AlfalfaGEDB | MsG0880043165.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043165.01

KEGG: -
GO: GO:0005515 GO:0006511 GO:0043531
PFAM: PF00931 PF03931

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043165.01.T01	XP_013444833.1	87.49	1223	146	3	112	1333	1	1217	0	2131

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043165.01.T01	Q9LRR4	38.619	1028	569	18	117	1122	4	991	0	670

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043165.01.T01	A0A072TPX8	87.490	1223	146	3	112	1333	1	1217	0.0	2131

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000017.01	MsG0880043165.01	0.820299	7.382646e-53	5.818930e-50
MsG0180000489.01	MsG0880043165.01	0.803110	4.076329e-49	2.031188e-46
MsG0180000491.01	MsG0880043165.01	0.804180	2.445194e-49	1.252388e-46
MsG0180001371.01	MsG0880043165.01	0.812991	3.208463e-51	2.069999e-48
MsG0180003451.01	MsG0880043165.01	0.810519	1.106899e-50	6.686578e-48
MsG0180003748.01	MsG0880043165.01	0.808373	3.197472e-50	1.825185e-47
MsG0180004311.01	MsG0880043165.01	0.806471	8.095249e-50	4.397653e-47
MsG0180004518.01	MsG0880043165.01	0.810503	1.115726e-50	6.737138e-48
MsG0180004934.01	MsG0880043165.01	0.807404	5.139536e-50	2.860177e-47
MsG0180005803.01	MsG0880043165.01	0.820865	5.472031e-53	4.381711e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0880043165.01.T01	MTR_8g030860	87.490	1223	146	3	112	1333	1	1217	2131
MsG0880043165.01.T01	MTR_3g032200	68.252	1304	374	6	112	1410	1	1269	1736
MsG0880043165.01.T01	MTR_3g033380	69.013	1307	368	7	112	1412	1	1276	1733
MsG0880043165.01.T01	MTR_3g031940	68.018	1307	378	6	112	1412	1	1273	1722
MsG0880043165.01.T01	MTR_4g050410	67.819	1302	384	5	112	1412	1	1268	1719
MsG0880043165.01.T01	MTR_3g435740	67.485	1304	391	4	109	1412	43	1313	1700
MsG0880043165.01.T01	MTR_3g032500	68.115	1289	372	7	112	1394	1	1256	1686
MsG0880043165.01.T01	MTR_3g030980	65.913	1326	416	6	112	1412	1	1315	1680
MsG0880043165.01.T01	MTR_2g063777	66.232	1303	401	7	112	1412	1	1266	1679
MsG0880043165.01.T01	MTR_3g033110	66.641	1301	381	6	112	1412	1	1248	1665

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043165.01.T01	AT3G14470	38.619	1028	569	18	117	1122	4	991	0.0	670
MsG0880043165.01.T01	AT3G14470	38.619	1028	569	18	117	1122	4	991	0.0	670
MsG0880043165.01.T01	AT3G14460	36.522	920	542	16	117	1017	1	897	7.55e-173	555
MsG0880043165.01.T01	AT3G14460	29.032	310	190	8	1057	1339	1090	1396	6.19e-19	94.4
MsG0880043165.01.T01	AT3G14460	26.293	464	287	17	987	1410	974	1422	7.12e-17	87.4
MsG0880043165.01.T01	AT3G50950	29.838	801	457	30	152	907	31	771	5.34e-67	244
MsG0880043165.01.T01	AT3G50950	29.838	801	457	30	152	907	31	771	5.34e-67	244
MsG0880043165.01.T01	AT1G58400	26.863	953	557	37	120	1014	4	874	6.17e-64	236
MsG0880043165.01.T01	AT1G58400	26.863	953	557	37	120	1014	4	874	6.17e-64	236
MsG0880043165.01.T01	AT1G58390	28.982	904	523	37	162	1017	41	873	1.79e-63	234

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Find 285 sgRNAs with CRISPR-Local

Find 737 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACCGTCGACTTTGCAT+TGG	0.546370	8:+20027285	MsG0880043165.01.T01:CDS
AAACATAACGAAGGATATCT+TGG	0.430981	8:+20017385	MsG0880043165.01.T01:CDS
AAACCCACGGGTAAGCCCGT+GGG	0.668370	8:-20026222	None:intergenic
AAACTGCCTCCCTTCCTCAT+TGG	0.458453	8:+20028246	MsG0880043165.01.T01:CDS
AAAGTGCTTCCAATGAGGAA+GGG	0.644337	8:-20028255	None:intergenic
AAATGGAGAAGATATGTAAA+AGG	0.394125	8:+20024924	MsG0880043165.01.T01:CDS
AAATTCAAGATCTTTGAGAG+AGG	0.638551	8:-20028122	None:intergenic
AACAATCAAGCATATGATTG+AGG	0.548341	8:+20017328	MsG0880043165.01.T01:CDS
AACACATGGTGCCCATCTTT+TGG	0.262755	8:+20027262	MsG0880043165.01.T01:CDS
AACAGATTCAAGGAGAGACT+TGG	0.563600	8:-20025275	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCTTAAACTGTTGCAG+CGG	+	Chr8:20017753-20017772	MsG0880043165.01.T01:intron	30.0%
AAACATAACGAAGGATATCT+TGG	+	Chr8:20017385-20017404	MsG0880043165.01.T01:CDS	30.0%
AAACTGATGGTAGTAATTGT+TGG	+	Chr8:20019820-20019839	MsG0880043165.01.T01:intron	30.0%
AACAATCAAGCATATGATTG+AGG	+	Chr8:20017328-20017347	MsG0880043165.01.T01:CDS	30.0%
AACATGTAAAGAATGTGTGA+AGG	-	Chr8:20020252-20020271	None:intergenic	30.0%
AAGATATCCTTCGTTATGTT+TGG	-	Chr8:20017386-20017405	None:intergenic	30.0%
AAGTGATTCAATTGAGTGAT+AGG	-	Chr8:20027783-20027802	None:intergenic	30.0%
AATAACGAGTATGTTGATGT+TGG	+	Chr8:20027001-20027020	MsG0880043165.01.T01:CDS	30.0%
AATCACTTAAAGTCAAGCTT+CGG	+	Chr8:20027795-20027814	MsG0880043165.01.T01:CDS	30.0%
AATGCCCTGTATTAAAAGAA+AGG	+	Chr8:20028356-20028375	MsG0880043165.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	20017260	20028453	20017260	ID=MsG0880043165.01;Name=MsG0880043165.01
Chr8	mRNA	20017260	20028453	20017260	ID=MsG0880043165.01.T01;Parent=MsG0880043165.01;Name=MsG0880043165.01.T01;_AED=0.10;_eAED=0.10;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|1412
Chr8	exon	20017260	20017489	20017260	ID=MsG0880043165.01.T01:exon:5287;Parent=MsG0880043165.01.T01
Chr8	exon	20018900	20019000	20018900	ID=MsG0880043165.01.T01:exon:5288;Parent=MsG0880043165.01.T01
Chr8	exon	20024546	20028453	20024546	ID=MsG0880043165.01.T01:exon:5289;Parent=MsG0880043165.01.T01
Chr8	CDS	20017260	20017489	20017260	ID=MsG0880043165.01.T01:cds;Parent=MsG0880043165.01.T01
Chr8	CDS	20018900	20019000	20018900	ID=MsG0880043165.01.T01:cds;Parent=MsG0880043165.01.T01
Chr8	CDS	20024546	20028453	20024546	ID=MsG0880043165.01.T01:cds;Parent=MsG0880043165.01.T01

Gene Sequence

>MsG0880043165.01.T01

ATGAGGATCACTCTCATGTGTTTTGACAGTGAGACCTTTGAAATCGATGAGGAAGTGTTGGAATCGCAAACAATCAAGCATATGATTGAGGACAATTGTGCCGATGATTTTAGAATTCCTACTCCAAACATAACGAAGGATATCTTGGCGAAGGTTAATGAGTATTGGAAGACGGCTGTAGGAGTTGCGAGTTTGAAGAACAAAAAGCTTGTAACAAGGATGATCTTAAGGTCACTCGCGGTTGCGAGTTGCATTGCTCGCGGTTGCGAGCTCTGGGTTCTAGCTCGCAGTTGCGAGTGTTCTTGCTCGCAGATGCGAGCGATGAATGTCAATATGGCTGCAGCTTTGATTGGAGGTGCATTTCTGTCTGCTTCAGTTCAAACCCTAATGGACAAACTAACTTCAACTGAGTTTCGTGATTATATCACAAAAACCAAGTTGAATGAATCATTGATGGAAGAAATGGAAACAACACTACTTGCTCTTGAAGTAGTACTTGATGATGCAGAAGAGAAGCAGATCCTTCAACCCAAAGTCAAACAATGGCTTGATCGGTTGAAAGATGCAATCTTTGATGCTGAGGATTTGCTCAATGAAATCAGCTACAATGCCTTGCGATGCAAGGTAGAGAAGAAACAAGATGGAAACATTACAGATCAGTTTTGGAACTTGCTTTCAACTCAAAATTCAAATGGAGAGAGCAATTCTGAAATGGAGAAGATATGTAAAAGGCTGCAAACTTTTGTTCAGCAGAGTAACATCTTGGGCTTGCAAAGAGCTGTAAGAGGTAGGGTTTCTCGTAGAACACCGTCAAGTTCGGTGGTGAATGAATCTGTCATGGTGGGAAGGAATGAAGATAAAGATAGACTCCTTGATGTGTTGGTATCAGACTGTGGTACCGGCAGATATAATAATTTAGGTGTTGTTGCAATTTTGGGTATGGGAGGCGTCGGTAAAACGACCCTTGCACAACTTGTTTACAACGATGAAAAAGTTGAACAACATTTTGATCTCAAAGCATGGGTTTGTGTATCGGAGGATTTCGATGTTGTGAGGATAACCAAGTCTCTCCTTGAATCTGTTGTTAGAAACACAACATCTGTCAATTCAAATGTCTGGGAAAGCAATAATCTTGATATCCTTCAAGTTGAATTAATGAAGTATTTGAAGGATAAAAGAATTTTGTTTGTGTTGGATGACATATGGAATGACAATTATCTTGATTGGGATCAGTTAATAACTCCCTTGATTAACAGAGGAACTGTAAGCAAGGTGATCATAACAACACGCGAAGAAAAAGTTGCCAAGGTTGCATGCACATTTCGTATTCATAAATTAGAACCTCTCTCTGATGAAGATTGTTGGTCTTTACTCTCGAAGCATGCATTTGGCGGTGAAGACTTTCTTCGGGGTAAATACCCAAACCTAGAAGAGATTGGCAGGAAGATTGCTAGAAAGTGTGGTGGATTGCCAGTTGCAGCAAAAGCACTTGGAGGACTAATGCATTCAAAGGTAGTTGAAAAGGAGTGGACTGCAATTCTGAATAGCGACATATGGAACTTAAAAAATGATGCAATCCTGCCCGCTTTGCATTTGAGTTATCAATATCTTCCCTCTCATTTAAAAAGATGTTTCGCCTATTGTTCAATTTTTCCAAAGGATTACCCACTTGATAGGAAGAAATTGGTTTTGTTGTGGATGGCAGAAGGCTTCCTTGATTATTATGAAGGTGAAAAAGCGGTGGAGGAATTTGGCAATGATTGTTTTGCTGAATTGTTATCTAGATCGTTAATTCAACAATCAAATGATGATGCTCATGCAGAAAAGTTTGTCATGCATGACCTTGTCAACGATCTAGCTACATCCATATCAGGAAAAAGTTGTTGCAGACTTGAATGTGGTAACATCTCTAAAAATATTCGTCATTTGTCATATAATCAAGAAGAGTATGATACTTTCATGAAGTTTAAGAATTTCTACAATTTCAAATGCTTGCGAAGCTTCTTACCCACGGGCTTACCCGTGGGTTTCTGGGGTACTGATAATTTATCCATCAAGGTGGTTGATGATTTGCTACCAACACTGAAAAGGTTGCGTATGTTATCACTATCAAGGTATAGAAACATCTTCAAGCTACCAGATTCAATTGGCAACTTGCTGCAATTGCGATATCTAGATCTCTCCTTCACTAATATCAAAAGTTTGCCTGATACAATATGCAACCTTTACAATTTGCAAACCTTGCTTTTATCCCATTGTTGGAGTCTCACTGAACTGCCAGTACATATGGGAAATTTAATCAACTTACGTCACCTTGATATAAGTTGTACAGGTACAAAGGAGTTGCCAATGGAAATTTTTGGGATAGAAAGTCTCCAAACTTTGACGGATTTTATAGTGGGGAAGCCACAGGTAGGGCCAAGTATCAAAGAACTTAGGAAATTCCCGCACCTACAAGGAAGCTTTACCGTCAAGAACCTGCATAATGTCATTGATGTCACAGAGGCAGAAGACGCCAACCTGAAAAGCAAAGAGAAAATTGAGCAATTAAATCTGGATTGGGGAAAATTAAGTGAAGACTCGCTAAAAGTGAAAGTTGTGCTTGATATGTTGCATCCACCAATAAACTTGAAGGGACTGAGCATTTACTTGTATGGTGGGACAGGTTTTCCGAATTGGTTGGGAGATTCTTCGTTTTCTAAAATGGTGTACCTTGATATCTATAATTGTGAATATTGCATGACACTTCCACCGCTAGGGCAACTACCATCTCTCAAGGACCTGAGAATAACGAGTATGTTGATGTTGGAGACAATTGGCCAAGAGTTCTATTGTGTCAAGGAAGGAAAAGCTTCTAATTCTTCCTTCCAACCATTTCCATCCCTTGAATATATAGAATTTTCCTACATGCGAAATTTGAAGGAATGGCTTCCTTTTGATGGCAATAATTTTTCTTTTCCTCGTCTTAGAACTCTGAGGTTATATGGTTGTCATGAGCTAAGGGGACATTTGCCTAGCCACCTTCCTTGCATAGAAGAAATTGATATAACACATGGTGCCCATCTTTTGGAAACACCGTCGACTTTGCATTGGTTGTCGTCAATAAAAAAAATTAATATCAATGTGCAAGCTGGAAGGACCAAACTGTCTTTACTTGGGAGTAACTCTCCGTGTATGACGCAAGATGTAGTGATTGAAAAGTGTGTTACGTTGTCATCTGTGCCAAAATTGATTCTGAGCAGCAATTTTCTTCAACACTTGGAACTCTATCACATTCCGTCTCTCAGTGCATTTCCCACAGAGGGTCTACCTACTTCATTGCAATCACTTCAAGTTGAAAATTGTGAAAATTTATCCTTCCTTCCTCCTGAAACATGGAGCAATTACAAGTCTCTTGTGATGCTTACGTTAATGAGTAGCTGTGATGCACTTACATCCTTTCCACTTGATGGTTTCCCTGTGCTCCAAAGACTAGCGCTAGTTGATTGTAGGTGTCTGGATTGCATTTTTATTTTAGAAAGTCCTTCATGTTGGTTGTCAAACCTCCGATCTCTTGAAATCAAATCCTATCACTCAATTGAATCACTTAAAGTCAAGCTTCGGATGGACATGCTCACTTCTCTTGAAGTTTTGTCTTTGGATTGTCCAGAGTTGTCATTTTGTGAAGATGTTTCTCTGCCTCCCAAATTAGAATCAATTAAGATTTTGTCGGAAAGATCAACGCCGCCTGTTACGGAATGGGGTCTCAAAGATCTGACAGCTCTTTCACGGTTGAGAATTGGAAATGGTGATGAGATACCTAACACCTTGATTAAGAAGCCATTGCTACCCATCTCCCTTCAGTCTCTGACTATCACTCGTCCCTACAAAATGAAGTCCTTTGATGGAAGTGGGCTTCGACACCTCTCCTCTCTCAAAGATCTTGAATTTTGGTATTGTGAAGACCTTGAGTCATTGCCAGCAAACTTCCTCCCGTCCTCGCTGAAATCACTTAAAATTTCTCATTGTGAAAAGCTTGAGTCATTGCCAGAAAACTGCCTCCCTTCCTCATTGGAAGCACTTTCACTTTATTATTGTGAAAAGCTTGAGTCATTACCAGAAGAAAGCCTCTCTGACTCTCTTAAGGTACTATATATTTGGGAATGCCCTGTATTAAAAGAAAGGTATAAAAAGGAGGAACATCGGTCCAAAATTTCTCACATCCCTGTCATACAAATAAATGGTAAAGTCACAATATGA

Protein sequence

>MsG0880043165.01.T01

MRITLMCFDSETFEIDEEVLESQTIKHMIEDNCADDFRIPTPNITKDILAKVNEYWKTAVGVASLKNKKLVTRMILRSLAVASCIARGCELWVLARSCECSCSQMRAMNVNMAAALIGGAFLSASVQTLMDKLTSTEFRDYITKTKLNESLMEEMETTLLALEVVLDDAEEKQILQPKVKQWLDRLKDAIFDAEDLLNEISYNALRCKVEKKQDGNITDQFWNLLSTQNSNGESNSEMEKICKRLQTFVQQSNILGLQRAVRGRVSRRTPSSSVVNESVMVGRNEDKDRLLDVLVSDCGTGRYNNLGVVAILGMGGVGKTTLAQLVYNDEKVEQHFDLKAWVCVSEDFDVVRITKSLLESVVRNTTSVNSNVWESNNLDILQVELMKYLKDKRILFVLDDIWNDNYLDWDQLITPLINRGTVSKVIITTREEKVAKVACTFRIHKLEPLSDEDCWSLLSKHAFGGEDFLRGKYPNLEEIGRKIARKCGGLPVAAKALGGLMHSKVVEKEWTAILNSDIWNLKNDAILPALHLSYQYLPSHLKRCFAYCSIFPKDYPLDRKKLVLLWMAEGFLDYYEGEKAVEEFGNDCFAELLSRSLIQQSNDDAHAEKFVMHDLVNDLATSISGKSCCRLECGNISKNIRHLSYNQEEYDTFMKFKNFYNFKCLRSFLPTGLPVGFWGTDNLSIKVVDDLLPTLKRLRMLSLSRYRNIFKLPDSIGNLLQLRYLDLSFTNIKSLPDTICNLYNLQTLLLSHCWSLTELPVHMGNLINLRHLDISCTGTKELPMEIFGIESLQTLTDFIVGKPQVGPSIKELRKFPHLQGSFTVKNLHNVIDVTEAEDANLKSKEKIEQLNLDWGKLSEDSLKVKVVLDMLHPPINLKGLSIYLYGGTGFPNWLGDSSFSKMVYLDIYNCEYCMTLPPLGQLPSLKDLRITSMLMLETIGQEFYCVKEGKASNSSFQPFPSLEYIEFSYMRNLKEWLPFDGNNFSFPRLRTLRLYGCHELRGHLPSHLPCIEEIDITHGAHLLETPSTLHWLSSIKKININVQAGRTKLSLLGSNSPCMTQDVVIEKCVTLSSVPKLILSSNFLQHLELYHIPSLSAFPTEGLPTSLQSLQVENCENLSFLPPETWSNYKSLVMLTLMSSCDALTSFPLDGFPVLQRLALVDCRCLDCIFILESPSCWLSNLRSLEIKSYHSIESLKVKLRMDMLTSLEVLSLDCPELSFCEDVSLPPKLESIKILSERSTPPVTEWGLKDLTALSRLRIGNGDEIPNTLIKKPLLPISLQSLTITRPYKMKSFDGSGLRHLSSLKDLEFWYCEDLESLPANFLPSSLKSLKISHCEKLESLPENCLPSSLEALSLYYCEKLESLPEESLSDSLKVLYIWECPVLKERYKKEEHRSKISHIPVIQINGKVTI*