTR_1g077600	73.171	82	18	2	1	78	16	97	1.85e-37	127
MsG0880042973.01.T01	MTR_2g093220	75.000	72	16	1	9	78	23	94	4.11e-34	119
MsG0880042973.01.T01	MTR_8g479350	75.806	62	15	0	21	82	65	126	2.77e-31	112
MsG0880042973.01.T01	MTR_8g068210	65.060	83	26	2	15	95	21	102	3.39e-31	112
MsG0880042973.01.T01	MTR_4g063780	72.059	68	19	0	11	78	62	129	1.55e-30	110
MsG0880042973.01.T01	MTR_3g090430	76.562	64	13	1	17	78	42	105	4.30e-30	109
MsG0880042973.01.T01	MTR_4g461080	69.014	71	20	1	8	76	11	81	4.80e-30	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042973.01.T01	AT3G61850	83.562	73	12	0	16	88	54	126	5.13e-41	136
MsG0880042973.01.T01	AT3G61850	83.562	73	12	0	16	88	54	126	5.13e-41	136
MsG0880042973.01.T01	AT3G61850	83.562	73	12	0	16	88	66	138	6.74e-41	136
MsG0880042973.01.T01	AT3G61850	83.562	73	12	0	16	88	54	126	9.01e-41	136
MsG0880042973.01.T01	AT3G61850	83.562	73	12	0	16	88	66	138	9.89e-41	136
MsG0880042973.01.T01	AT4G24060	83.824	68	9	1	13	78	40	107	8.98e-37	127
MsG0880042973.01.T01	AT4G00940	87.302	63	8	0	18	80	62	124	4.59e-36	124
MsG0880042973.01.T01	AT4G00940	87.302	63	8	0	18	80	62	124	4.59e-36	124
MsG0880042973.01.T01	AT4G00940	87.302	63	8	0	18	80	62	124	4.59e-36	124
MsG0880042973.01.T01	AT2G46590	92.982	57	4	0	15	71	59	115	8.99e-36	124

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Find 21 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGCAAATAAATTGTCCA+AGG	0.610950	8:-16868592	MsG0880042973.01.T01:CDS
AAGGATTAGAGAAGAAAGCA+AGG	0.621824	8:-16868619	MsG0880042973.01.T01:CDS
AGAAATGTTCCTGTTGGAGG+TGG	0.521904	8:-16868461	MsG0880042973.01.T01:CDS
AGAAGGTATTGGACTGAAGG+AGG	0.618740	8:-16868491	MsG0880042973.01.T01:CDS
AGGGTAGGTGGATTTAGGTC+AGG	0.459379	8:+16868375	None:intergenic
AGGTATATATACTCATGGAA+GGG	0.656170	8:-16868667	None:intergenic
CATGTCTTGCAAAAGTATCT+TGG	0.386535	8:+16868515	None:intergenic
CCTAATTCATGTCCAAGGCA+AGG	0.615681	8:-16868638	MsG0880042973.01.T01:CDS
CCTTGCCTTGGACATGAATT+AGG	0.219906	8:+16868638	None:intergenic
CTAAGAAATGTTCCTGTTGG+AGG	0.487652	8:-16868464	MsG0880042973.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGCAAATAAATTGTCCA+AGG	-	Chr8:16868449-16868468	MsG0880042973.01.T01:CDS	30.0%
TGATGAACTATTATTAGGTG+TGG	+	Chr8:16868641-16868660	None:intergenic	30.0%
AAGGATTAGAGAAGAAAGCA+AGG	-	Chr8:16868422-16868441	MsG0880042973.01.T01:CDS	35.0%
GGACAATTTATTTGCTCTTG+TGG	+	Chr8:16868448-16868467	None:intergenic	35.0%
CTAAGAAATGTTCCTGTTGG+AGG	-	Chr8:16868577-16868596	MsG0880042973.01.T01:CDS	40.0%
TAGCTCCTAATTCATGTCCA+AGG	-	Chr8:16868398-16868417	MsG0880042973.01.T01:CDS	40.0%
TTAGGTGTGGCTAATGATGA+AGG	+	Chr8:16868628-16868647	None:intergenic	40.0%
TTCTTCTCTAATCCTTGCCT+TGG	+	Chr8:16868418-16868437	None:intergenic	40.0%
AGAAATGTTCCTGTTGGAGG+TGG	-	Chr8:16868580-16868599	MsG0880042973.01.T01:CDS	45.0%
CCTAATTCATGTCCAAGGCA+AGG	-	Chr8:16868403-16868422	MsG0880042973.01.T01:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	16868388	16868675	16868388	ID=MsG0880042973.01;Name=MsG0880042973.01
Chr8	mRNA	16868388	16868675	16868388	ID=MsG0880042973.01.T01;Parent=MsG0880042973.01;Name=MsG0880042973.01.T01;_AED=0.43;_eAED=0.43;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|95
Chr8	exon	16868388	16868675	16868388	ID=MsG0880042973.01.T01:exon:3257;Parent=MsG0880042973.01.T01
Chr8	CDS	16868388	16868675	16868388	ID=MsG0880042973.01.T01:cds;Parent=MsG0880042973.01.T01

Gene Sequence	>MsG0880042973.01.T01 ATGGAAGGGTTAGCTCCTAATTCATGTCCAAGGCAAGGATTAGAGAAGAAAGCAAGGCCACAAGAGCAAATAAATTGTCCAAGGTGCAATTCAACAAACACAAAATTTTGTTATTACAACAACTACAGTCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCTGTTGGAGGTGGTTCAAGAAAGAACAAGAAAATTCCTTCATCATTAGCCACACCTAATAATAGTTCATCAAAATTCCTGACCTAA
Protein sequence	>MsG0880042973.01.T01 MEGLAPNSCPRQGLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIPSSLATPNNSSSKFLT*