AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043251.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043251.01.T01 MTR_8g032010 96.309 298 11 0 1 298 1 298 0.0 595
MsG0880043251.01.T01 MTR_8g031990 85.906 298 42 0 1 298 1 298 0.0 538
MsG0880043251.01.T01 MTR_8g032020 83.221 298 49 1 2 298 3 300 0.0 511
MsG0880043251.01.T01 MTR_8g032000 81.879 298 54 0 1 298 1 298 0.0 511
MsG0880043251.01.T01 MTR_8g031980 71.141 298 86 0 1 298 1 298 5.00e-157 440
MsG0880043251.01.T01 MTR_8g031960 71.972 289 81 0 7 295 8 296 6.60e-153 430
MsG0880043251.01.T01 MTR_8g031940 67.559 299 96 1 1 298 1 299 2.20e-146 413
MsG0880043251.01.T01 MTR_7g076660 58.054 298 113 3 1 298 1 286 2.43e-126 362
MsG0880043251.01.T01 MTR_7g076655 57.718 298 114 3 1 298 1 286 1.84e-125 360
MsG0880043251.01.T01 MTR_7g076660 58.020 293 111 3 6 298 7 287 7.17e-124 355
MsG0880043251.01.T01 MTR_8g031900 55.705 298 127 2 1 298 1 293 2.36e-120 347
MsG0880043251.01.T01 MTR_8g031910 56.522 299 117 3 1 298 1 287 1.07e-118 342
MsG0880043251.01.T01 MTR_8g031630 58.333 300 120 4 1 298 1 297 2.00e-118 342
MsG0880043251.01.T01 MTR_8g031600 58.333 300 121 2 1 298 1 298 4.04e-118 342
MsG0880043251.01.T01 MTR_8g031610 58.219 292 118 3 8 298 6 294 6.25e-116 336
MsG0880043251.01.T01 MTR_7g076665 57.143 301 120 5 1 298 1 295 1.23e-115 335
MsG0880043251.01.T01 MTR_8g031650 58.419 291 116 4 10 298 104 391 1.51e-112 331
MsG0880043251.01.T01 MTR_8g031650 61.165 103 38 2 169 269 1 103 1.12e-37 137
MsG0880043251.01.T01 MTR_7g076660 56.777 273 106 3 26 298 2 262 4.25e-112 325
MsG0880043251.01.T01 MTR_8g031650 58.419 291 116 4 10 298 270 557 1.25e-110 331
MsG0880043251.01.T01 MTR_8g031650 59.041 271 107 3 1 269 1 269 1.07e-104 316
MsG0880043251.01.T01 MTR_5g062280 52.349 298 139 2 1 298 1 295 2.82e-106 311
MsG0880043251.01.T01 MTR_8g032030 82.184 174 30 1 1 173 1 174 2.99e-97 286
MsG0880043251.01.T01 MTR_8g031850 46.644 298 116 3 1 298 1 255 3.61e-90 269
MsG0880043251.01.T01 MTR_3g079320 47.315 298 151 3 6 298 10 306 8.31e-90 270
MsG0880043251.01.T01 MTR_7g106800 47.440 293 94 3 7 294 9 246 4.21e-82 249
MsG0880043251.01.T01 MTR_5g083430 56.140 171 75 0 128 298 14 184 3.42e-70 215
MsG0880043251.01.T01 MTR_3g098470 42.088 297 135 6 5 290 33 303 5.43e-70 219
MsG0880043251.01.T01 MTR_1g031180 38.384 297 146 5 5 290 38 308 3.85e-59 192
MsG0880043251.01.T01 MTR_8g096060 36.700 297 148 6 5 290 35 302 1.93e-55 182
MsG0880043251.01.T01 MTR_4g087460 35.974 303 153 8 5 291 20 297 2.42e-52 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043251.01.T01 AT3G61220 58.472 301 117 5 1 298 1 296 4.98e-124 356
MsG0880043251.01.T01 AT3G61220 58.983 295 113 5 7 298 14 303 2.63e-122 352
MsG0880043251.01.T01 AT3G61220 58.983 295 113 5 7 298 38 327 9.87e-122 352
MsG0880043251.01.T01 AT1G01800 56.463 294 123 4 7 298 5 295 5.30e-118 341
MsG0880043251.01.T01 AT2G24190 55.814 301 125 5 1 298 1 296 9.38e-117 338
MsG0880043251.01.T01 AT2G24190 56.271 295 121 5 7 298 12 301 2.15e-115 335
MsG0880043251.01.T01 AT1G01800 54.067 209 93 2 90 298 55 260 1.17e-79 242
MsG0880043251.01.T01 AT5G51030 37.500 296 148 6 6 290 37 306 2.67e-61 197
MsG0880043251.01.T01 AT3G59710 35.517 290 157 6 6 291 18 281 1.85e-52 174
MsG0880043251.01.T01 AT3G59710 35.862 290 156 7 6 291 28 291 3.04e-52 173
MsG0880043251.01.T01 AT5G61830 38.112 286 142 4 6 280 36 297 4.37e-52 173
MsG0880043251.01.T01 AT5G61830 38.112 286 142 4 6 280 36 297 4.37e-52 173
MsG0880043251.01.T01 AT3G59710 35.862 290 156 7 6 291 47 310 5.09e-52 173

Find 60 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTAAAGAAACTGTTTA+AGG 0.116165 8:+21283623 None:intergenic
ATTTGGCAAACTTGATATTC+TGG 0.218733 8:-21285627 MsG0880043251.01.T01:intron
GGAACCTTCTTCAAAATCTT+TGG 0.239520 8:+21284062 None:intergenic
TGCATTCAAATAAATTACTA+TGG 0.252132 8:-21284540 MsG0880043251.01.T01:CDS
CATCTATTCTCTCTTCTGTT+AGG 0.258784 8:+21284103 None:intergenic
AAAAGGATGGCCAAGATATT+TGG 0.282941 8:-21284031 MsG0880043251.01.T01:CDS
GAAAAGAGGTCTTCATGATT+TGG 0.316163 8:-21285753 MsG0880043251.01.T01:CDS
CTCAGGTATGCAGTGGTGAC+TGG 0.352288 8:-21285857 MsG0880043251.01.T01:intron
GGAAGCAGTGCTAACTTAAC+AGG 0.370117 8:+21283850 None:intergenic
ATTAGTTTGTATCGAATGAA+TGG 0.371859 8:-21284155 MsG0880043251.01.T01:intron
GTTAACAATGCTGGGATTAA+CGG 0.398592 8:-21285013 MsG0880043251.01.T01:CDS
ACCAGTATTAGCAGTGATAT+CGG 0.407089 8:+21283903 None:intergenic
ACTGGATCGAACAAAGGAAT+TGG 0.415304 8:-21285839 MsG0880043251.01.T01:CDS
GTCAAGTACTCATTACGAAC+GGG 0.428471 8:-21284961 MsG0880043251.01.T01:CDS
CTTCCTAATGGTAGTCCATC+TGG 0.430212 8:-21283832 MsG0880043251.01.T01:CDS
AAGTTAGCACTGCTTCCTAA+TGG 0.431073 8:-21283844 MsG0880043251.01.T01:CDS
GAATTGGATTTGAGATAGTA+AGG 0.438309 8:-21285823 MsG0880043251.01.T01:CDS
ACACAATTGATGCAGAAGTT+AGG 0.439194 8:+21283946 None:intergenic
ACCGATATCACTGCTAATAC+TGG 0.440027 8:-21283904 MsG0880043251.01.T01:CDS
CATCTGGCGTTTACTATATC+CGG 0.447301 8:-21283816 MsG0880043251.01.T01:CDS
GTATAGGCAGCCAAATATCT+TGG 0.452873 8:+21284021 None:intergenic
AGAAGCTTTAGCAACAGTAT+AGG 0.466477 8:+21284005 None:intergenic
GTCAATGTATCATCAGGATT+GGG 0.471976 8:-21284456 MsG0880043251.01.T01:CDS
AGTCAATGTATCATCAGGAT+TGG 0.473356 8:-21284457 MsG0880043251.01.T01:CDS
TGCATCAATTGTGTTTGCCC+TGG 0.476427 8:-21283937 MsG0880043251.01.T01:CDS
ACGCCAGATGGACTACCATT+AGG 0.483185 8:+21283829 None:intergenic
GAAGGTTCCTTAGAAAGAAA+AGG 0.484128 8:-21284048 MsG0880043251.01.T01:CDS
AGAGTAGTCAATGTATCATC+AGG 0.484821 8:-21284462 MsG0880043251.01.T01:CDS
GTAAGGCAATTAGCTTCAGC+TGG 0.490726 8:-21285806 MsG0880043251.01.T01:CDS
TCCATATAAAATCATCAAAA+CGG 0.490861 8:+21283781 None:intergenic
GCATTCAAATAAATTACTAT+GGG 0.492881 8:-21284539 MsG0880043251.01.T01:CDS
TTAGTTTGTATCGAATGAAT+GGG 0.494173 8:-21284154 MsG0880043251.01.T01:intron
ATTGTGTAGGTTAACAATGC+TGG 0.496371 8:-21285022 MsG0880043251.01.T01:intron
GATGATACATTGACTACTCT+TGG 0.507830 8:+21284465 None:intergenic
ATCAGGATTGGGCAAGATAG+AGG 0.513958 8:-21284445 MsG0880043251.01.T01:intron
ATAACTGAAGGAGGGGAAGA+AGG 0.515357 8:+21284496 None:intergenic
TTGGAGACACTCAAAGCCTC+TGG 0.517200 8:-21285734 MsG0880043251.01.T01:CDS
CGGATATAGTAAACGCCAGA+TGG 0.522787 8:+21283817 None:intergenic
ATTGCTTAAACATTATCGTA+AGG 0.528749 8:+21283742 None:intergenic
GTATCGAATGAATGGGCTAA+AGG 0.528870 8:-21284147 MsG0880043251.01.T01:CDS
TTGTGTAGGTTAACAATGCT+GGG 0.550993 8:-21285021 MsG0880043251.01.T01:intron
AAAACGGATAGACTTCATTC+CGG 0.560354 8:+21283797 None:intergenic
ATGAGCAGCACCTTCTTCTA+CGG 0.562549 8:+21283873 None:intergenic
ACAGCAAGAGATGAGAAAAG+AGG 0.563297 8:-21285767 MsG0880043251.01.T01:CDS
AGATGGGAGAACATAGAGAA+AGG 0.570581 8:-21286586 MsG0880043251.01.T01:intron
CCTCTTTCTCAGGTATGCAG+TGG 0.572591 8:-21285864 MsG0880043251.01.T01:intron
GGTCTCTTCACCGTAGAAGA+AGG 0.573243 8:-21283883 MsG0880043251.01.T01:CDS
GAATCAGATAACTGAAGGAG+GGG 0.588357 8:+21284489 None:intergenic
TTGGTGAATCAGATAACTGA+AGG 0.592333 8:+21284484 None:intergenic
AGTCAAGTACTCATTACGAA+CGG 0.617703 8:-21284962 MsG0880043251.01.T01:CDS
TGAATCAGATAACTGAAGGA+GGG 0.621361 8:+21284488 None:intergenic
GTGAATCAGATAACTGAAGG+AGG 0.634353 8:+21284487 None:intergenic
AATCTGATGAGGAATTGAGA+AGG 0.642308 8:-21284596 MsG0880043251.01.T01:CDS
GTTCCTTAGAAAGAAAAGGA+TGG 0.646946 8:-21284044 MsG0880043251.01.T01:CDS
CTTGCAGGCACAATCTGATG+AGG 0.653126 8:-21284607 MsG0880043251.01.T01:intron
GTGGTGACTGGATCGAACAA+AGG 0.656701 8:-21285845 MsG0880043251.01.T01:CDS
CATTCAAATAAATTACTATG+GGG 0.662211 8:-21284538 MsG0880043251.01.T01:CDS
AGCTTCAGCTGGAATCAAAG+TGG 0.664366 8:-21285795 MsG0880043251.01.T01:CDS
AACAAAATCAGAAAGACCAG+AGG 0.674583 8:+21285718 None:intergenic
TCAAGTACTCATTACGAACG+GGG 0.752274 8:-21284960 MsG0880043251.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAATCTTATTAATAA+TGG + Chr8:21284133-21284152 None:intergenic 10.0%
!! TAACAACTAATTATTAATAT+TGG + Chr8:21284168-21284187 None:intergenic 10.0%
!! AAACATACTTAATTATATCT+TGG + Chr8:21284686-21284705 None:intergenic 15.0%
!!! TATATAGTTTGAAACTAAAT+TGG + Chr8:21283884-21283903 None:intergenic 15.0%
!!! TTTAAAACAATCAAACTTAA+GGG + Chr8:21284661-21284680 None:intergenic 15.0%
!!! TTTTAAAACAATCAAACTTA+AGG + Chr8:21284662-21284681 None:intergenic 15.0%
!! AATAACATGAACAAAATTGA+TGG + Chr8:21283938-21283957 None:intergenic 20.0%
!! AGATTGAGTAAAAAACATAA+CGG + Chr8:21285991-21286010 None:intergenic 20.0%
!! CATTCAAATAAATTACTATG+GGG - Chr8:21285676-21285695 MsG0880043251.01.T01:CDS 20.0%
!! CTAGTAAAATGATCTTTAAT+GGG + Chr8:21285465-21285484 None:intergenic 20.0%
!! GCATTCAAATAAATTACTAT+GGG - Chr8:21285675-21285694 MsG0880043251.01.T01:CDS 20.0%
!! TAATGGGAAATATTGATATT+TGG + Chr8:21285449-21285468 None:intergenic 20.0%
!! TCCATATAAAATCATCAAAA+CGG + Chr8:21286436-21286455 None:intergenic 20.0%
!! TCTAGTAAAATGATCTTTAA+TGG + Chr8:21285466-21285485 None:intergenic 20.0%
!! TGCATTCAAATAAATTACTA+TGG - Chr8:21285674-21285693 MsG0880043251.01.T01:CDS 20.0%
!! TTCAAACATATGTATATTCA+TGG - Chr8:21284067-21284086 MsG0880043251.01.T01:CDS 20.0%
!!! AAATCATTACTCATTTTTCA+AGG - Chr8:21285852-21285871 MsG0880043251.01.T01:CDS 20.0%
!!! AACAGATTTTCATATACTTT+AGG - Chr8:21283978-21283997 MsG0880043251.01.T01:CDS 20.0%
!!! AACATCAATGTTGTTATTTT+CGG + Chr8:21285582-21285601 None:intergenic 20.0%
!!! ATAATGCAAATTTAGTTCAA+AGG + Chr8:21286014-21286033 None:intergenic 20.0%
!!! ATGAAGATTTTTATTGATTC+TGG - Chr8:21285495-21285514 MsG0880043251.01.T01:intron 20.0%
!!! ATTCCTTTAATGTATGTTTT+AGG + Chr8:21284732-21284751 None:intergenic 20.0%
!!! GATTTTATCAAATCTCAATT+TGG - Chr8:21284570-21284589 MsG0880043251.01.T01:CDS 20.0%
! ACATTAAAGGAATGCATATT+TGG - Chr8:21284739-21284758 MsG0880043251.01.T01:intron 25.0%
! ACTCCTAAAACATACATTAA+AGG - Chr8:21284726-21284745 MsG0880043251.01.T01:intron 25.0%
! ACTTTAGTAGAGTAAATTGA+TGG + Chr8:21283849-21283868 None:intergenic 25.0%
! ATCAACTTTGAGTAATAACA+AGG + Chr8:21283731-21283750 None:intergenic 25.0%
! ATTGCTTAAACATTATCGTA+AGG + Chr8:21286475-21286494 None:intergenic 25.0%
! CATATCTTTGTCTAGTATTA+TGG - Chr8:21285519-21285538 MsG0880043251.01.T01:intron 25.0%
! TATACCATAGACTAAATTGA+TGG - Chr8:21284021-21284040 MsG0880043251.01.T01:CDS 25.0%
! TCAAGAAATGTATGAAATTG+AGG + Chr8:21285373-21285392 None:intergenic 25.0%
! TCTTATTAATAATGGTCCTT+TGG + Chr8:21284125-21284144 None:intergenic 25.0%
!!! ATTAGTTTGTATCGAATGAA+TGG - Chr8:21286059-21286078 MsG0880043251.01.T01:intron 25.0%
!!! CAAATTGACTACTTTTTATC+TGG + Chr8:21284875-21284894 None:intergenic 25.0%
!!! TCCGTTTTGATGATTTTATA+TGG - Chr8:21286432-21286451 MsG0880043251.01.T01:intron 25.0%
!!! TTAGTTTGTATCGAATGAAT+GGG - Chr8:21286060-21286079 MsG0880043251.01.T01:intron 25.0%
!!! TTTACCAAAGATTTTGAAGA+AGG - Chr8:21286148-21286167 MsG0880043251.01.T01:intron 25.0%
ACTAGATTCATAACATGTGT+TGG + Chr8:21285290-21285309 None:intergenic 30.0%
ATTTGGCAAACTTGATATTC+TGG - Chr8:21284587-21284606 MsG0880043251.01.T01:CDS 30.0%
CATTCAAAGAAAATTCCACA+AGG + Chr8:21285133-21285152 None:intergenic 30.0%
GAAACCATCAATTTAGTCTA+TGG + Chr8:21284028-21284047 None:intergenic 30.0%
TCAATCAGTTATAATCCTTG+TGG - Chr8:21285115-21285134 MsG0880043251.01.T01:intron 30.0%
TCACAAAACAAAGAGAAACT+AGG + Chr8:21285024-21285043 None:intergenic 30.0%
! GAATTGGATTTGAGATAGTA+AGG - Chr8:21284391-21284410 MsG0880043251.01.T01:intron 30.0%
! TATGTATATTCATGGTGTTG+AGG - Chr8:21284075-21284094 MsG0880043251.01.T01:CDS 30.0%
! TGATTTGTGTTGTTCATTGT+TGG - Chr8:21283800-21283819 MsG0880043251.01.T01:CDS 30.0%
! TGTTGGATTGACATATTTTC+TGG - Chr8:21283817-21283836 MsG0880043251.01.T01:CDS 30.0%
! TGTTTTTCATCAACTAGATG+TGG - Chr8:21284518-21284537 MsG0880043251.01.T01:CDS 30.0%
!! ATACTTTAGGATTGAGTTGA+TGG - Chr8:21283991-21284010 MsG0880043251.01.T01:CDS 30.0%
!! CTGATTGAAACAAAAGTGTT+TGG + Chr8:21285103-21285122 None:intergenic 30.0%
!! TAATAATGGTCCTTTGGTTT+TGG + Chr8:21284119-21284138 None:intergenic 30.0%
AAAACGGATAGACTTCATTC+CGG + Chr8:21286420-21286439 None:intergenic 35.0%
AAAAGGATGGCCAAGATATT+TGG - Chr8:21286183-21286202 MsG0880043251.01.T01:intron 35.0%
AAAGAGAAACTAGGTTAGCA+AGG + Chr8:21285015-21285034 None:intergenic 35.0%
AACAAAATCAGAAAGACCAG+AGG + Chr8:21284499-21284518 None:intergenic 35.0%
AATCTGATGAGGAATTGAGA+AGG - Chr8:21285618-21285637 MsG0880043251.01.T01:intron 35.0%
ACACAATTGATGCAGAAGTT+AGG + Chr8:21286271-21286290 None:intergenic 35.0%
ACCAGTATTAGCAGTGATAT+CGG + Chr8:21286314-21286333 None:intergenic 35.0%
AGAGTAGTCAATGTATCATC+AGG - Chr8:21285752-21285771 MsG0880043251.01.T01:CDS 35.0%
AGTCAAGTACTCATTACGAA+CGG - Chr8:21285252-21285271 MsG0880043251.01.T01:intron 35.0%
AGTCAATGTATCATCAGGAT+TGG - Chr8:21285757-21285776 MsG0880043251.01.T01:CDS 35.0%
ATCAATCAGACTCAAACACA+TGG + Chr8:21284308-21284327 None:intergenic 35.0%
ATTGTGTAGGTTAACAATGC+TGG - Chr8:21285192-21285211 MsG0880043251.01.T01:intron 35.0%
CAACAACGATTGTATTGTGT+AGG - Chr8:21285179-21285198 MsG0880043251.01.T01:intron 35.0%
CATCTATTCTCTCTTCTGTT+AGG + Chr8:21286114-21286133 None:intergenic 35.0%
GAAAAGAGGTCTTCATGATT+TGG - Chr8:21284461-21284480 MsG0880043251.01.T01:CDS 35.0%
GAAGGTTCCTTAGAAAGAAA+AGG - Chr8:21286166-21286185 MsG0880043251.01.T01:intron 35.0%
GGAACCTTCTTCAAAATCTT+TGG + Chr8:21286155-21286174 None:intergenic 35.0%
GTAGTCAATTTGATACGAAC+AGG - Chr8:21284883-21284902 MsG0880043251.01.T01:intron 35.0%
GTCAATGTATCATCAGGATT+GGG - Chr8:21285758-21285777 MsG0880043251.01.T01:CDS 35.0%
GTTAACAATGCTGGGATTAA+CGG - Chr8:21285201-21285220 MsG0880043251.01.T01:intron 35.0%
GTTCCTTAGAAAGAAAAGGA+TGG - Chr8:21286170-21286189 MsG0880043251.01.T01:intron 35.0%
TATCCATCATGCATATGTAC+TGG - Chr8:21285402-21285421 MsG0880043251.01.T01:intron 35.0%
TGAATCAGATAACTGAAGGA+GGG + Chr8:21285729-21285748 None:intergenic 35.0%
TTGGTGAATCAGATAACTGA+AGG + Chr8:21285733-21285752 None:intergenic 35.0%
TTGTGTAGGTTAACAATGCT+GGG - Chr8:21285193-21285212 MsG0880043251.01.T01:intron 35.0%
TTTCCAGTACATATGCATGA+TGG + Chr8:21285408-21285427 None:intergenic 35.0%
TTTGTGATGCTCATCTTGTT+AGG - Chr8:21285037-21285056 MsG0880043251.01.T01:intron 35.0%
! AACTTAAGGGAGTACAAAAC+AGG + Chr8:21284648-21284667 None:intergenic 35.0%
! AAGATTTTCCTGATCAGGAA+AGG + Chr8:21283708-21283727 None:intergenic 35.0%
! AGAAGCTTTAGCAACAGTAT+AGG + Chr8:21286212-21286231 None:intergenic 35.0%
! GATGATACATTGACTACTCT+TGG + Chr8:21285752-21285771 None:intergenic 35.0%
!! CATTGATGTTCTTAACTTGC+AGG - Chr8:21285592-21285611 MsG0880043251.01.T01:intron 35.0%
!!! ACCAACAGTTTTTTCCGTTA+AGG - Chr8:21285064-21285083 MsG0880043251.01.T01:intron 35.0%
!!! ATATCGGTTTTGACATAACC+AGG + Chr8:21286298-21286317 None:intergenic 35.0%
!!! CAACAGTTTTTTCCGTTAAG+GGG - Chr8:21285066-21285085 MsG0880043251.01.T01:intron 35.0%
!!! CCAACAGTTTTTTCCGTTAA+GGG - Chr8:21285065-21285084 MsG0880043251.01.T01:intron 35.0%
!!! TATCGGTTTTGACATAACCA+GGG + Chr8:21286297-21286316 None:intergenic 35.0%
AAGTTAGCACTGCTTCCTAA+TGG - Chr8:21286370-21286389 MsG0880043251.01.T01:intron 40.0%
ACAGCAAGAGATGAGAAAAG+AGG - Chr8:21284447-21284466 MsG0880043251.01.T01:CDS 40.0%
ACCGATATCACTGCTAATAC+TGG - Chr8:21286310-21286329 MsG0880043251.01.T01:intron 40.0%
ACTGGATCGAACAAAGGAAT+TGG - Chr8:21284375-21284394 MsG0880043251.01.T01:intron 40.0%
AGAAAGAGGAAGAACACACA+AGG + Chr8:21284339-21284358 None:intergenic 40.0%
ATCAGACTCAAACACATGGT+TGG + Chr8:21284304-21284323 None:intergenic 40.0%
CATACAACAGTAGTCAACTG+TGG - Chr8:21284950-21284969 MsG0880043251.01.T01:intron 40.0%
CATCTGGCGTTTACTATATC+CGG - Chr8:21286398-21286417 MsG0880043251.01.T01:intron 40.0%
CCCTTAACGGAAAAAACTGT+TGG + Chr8:21285068-21285087 None:intergenic 40.0%
CTAAGTGGTATAGGAATTGG+AGG + Chr8:21284233-21284252 None:intergenic 40.0%
GAATCAGATAACTGAAGGAG+GGG + Chr8:21285728-21285747 None:intergenic 40.0%
GAGCTAAGTGGTATAGGAAT+TGG + Chr8:21284236-21284255 None:intergenic 40.0%
GATAATCTCCAACCCCTTAA+CGG + Chr8:21285081-21285100 None:intergenic 40.0%
GTATAGGCAGCCAAATATCT+TGG + Chr8:21286196-21286215 None:intergenic 40.0%
GTCAAGTACTCATTACGAAC+GGG - Chr8:21285253-21285272 MsG0880043251.01.T01:intron 40.0%
GTGAATCAGATAACTGAAGG+AGG + Chr8:21285730-21285749 None:intergenic 40.0%
TCAAGTACTCATTACGAACG+GGG - Chr8:21285254-21285273 MsG0880043251.01.T01:intron 40.0%
TGGTTTGAGCTAAGTGGTAT+AGG + Chr8:21284242-21284261 None:intergenic 40.0%
! ATCATCGTTGTCATTTACCG+TGG - Chr8:21284981-21285000 MsG0880043251.01.T01:CDS 40.0%
! ATTCATGGTGTTGAGGTTGA+TGG - Chr8:21284082-21284101 MsG0880043251.01.T01:CDS 40.0%
! CAAGGAAGATTTTCCTGATC+AGG + Chr8:21283713-21283732 None:intergenic 40.0%
! TGGCCATCCTTTTCTTTCTA+AGG + Chr8:21286176-21286195 None:intergenic 40.0%
! TTAGCAAGGTTTTCTGTCCA+CGG + Chr8:21285001-21285020 None:intergenic 40.0%
!! GTATCGAATGAATGGGCTAA+AGG - Chr8:21286067-21286086 MsG0880043251.01.T01:intron 40.0%
!!! AGTTTTTTCCGTTAAGGGGT+TGG - Chr8:21285070-21285089 MsG0880043251.01.T01:intron 40.0%
AACATCGTATTGCGAGGGTT+AGG + Chr8:21284274-21284293 None:intergenic 45.0%
ACTTCGCTCGAGTTTGAATC+TGG - Chr8:21284205-21284224 MsG0880043251.01.T01:intron 45.0%
AGCTTCAGCTGGAATCAAAG+TGG - Chr8:21284419-21284438 MsG0880043251.01.T01:intron 45.0%
AGGTTTATTCCCCCTATCGA+TGG - Chr8:21284806-21284825 MsG0880043251.01.T01:intron 45.0%
AGTCAAACTCCCATCGATAG+GGG + Chr8:21284819-21284838 None:intergenic 45.0%
ATAACTGAAGGAGGGGAAGA+AGG + Chr8:21285721-21285740 None:intergenic 45.0%
ATCAGGATTGGGCAAGATAG+AGG - Chr8:21285769-21285788 MsG0880043251.01.T01:CDS 45.0%
ATGAGCAGCACCTTCTTCTA+CGG + Chr8:21286344-21286363 None:intergenic 45.0%
ATGCCAACATCGTATTGCGA+GGG + Chr8:21284279-21284298 None:intergenic 45.0%
CGGATATAGTAAACGCCAGA+TGG + Chr8:21286400-21286419 None:intergenic 45.0%
CTTCCTAATGGTAGTCCATC+TGG - Chr8:21286382-21286401 MsG0880043251.01.T01:intron 45.0%
CTTCGCTCGAGTTTGAATCT+GGG - Chr8:21284206-21284225 MsG0880043251.01.T01:intron 45.0%
GAGTCAAACTCCCATCGATA+GGG + Chr8:21284820-21284839 None:intergenic 45.0%
GGAAGCAGTGCTAACTTAAC+AGG + Chr8:21286367-21286386 None:intergenic 45.0%
GGTTTATTCCCCCTATCGAT+GGG - Chr8:21284807-21284826 MsG0880043251.01.T01:intron 45.0%
GTGTGTTCTTCCTCTTTCTC+AGG - Chr8:21284340-21284359 MsG0880043251.01.T01:intron 45.0%
TAACCCTCGCAATACGATGT+TGG - Chr8:21284273-21284292 MsG0880043251.01.T01:intron 45.0%
TATGCCAACATCGTATTGCG+AGG + Chr8:21284280-21284299 None:intergenic 45.0%
TGCATCAATTGTGTTTGCCC+TGG - Chr8:21286277-21286296 MsG0880043251.01.T01:intron 45.0%
TTTCCTGATCAGGAAAGGTG+TGG + Chr8:21283703-21283722 None:intergenic 45.0%
! CTCATCTGGTTTGAGCTAAG+TGG + Chr8:21284248-21284267 None:intergenic 45.0%
! CTTTTTATCTGGACCGTCGA+AGG + Chr8:21284864-21284883 None:intergenic 45.0%
! GTAAGGCAATTAGCTTCAGC+TGG - Chr8:21284408-21284427 MsG0880043251.01.T01:intron 45.0%
! TTCCTGATCAGGAAAGGTGT+GGG + Chr8:21283702-21283721 None:intergenic 45.0%
ATTGAGGATCCAGTCAGTGC+AGG + Chr8:21285357-21285376 None:intergenic 50.0%
CCACTGCATACCTGAGAAAG+AGG + Chr8:21284353-21284372 None:intergenic 50.0%
CCTCTTTCTCAGGTATGCAG+TGG - Chr8:21284350-21284369 MsG0880043251.01.T01:intron 50.0%
CGAGGGTTAGGTAACTCATC+TGG + Chr8:21284262-21284281 None:intergenic 50.0%
CGAGTCAAACTCCCATCGAT+AGG + Chr8:21284821-21284840 None:intergenic 50.0%
CTTGCAGGCACAATCTGATG+AGG - Chr8:21285607-21285626 MsG0880043251.01.T01:intron 50.0%
GATGGTGAGGCCAAAACCAA+AGG - Chr8:21284106-21284125 MsG0880043251.01.T01:CDS 50.0%
GCCATATTCCTCCTGTCTTC+CGG - Chr8:21284761-21284780 MsG0880043251.01.T01:intron 50.0%
GGAATAAACCTCCACACGAG+AGG + Chr8:21284797-21284816 None:intergenic 50.0%
GGGGTCAACGGATACAAAAG+AGG + Chr8:21283682-21283701 None:intergenic 50.0%
GGTCTCTTCACCGTAGAAGA+AGG - Chr8:21286331-21286350 MsG0880043251.01.T01:intron 50.0%
GTCAAACTCCCATCGATAGG+GGG + Chr8:21284818-21284837 None:intergenic 50.0%
GTGGTGACTGGATCGAACAA+AGG - Chr8:21284369-21284388 MsG0880043251.01.T01:intron 50.0%
TCCGGAAGACAGGAGGAATA+TGG + Chr8:21284765-21284784 None:intergenic 50.0%
TTGAGGATCCAGTCAGTGCA+GGG + Chr8:21285356-21285375 None:intergenic 50.0%
TTGGAGACACTCAAAGCCTC+TGG - Chr8:21284480-21284499 MsG0880043251.01.T01:CDS 50.0%
! TCCTGATCAGGAAAGGTGTG+GGG + Chr8:21283701-21283720 None:intergenic 50.0%
! TGATACAACCCTGCACTGAC+TGG - Chr8:21285345-21285364 MsG0880043251.01.T01:intron 50.0%
!! ACGCCAGATGGACTACCATT+AGG + Chr8:21286388-21286407 None:intergenic 50.0%
!! GGTGTTGAGGTTGATGGAGA+TGG - Chr8:21284088-21284107 MsG0880043251.01.T01:CDS 50.0%
!! TGAGGTTGATGGAGATGGTG+AGG - Chr8:21284093-21284112 MsG0880043251.01.T01:CDS 50.0%
AAACCTCCACACGAGAGGAG+AGG + Chr8:21284792-21284811 None:intergenic 55.0%
AACCTCCACACGAGAGGAGA+GGG + Chr8:21284791-21284810 None:intergenic 55.0%
ACCCCACACCTTTCCTGATC+AGG - Chr8:21283697-21283716 MsG0880043251.01.T01:three_prime_UTR 55.0%
CTCAGGTATGCAGTGGTGAC+TGG - Chr8:21284357-21284376 MsG0880043251.01.T01:intron 55.0%
TATCTGGACCGTCGAAGGTG+AGG + Chr8:21284859-21284878 None:intergenic 55.0%
! CAGGAAAGGTGTGGGGTCAA+CGG + Chr8:21283694-21283713 None:intergenic 55.0%
AGGGAGCTCCGGAAGACAGG+AGG + Chr8:21284772-21284791 None:intergenic 65.0%
CACCGCCTCCTCACCTTCGA+CGG - Chr8:21284848-21284867 MsG0880043251.01.T01:intron 65.0%
CACGAGAGGAGAGGGAGCTC+CGG + Chr8:21284783-21284802 None:intergenic 65.0%
CTCCCTCTCCTCTCGTGTGG+AGG - Chr8:21284786-21284805 MsG0880043251.01.T01:intron 65.0%
CTGGACCGTCGAAGGTGAGG+AGG + Chr8:21284856-21284875 None:intergenic 65.0%
GACCGTCGAAGGTGAGGAGG+CGG + Chr8:21284853-21284872 None:intergenic 65.0%
GAGAGGGAGCTCCGGAAGAC+AGG + Chr8:21284775-21284794 None:intergenic 65.0%
GAGCTCCCTCTCCTCTCGTG+TGG - Chr8:21284783-21284802 MsG0880043251.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 21283630 21286606 21283630 ID=MsG0880043251.01;Name=MsG0880043251.01
Chr8 mRNA 21283630 21286606 21283630 ID=MsG0880043251.01.T01;Parent=MsG0880043251.01;Name=MsG0880043251.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.5|0.6|1|0.75|0.8|5|165|298
Chr8 exon 21283630 21284172 21283630 ID=MsG0880043251.01.T01:exon:5727;Parent=MsG0880043251.01.T01
Chr8 exon 21284446 21284622 21284446 ID=MsG0880043251.01.T01:exon:5726;Parent=MsG0880043251.01.T01
Chr8 exon 21284961 21285035 21284961 ID=MsG0880043251.01.T01:exon:5725;Parent=MsG0880043251.01.T01
Chr8 exon 21285628 21285874 21285628 ID=MsG0880043251.01.T01:exon:5724;Parent=MsG0880043251.01.T01
Chr8 exon 21286587 21286606 21286587 ID=MsG0880043251.01.T01:exon:5723;Parent=MsG0880043251.01.T01
Chr8 CDS 21286587 21286606 21286587 ID=MsG0880043251.01.T01:cds;Parent=MsG0880043251.01.T01
Chr8 CDS 21285628 21285874 21285628 ID=MsG0880043251.01.T01:cds;Parent=MsG0880043251.01.T01
Chr8 CDS 21284961 21285035 21284961 ID=MsG0880043251.01.T01:cds;Parent=MsG0880043251.01.T01
Chr8 CDS 21284446 21284622 21284446 ID=MsG0880043251.01.T01:cds;Parent=MsG0880043251.01.T01
Chr8 CDS 21283795 21284172 21283795 ID=MsG0880043251.01.T01:cds;Parent=MsG0880043251.01.T01
Chr8 three_prime_UTR 21283630 21283794 21283630 ID=MsG0880043251.01.T01:three_prime_utr;Parent=MsG0880043251.01.T01
Gene Sequence

>MsG0880043251.01.T01

ATGGGAGAACATAGAGAAAGGTATGCAGTGGTGACTGGATCGAACAAAGGAATTGGATTTGAGATAGTAAGGCAATTAGCTTCAGCTGGAATCAAAGTGGTGCTTACAGCAAGAGATGAGAAAAGAGGTCTTCATGATTTGGAGACACTCAAAGCCTCTGGTCTTTCTGATTTTGTTGTTTTTCATCAACTAGATGTGGCTGATGCTGCAAGTGTAGCTACTCTTGCAGATTTTATCAAATCTCAATTTGGCAAACTTGATATTCTGGTTAACAATGCTGGGATTAACGGAATCGAAATCAAAGACAGTGATTTATACAGTCAAGTACTCATTACGAACGGGGCACAATCTGATGAGGAATTGAGAAGGACAATGACATATACATATGAGTTAGCTAAAGAATGCATTCAAATAAATTACTATGGGGCTAAAAGAACATTTGAATACCTTCTTCCCCTCCTTCAGTTATCTGATTCACCAAGAGTAGTCAATGTATCATCAGGATTGGGCAAGATAGAGTTTGTATCGAATGAATGGGCTAAAGGAGTCTTCAGTGATGTCGAAAACCTAACAGAAGAGAGAATAGATGAAGTGATAAATGAGTTTACCAAAGATTTTGAAGAAGGTTCCTTAGAAAGAAAAGGATGGCCAAGATATTTGGCTGCCTATACTGTTGCTAAAGCTTCTATGAATGCATATACAAGAATTACTGCAAAGAAGTATCCTAACTTCTGCATCAATTGTGTTTGCCCTGGTTATGTCAAAACCGATATCACTGCTAATACTGGTCTCTTCACCGTAGAAGAAGGTGCTGCTCATCCTGTTAAGTTAGCACTGCTTCCTAATGGTAGTCCATCTGGCGTTTACTATATCCGGAATGAAGTCTATCCGTTTTGA
Protein sequence

>MsG0880043251.01.T01

MGEHRERYAVVTGSNKGIGFEIVRQLASAGIKVVLTARDEKRGLHDLETLKASGLSDFVVFHQLDVADAASVATLADFIKSQFGKLDILVNNAGINGIEIKDSDLYSQVLITNGAQSDEELRRTMTYTYELAKECIQINYYGAKRTFEYLLPLLQLSDSPRVVNVSSGLGKIEFVSNEWAKGVFSDVENLTEERIDEVINEFTKDFEEGSLERKGWPRYLAAYTVAKASMNAYTRITAKKYPNFCINCVCPGYVKTDITANTGLFTVEEGAAHPVKLALLPNGSPSGVYYIRNEVYPF*