Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043065.01.T01 | KEH18718.1 | 90.559 | 519 | 31 | 1 | 7 | 525 | 2 | 502 | 0 | 964 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043065.01.T01 | O82415 | 66.214 | 515 | 161 | 3 | 11 | 521 | 6 | 511 | 0 | 708 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043065.01.T01 | A0A072TPD4 | 90.559 | 519 | 31 | 1 | 7 | 525 | 2 | 502 | 0.0 | 964 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0780041004.01 | MsG0880043065.01 | 0.808448 | 3.081465e-50 | 1.762468e-47 |
| MsG0880043065.01 | MsG0880044884.01 | 0.813374 | 2.643289e-51 | 1.723268e-48 |
| MsG0880043065.01 | MsG0880046764.01 | 0.803343 | 3.648211e-49 | 1.828765e-46 |
| MsG0480022537.01 | MsG0880043065.01 | 0.811569 | 6.557435e-51 | 4.073109e-48 |
| MsG0580028024.01 | MsG0880043065.01 | 0.803535 | 3.328801e-49 | 1.677036e-46 |
| MsG0580028925.01 | MsG0880043065.01 | 0.801178 | 1.017650e-48 | 4.828237e-46 |
| MsG0280009635.01 | MsG0880043065.01 | 0.803215 | 3.877873e-49 | 1.937546e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043065.01.T01 | MTR_8g028060 | 90.559 | 519 | 31 | 1 | 7 | 525 | 2 | 502 | 0.0 | 964 |
| MsG0880043065.01.T01 | MTR_7g058700 | 67.465 | 501 | 158 | 3 | 22 | 520 | 1 | 498 | 0.0 | 705 |
| MsG0880043065.01.T01 | MTR_2g029430 | 65.251 | 518 | 158 | 4 | 22 | 520 | 1 | 515 | 0.0 | 695 |
| MsG0880043065.01.T01 | MTR_2g029450 | 65.251 | 518 | 158 | 4 | 22 | 520 | 1 | 515 | 0.0 | 695 |
| MsG0880043065.01.T01 | MTR_7g098730 | 56.112 | 499 | 200 | 3 | 22 | 520 | 24 | 503 | 0.0 | 601 |
| MsG0880043065.01.T01 | MTR_7g098700 | 55.912 | 499 | 201 | 2 | 22 | 520 | 50 | 529 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043065.01.T01 | AT2G20340 | 55.731 | 506 | 205 | 2 | 15 | 520 | 2 | 488 | 0.0 | 612 |
| MsG0880043065.01.T01 | AT4G28680 | 54.000 | 500 | 209 | 4 | 22 | 517 | 48 | 530 | 0.0 | 569 |
| MsG0880043065.01.T01 | AT4G28680 | 54.000 | 500 | 209 | 4 | 22 | 517 | 57 | 539 | 0.0 | 568 |
| MsG0880043065.01.T01 | AT4G28680 | 53.800 | 500 | 208 | 4 | 22 | 517 | 57 | 537 | 0.0 | 568 |
| MsG0880043065.01.T01 | AT4G28680 | 53.586 | 502 | 208 | 5 | 22 | 517 | 57 | 539 | 0.0 | 564 |
| MsG0880043065.01.T01 | AT2G20340 | 52.372 | 506 | 195 | 3 | 15 | 520 | 2 | 461 | 0.0 | 558 |
| MsG0880043065.01.T01 | AT4G28680 | 51.136 | 528 | 209 | 5 | 22 | 517 | 48 | 558 | 0.0 | 553 |
| MsG0880043065.01.T01 | AT4G28680 | 56.012 | 341 | 145 | 2 | 22 | 358 | 48 | 387 | 1.92e-139 | 409 |
| MsG0880043065.01.T01 | AT4G28680 | 56.522 | 322 | 135 | 2 | 22 | 339 | 48 | 368 | 2.00e-132 | 390 |
Find 81 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCAAAAGAATATGATATT+TGG | 0.172126 | 8:+18377024 | MsG0880043065.01.T01:CDS |
| ATTTAGCATGTTGTTGTCTT+TGG | 0.215237 | 8:+18377168 | MsG0880043065.01.T01:CDS |
| TCATTACACAACAAATTTAT+AGG | 0.221719 | 8:-18377002 | None:intergenic |
| GGGAAGTAAGCATAATAATT+TGG | 0.248044 | 8:-18376471 | None:intergenic |
| TTCTTGTTCCTCAAGAATTC+AGG | 0.263166 | 8:-18377233 | None:intergenic |
| AATTCTCTTTGGTTTGCTTT+AGG | 0.263480 | 8:+18377459 | MsG0880043065.01.T01:CDS |
| AATTCAATGCACTCAAACTA+TGG | 0.272569 | 8:+18377312 | MsG0880043065.01.T01:CDS |
| AATGATGAATGATGCATATT+TGG | 0.273967 | 8:+18377538 | MsG0880043065.01.T01:CDS |
| TTAGCTTTAATGCACATAAA+TGG | 0.274730 | 8:+18377135 | MsG0880043065.01.T01:CDS |
| ATCAATGTAATGTCTAAATT+CGG | 0.275508 | 8:-18377090 | None:intergenic |
| CTAGATTCAATTAATAGTTC+TGG | 0.298216 | 8:+18377584 | MsG0880043065.01.T01:CDS |
| GCATTGAATTTCCTACTTAG+AGG | 0.299375 | 8:-18377299 | None:intergenic |
| GGTTCTACTTTACTTAAAAC+TGG | 0.304529 | 8:-18376333 | None:intergenic |
| CCTAGTAGTGGTAGCATAGA+AGG | 0.306169 | 8:+18376492 | MsG0880043065.01.T01:CDS |
| GAATTTAGACATTACATTGA+TGG | 0.322421 | 8:+18377092 | MsG0880043065.01.T01:CDS |
| TTGAAACTATTGTTATGAAT+TGG | 0.340811 | 8:+18376592 | MsG0880043065.01.T01:CDS |
| CCTTCTATGCTACCACTACT+AGG | 0.342459 | 8:-18376492 | None:intergenic |
| TTCAAGGTCAAGAGGATTCA+TGG | 0.342749 | 8:-18376241 | None:intergenic |
| TTTGAGAAATCATGTGGAAA+TGG | 0.355629 | 8:+18377376 | MsG0880043065.01.T01:CDS |
| TTTAGCATGTTGTTGTCTTT+GGG | 0.355683 | 8:+18377169 | MsG0880043065.01.T01:CDS |
| GGTAGCATAGAAGGGTTTAT+AGG | 0.358730 | 8:+18376501 | MsG0880043065.01.T01:CDS |
| CTTGTCTTCTGAATTCTTCA+AGG | 0.364025 | 8:-18376257 | None:intergenic |
| TGTGCCAAGTAAATTCTCTT+TGG | 0.370857 | 8:+18377448 | MsG0880043065.01.T01:CDS |
| GGCAAAAGAATATGATATTT+GGG | 0.371420 | 8:+18377025 | MsG0880043065.01.T01:CDS |
| CACATGATGTTCTTCTGTTA+AGG | 0.374410 | 8:-18377672 | None:intergenic |
| TGTGACTATGACATGGAAAT+TGG | 0.375252 | 8:+18377691 | MsG0880043065.01.T01:CDS |
| GGTAGTGAAGGTTACTTTGT+TGG | 0.379028 | 8:+18377512 | MsG0880043065.01.T01:CDS |
| AGCACTGGATTCAATGTTGT+TGG | 0.388382 | 8:+18376534 | MsG0880043065.01.T01:CDS |
| TCAATTGACTCTGGTTGAAA+TGG | 0.406321 | 8:-18376390 | None:intergenic |
| TTTGTTATTAGATGTGCTAT+TGG | 0.414656 | 8:+18377644 | MsG0880043065.01.T01:CDS |
| CAAATTGGAAAGGATAATAT+AGG | 0.417774 | 8:+18376750 | MsG0880043065.01.T01:CDS |
| CAAACCAAAGAGAATTTACT+TGG | 0.423556 | 8:-18377452 | None:intergenic |
| TATAAATTTGTTGTGTAATG+AGG | 0.425790 | 8:+18377004 | MsG0880043065.01.T01:CDS |
| ACTATTGTTATGAATTGGCT+TGG | 0.446648 | 8:+18376597 | MsG0880043065.01.T01:CDS |
| TTAGCAGCACTAATTGCTAA+TGG | 0.453729 | 8:-18377488 | None:intergenic |
| TCAATGTAATGTCTAAATTC+GGG | 0.460024 | 8:-18377089 | None:intergenic |
| GGTGGTGGTGGTGTATTGTT+AGG | 0.464299 | 8:+18376669 | MsG0880043065.01.T01:CDS |
| TGAATCACTTTGAGGAGGGT+TGG | 0.466964 | 8:-18376211 | None:intergenic |
| TCAATGTTGTTGGATTCAAT+TGG | 0.469545 | 8:+18376544 | MsG0880043065.01.T01:CDS |
| TTAGCAATTAGTGCTGCTAA+TGG | 0.478057 | 8:+18377491 | MsG0880043065.01.T01:CDS |
| CTCATCCAATGTGTGATACC+AGG | 0.478574 | 8:-18376447 | None:intergenic |
| AAGTTATTGACTACAAAGAT+TGG | 0.481411 | 8:+18377270 | MsG0880043065.01.T01:CDS |
| TCATCACATATTAAGGGTGG+TGG | 0.486678 | 8:+18376654 | MsG0880043065.01.T01:CDS |
| CTGAATTCTTCAAGGTCAAG+AGG | 0.498033 | 8:-18376249 | None:intergenic |
| AGTATTGATTCAATTGACTC+TGG | 0.499975 | 8:-18376399 | None:intergenic |
| ATGAGTCATGGTGAGGTTGA+AGG | 0.500084 | 8:+18377617 | MsG0880043065.01.T01:CDS |
| CATGTCGATGCTGCTTATGC+CGG | 0.503291 | 8:+18377050 | MsG0880043065.01.T01:CDS |
| ATAGGTGAAATGTTAAGCAC+TGG | 0.507546 | 8:+18376519 | MsG0880043065.01.T01:CDS |
| TTCAATTAATAGTTCTGGCA+AGG | 0.519470 | 8:+18377589 | MsG0880043065.01.T01:CDS |
| ATTGGCAAATACCTCTAAGT+AGG | 0.523602 | 8:+18377288 | MsG0880043065.01.T01:CDS |
| TTTGTGAATCACTTTGAGGA+GGG | 0.526051 | 8:-18376215 | None:intergenic |
| CAACAAATCCTGAATTCTTG+AGG | 0.537102 | 8:+18377225 | MsG0880043065.01.T01:CDS |
| GTTTCAAGCTCAGTTGCAGC+TGG | 0.540613 | 8:-18376576 | None:intergenic |
| AATGTATAATATAGTTGAGA+GGG | 0.541659 | 8:+18377756 | MsG0880043065.01.T01:exon |
| TTGTCGAAAGTAAAGACTCA+GGG | 0.546667 | 8:-18376899 | None:intergenic |
| AAAACTTTCTCAAATTGGAA+AGG | 0.548418 | 8:+18376740 | MsG0880043065.01.T01:CDS |
| TCACATATTAAGGGTGGTGG+TGG | 0.549341 | 8:+18376657 | MsG0880043065.01.T01:CDS |
| TGGATTGTTCTTCGAAGCTA+CGG | 0.551140 | 8:+18377332 | MsG0880043065.01.T01:CDS |
| AATCTTTGATAATTATTCTG+AGG | 0.551690 | 8:-18377784 | None:intergenic |
| GACTAGTGAGGAAAGATGAG+AGG | 0.555406 | 8:+18377414 | MsG0880043065.01.T01:CDS |
| ATTGTCGAAAGTAAAGACTC+AGG | 0.561839 | 8:-18376900 | None:intergenic |
| GGTTGAAATGGAGCTGAAGA+TGG | 0.565520 | 8:-18376378 | None:intergenic |
| TATATTATACATTAGTTGAG+AGG | 0.568718 | 8:-18377746 | None:intergenic |
| TATGCTTACTTCCCTAGTAG+TGG | 0.569287 | 8:+18376480 | MsG0880043065.01.T01:CDS |
| GGGACAAATACAAGCTGGAC+CGG | 0.573423 | 8:-18377069 | None:intergenic |
| CTAGTAGTGGTAGCATAGAA+GGG | 0.574013 | 8:+18376493 | MsG0880043065.01.T01:CDS |
| GTTCAACAACATATAATCCC+TGG | 0.575014 | 8:+18376429 | MsG0880043065.01.T01:CDS |
| CTTCTATGCTACCACTACTA+GGG | 0.576475 | 8:-18376491 | None:intergenic |
| CTTGAAGAATTCAGAAGACA+AGG | 0.579582 | 8:+18376258 | MsG0880043065.01.T01:CDS |
| AATTCGGGACAAATACAAGC+TGG | 0.586374 | 8:-18377074 | None:intergenic |
| TTACATTGATGGAATTGAAG+AGG | 0.594140 | 8:+18377103 | MsG0880043065.01.T01:CDS |
| AGTGCTGCTAATGGTAGTGA+AGG | 0.601447 | 8:+18377500 | MsG0880043065.01.T01:CDS |
| GGCAAGGCGTACATGAGTCA+TGG | 0.605690 | 8:+18377605 | MsG0880043065.01.T01:CDS |
| TAATGTATAATATAGTTGAG+AGG | 0.623823 | 8:+18377755 | MsG0880043065.01.T01:exon |
| TAATCCCTGGTATCACACAT+TGG | 0.630394 | 8:+18376442 | MsG0880043065.01.T01:CDS |
| TCATCCAATGTGTGATACCA+GGG | 0.633515 | 8:-18376446 | None:intergenic |
| AACATCATGTGACTATGACA+TGG | 0.637027 | 8:+18377684 | MsG0880043065.01.T01:CDS |
| ATTGTTAGGTACAACTTGTG+AGG | 0.640843 | 8:+18376683 | MsG0880043065.01.T01:CDS |
| GGCGTACATGAGTCATGGTG+AGG | 0.665486 | 8:+18377610 | MsG0880043065.01.T01:CDS |
| AAATATTTGAAGGACTAGTG+AGG | 0.669434 | 8:+18377402 | MsG0880043065.01.T01:CDS |
| TGTCGAAAGTAAAGACTCAG+GGG | 0.731045 | 8:-18376898 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTCATCACATATTAA+GGG | + | Chr8:18376648-18376667 | MsG0880043065.01.T01:CDS | 15.0% |
| !! | AATGTATAATATAGTTGAGA+GGG | + | Chr8:18377756-18377775 | MsG0880043065.01.T01:exon | 20.0% |
| !! | ATCAATGTAATGTCTAAATT+CGG | - | Chr8:18377093-18377112 | None:intergenic | 20.0% |
| !! | GATAAAAAACTTTCTCAAAT+TGG | + | Chr8:18376735-18376754 | MsG0880043065.01.T01:CDS | 20.0% |
| !! | TAATGTATAATATAGTTGAG+AGG | + | Chr8:18377755-18377774 | MsG0880043065.01.T01:exon | 20.0% |
| !! | TATATTATACATTAGTTGAG+AGG | - | Chr8:18377749-18377768 | None:intergenic | 20.0% |
| !! | TCATTACACAACAAATTTAT+AGG | - | Chr8:18377005-18377024 | None:intergenic | 20.0% |
| !! | TTGAAACTATTGTTATGAAT+TGG | + | Chr8:18376592-18376611 | MsG0880043065.01.T01:CDS | 20.0% |
| !!! | AATCTTTGATAATTATTCTG+AGG | - | Chr8:18377787-18377806 | None:intergenic | 20.0% |
| !!! | CATTTTTTCATCACATATTA+AGG | + | Chr8:18376647-18376666 | MsG0880043065.01.T01:CDS | 20.0% |
| !!! | GATGAAAAAATGAAACTTTT+GGG | - | Chr8:18376639-18376658 | None:intergenic | 20.0% |
| !!! | TATAAATTTGTTGTGTAATG+AGG | + | Chr8:18377004-18377023 | MsG0880043065.01.T01:CDS | 20.0% |
| !!! | TGATGAAAAAATGAAACTTT+TGG | - | Chr8:18376640-18376659 | None:intergenic | 20.0% |
| !!! | TTTAGAGTCATAAAAACAAA+AGG | + | Chr8:18376855-18376874 | MsG0880043065.01.T01:CDS | 20.0% |
| ! | AAAACTTTCTCAAATTGGAA+AGG | + | Chr8:18376740-18376759 | MsG0880043065.01.T01:CDS | 25.0% |
| ! | AATGATGAATGATGCATATT+TGG | + | Chr8:18377538-18377557 | MsG0880043065.01.T01:CDS | 25.0% |
| ! | AGGCAAAAGAATATGATATT+TGG | + | Chr8:18377024-18377043 | MsG0880043065.01.T01:CDS | 25.0% |
| ! | ATAGTAGCACATAAAAAACA+AGG | - | Chr8:18376954-18376973 | None:intergenic | 25.0% |
| ! | CAAATTGGAAAGGATAATAT+AGG | + | Chr8:18376750-18376769 | MsG0880043065.01.T01:CDS | 25.0% |
| ! | CTAGATTCAATTAATAGTTC+TGG | + | Chr8:18377584-18377603 | MsG0880043065.01.T01:CDS | 25.0% |
| ! | GAAATGGCAAAAATATTTGA+AGG | + | Chr8:18377392-18377411 | MsG0880043065.01.T01:CDS | 25.0% |
| ! | GAATTTAGACATTACATTGA+TGG | + | Chr8:18377092-18377111 | MsG0880043065.01.T01:CDS | 25.0% |
| ! | GGCAAAAGAATATGATATTT+GGG | + | Chr8:18377025-18377044 | MsG0880043065.01.T01:CDS | 25.0% |
| ! | TCAATGTAATGTCTAAATTC+GGG | - | Chr8:18377092-18377111 | None:intergenic | 25.0% |
| !! | AAATTCACAATCTACGTTTT+TGG | + | Chr8:18377826-18377845 | MsG0880043065.01.T01:three_prime_UTR | 25.0% |
| !! | AAGTTATTGACTACAAAGAT+TGG | + | Chr8:18377270-18377289 | MsG0880043065.01.T01:CDS | 25.0% |
| !! | ATTCTTTTAGACGTTGAAAA+TGG | + | Chr8:18376921-18376940 | MsG0880043065.01.T01:CDS | 25.0% |
| !!! | AATATTTTTGTAAGATAGCC+AGG | - | Chr8:18376357-18376376 | None:intergenic | 25.0% |
| !!! | TGTTTTTGTAATAATCTGCA+AGG | - | Chr8:18376302-18376321 | None:intergenic | 25.0% |
| !!! | TGTTTTTTATGTGCTACTAT+TGG | + | Chr8:18376954-18376973 | MsG0880043065.01.T01:CDS | 25.0% |
| !!! | TTAGCTTTAATGCACATAAA+TGG | + | Chr8:18377135-18377154 | MsG0880043065.01.T01:CDS | 25.0% |
| !!! | TTTGTTATTAGATGTGCTAT+TGG | + | Chr8:18377644-18377663 | MsG0880043065.01.T01:CDS | 25.0% |
| AATTCAATGCACTCAAACTA+TGG | + | Chr8:18377312-18377331 | MsG0880043065.01.T01:CDS | 30.0% | |
| ACTATTGTTATGAATTGGCT+TGG | + | Chr8:18376597-18376616 | MsG0880043065.01.T01:CDS | 30.0% | |
| ATTTAGCATGTTGTTGTCTT+TGG | + | Chr8:18377168-18377187 | MsG0880043065.01.T01:CDS | 30.0% | |
| CAAAAAGCAACTCAAATTGT+TGG | + | Chr8:18376816-18376835 | MsG0880043065.01.T01:CDS | 30.0% | |
| CAAACCAAAGAGAATTTACT+TGG | - | Chr8:18377455-18377474 | None:intergenic | 30.0% | |
| CCAAAAACAAAGAATACATC+AGG | + | Chr8:18376186-18376205 | MsG0880043065.01.T01:CDS | 30.0% | |
| GGGAAGTAAGCATAATAATT+TGG | - | Chr8:18376474-18376493 | None:intergenic | 30.0% | |
| GGTTCTACTTTACTTAAAAC+TGG | - | Chr8:18376336-18376355 | None:intergenic | 30.0% | |
| TCAATGTTGTTGGATTCAAT+TGG | + | Chr8:18376544-18376563 | MsG0880043065.01.T01:CDS | 30.0% | |
| TTACATTGATGGAATTGAAG+AGG | + | Chr8:18377103-18377122 | MsG0880043065.01.T01:CDS | 30.0% | |
| TTTAGCATGTTGTTGTCTTT+GGG | + | Chr8:18377169-18377188 | MsG0880043065.01.T01:CDS | 30.0% | |
| TTTGAGAAATCATGTGGAAA+TGG | + | Chr8:18377376-18377395 | MsG0880043065.01.T01:CDS | 30.0% | |
| ! | AAATATTTGAAGGACTAGTG+AGG | + | Chr8:18377402-18377421 | MsG0880043065.01.T01:CDS | 30.0% |
| ! | CAACATGCAAGTTTTCTATT+AGG | + | Chr8:18377719-18377738 | MsG0880043065.01.T01:CDS | 30.0% |
| ! | TTTTCATCACATATTAAGGG+TGG | + | Chr8:18376651-18376670 | MsG0880043065.01.T01:CDS | 30.0% |
| !! | AATTCTCTTTGGTTTGCTTT+AGG | + | Chr8:18377459-18377478 | MsG0880043065.01.T01:CDS | 30.0% |
| !! | AGTATTGATTCAATTGACTC+TGG | - | Chr8:18376402-18376421 | None:intergenic | 30.0% |
| !! | GAACTTTTTGAGAAATCATG+TGG | + | Chr8:18377370-18377389 | MsG0880043065.01.T01:CDS | 30.0% |
| !! | GTTTTAAGTAAAGTAGAACC+TGG | + | Chr8:18376336-18376355 | MsG0880043065.01.T01:CDS | 30.0% |
| !! | TTCAATTAATAGTTCTGGCA+AGG | + | Chr8:18377589-18377608 | MsG0880043065.01.T01:CDS | 30.0% |
| !!! | CCTGATGTATTCTTTGTTTT+TGG | - | Chr8:18376189-18376208 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTGAATCACTTTG+AGG | - | Chr8:18376222-18376241 | None:intergenic | 30.0% |
| AACATCATGTGACTATGACA+TGG | + | Chr8:18377684-18377703 | MsG0880043065.01.T01:CDS | 35.0% | |
| ATAGGTGAAATGTTAAGCAC+TGG | + | Chr8:18376519-18376538 | MsG0880043065.01.T01:CDS | 35.0% | |
| ATTGGCAAATACCTCTAAGT+AGG | + | Chr8:18377288-18377307 | MsG0880043065.01.T01:CDS | 35.0% | |
| ATTGTCGAAAGTAAAGACTC+AGG | - | Chr8:18376903-18376922 | None:intergenic | 35.0% | |
| ATTGTTAGGTACAACTTGTG+AGG | + | Chr8:18376683-18376702 | MsG0880043065.01.T01:CDS | 35.0% | |
| CAACAAATCCTGAATTCTTG+AGG | + | Chr8:18377225-18377244 | MsG0880043065.01.T01:CDS | 35.0% | |
| CACATGATGTTCTTCTGTTA+AGG | - | Chr8:18377675-18377694 | None:intergenic | 35.0% | |
| CTTGAAGAATTCAGAAGACA+AGG | + | Chr8:18376258-18376277 | MsG0880043065.01.T01:CDS | 35.0% | |
| CTTGTCTTCTGAATTCTTCA+AGG | - | Chr8:18376260-18376279 | None:intergenic | 35.0% | |
| GCATTGAATTTCCTACTTAG+AGG | - | Chr8:18377302-18377321 | None:intergenic | 35.0% | |
| GTTCAACAACATATAATCCC+TGG | + | Chr8:18376429-18376448 | MsG0880043065.01.T01:CDS | 35.0% | |
| TGTGACTATGACATGGAAAT+TGG | + | Chr8:18377691-18377710 | MsG0880043065.01.T01:CDS | 35.0% | |
| TGTGCCAAGTAAATTCTCTT+TGG | + | Chr8:18377448-18377467 | MsG0880043065.01.T01:CDS | 35.0% | |
| TTAGCAGCACTAATTGCTAA+TGG | - | Chr8:18377491-18377510 | None:intergenic | 35.0% | |
| TTCTTGTTCCTCAAGAATTC+AGG | - | Chr8:18377236-18377255 | None:intergenic | 35.0% | |
| TTGTCGAAAGTAAAGACTCA+GGG | - | Chr8:18376902-18376921 | None:intergenic | 35.0% | |
| ! | TCAATTGACTCTGGTTGAAA+TGG | - | Chr8:18376393-18376412 | None:intergenic | 35.0% |
| ! | TTAGCAATTAGTGCTGCTAA+TGG | + | Chr8:18377491-18377510 | MsG0880043065.01.T01:CDS | 35.0% |
| ! | TTTGTGAATCACTTTGAGGA+GGG | - | Chr8:18376218-18376237 | None:intergenic | 35.0% |
| !! | TTTTGTGAATCACTTTGAGG+AGG | - | Chr8:18376219-18376238 | None:intergenic | 35.0% |
| AATTCGGGACAAATACAAGC+TGG | - | Chr8:18377077-18377096 | None:intergenic | 40.0% | |
| CTAGTAGTGGTAGCATAGAA+GGG | + | Chr8:18376493-18376512 | MsG0880043065.01.T01:CDS | 40.0% | |
| CTGAATTCTTCAAGGTCAAG+AGG | - | Chr8:18376252-18376271 | None:intergenic | 40.0% | |
| CTTCTATGCTACCACTACTA+GGG | - | Chr8:18376494-18376513 | None:intergenic | 40.0% | |
| GGTAGCATAGAAGGGTTTAT+AGG | + | Chr8:18376501-18376520 | MsG0880043065.01.T01:CDS | 40.0% | |
| TAATCCCTGGTATCACACAT+TGG | + | Chr8:18376442-18376461 | MsG0880043065.01.T01:CDS | 40.0% | |
| TATGCTTACTTCCCTAGTAG+TGG | + | Chr8:18376480-18376499 | MsG0880043065.01.T01:CDS | 40.0% | |
| TCATCACATATTAAGGGTGG+TGG | + | Chr8:18376654-18376673 | MsG0880043065.01.T01:CDS | 40.0% | |
| TCATCCAATGTGTGATACCA+GGG | - | Chr8:18376449-18376468 | None:intergenic | 40.0% | |
| TGGATTGTTCTTCGAAGCTA+CGG | + | Chr8:18377332-18377351 | MsG0880043065.01.T01:CDS | 40.0% | |
| TGTCGAAAGTAAAGACTCAG+GGG | - | Chr8:18376901-18376920 | None:intergenic | 40.0% | |
| TTCAAGGTCAAGAGGATTCA+TGG | - | Chr8:18376244-18376263 | None:intergenic | 40.0% | |
| ! | AGCACTGGATTCAATGTTGT+TGG | + | Chr8:18376534-18376553 | MsG0880043065.01.T01:CDS | 40.0% |
| ! | GGTAGTGAAGGTTACTTTGT+TGG | + | Chr8:18377512-18377531 | MsG0880043065.01.T01:CDS | 40.0% |
| ATGAGTCATGGTGAGGTTGA+AGG | + | Chr8:18377617-18377636 | MsG0880043065.01.T01:CDS | 45.0% | |
| CCTAGTAGTGGTAGCATAGA+AGG | + | Chr8:18376492-18376511 | MsG0880043065.01.T01:CDS | 45.0% | |
| CCTTCTATGCTACCACTACT+AGG | - | Chr8:18376495-18376514 | None:intergenic | 45.0% | |
| CTCATCCAATGTGTGATACC+AGG | - | Chr8:18376450-18376469 | None:intergenic | 45.0% | |
| GACTAGTGAGGAAAGATGAG+AGG | + | Chr8:18377414-18377433 | MsG0880043065.01.T01:CDS | 45.0% | |
| GGTTGAAATGGAGCTGAAGA+TGG | - | Chr8:18376381-18376400 | None:intergenic | 45.0% | |
| ! | AGTGCTGCTAATGGTAGTGA+AGG | + | Chr8:18377500-18377519 | MsG0880043065.01.T01:CDS | 45.0% |
| ! | TCACATATTAAGGGTGGTGG+TGG | + | Chr8:18376657-18376676 | MsG0880043065.01.T01:CDS | 45.0% |
| ! | TGAATCACTTTGAGGAGGGT+TGG | - | Chr8:18376214-18376233 | None:intergenic | 45.0% |
| GGGACAAATACAAGCTGGAC+CGG | - | Chr8:18377072-18377091 | None:intergenic | 50.0% | |
| GTTTCAAGCTCAGTTGCAGC+TGG | - | Chr8:18376579-18376598 | None:intergenic | 50.0% | |
| ! | CATGTCGATGCTGCTTATGC+CGG | + | Chr8:18377050-18377069 | MsG0880043065.01.T01:CDS | 50.0% |
| !! | GGTGGTGGTGGTGTATTGTT+AGG | + | Chr8:18376669-18376688 | MsG0880043065.01.T01:CDS | 50.0% |
| GGCAAGGCGTACATGAGTCA+TGG | + | Chr8:18377605-18377624 | MsG0880043065.01.T01:CDS | 55.0% | |
| GGCGTACATGAGTCATGGTG+AGG | + | Chr8:18377610-18377629 | MsG0880043065.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 18376180 | 18377848 | 18376180 | ID=MsG0880043065.01;Name=MsG0880043065.01 |
| Chr8 | mRNA | 18376180 | 18377848 | 18376180 | ID=MsG0880043065.01.T01;Parent=MsG0880043065.01;Name=MsG0880043065.01.T01;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|91|525 |
| Chr8 | exon | 18376180 | 18377848 | 18376180 | ID=MsG0880043065.01.T01:exon:4799;Parent=MsG0880043065.01.T01 |
| Chr8 | CDS | 18376180 | 18377757 | 18376180 | ID=MsG0880043065.01.T01:cds;Parent=MsG0880043065.01.T01 |
| Chr8 | three_prime_UTR | 18377758 | 18377848 | 18377758 | ID=MsG0880043065.01.T01:three_prime_utr;Parent=MsG0880043065.01.T01 |
| Gene Sequence |
| Protein sequence |
