AlfalfaGEDB | MsG0880046764.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046764.01

KEGG: -
GO: -
PFAM: PF11317

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046764.01.T01	XP_024636561.2	84.186	215	9	1	1	215	27	216	3.05E-116	342

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046764.01.T01	A0A396IHZ0	84.186	215	9	1	1	215	27	216	1.46e-116	342

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047884.01	MsG0880046764.01	0.803571	3.271346e-49	1.649657e-46
MsG0080047910.01	MsG0880046764.01	0.832884	7.325994e-56	8.298114e-53
MsG0080047945.01	MsG0880046764.01	0.813865	2.061332e-51	1.361817e-48
MsG0080047955.01	MsG0880046764.01	0.830883	2.285348e-55	2.439547e-52
MsG0080047956.01	MsG0880046764.01	0.815191	1.049263e-51	7.184799e-49
MsG0080047989.01	MsG0880046764.01	0.827557	1.465206e-54	1.419314e-51
MsG0080048068.01	MsG0880046764.01	0.824858	6.426655e-54	5.762172e-51
MsG0080048191.01	MsG0880046764.01	0.858257	9.324949e-63	2.365485e-59
MsG0080048198.01	MsG0880046764.01	0.861046	1.350719e-63	3.770019e-60
MsG0080048273.01	MsG0880046764.01	0.820849	5.519438e-53	4.417564e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046764.01.T01	MTR_4g114410	83.902	205	8	1	11	215	21	200	1.92e-112	322

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 57 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACGAATCTCACTCTAG+TGG	0.664568	8:+77809145	None:intergenic
AAATTGCTTACAAAGATAAT+AGG	0.239088	8:+77808361	None:intergenic
AAGAAATGAATTTGTCCTTC+AGG	0.326232	8:+77808385	None:intergenic
AATTGCTTACAAAGATAATA+GGG	0.427786	8:+77808362	None:intergenic
AATTGTCTCCCAGAGAAATT+TGG	0.250039	8:+77810067	None:intergenic
ACAACTGGAATTCTGTAGTC+TGG	0.477410	8:+77809646	None:intergenic
ACAGTTTGGAATAGGAAGGA+AGG	0.602458	8:-77809707	MsG0880046764.01.T01:intron
ACGGTGTACGGACAATAAAG+TGG	0.611190	8:+77810309	None:intergenic
AGAATTCCAGTTGTACTACT+TGG	0.490268	8:-77809637	MsG0880046764.01.T01:intron
AGACAATTAACAGGAAGCCA+TGG	0.599988	8:-77810052	MsG0880046764.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAATGAATTTGTCCTTC+AGG	+	Chr8:77810266-77810285	None:intergenic	30.0%
AATTCTTGGAGATGTAAGAA+CGG	+	Chr8:77809551-77809570	None:intergenic	30.0%
ACTGTCAACAAAGAAATTCA+CGG	+	Chr8:77808926-77808945	None:intergenic	30.0%
ATATTAGAAGGAGAAAGATG+CGG	+	Chr8:77809741-77809760	None:intergenic	30.0%
ATGCTTAAAATTGTGCTATC+AGG	-	Chr8:77809299-77809318	MsG0880046764.01.T01:CDS	30.0%
GAAAATATTGGATACTTGAG+TGG	-	Chr8:77808521-77808540	MsG0880046764.01.T01:intron	30.0%
GAATTTCTTTGTTGACAGTT+TGG	-	Chr8:77808927-77808946	MsG0880046764.01.T01:intron	30.0%
GACTAGACTTTAACAACAAT+AGG	-	Chr8:77810134-77810153	MsG0880046764.01.T01:CDS	30.0%
GATCTGTTACAATCTTATGA+AGG	-	Chr8:77809085-77809104	MsG0880046764.01.T01:intron	30.0%
GATGAAGTTGTAGATTAGAA+TGG	+	Chr8:77809915-77809934	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	77808324	77810346	77808324	ID=MsG0880046764.01;Name=MsG0880046764.01
Chr8	mRNA	77808324	77810346	77808324	ID=MsG0880046764.01.T01;Parent=MsG0880046764.01;Name=MsG0880046764.01.T01;_AED=0.42;_eAED=0.52;_QI=8\|0.71\|0.62\|1\|1\|1\|8\|0\|230
Chr8	exon	77808324	77808486	77808324	ID=MsG0880046764.01.T01:exon:33286;Parent=MsG0880046764.01.T01
Chr8	exon	77808565	77808635	77808565	ID=MsG0880046764.01.T01:exon:33285;Parent=MsG0880046764.01.T01
Chr8	exon	77809130	77809168	77809130	ID=MsG0880046764.01.T01:exon:33284;Parent=MsG0880046764.01.T01
Chr8	exon	77809267	77809349	77809267	ID=MsG0880046764.01.T01:exon:33283;Parent=MsG0880046764.01.T01
Chr8	exon	77809489	77809563	77809489	ID=MsG0880046764.01.T01:exon:33282;Parent=MsG0880046764.01.T01
Chr8	exon	77809638	77809725	77809638	ID=MsG0880046764.01.T01:exon:33281;Parent=MsG0880046764.01.T01
Chr8	exon	77810027	77810154	77810027	ID=MsG0880046764.01.T01:exon:33280;Parent=MsG0880046764.01.T01
Chr8	exon	77810293	77810346	77810293	ID=MsG0880046764.01.T01:exon:33279;Parent=MsG0880046764.01.T01
Chr8	five_prime_UTR	77810339	77810346	77810339	ID=MsG0880046764.01.T01:five_prime_utr;Parent=MsG0880046764.01.T01
Chr8	CDS	77810293	77810338	77810293	ID=MsG0880046764.01.T01:cds;Parent=MsG0880046764.01.T01
Chr8	CDS	77810027	77810154	77810027	ID=MsG0880046764.01.T01:cds;Parent=MsG0880046764.01.T01
Chr8	CDS	77809638	77809725	77809638	ID=MsG0880046764.01.T01:cds;Parent=MsG0880046764.01.T01
Chr8	CDS	77809489	77809563	77809489	ID=MsG0880046764.01.T01:cds;Parent=MsG0880046764.01.T01
Chr8	CDS	77809267	77809349	77809267	ID=MsG0880046764.01.T01:cds;Parent=MsG0880046764.01.T01
Chr8	CDS	77809130	77809168	77809130	ID=MsG0880046764.01.T01:cds;Parent=MsG0880046764.01.T01
Chr8	CDS	77808565	77808635	77808565	ID=MsG0880046764.01.T01:cds;Parent=MsG0880046764.01.T01
Chr8	CDS	77808324	77808486	77808324	ID=MsG0880046764.01.T01:cds;Parent=MsG0880046764.01.T01

Gene Sequence

>MsG0880046764.01.T01

ATGGCAACCACTTTATTGTCCGTACACCGTTTTCTTCCCTCCCAAAGGAAGGAAAATATTGGATACTTGAGTGGTTTCAAGAATTCATTGTGTGGAAGAGTTGTGTTCAATCCAAATTTCTCTGGGAGACAATTAACAGGAAGCCATGGAAACCGTTTTGTTGTTAACTCACTGTTTGGAATAGGAAGGAAGGCAAAGAAGAGTATTGTCAGAGAGACTGTGATTCCTGAACCAGACTACAGAATTCCAGTTGTACTACTTGGACTGTGTTTGAATCGTCTGAAAAACATGTTCCCTTTGTTAACTGTGTATTGCCTTAATTTTGTTGGATCCTTCGGTATAGCTGGTGGGTTGGTTTACACAGATAATCTAGTGCCTGCAGTACCTGTTGGTCTCCTTGGATTGCTTCTGTTAGTCCAGACCACTAGAGTGAGATTCGTCTTTGATGATGAGGCTTTGGAGGTAAAGATAGGCGATCAGCTCGATGAATCAGGTGAGAATGCTTTCGTCGGTGGAAAAAATCGTTGGAAGTACTCAACCTTTGTAAATTGGGAATTCTGGTGGCCAAACTTCCCTATCTTGGTTTACTTCAAGGAAACACAAACAAAGCCTGAAGGACAAATTCATTTCTTCCCTATTATCTTTGTAAGCAATTTAGAAGCAAGTAAAGTAAATATACAAAATAGGAAATAG

Protein sequence

>MsG0880046764.01.T01

MATTLLSVHRFLPSQRKENIGYLSGFKNSLCGRVVFNPNFSGRQLTGSHGNRFVVNSLFGIGRKAKKSIVRETVIPEPDYRIPVVLLGLCLNRLKNMFPLLTVYCLNFVGSFGIAGGLVYTDNLVPAVPVGLLGLLLLVQTTRVRFVFDDEALEVKIGDQLDESGENAFVGGKNRWKYSTFVNWEFWWPNFPILVYFKETQTKPEGQIHFFPIIFVSNLEASKVNIQNRK*