AlfalfaGEDB | MsG0180001565.01

M. sativa cultivar ZhongmuNo.1 / MsG0180001565.01

KEGG: -
GO: GO:0003774 GO:0003777 GO:0005515 GO:0005524 GO:0007018 GO:0008017 GO:0016459
PFAM: PF00063 PF00612

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001565.01.T01	XP_020239752.1	82.991	1217	129	7	1	1184	1	1172	0	2050

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001565.01.T01	Q9LHE9	71.23	1220	256	14	3	1182	1	1165	0	1718

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001565.01.T01	A0A396JJI1	91.157	1210	39	3	3	1184	1	1170	0.0	2247

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0180001565.01	0.831987	1.222078e-55	1.347957e-52
MsG0080047825.01	MsG0180001565.01	0.804367	2.234712e-49	1.150141e-46
MsG0080048058.01	MsG0180001565.01	0.824211	9.125443e-54	8.030788e-51
MsG0080048461.01	MsG0180001565.01	0.809451	1.879843e-50	1.104077e-47
MsG0080048700.01	MsG0180001565.01	0.834787	2.449019e-56	2.936506e-53
MsG0080048765.01	MsG0180001565.01	0.839849	1.239019e-57	1.732845e-54
MsG0080048829.01	MsG0180001565.01	0.810127	1.345464e-50	8.044157e-48
MsG0080048856.01	MsG0180001565.01	0.805756	1.144685e-49	6.106087e-47
MsG0080048928.01	MsG0180001565.01	0.802959	4.379359e-49	2.173861e-46
MsG0080048952.01	MsG0180001565.01	0.837250	5.805559e-57	7.497110e-54

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0180001565.01.T01	MTR_1g038793	91.142	1208	42	3	3	1184	1	1169	2243
MsG0180001565.01.T01	MTR_1g114540	76.500	1217	195	7	1	1184	1	1159	1864
MsG0180001565.01.T01	MTR_2g081070	52.560	1172	422	18	81	1180	91	1200	1130
MsG0180001565.01.T01	MTR_8g464480	50.266	1126	440	15	115	1182	114	1177	1041
MsG0180001565.01.T01	MTR_3g105200	40.205	878	417	19	122	950	4	822	601
MsG0180001565.01.T01	MTR_3g105200	40.205	878	417	19	122	950	4	822	601
MsG0180001565.01.T01	MTR_1g015620	40.373	857	412	22	136	950	18	817	587
MsG0180001565.01.T01	MTR_4g125690	40.835	862	418	19	128	949	14	823	585
MsG0180001565.01.T01	MTR_1g037500	39.699	864	426	19	128	949	14	824	584
MsG0180001565.01.T01	MTR_7g115430	39.030	866	430	19	128	950	14	824	575

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0180001565.01.T01	AT3G19960	71.230	1220	256	14	3	1182	1	1165	1718
MsG0180001565.01.T01	AT3G19960	71.230	1220	256	14	3	1182	1	1165	1718
MsG0180001565.01.T01	AT3G19960	71.230	1220	256	14	3	1182	1	1165	1718
MsG0180001565.01.T01	AT1G50360	69.053	1215	278	13	3	1182	1	1152	1665
MsG0180001565.01.T01	AT3G19960	68.097	1235	279	18	3	1182	1	1175	1612
MsG0180001565.01.T01	AT3G19960	71.243	925	181	9	3	894	1	873	1308
MsG0180001565.01.T01	AT5G54280	51.189	1135	425	13	110	1178	148	1219	1119
MsG0180001565.01.T01	AT5G54280	51.648	1092	398	14	153	1178	2	1029	1076
MsG0180001565.01.T01	AT4G27370	50.000	1120	434	16	107	1179	95	1135	1045
MsG0180001565.01.T01	AT4G27370	50.000	1120	434	16	107	1179	95	1135	1045

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Find 257 sgRNAs with CRISPR-Local

Find 751 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGAAACAAGACTGTT+TGG	0.373096	1:+23324927	MsG0180001565.01.T01:CDS
AAAGATAGCAATGCAGTACT+TGG	0.481751	1:+23325733	MsG0180001565.01.T01:CDS
AAATGAGGGTAAGAAATTTA+CGG	0.393121	1:+23328689	MsG0180001565.01.T01:CDS
AAATTGATTATAAATAAACT+TGG	0.484625	1:+23333906	MsG0180001565.01.T01:CDS
AACACCTTATGTTTCGAAGA+AGG	0.482329	1:+23322906	MsG0180001565.01.T01:CDS
AACAGAGTCGGATGAGATTC+TGG	0.404107	1:+23333341	MsG0180001565.01.T01:CDS
AACGTCACAGCCAATCAATT+CGG	0.471149	1:-23329025	None:intergenic
AAGAGCTATAATGCAAAACT+TGG	0.603907	1:+23334329	MsG0180001565.01.T01:three_prime_UTR
AAGCTTGGAAAAGGGATTAC+GGG	0.418662	1:+23333865	MsG0180001565.01.T01:CDS
AAGTGTTGCAACAAAATTCA+AGG	0.492608	1:+23330893	MsG0180001565.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGATTCAATGTAAGGG+AGG	-	Chr1:23328977-23328996	None:intergenic	30.0%
AAAAGTGAAACAAGACTGTT+TGG	+	Chr1:23324927-23324946	MsG0180001565.01.T01:CDS	30.0%
AAAATGAAGAAAAAGTGGTG+GGG	+	Chr1:23333951-23333970	MsG0180001565.01.T01:CDS	30.0%
AAACACAATACACATCTAAG+GGG	-	Chr1:23325639-23325658	None:intergenic	30.0%
AAGAGCTATAATGCAAAACT+TGG	+	Chr1:23334329-23334348	MsG0180001565.01.T01:three_prime_UTR	30.0%
AATATAATAGATACCGACCT+AGG	+	Chr1:23329755-23329774	MsG0180001565.01.T01:intron	30.0%
AATATGACATATCGGAATTG+GGG	-	Chr1:23323876-23323895	None:intergenic	30.0%
AATATGGGAAGTAAAACACT+TGG	-	Chr1:23332972-23332991	None:intergenic	30.0%
AATGCTACATATATTTGCAG+AGG	+	Chr1:23329583-23329602	MsG0180001565.01.T01:intron	30.0%
AATGTCTACTGATATAATGC+GGG	-	Chr1:23326257-23326276	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	23322559	23334497	23322559	ID=MsG0180001565.01;Name=MsG0180001565.01
Chr1	mRNA	23322559	23334497	23322559	ID=MsG0180001565.01.T01;Parent=MsG0180001565.01;Name=MsG0180001565.01.T01;_AED=0.35;_eAED=0.36;_QI=0\|0.2\|0.19\|1\|0.9\|0.90\|21\|496\|1184
Chr1	exon	23322559	23322927	23322559	ID=MsG0180001565.01.T01:exon:40440;Parent=MsG0180001565.01.T01
Chr1	exon	23324725	23324826	23324725	ID=MsG0180001565.01.T01:exon:40441;Parent=MsG0180001565.01.T01
Chr1	exon	23324922	23325065	23324922	ID=MsG0180001565.01.T01:exon:40442;Parent=MsG0180001565.01.T01
Chr1	exon	23325182	23325332	23325182	ID=MsG0180001565.01.T01:exon:40443;Parent=MsG0180001565.01.T01
Chr1	exon	23325449	23325476	23325449	ID=MsG0180001565.01.T01:exon:40444;Parent=MsG0180001565.01.T01
Chr1	exon	23325700	23325865	23325700	ID=MsG0180001565.01.T01:exon:40445;Parent=MsG0180001565.01.T01
Chr1	exon	23325998	23326082	23325998	ID=MsG0180001565.01.T01:exon:40446;Parent=MsG0180001565.01.T01
Chr1	exon	23328324	23328427	23328324	ID=MsG0180001565.01.T01:exon:40447;Parent=MsG0180001565.01.T01
Chr1	exon	23328558	23328744	23328558	ID=MsG0180001565.01.T01:exon:40448;Parent=MsG0180001565.01.T01
Chr1	exon	23328944	23329128	23328944	ID=MsG0180001565.01.T01:exon:40449;Parent=MsG0180001565.01.T01
Chr1	exon	23329340	23329492	23329340	ID=MsG0180001565.01.T01:exon:40450;Parent=MsG0180001565.01.T01
Chr1	exon	23329603	23329692	23329603	ID=MsG0180001565.01.T01:exon:40451;Parent=MsG0180001565.01.T01
Chr1	exon	23329819	23329896	23329819	ID=MsG0180001565.01.T01:exon:40452;Parent=MsG0180001565.01.T01
Chr1	exon	23330359	23330517	23330359	ID=MsG0180001565.01.T01:exon:40453;Parent=MsG0180001565.01.T01
Chr1	exon	23330708	23330914	23330708	ID=MsG0180001565.01.T01:exon:40454;Parent=MsG0180001565.01.T01
Chr1	exon	23331377	23331582	23331377	ID=MsG0180001565.01.T01:exon:40455;Parent=MsG0180001565.01.T01
Chr1	exon	23331714	23331846	23331714	ID=MsG0180001565.01.T01:exon:40456;Parent=MsG0180001565.01.T01
Chr1	exon	23331941	23332070	23331941	ID=MsG0180001565.01.T01:exon:40457;Parent=MsG0180001565.01.T01
Chr1	exon	23332163	23332309	23332163	ID=MsG0180001565.01.T01:exon:40458;Parent=MsG0180001565.01.T01
Chr1	exon	23333136	23333203	23333136	ID=MsG0180001565.01.T01:exon:40459;Parent=MsG0180001565.01.T01
Chr1	exon	23333339	23334497	23333339	ID=MsG0180001565.01.T01:exon:40460;Parent=MsG0180001565.01.T01
Chr1	CDS	23322559	23322927	23322559	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23324725	23324826	23324725	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23324922	23325065	23324922	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23325182	23325332	23325182	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23325449	23325476	23325449	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23325700	23325865	23325700	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23325998	23326082	23325998	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23328324	23328427	23328324	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23328558	23328744	23328558	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23328944	23329128	23328944	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23329340	23329492	23329340	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23329603	23329692	23329603	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23329819	23329896	23329819	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23330359	23330517	23330359	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23330708	23330914	23330708	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23331377	23331582	23331377	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23331714	23331846	23331714	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23331941	23332070	23331941	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23332163	23332309	23332163	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23333136	23333203	23333136	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	CDS	23333339	23334001	23333339	ID=MsG0180001565.01.T01:cds;Parent=MsG0180001565.01.T01
Chr1	three_prime_UTR	23334002	23334497	23334002	ID=MsG0180001565.01.T01:three_prime_utr;Parent=MsG0180001565.01.T01

Gene Sequence

>MsG0180001565.01.T01

ATGTCTATGGGATCAAAGATTCTTCCTTCTCTCCAGCCTATCAAATCATTGCCTCCTGGTTTCAAGGTTAACGGTAATCTGACCCGTGATATAATGGAAAGCCGGGGAGATGCTAAATTGAGAAGCAGCGGTTTGGTTGGATCAAGCAGTCCTGAAAATGATGATCTTTTTGAAGAAGCTCAAGACAGTGCCGGTGGCATGGGTCTTTTCAATGAGGACATAGCGTATAGTGGAAAATCTGTATTATTAGAAGACAGGGAATCTATTGTTGATGAAGGTTTGGAATTTGTTCCTCTCCCCTTCCAATCAGTTTCAGTGTCTTCTAGGGAATCTAGGTGGAGTGATACAACACCTTATGTTTCGAAGAAGAAACTTCAGTCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGCAAATATAATAAAAACTTCTGGAACAGAATCTGTTATTTCATTGCCAGATGGGAAGGTTTTAAAAGTGAAACAAGACTGTTTGGTATCGGCAAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAACGAACCGTCAGTTTTATACGATCTACAGTATAGATACAATCAAAATATGATTTATACAAAAGCGGGGCCTGTTTTGGTTGCTGTAAATCCTTTCAAGAAAGTTCCTTTGTATGGTAACAATTATATTGAAGCCTACAAACGTAAAGCAACTGAAAGCCCTCATGTATATGCAATTACAGACACAGCCATCCGAGAAATGATACGAGATGAAGTTAATCAGTCTATAATTATAAGTGGTGAGAGTGGAGCTGGAAAGACAGAGACAGCAAAGATAGCAATGCAGTACTTGGCTGCTCTTGGAGGTGGAAGTGGAATAGAGTATGAGATATTAAAGACTAATCCAATACTCGAAGCCTTTGGTAATGCAAAAACTTTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATACACTTCAGTGAAACTGGAAAAATTTCTGGCGCTAATATTCAAACATGTAGGTTTTTGCTGTTTAGTGAGAAGCTCAACCTACAAAATGCAGAAGATTATAAATATTTGAAGCAGAGCAATTGTTATTCAATTACTGGTGTTAATGATGCAGAAGAATTTCGCATGGTCATGGAAGCTCTTAATGTTGTCCACATCAGTAAAGAAGATCAAGAGACTGTATTTGCTATGCTTGCTGCAGTATTATGGTTCGGGAACATATCATTTACTGTCATTGATAATGAAAACCATGTTCAAGCTGTTGAAAATGAGGGTAAGAAATTTACGGAACCACTACTGAATGAATGCATGCTTCTTTTAATTGCTTTCAAACGTTTCAAGTTATTCAATACCTCCCTTACATTGAATCTTTTTCTTACTTCTAAAGGGTTGTTCCACGTCGCCGAATTGATTGGCTGTGACGTTGAAGATCTCAAGTTGACTCTATCAACTCGCAAAATGAAAGTTGGGAATGATAATATTGTCCAAAAGTTGACACAATCACAGGCAATTGATGCAAGAGATGCTTTGGCCAAGTCTATATATTCATGCCTGTTTGATTGGTTGGTTGAACAAATAAATAAATCACTTGCTGTTGGCAAAAGGTGTACCGGCAGATCAATCAGTATTCTAGATATATATGGCTTTGAATCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAAAGATTGCAGCAACACTTCAATCGTCATTTATTCAAGTTAGAGCAGGAGGAATATATTCAAGATGGCATTGACTGGGCTAAGGTTGAATTTGAAGACAATCAAGACTGCCTTAATCTTTTTGAGAAGAGACCACTGGGATTGTTATCTCTGCTAGATGAAGAGTCCACTTTCCCAAATGGCACAGATTTGACATTTGCCAACAAGCTTAAACAGCATTTAAATTCCAAATCATGTTTCAAAGGAGAAAGAGACCAAGCCTTTACTGTGTGTCATTATGCTGGAGAGGTCACATATGATACAACTGGGTTTCTGGAGAAGAATAGGGACCTATTGCACTTGGATTCCATCCAACTTCTATCGTCATGCACATGTCATCTTCCTCAAATATTTGCATCTCATATGCTTACACAGTCTGAAAAGCCAGTAGTTGGTCCTTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGGGTCAGCTGTTCCAACTGATGCAACGCTTAGAGAGCACAACTCCACATTTTATTCGCTGCATTAAGCCCAATAATCTCCAATCGCCTGAAACATATGAACAAGGACTTGTACTACAACAGCTGAGGTGCTGTGGGGTGCTGGAAGTGGTTCGAATATCAAGATCCGGCTTTCCAACAAGAATGTCTCACCAAAAGTTCGCCAGAAGATATGGCTTTCTCCTTGATAATGCTGCATCACAGGATCCACTTAGTGTTTCAGTTTCAATTCTTCATCAATTTAATATTTTGCCTGAGATGTTTCAAGTTGGCTACACAAAGTTATTTTTCAGAACAGGGCAGATTGGTGTGCTTGAAGATACAAGAAATCGTACCCTTCATGGCATCTTACGTGTCCAAAGTTGCTTTAGGGGTTACCAAGCTCGTCGTTCCCTCAAGAAGCTTCAAGGAGGAATCTCTACTTTGCAGTCATTTATTCGGGGACAGAAAACGAGAAAGGCATATGCTGCTTTACTTCAGAGACATAGAGCTGCTATTATTATACAGAAGTGGACAAAAGCAATGGTAGTAAGAAACAGAACAGGGACTATCAGAGATGCTGCAGTTGTCATACAATCAGTCATTCGGGGATGGTTGGTCAGAAGATGCTCAGGAGATATTGGATTTTCGAAACACGGGGACATGAAGACAACAGAGTCGGATGAGATTCTGGTCAAGTCATCTTTCCTGGCTGAATTGCAGCGCCGGGTACTTAAGGCCGAAGCTGCTCTGAGAGAGAAAGATGAGGAAAATGACATCCTTAACCAACGTATCCAACAATACGAGAACAGATGGTCTGAATACGAGTTGAAGATGAAATCCATGGAAGACGTGTGGCAGAAACAAATGAGATCACTTCAATCTAGCCTCTCCATTGCTAAGAAGAGCCTTGCTATTGATGACTCTGACAGAAATTCAGATGCATCTGTTAATAATACAAGCGATGAGCGTGATTACAGCTGGGATGTGGGAAGTAATCACAGGCGCCAAGAAAGCAACGGAACAAGATCAACAAGTGCTAGTTTGAGCGTTATAAGTCGGCTTGCTGAAGAATTTGAGCAAAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTAGTTGAGGTGAAATCTGGTCAAGCAGAAGCAAGTTTGAATCCAGATCAAGAACTTAGAAGGCTAAAACAGATGTTTGAAGCTTGGAAAAGGGATTACGGGGCAAGATTGCGTGAAACAAAATTGATTATAAATAAACTTGGAACTGAAGACAGTGCACTTGAAAAAATGAAGAAAAAGTGGTGGGGAAGAAGGAATAGTACAAGGATAAATTGA

Protein sequence

>MsG0180001565.01.T01

MSMGSKILPSLQPIKSLPPGFKVNGNLTRDIMESRGDAKLRSSGLVGSSSPENDDLFEEAQDSAGGMGLFNEDIAYSGKSVLLEDRESIVDEGLEFVPLPFQSVSVSSRESRWSDTTPYVSKKKLQSWFQLPNGNWELANIIKTSGTESVISLPDGKVLKVKQDCLVSANPDILDGVDDLMQLSYLNEPSVLYDLQYRYNQNMIYTKAGPVLVAVNPFKKVPLYGNNYIEAYKRKATESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCRFLLFSEKLNLQNAEDYKYLKQSNCYSITGVNDAEEFRMVMEALNVVHISKEDQETVFAMLAAVLWFGNISFTVIDNENHVQAVENEGKKFTEPLLNECMLLLIAFKRFKLFNTSLTLNLFLTSKGLFHVAELIGCDVEDLKLTLSTRKMKVGNDNIVQKLTQSQAIDARDALAKSIYSCLFDWLVEQINKSLAVGKRCTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKRPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSKSCFKGERDQAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCTCHLPQIFASHMLTQSEKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPETYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLDNAASQDPLSVSVSILHQFNILPEMFQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARRSLKKLQGGISTLQSFIRGQKTRKAYAALLQRHRAAIIIQKWTKAMVVRNRTGTIRDAAVVIQSVIRGWLVRRCSGDIGFSKHGDMKTTESDEILVKSSFLAELQRRVLKAEAALREKDEENDILNQRIQQYENRWSEYELKMKSMEDVWQKQMRSLQSSLSIAKKSLAIDDSDRNSDASVNNTSDERDYSWDVGSNHRRQESNGTRSTSASLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQAEASLNPDQELRRLKQMFEAWKRDYGARLRETKLIINKLGTEDSALEKMKKKWWGRRNSTRIN*