AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001178.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001178.01.T01 MTR_1g032590 87.449 486 14 2 1 439 477 962 0.0 854
MsG0180001178.01.T01 MTR_1g032630 56.122 490 150 6 1 440 486 960 1.54e-176 523
MsG0180001178.01.T01 MTR_1g032610 54.082 490 157 6 1 440 429 900 8.23e-165 491
MsG0180001178.01.T01 MTR_1g032610 54.082 490 157 6 1 440 492 963 2.52e-164 492
MsG0180001178.01.T01 MTR_1g032720 54.490 490 158 5 1 440 1098 1572 1.97e-160 494
MsG0180001178.01.T01 MTR_1g032720 72.973 111 28 1 1 111 489 597 6.14e-41 156
MsG0180001178.01.T01 MTR_1g032710 51.816 413 136 4 78 440 1 400 7.57e-144 422
MsG0180001178.01.T01 MTR_4g106660 42.394 493 231 6 1 440 498 990 1.16e-126 394
MsG0180001178.01.T01 MTR_4g106660 42.394 493 231 6 1 440 498 990 1.05e-125 394
MsG0180001178.01.T01 MTR_4g106660 52.525 99 47 0 321 419 1120 1218 3.29e-25 109
MsG0180001178.01.T01 MTR_3g107390 40.486 494 233 11 1 440 541 1027 1.09e-102 331
MsG0180001178.01.T01 MTR_1g032630 56.467 317 81 5 1 275 486 787 2.36e-102 322
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001178.01.T01 AT1G14790 55.306 490 155 5 1 440 483 958 9.12e-177 524
MsG0180001178.01.T01 AT4G11130 44.186 473 209 5 1 420 502 972 2.40e-126 393
MsG0180001178.01.T01 AT3G49500 41.176 476 220 11 1 421 537 1007 6.05e-93 305
MsG0180001178.01.T01 AT3G49500 41.176 476 220 11 1 421 537 1007 6.05e-93 305
MsG0180001178.01.T01 AT3G49500 41.176 476 220 11 1 421 537 1007 6.05e-93 305
MsG0180001178.01.T01 AT3G49500 41.176 476 220 11 1 421 537 1007 6.05e-93 305
MsG0180001178.01.T01 AT3G49500 41.176 476 220 11 1 421 537 1007 6.05e-93 305
MsG0180001178.01.T01 AT2G19910 25.084 299 170 10 147 413 571 847 4.72e-13 72.0
MsG0180001178.01.T01 AT2G19920 25.000 300 163 12 147 413 577 847 4.79e-13 72.0
MsG0180001178.01.T01 AT2G19920 25.000 300 163 12 147 413 563 833 5.58e-13 71.6
MsG0180001178.01.T01 AT2G19920 25.000 300 163 12 147 413 563 833 5.58e-13 71.6
MsG0180001178.01.T01 AT2G19920 25.000 300 163 12 147 413 564 834 5.68e-13 71.6
MsG0180001178.01.T01 AT2G19910 25.084 299 170 10 147 413 562 838 6.23e-13 71.6

Find 78 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATCATGACATGGATTAA+TGG 0.241232 1:+16873338 MsG0180001178.01.T01:CDS
TATGTCCTCTATTTCTTCTA+AGG 0.262191 1:+16872171 MsG0180001178.01.T01:CDS
TACTGTTTCTCTGATGGAAT+AGG 0.353907 1:+16871555 MsG0180001178.01.T01:CDS
GAACGATTACAGACATGTTA+AGG 0.356086 1:+16871939 MsG0180001178.01.T01:CDS
CTCAAAATCCTTACATCTCC+TGG 0.368528 1:-16872265 None:intergenic
TGGATGAAGACATGGATTCT+TGG 0.373145 1:-16872245 None:intergenic
TATCAATCAAACAGCATAAT+CGG 0.377820 1:+16873232 MsG0180001178.01.T01:CDS
AGGGAAAATATCATATGAAT+TGG 0.379623 1:+16871575 MsG0180001178.01.T01:CDS
GAAAGTTTAGTTGATGAGTT+AGG 0.381385 1:-16871696 None:intergenic
AAAAGGAAAATATATTGTTA+AGG 0.383734 1:+16872207 MsG0180001178.01.T01:CDS
ATGCTGTTTGATTGATAAGT+TGG 0.385994 1:-16873226 None:intergenic
ACACACTGTGTTTGCTGATA+AGG 0.389362 1:+16873054 MsG0180001178.01.T01:CDS
GAAACAAGGACATTAAAATA+TGG 0.393289 1:+16872109 MsG0180001178.01.T01:CDS
AAAGGAAAATATATTGTTAA+GGG 0.397381 1:+16872208 MsG0180001178.01.T01:CDS
TGATCATGATGTCACATTAC+AGG 0.397919 1:+16872790 MsG0180001178.01.T01:CDS
GCCGTTGATTTCGCAAAATC+CGG 0.398804 1:+16873133 MsG0180001178.01.T01:CDS
TCTATTTCTTCTAAGGGCAT+TGG 0.408929 1:+16872178 MsG0180001178.01.T01:CDS
GAGATATCTACTTTGTCTGT+TGG 0.411478 1:+16872699 MsG0180001178.01.T01:CDS
ACTGTTTCTCTGATGGAATA+GGG 0.419913 1:+16871556 MsG0180001178.01.T01:CDS
AAAACAATATCCAGATTTCA+TGG 0.421729 1:+16873189 MsG0180001178.01.T01:CDS
TCTGCATTTCAAATCAGATA+TGG 0.422172 1:+16871645 MsG0180001178.01.T01:CDS
GAAAGAAAAGGTTCATTTGT+CGG 0.422221 1:-16871986 None:intergenic
AAGATCAATGTTAGGATGCT+TGG 0.424863 1:+16872084 MsG0180001178.01.T01:CDS
ATCAAATACTGTTTCTCTGA+TGG 0.444190 1:+16871549 MsG0180001178.01.T01:CDS
AGATATCTACTTTGTCTGTT+GGG 0.445837 1:+16872700 MsG0180001178.01.T01:CDS
TGCTCTTATTCCTCCTCATC+GGG 0.447459 1:+16872727 MsG0180001178.01.T01:CDS
TGTACCTTCCTTACATCATA+TGG 0.448881 1:+16872297 MsG0180001178.01.T01:CDS
CGGAAAGGAAGATCAATGTT+AGG 0.451061 1:+16872076 MsG0180001178.01.T01:CDS
TTAAGGGAAATGATTATTTG+TGG 0.471129 1:+16871956 MsG0180001178.01.T01:CDS
TGCTGATAAGGAACCTGAAA+AGG 0.473428 1:+16873066 MsG0180001178.01.T01:CDS
AACGATTACAGACATGTTAA+GGG 0.477883 1:+16871940 MsG0180001178.01.T01:CDS
GCAAAATATGCAGCAAGGCT+TGG 0.480669 1:+16871438 MsG0180001178.01.T01:CDS
CTCAACATCATGGAAAGAAA+AGG 0.489664 1:-16871998 None:intergenic
CTGCTCTTATTCCTCCTCAT+CGG 0.490260 1:+16872726 MsG0180001178.01.T01:CDS
GTCTTCATCCAGGAGATGTA+AGG 0.496818 1:+16872257 MsG0180001178.01.T01:CDS
ATGTCCTCTATTTCTTCTAA+GGG 0.500650 1:+16872172 MsG0180001178.01.T01:CDS
AAGAATTGCAGCTCAAAGCT+AGG 0.502836 1:+16872044 MsG0180001178.01.T01:CDS
TTAGATGGTGAATGATCCAT+TGG 0.508279 1:-16872755 None:intergenic
AATGCCCTTAGAAGAAATAG+AGG 0.516330 1:-16872176 None:intergenic
ACAGTCCACCATATGATGTA+AGG 0.516847 1:-16872305 None:intergenic
CGATGAGGAGGAATAAGAGC+AGG 0.517920 1:-16872725 None:intergenic
TTCGCAAGCTCTATACATGA+AGG 0.527235 1:-16873097 None:intergenic
CTTGCACATGCTATTTCTCA+AGG 0.527940 1:-16871718 None:intergenic
TCTTACCTTCTCCCTTTCTG+TGG 0.533848 1:-16872336 None:intergenic
ACATATTGTTCTCAACATCA+TGG 0.538517 1:-16872008 None:intergenic
AAAATATATTGTTAAGGGGA+AGG 0.542337 1:+16872213 MsG0180001178.01.T01:CDS
TGCTGTTGCAATAACTCCTA+AGG 0.542803 1:-16873032 None:intergenic
TCAAGAGAAACAGTGAGTGT+TGG 0.545595 1:+16871477 MsG0180001178.01.T01:CDS
CCTGATATAGAATTGAAAAG+AGG 0.545856 1:+16871522 MsG0180001178.01.T01:CDS
TTTCGCAAAATCCGGCGTGC+CGG 0.546053 1:+16873141 MsG0180001178.01.T01:CDS
AAGAATCCATGTCTTCATCC+AGG 0.558868 1:+16872247 MsG0180001178.01.T01:CDS
TACATTGTCAAAGACACCTT+AGG 0.559265 1:+16873016 MsG0180001178.01.T01:CDS
GAGTCTTAAAAGGAAGCAAA+GGG 0.559514 1:+16871850 MsG0180001178.01.T01:intron
CGAGTCTTAAAAGGAAGCAA+AGG 0.561207 1:+16871849 MsG0180001178.01.T01:intron
TCCTCATCGGGAAAATCCAA+TGG 0.563415 1:+16872739 MsG0180001178.01.T01:CDS
ATCAGATATGGTGGATACAA+AGG 0.572566 1:+16871657 MsG0180001178.01.T01:CDS
ATCATGTCGAGTGCATTGAA+TGG 0.577024 1:-16871908 None:intergenic
TATCTGATTTGAAATGCAGA+TGG 0.580249 1:-16871642 None:intergenic
GCATTTCAAATCAGATATGG+TGG 0.580941 1:+16871648 MsG0180001178.01.T01:CDS
AAGGAAAATATATTGTTAAG+GGG 0.591481 1:+16872209 MsG0180001178.01.T01:CDS
TGTTAAGGGGAAGGTAGTTG+TGG 0.591754 1:+16872222 MsG0180001178.01.T01:CDS
TGGTACTTCAGCCGGCACGC+CGG 0.600336 1:-16873152 None:intergenic
TGAATGTTCAGGAAGTGACT+TGG 0.612881 1:+16872673 MsG0180001178.01.T01:intron
ACATCTCCTGGATGAAGACA+TGG 0.618058 1:-16872253 None:intergenic
TCGCAAGCTCTATACATGAA+GGG 0.624470 1:-16873096 None:intergenic
ACTTTGGCTACAGGATGTAG+AGG 0.624783 1:+16872979 MsG0180001178.01.T01:intron
TGTTCAGGAAGTGACTTGGA+TGG 0.629681 1:+16872677 MsG0180001178.01.T01:intron
TCCACCATATGATGTAAGGA+AGG 0.632969 1:-16872301 None:intergenic
CAAGTTCTATGATCATGACA+TGG 0.640551 1:+16873330 MsG0180001178.01.T01:CDS
AAGGACATTAAAATATGGAG+AGG 0.645356 1:+16872114 MsG0180001178.01.T01:CDS
ATGTGGCAAAATATGCAGCA+AGG 0.659612 1:+16871433 MsG0180001178.01.T01:CDS
ACCTTCCTTACATCATATGG+TGG 0.663906 1:+16872300 MsG0180001178.01.T01:CDS
GATGAGGAGGAATAAGAGCA+GGG 0.664145 1:-16872724 None:intergenic
GTGCAACATTCTTCACCTCG+CGG 0.681079 1:-16873264 None:intergenic
TAGGATGCTTGGATGAAACA+AGG 0.681329 1:+16872095 MsG0180001178.01.T01:CDS
GACATCATGATCAACATGCA+TGG 0.687239 1:-16872780 None:intergenic
GCACTCGACATGATGTCACA+AGG 0.688978 1:+16871917 MsG0180001178.01.T01:CDS
AATCGGAAAGCTTTACCGCG+AGG 0.742148 1:+16873249 MsG0180001178.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTATTTTTATATACAAT+AGG - Chr1:16872902-16872921 None:intergenic 10.0%
!! AAAAGGAAAATATATTGTTA+AGG + Chr1:16872207-16872226 MsG0180001178.01.T01:CDS 15.0%
!! AAAGGAAAATATATTGTTAA+GGG + Chr1:16872208-16872227 MsG0180001178.01.T01:CDS 15.0%
!! AAGGAAAATATATTGTTAAG+GGG + Chr1:16872209-16872228 MsG0180001178.01.T01:CDS 20.0%
!!! TTTTAGTGAATGATTTTTTG+AGG - Chr1:16873300-16873319 None:intergenic 20.0%
!!! TTTTGTAACAAATGATTGAA+TGG - Chr1:16872499-16872518 None:intergenic 20.0%
!!! TTTTTGAAACAAATGTTGAA+TGG - Chr1:16872391-16872410 None:intergenic 20.0%
! AAAACAATATCCAGATTTCA+TGG + Chr1:16873189-16873208 MsG0180001178.01.T01:CDS 25.0%
! AAAATATATTGTTAAGGGGA+AGG + Chr1:16872213-16872232 MsG0180001178.01.T01:CDS 25.0%
! AGGGAAAATATCATATGAAT+TGG + Chr1:16871575-16871594 MsG0180001178.01.T01:CDS 25.0%
! AGGTATGAGTAAAATAGTAT+AGG + Chr1:16872456-16872475 MsG0180001178.01.T01:intron 25.0%
! ATATCTCTTCCAAGAAAAAA+TGG + Chr1:16872148-16872167 MsG0180001178.01.T01:CDS 25.0%
! GAAACAAGGACATTAAAATA+TGG + Chr1:16872109-16872128 MsG0180001178.01.T01:CDS 25.0%
! GATTATATTCATTATGCGTA+TGG + Chr1:16872597-16872616 MsG0180001178.01.T01:intron 25.0%
! TAACAAATGATTGAATGGAT+AGG - Chr1:16872494-16872513 None:intergenic 25.0%
! TACAAAATCAACATAACTTG+AGG + Chr1:16872512-16872531 MsG0180001178.01.T01:intron 25.0%
! TATATACAATAGGCAAAACT+AGG - Chr1:16872892-16872911 None:intergenic 25.0%
! TATCAATCAAACAGCATAAT+CGG + Chr1:16873232-16873251 MsG0180001178.01.T01:CDS 25.0%
! TTAAGGGAAATGATTATTTG+TGG + Chr1:16871956-16871975 MsG0180001178.01.T01:CDS 25.0%
! TTGAATGGATAAGAAATTTG+TGG - Chr1:16872376-16872395 None:intergenic 25.0%
!! TTTTCATGAAATCAAGAATG+TGG + Chr1:16871416-16871435 MsG0180001178.01.T01:CDS 25.0%
!!! AATCTGGATATTGTTTTACA+TGG - Chr1:16873186-16873205 None:intergenic 25.0%
!!! TATCTTCTTTTTGTGTCATT+TGG - Chr1:16872834-16872853 None:intergenic 25.0%
AAAATCAACATAACTTGAGG+TGG + Chr1:16872515-16872534 MsG0180001178.01.T01:intron 30.0%
AACGATTACAGACATGTTAA+GGG + Chr1:16871940-16871959 MsG0180001178.01.T01:CDS 30.0%
AAGGACATTAAAATATGGAG+AGG + Chr1:16872114-16872133 MsG0180001178.01.T01:CDS 30.0%
ACATATTGTTCTCAACATCA+TGG - Chr1:16872011-16872030 None:intergenic 30.0%
AGATATCTACTTTGTCTGTT+GGG + Chr1:16872700-16872719 MsG0180001178.01.T01:CDS 30.0%
CAAGAAGTTGCTAAAAAATG+TGG + Chr1:16871600-16871619 MsG0180001178.01.T01:CDS 30.0%
CAATACTAGATGTATTGTCA+TGG + Chr1:16871757-16871776 MsG0180001178.01.T01:intron 30.0%
CCTGATATAGAATTGAAAAG+AGG + Chr1:16871522-16871541 MsG0180001178.01.T01:CDS 30.0%
GAAAGAAAAGGTTCATTTGT+CGG - Chr1:16871989-16872008 None:intergenic 30.0%
TCTGCATTTCAAATCAGATA+TGG + Chr1:16871645-16871664 MsG0180001178.01.T01:CDS 30.0%
! ATCAAATACTGTTTCTCTGA+TGG + Chr1:16871549-16871568 MsG0180001178.01.T01:CDS 30.0%
! ATGCTGTTTGATTGATAAGT+TGG - Chr1:16873229-16873248 None:intergenic 30.0%
! ATGTCCTCTATTTCTTCTAA+GGG + Chr1:16872172-16872191 MsG0180001178.01.T01:CDS 30.0%
! CCTCTTTTCAATTCTATATC+AGG - Chr1:16871525-16871544 None:intergenic 30.0%
! TATCTGATTTGAAATGCAGA+TGG - Chr1:16871645-16871664 None:intergenic 30.0%
! TATGTCCTCTATTTCTTCTA+AGG + Chr1:16872171-16872190 MsG0180001178.01.T01:CDS 30.0%
! TCAAAGCTAGGATTTTTGTT+CGG + Chr1:16872056-16872075 MsG0180001178.01.T01:CDS 30.0%
! TCTAAAGTGGTATATTTGCA+GGG - Chr1:16872563-16872582 None:intergenic 30.0%
! TGTTTTACATGGAGATGTTT+TGG - Chr1:16873175-16873194 None:intergenic 30.0%
!! GAAAGTTTAGTTGATGAGTT+AGG - Chr1:16871699-16871718 None:intergenic 30.0%
!! TATTGCTTTTCCATGAAATC+TGG - Chr1:16873202-16873221 None:intergenic 30.0%
!! TTCTAAAGTGGTATATTTGC+AGG - Chr1:16872564-16872583 None:intergenic 30.0%
AAGATCAATGTTAGGATGCT+TGG + Chr1:16872084-16872103 MsG0180001178.01.T01:CDS 35.0%
AATGCCCTTAGAAGAAATAG+AGG - Chr1:16872179-16872198 None:intergenic 35.0%
ACAACAGAACGATTACTTGA+CGG - Chr1:16871809-16871828 None:intergenic 35.0%
CAAGTTCTATGATCATGACA+TGG + Chr1:16873330-16873349 MsG0180001178.01.T01:CDS 35.0%
CTCAACATCATGGAAAGAAA+AGG - Chr1:16872001-16872020 None:intergenic 35.0%
GAACGATTACAGACATGTTA+AGG + Chr1:16871939-16871958 MsG0180001178.01.T01:CDS 35.0%
GAGATATCTACTTTGTCTGT+TGG + Chr1:16872699-16872718 MsG0180001178.01.T01:CDS 35.0%
GAGTCTTAAAAGGAAGCAAA+GGG + Chr1:16871850-16871869 MsG0180001178.01.T01:intron 35.0%
GCATTTCAAATCAGATATGG+TGG + Chr1:16871648-16871667 MsG0180001178.01.T01:CDS 35.0%
GCTATGACATATCACTACTT+TGG + Chr1:16872963-16872982 MsG0180001178.01.T01:intron 35.0%
GTTAAGGATCGAGTCTTAAA+AGG + Chr1:16871840-16871859 MsG0180001178.01.T01:intron 35.0%
TACATTGTCAAAGACACCTT+AGG + Chr1:16873016-16873035 MsG0180001178.01.T01:CDS 35.0%
TCACTTCCTGAACATTCATT+AGG - Chr1:16872671-16872690 None:intergenic 35.0%
TGATCATGATGTCACATTAC+AGG + Chr1:16872790-16872809 MsG0180001178.01.T01:CDS 35.0%
TGCTAAAAAATGTGGTTGCA+AGG + Chr1:16871608-16871627 MsG0180001178.01.T01:CDS 35.0%
TGTACCTTCCTTACATCATA+TGG + Chr1:16872297-16872316 MsG0180001178.01.T01:CDS 35.0%
TTAGATGGTGAATGATCCAT+TGG - Chr1:16872758-16872777 None:intergenic 35.0%
TTGCAGTTGAGAATATAGCA+AGG + Chr1:16872436-16872455 MsG0180001178.01.T01:intron 35.0%
TTTCTCGTGTCTGAATTTGT+TGG + Chr1:16872941-16872960 MsG0180001178.01.T01:intron 35.0%
! ACTGTTTCTCTGATGGAATA+GGG + Chr1:16871556-16871575 MsG0180001178.01.T01:CDS 35.0%
! TACTGTTTCTCTGATGGAAT+AGG + Chr1:16871555-16871574 MsG0180001178.01.T01:CDS 35.0%
! TCGCTATCAATCTTCTAAAG+TGG - Chr1:16872576-16872595 None:intergenic 35.0%
! TCTATTTCTTCTAAGGGCAT+TGG + Chr1:16872178-16872197 MsG0180001178.01.T01:CDS 35.0%
!! ATCAGATATGGTGGATACAA+AGG + Chr1:16871657-16871676 MsG0180001178.01.T01:CDS 35.0%
!!! GAGGACATACCATTTTTTCT+TGG - Chr1:16872160-16872179 None:intergenic 35.0%
!!! TCAACATGCATGGTTTTAGA+TGG - Chr1:16872773-16872792 None:intergenic 35.0%
!!! TGTGTTGTTTTCCACAGAAA+GGG + Chr1:16872325-16872344 MsG0180001178.01.T01:CDS 35.0%
AAGAATCCATGTCTTCATCC+AGG + Chr1:16872247-16872266 MsG0180001178.01.T01:CDS 40.0%
AAGAATTGCAGCTCAAAGCT+AGG + Chr1:16872044-16872063 MsG0180001178.01.T01:CDS 40.0%
ACAGTCCACCATATGATGTA+AGG - Chr1:16872308-16872327 None:intergenic 40.0%
ACCTTCCTTACATCATATGG+TGG + Chr1:16872300-16872319 MsG0180001178.01.T01:CDS 40.0%
ACTTGACGGTTAAGAAAGCA+CGG - Chr1:16871795-16871814 None:intergenic 40.0%
ATCATGTCGAGTGCATTGAA+TGG - Chr1:16871911-16871930 None:intergenic 40.0%
ATGTGGCAAAATATGCAGCA+AGG + Chr1:16871433-16871452 MsG0180001178.01.T01:CDS 40.0%
CATATCACTACTTTGGCTAC+AGG + Chr1:16872970-16872989 MsG0180001178.01.T01:intron 40.0%
CCACATCCTAATGAATGTTC+AGG + Chr1:16872662-16872681 MsG0180001178.01.T01:intron 40.0%
CCTGAACATTCATTAGGATG+TGG - Chr1:16872665-16872684 None:intergenic 40.0%
CGAGTCTTAAAAGGAAGCAA+AGG + Chr1:16871849-16871868 MsG0180001178.01.T01:intron 40.0%
CGGAAAGGAAGATCAATGTT+AGG + Chr1:16872076-16872095 MsG0180001178.01.T01:CDS 40.0%
CTCAAAATCCTTACATCTCC+TGG - Chr1:16872268-16872287 None:intergenic 40.0%
GACATCATGATCAACATGCA+TGG - Chr1:16872783-16872802 None:intergenic 40.0%
TAGGATGCTTGGATGAAACA+AGG + Chr1:16872095-16872114 MsG0180001178.01.T01:CDS 40.0%
TCAAGAGAAACAGTGAGTGT+TGG + Chr1:16871477-16871496 MsG0180001178.01.T01:CDS 40.0%
TCCACCATATGATGTAAGGA+AGG - Chr1:16872304-16872323 None:intergenic 40.0%
TCGCAAGCTCTATACATGAA+GGG - Chr1:16873099-16873118 None:intergenic 40.0%
TGAATGTTCAGGAAGTGACT+TGG + Chr1:16872673-16872692 MsG0180001178.01.T01:intron 40.0%
TGCTGATAAGGAACCTGAAA+AGG + Chr1:16873066-16873085 MsG0180001178.01.T01:CDS 40.0%
TGCTGTTGCAATAACTCCTA+AGG - Chr1:16873035-16873054 None:intergenic 40.0%
TGGATGAAGACATGGATTCT+TGG - Chr1:16872248-16872267 None:intergenic 40.0%
TTCGCAAGCTCTATACATGA+AGG - Chr1:16873100-16873119 None:intergenic 40.0%
! ACACACTGTGTTTGCTGATA+AGG + Chr1:16873054-16873073 MsG0180001178.01.T01:CDS 40.0%
! GCTAGGATTTTTGTTCGGAA+AGG + Chr1:16872061-16872080 MsG0180001178.01.T01:CDS 40.0%
!! AAGGGCATTGGAGCAAAAAA+AGG + Chr1:16872190-16872209 MsG0180001178.01.T01:CDS 40.0%
!! CTTGCACATGCTATTTCTCA+AGG - Chr1:16871721-16871740 None:intergenic 40.0%
!!! AGATGTTTTGGTACTTCAGC+CGG - Chr1:16873163-16873182 None:intergenic 40.0%
!!! CTGTGTTGTTTTCCACAGAA+AGG + Chr1:16872324-16872343 MsG0180001178.01.T01:CDS 40.0%
ACATCTCCTGGATGAAGACA+TGG - Chr1:16872256-16872275 None:intergenic 45.0%
ACTTTGGCTACAGGATGTAG+AGG + Chr1:16872979-16872998 MsG0180001178.01.T01:intron 45.0%
ATCGTTCTGTTGTCCACACT+CGG + Chr1:16871816-16871835 MsG0180001178.01.T01:intron 45.0%
CTGCTCTTATTCCTCCTCAT+CGG + Chr1:16872726-16872745 MsG0180001178.01.T01:CDS 45.0%
GATGAGGAGGAATAAGAGCA+GGG - Chr1:16872727-16872746 None:intergenic 45.0%
GCAAAATATGCAGCAAGGCT+TGG + Chr1:16871438-16871457 MsG0180001178.01.T01:CDS 45.0%
GTCTTCATCCAGGAGATGTA+AGG + Chr1:16872257-16872276 MsG0180001178.01.T01:CDS 45.0%
TCCTCATCGGGAAAATCCAA+TGG + Chr1:16872739-16872758 MsG0180001178.01.T01:CDS 45.0%
TCTTACCTTCTCCCTTTCTG+TGG - Chr1:16872339-16872358 None:intergenic 45.0%
TGCTCTTATTCCTCCTCATC+GGG + Chr1:16872727-16872746 MsG0180001178.01.T01:CDS 45.0%
TGTTAAGGGGAAGGTAGTTG+TGG + Chr1:16872222-16872241 MsG0180001178.01.T01:CDS 45.0%
! ATTGGATTTTCCCGATGAGG+AGG - Chr1:16872740-16872759 None:intergenic 45.0%
! GCCGGATTTTGCGAAATCAA+CGG - Chr1:16873137-16873156 None:intergenic 45.0%
! GTTTTCCACAGAAAGGGAGA+AGG + Chr1:16872331-16872350 MsG0180001178.01.T01:CDS 45.0%
! TCCATTGGATTTTCCCGATG+AGG - Chr1:16872743-16872762 None:intergenic 45.0%
! TGTTCAGGAAGTGACTTGGA+TGG + Chr1:16872677-16872696 MsG0180001178.01.T01:intron 45.0%
!! GCCGTTGATTTCGCAAAATC+CGG + Chr1:16873133-16873152 MsG0180001178.01.T01:CDS 45.0%
AATCGGAAAGCTTTACCGCG+AGG + Chr1:16873249-16873268 MsG0180001178.01.T01:CDS 50.0%
CGATGAGGAGGAATAAGAGC+AGG - Chr1:16872728-16872747 None:intergenic 50.0%
GCACTCGACATGATGTCACA+AGG + Chr1:16871917-16871936 MsG0180001178.01.T01:CDS 50.0%
GTGCAACATTCTTCACCTCG+CGG - Chr1:16873267-16873286 None:intergenic 50.0%
TCGATCCTTAACACCGAGTG+TGG - Chr1:16871832-16871851 None:intergenic 50.0%
! GAAGGGCTCATTGCCTTTTC+AGG - Chr1:16873082-16873101 None:intergenic 50.0%
!! GTTGTCCACACTCGGTGTTA+AGG + Chr1:16871824-16871843 MsG0180001178.01.T01:intron 50.0%
TTTCGCAAAATCCGGCGTGC+CGG + Chr1:16873141-16873160 MsG0180001178.01.T01:CDS 55.0%
TGGTACTTCAGCCGGCACGC+CGG - Chr1:16873155-16873174 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 16871408 16873357 16871408 ID=MsG0180001178.01;Name=MsG0180001178.01
Chr1 mRNA 16871408 16873357 16871408 ID=MsG0180001178.01.T01;Parent=MsG0180001178.01;Name=MsG0180001178.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|4|0|440
Chr1 exon 16871408 16871745 16871408 ID=MsG0180001178.01.T01:exon:31537;Parent=MsG0180001178.01.T01
Chr1 exon 16871862 16872352 16871862 ID=MsG0180001178.01.T01:exon:31538;Parent=MsG0180001178.01.T01
Chr1 exon 16872684 16872811 16872684 ID=MsG0180001178.01.T01:exon:31539;Parent=MsG0180001178.01.T01
Chr1 exon 16872992 16873357 16872992 ID=MsG0180001178.01.T01:exon:31540;Parent=MsG0180001178.01.T01
Chr1 CDS 16871408 16871745 16871408 ID=MsG0180001178.01.T01:cds;Parent=MsG0180001178.01.T01
Chr1 CDS 16871862 16872352 16871862 ID=MsG0180001178.01.T01:cds;Parent=MsG0180001178.01.T01
Chr1 CDS 16872684 16872811 16872684 ID=MsG0180001178.01.T01:cds;Parent=MsG0180001178.01.T01
Chr1 CDS 16872992 16873357 16872992 ID=MsG0180001178.01.T01:cds;Parent=MsG0180001178.01.T01
Gene Sequence

>MsG0180001178.01.T01

ATGGGAGATTTTCATGAAATCAAGAATGTGGCAAAATATGCAGCAAGGCTTGGTCAATCATTCAGCTCTTCAAGAGAAACAGTGAGTGTTGGAAGACACGAAATCGAAATTATTCCTGATATAGAATTGAAAAGAGGCGAAATCAAATACTGTTTCTCTGATGGAATAGGGAAAATATCATATGAATTGGCTCAAGAAGTTGCTAAAAAATGTGGTTGCAAGGATCATATAATTCCATCTGCATTTCAAATCAGATATGGTGGATACAAAGGTGTTGTTGCTGTTGATCCTAACTCATCAACTAAACTTTCCTTGAGAAATAGCATGTGCAAGTTTAAGAAGCAAAGGGAGATTGTTAATAAGCTCAAAATGATATCAAGAAAACCATTCAATGCACTCGACATGATGTCACAAGGAACGATTACAGACATGTTAAGGGAAATGATTATTTGTGGCTTCAATCCGACAAATGAACCTTTTCTTTCCATGATGTTGAGAACAATATGTGCAACAAAGTTACAAGAATTGCAGCTCAAAGCTAGGATTTTTGTTCGGAAAGGAAGATCAATGTTAGGATGCTTGGATGAAACAAGGACATTAAAATATGGAGAGGTATTTGTGCAGATATCTCTTCCAAGAAAAAATGGTATGTCCTCTATTTCTTCTAAGGGCATTGGAGCAAAAAAAGGAAAATATATTGTTAAGGGGAAGGTAGTTGTGGCCAAGAATCCATGTCTTCATCCAGGAGATGTAAGGATTTTGAGAGCGATCGATGTACCTTCCTTACATCATATGGTGGACTGTGTTGTTTTCCACAGAAAGGGAGAAGGAAGTGACTTGGATGGAGATATCTACTTTGTCTGTTGGGACCCTGCTCTTATTCCTCCTCATCGGGAAAATCCAATGGATCATTCACCATCTAAAACCATGCATGTTGATCATGATGTCACATTACAGGATGTAGAGGAGCATTTCACTCACTACATTGTCAAAGACACCTTAGGAGTTATTGCAACAGCACACACTGTGTTTGCTGATAAGGAACCTGAAAAGGCAATGAGCCCTTCATGTATAGAGCTTGCGAAACTACACTCGATCGCCGTTGATTTCGCAAAATCCGGCGTGCCGGCTGAAGTACCAAAACATCTCCATGTAAAACAATATCCAGATTTCATGGAAAAGCAATACAAACCAACTTATCAATCAAACAGCATAATCGGAAAGCTTTACCGCGAGGTGAAGAATGTTGCACAACAAAAAAGCCTCAAAAAATCATTCACTAAAAAAGCTGCAAACAAGTTCTATGATCATGACATGGATTAA

Protein sequence

>MsG0180001178.01.T01

MGDFHEIKNVAKYAARLGQSFSSSRETVSVGRHEIEIIPDIELKRGEIKYCFSDGIGKISYELAQEVAKKCGCKDHIIPSAFQIRYGGYKGVVAVDPNSSTKLSLRNSMCKFKKQREIVNKLKMISRKPFNALDMMSQGTITDMLREMIICGFNPTNEPFLSMMLRTICATKLQELQLKARIFVRKGRSMLGCLDETRTLKYGEVFVQISLPRKNGMSSISSKGIGAKKGKYIVKGKVVVAKNPCLHPGDVRILRAIDVPSLHHMVDCVVFHRKGEGSDLDGDIYFVCWDPALIPPHRENPMDHSPSKTMHVDHDVTLQDVEEHFTHYIVKDTLGVIATAHTVFADKEPEKAMSPSCIELAKLHSIAVDFAKSGVPAEVPKHLHVKQYPDFMEKQYKPTYQSNSIIGKLYREVKNVAQQKSLKKSFTKKAANKFYDHDMD*